Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 311 of 325
Found at i:100736187 original size:18 final size:18
Alignment explanation
Indices: 100736145--100736187 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
100736135 TATATATTCA
*
100736145 AATTTTTATAAATATTTT
1 AATTTTTAAAAATATTTT
*
100736163 AAATTTTAAAAATTATTTT
1 AATTTTTAAAAA-TATTTT
100736182 -ATTTTT
1 AATTTTT
100736188 TTATAATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
AATTTTTAAAAATATTTT
Found at i:100736195 original size:19 final size:19
Alignment explanation
Indices: 100736144--100736199 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 19
100736134 ATATATATTC
*
100736144 AAATTTTTATAAATATTTT
1 AAATTTTTATAATTATTTT
* *
100736163 AAATTTTAAAAATTATTTT
1 AAATTTTTATAATTATTTT
**
100736182 ATTTTTTTATAATT-TTTT
1 AAATTTTTATAATTATTTT
100736200 TTGAGAGTGA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
18 4 0.13
19 26 0.87
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
AAATTTTTATAATTATTTT
Found at i:100743655 original size:25 final size:26
Alignment explanation
Indices: 100743623--100743675 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
100743613 AAACTCTTCT
*
100743623 AAAAG-AAACTC-AAGAGAAATTTTTA
1 AAAAGAAAACTCAAAGAG-AATTTATA
100743648 AAAAGAAAACTCAAAGAGAATTTATA
1 AAAAGAAAACTCAAAGAGAATTTATA
100743674 AA
1 AA
100743676 CTCAAAAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 5 0.20
26 15 0.60
27 5 0.20
ACGTcount: A:0.60, C:0.08, G:0.11, T:0.21
Consensus pattern (26 bp):
AAAAGAAAACTCAAAGAGAATTTATA
Found at i:100744497 original size:31 final size:31
Alignment explanation
Indices: 100744462--100744522 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
100744452 ATGTGTGTAA
* *
100744462 TTGAATCAAAATGAAAGTTTCATGTATATAT
1 TTGAATCAAAATCAAAGTTTCATGCATATAT
* *
100744493 TTGAATCACAGTCAAAGTTTCATGCATATA
1 TTGAATCAAAATCAAAGTTTCATGCATATA
100744523 ATTGCACCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.36
Consensus pattern (31 bp):
TTGAATCAAAATCAAAGTTTCATGCATATAT
Found at i:100748627 original size:24 final size:24
Alignment explanation
Indices: 100748600--100748651 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
100748590 TTAGCAAGTC
*
100748600 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
100748624 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
100748648 AAAT
1 AAAT
100748652 CCTTTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:100749737 original size:12 final size:11
Alignment explanation
Indices: 100749705--100749738 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
100749695 GGCCTGCCCG
100749705 TATTAATTTTTA
1 TATT-ATTTTTA
*
100749717 TACTATTTTTA
1 TATTATTTTTA
100749728 TATTATTTTTA
1 TATTATTTTTA
100749739 AATATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 17 0.85
12 3 0.15
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (11 bp):
TATTATTTTTA
Found at i:100749899 original size:30 final size:30
Alignment explanation
Indices: 100749865--100749926 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
100749855 CTTAACAAGT
100749865 AAATGCCTCTAAAATAATAAAAAAAATAAC
1 AAATGCCTCTAAAATAATAAAAAAAATAAC
* * *
100749895 AAATGCCTTTAAAATAATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAAAAAAAATAAC
100749925 AA
1 AA
100749927 GAAAATAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.61, C:0.13, G:0.03, T:0.23
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAAAAAAAATAAC
Found at i:100752379 original size:14 final size:13
Alignment explanation
Indices: 100752342--100752378 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
100752332 CAAGTTTTAT
100752342 GAACTAAAAAACA
1 GAACTAAAAAACA
100752355 GAACTAAAAAACA
1 GAACTAAAAAACA
*
100752368 GTACTAAAAAA
1 GAACTAAAAAA
100752379 ATTTATCCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.68, C:0.14, G:0.08, T:0.11
Consensus pattern (13 bp):
GAACTAAAAAACA
Found at i:100759796 original size:31 final size:31
Alignment explanation
Indices: 100759761--100759823 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
100759751 ATTGAACCTT
* *
100759761 TCAAATTTTTTGAAAATTC-TCATTAATCCCC
1 TCAAAATTTTTGAAAATTCAT-ATTAAGCCCC
*
100759792 TCAAAATTTTTGAAAGTTCATATTAAGCCCC
1 TCAAAATTTTTGAAAATTCATATTAAGCCCC
100759823 T
1 T
100759824 AATTTTCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 27 0.96
32 1 0.04
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.40
Consensus pattern (31 bp):
TCAAAATTTTTGAAAATTCATATTAAGCCCC
Found at i:100763353 original size:2 final size:2
Alignment explanation
Indices: 100763346--100763374 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
100763336 CTAAACAGAA
100763346 GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
100763375 GAGGTAGGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (2 bp):
GT
Found at i:100774022 original size:24 final size:24
Alignment explanation
Indices: 100773954--100774040 Score: 70
Period size: 24 Copynumber: 3.6 Consensus size: 24
100773944 CAAATAAAAT
* *
100773954 TATACATAAAAATATATAT-AGAT
1 TATACATAAAAATATACATAAGAG
* * *
100773977 TCATTAGAAAAAAACATACATAATGA-
1 T-A-TACATAAAAATATACATAA-GAG
*
100774003 TATACATAAAAATATCCATAAGAG
1 TATACATAAAAATATACATAAGAG
*
100774027 TGTACATAAAAATA
1 TATACATAAAAATA
100774041 CATATGACAA
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
23 3 0.06
24 29 0.58
25 14 0.28
26 2 0.04
27 2 0.04
ACGTcount: A:0.56, C:0.09, G:0.07, T:0.28
Consensus pattern (24 bp):
TATACATAAAAATATACATAAGAG
Found at i:100781379 original size:45 final size:45
Alignment explanation
Indices: 100781298--100781387 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 45
100781288 CGCTTAAGAG
*
100781298 AAAGTGGTAGGTACCTTTCCACATTCTTTTTACTTTTCAGTAGAT
1 AAAGTGGTAGATACCTTTCCACATTCTTTTTACTTTTCAGTAGAT
* * *
100781343 AAAGTGGTAGATACCTTTTCATATT-TCTTTTGCTTTTCAGTAGAT
1 AAAGTGGTAGATACCTTTCCACATTCT-TTTTACTTTTCAGTAGAT
100781388 TGTTAATAGT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 1 0.03
45 39 0.98
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (45 bp):
AAAGTGGTAGATACCTTTCCACATTCTTTTTACTTTTCAGTAGAT
Found at i:100781772 original size:15 final size:15
Alignment explanation
Indices: 100781752--100781782 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
100781742 TACTTATTCC
100781752 TACTTGTGTAGTCTA
1 TACTTGTGTAGTCTA
100781767 TACTTGTGTAGTCTA
1 TACTTGTGTAGTCTA
100781782 T
1 T
100781783 GGATATCCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.19, T:0.48
Consensus pattern (15 bp):
TACTTGTGTAGTCTA
Found at i:100782759 original size:15 final size:15
Alignment explanation
Indices: 100782739--100782768 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
100782729 AAACATGGTA
100782739 AATTTGACTATTTAG
1 AATTTGACTATTTAG
100782754 AATTTGACTATTTAG
1 AATTTGACTATTTAG
100782769 GATTGAATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (15 bp):
AATTTGACTATTTAG
Found at i:100785109 original size:13 final size:13
Alignment explanation
Indices: 100785091--100785124 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
100785081 ACTAGAAAGT
100785091 GAAAAAAAAAAAA
1 GAAAAAAAAAAAA
**
100785104 GAAAAAAGGAAAA
1 GAAAAAAAAAAAA
100785117 GAAAAAAA
1 GAAAAAAA
100785125 GAACAGTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
GAAAAAAAAAAAA
Found at i:100785121 original size:21 final size:22
Alignment explanation
Indices: 100785086--100785127 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
100785076 ATATAACTAG
100785086 AAAGTGAAAAAAAAAAAAGAAA
1 AAAGTGAAAAAAAAAAAAGAAA
*
100785108 AAAG-GAAAAGAAAAAAAGAA
1 AAAGTGAAAAAAAAAAAAGAA
100785128 CAGTTCACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (22 bp):
AAAGTGAAAAAAAAAAAAGAAA
Found at i:100795151 original size:11 final size:11
Alignment explanation
Indices: 100795113--100795152 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
100795103 ATAATAACAA
100795113 TAAAATAATAG
1 TAAAATAATAG
*
100795124 TAACATAATAG
1 TAAAATAATAG
* *
100795135 TGAAATGATAG
1 TAAAATAATAG
100795146 TAAAATA
1 TAAAATA
100795153 TTGAAAAAAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.57, C:0.03, G:0.12, T:0.28
Consensus pattern (11 bp):
TAAAATAATAG
Found at i:100802098 original size:19 final size:19
Alignment explanation
Indices: 100802066--100802117 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
100802056 TTTATACTAT
100802066 CTTTTTTAGT-TTTTATGAA
1 CTTTTTTA-TATTTTATGAA
*
100802085 CTTTTTTATATTTTTTGAA
1 CTTTTTTATATTTTATGAA
*
100802104 -TATTTTATAATTTT
1 CTTTTTTAT-ATTTT
100802118 TAAATTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 8 0.28
19 21 0.72
ACGTcount: A:0.23, C:0.04, G:0.06, T:0.67
Consensus pattern (19 bp):
CTTTTTTATATTTTATGAA
Found at i:100802126 original size:19 final size:18
Alignment explanation
Indices: 100802088--100802127 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
100802078 TTATGAACTT
* *
100802088 TTTTATATTTTTTGAATA
1 TTTTATAATTTTTAAATA
100802106 TTTTATAATTTTTAAATTA
1 TTTTATAATTTTTAAA-TA
100802125 TTT
1 TTT
100802128 GTTGACATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTTATAATTTTTAAATA
Found at i:100802618 original size:84 final size:82
Alignment explanation
Indices: 100802514--100802680 Score: 280
Period size: 84 Copynumber: 2.0 Consensus size: 82
100802504 GACCATCTGG
* *
100802514 TGTCATTAGTCAAAAATAAAACTTTATTAAAATTTATTATTAATCGACCAACTAAATAAAAATTA
1 TGTCATTAGTCAAAAATAAAACTTTATTAAAATTTATTATCAATCAACCAACTAAAT-AAAATTA
100802579 AAATTTCAACACAAGTGTA
65 AAA-TTCAACACAAGTGTA
*
100802598 TGTCATTAGTCAAAATTAAAACTTTATTAAAATTTATTATCAATCAACCAACTAAATAAAATTAA
1 TGTCATTAGTCAAAAATAAAACTTTATTAAAATTTATTATCAATCAACCAACTAAATAAAATTAA
*
100802663 AATTCAACACAATTGTA
66 AATTCAACACAAGTGTA
100802680 T
1 T
100802681 TTAGGGTAAA
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
82 15 0.19
83 10 0.13
84 54 0.68
ACGTcount: A:0.49, C:0.13, G:0.05, T:0.34
Consensus pattern (82 bp):
TGTCATTAGTCAAAAATAAAACTTTATTAAAATTTATTATCAATCAACCAACTAAATAAAATTAA
AATTCAACACAAGTGTA
Found at i:100805663 original size:15 final size:15
Alignment explanation
Indices: 100805626--100805667 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
100805616 TTAGGTCATT
100805626 TTAAAATTTATAAAAA
1 TTAAAA-TTATAAAAA
*
100805642 TTTAAATTAGTAAAAA
1 TTAAAATTA-TAAAAA
100805658 -TAAAATTATA
1 TTAAAATTATA
100805668 CTTTGACCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 2 0.09
15 10 0.43
16 11 0.48
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (15 bp):
TTAAAATTATAAAAA
Found at i:100814563 original size:22 final size:23
Alignment explanation
Indices: 100814538--100814590 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
100814528 GTTCATCGGT
*
100814538 TTTTAAATTTTACCAT-TCTGAA
1 TTTTAAATGTTACCATATCTGAA
* *
100814560 TTTT-ACTGTTACCATATCTGCA
1 TTTTAAATGTTACCATATCTGAA
100814582 TTGTTAAAT
1 TT-TTAAAT
100814591 CTACCGAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
21 9 0.38
22 11 0.46
23 2 0.08
24 2 0.08
ACGTcount: A:0.28, C:0.15, G:0.08, T:0.49
Consensus pattern (23 bp):
TTTTAAATGTTACCATATCTGAA
Found at i:100819505 original size:19 final size:19
Alignment explanation
Indices: 100819467--100819505 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
100819457 ATTTTAAACG
* *
100819467 AACTTATTTTTTTAGCTTA
1 AACTCATTTTTTAAGCTTA
*
100819486 AACTCATTTTTTAAGTTTA
1 AACTCATTTTTTAAGCTTA
100819505 A
1 A
100819506 TATTTTTGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.54
Consensus pattern (19 bp):
AACTCATTTTTTAAGCTTA
Found at i:100825401 original size:19 final size:19
Alignment explanation
Indices: 100825357--100825401 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 19
100825347 TATATATATT
100825357 TTTTAATTATTTAATTTGA
1 TTTTAATTATTTAATTTGA
*
100825376 ---TAA-TATTTATTTTGA
1 TTTTAATTATTTAATTTGA
100825391 TTTTAATTATT
1 TTTTAATTATT
100825402 ACTTATCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 8
0.70 0.03 0.27
Matches are distributed among these distances:
15 11 0.52
16 3 0.14
18 3 0.14
19 4 0.19
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.64
Consensus pattern (19 bp):
TTTTAATTATTTAATTTGA
Found at i:100846363 original size:19 final size:19
Alignment explanation
Indices: 100846341--100846390 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
100846331 TAAAACAAAA
*
100846341 TAAAAGAAAGAAAAAGAAT
1 TAAAAGAAACAAAAAGAAT
*
100846360 TAAAAGAAACAAAAAGAGT
1 TAAAAGAAACAAAAAGAAT
100846379 TAAAACGAAACA
1 TAAAA-GAAACA
100846391 GAGAATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 22 0.79
20 6 0.21
ACGTcount: A:0.70, C:0.06, G:0.14, T:0.10
Consensus pattern (19 bp):
TAAAAGAAACAAAAAGAAT
Found at i:100847166 original size:27 final size:28
Alignment explanation
Indices: 100847116--100847170 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
100847106 TGAATTTATA
100847116 TGAATTGAATATATGTTGATTATTTGAAT
1 TGAATTGAATATATGTTGA-TATTTGAAT
100847145 TGAATTGAATAT-TGGTTG-TATTTGAA
1 TGAATTGAATATAT-GTTGATATTTGAA
100847171 AAGTGAAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 8 0.32
28 1 0.04
29 16 0.64
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (28 bp):
TGAATTGAATATATGTTGATATTTGAAT
Found at i:100855410 original size:31 final size:30
Alignment explanation
Indices: 100855346--100855429 Score: 82
Period size: 31 Copynumber: 2.8 Consensus size: 30
100855336 AACGTGTAAT
* * *
100855346 TATATATATGAACTGTAA-TTTGGTACAAT
1 TATATACATGAACTCTAATTTTGGTACAAA
100855375 TATATACATGAAGCTCTAATTTTGGCT-CAAA
1 TATATACATGAA-CTCTAATTTTGG-TACAAA
* *
100855406 TATATACTTGAAACTTTAATTTTG
1 TATATACATG-AACTCTAATTTTG
100855430 ATTTAATCAT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
29 11 0.24
30 5 0.11
31 27 0.59
32 3 0.07
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.42
Consensus pattern (30 bp):
TATATACATGAACTCTAATTTTGGTACAAA
Found at i:100857646 original size:16 final size:16
Alignment explanation
Indices: 100857625--100857655 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
100857615 TCAATCAGCG
100857625 ATATATATATACATAC
1 ATATATATATACATAC
*
100857641 ATATATGTATACATA
1 ATATATATATACATA
100857656 TATAATGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.03, T:0.39
Consensus pattern (16 bp):
ATATATATATACATAC
Found at i:100859616 original size:23 final size:23
Alignment explanation
Indices: 100859590--100859633 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
100859580 ATAATTTAAA
*
100859590 AAATAAAAAGATTAAAATTAATC
1 AAATAAAAAGATAAAAATTAATC
* *
100859613 AAATTAAAATATAAAAATTAA
1 AAATAAAAAGATAAAAATTAA
100859634 ATCTACAACT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (23 bp):
AAATAAAAAGATAAAAATTAATC
Found at i:100859632 original size:14 final size:14
Alignment explanation
Indices: 100859589--100859634 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
100859579 AATAATTTAA
100859589 AAAATA-AAAAGATT
1 AAAATATAAAA-ATT
100859603 AAAAT-TAATCAAATT
1 AAAATATAA--AAATT
100859618 AAAATATAAAAATT
1 AAAATATAAAAATT
100859632 AAA
1 AAA
100859635 TCTACAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
14 15 0.54
15 8 0.29
16 5 0.18
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (14 bp):
AAAATATAAAAATT
Found at i:100861761 original size:23 final size:22
Alignment explanation
Indices: 100861710--100861763 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
100861700 TCGGTATTGT
100861710 TATTTTT-AATAAAATTTGTTA
1 TATTTTTAAATAAAATTTGTTA
*
100861731 TAACTTTTTAAATAAATTTTGTTTA
1 T-A-TTTTTAAATAAAATTTG-TTA
100861756 TATTTTTA
1 TATTTTTA
100861764 TGATTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
21 1 0.04
22 1 0.04
23 11 0.39
24 11 0.39
25 4 0.14
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (22 bp):
TATTTTTAAATAAAATTTGTTA
Found at i:100861789 original size:20 final size:19
Alignment explanation
Indices: 100861743--100861790 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 19
100861733 ACTTTTTAAA
100861743 TAAATTTTGTTTATATTTT
1 TAAATTTTGTTTATATTTT
*
100861762 TATGATTTT-TTTAATAATTTT
1 TA-AATTTTGTTT-AT-ATTTT
100861783 TAAATTTT
1 TAAATTTT
100861791 AAAAGGGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 5 0.21
20 12 0.50
21 7 0.29
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (19 bp):
TAAATTTTGTTTATATTTT
Found at i:100862947 original size:31 final size:29
Alignment explanation
Indices: 100862910--100862989 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
100862900 ATCTTAAAAT
* *
100862910 TATACATGAATTTTAATTTAACGTGCAATTA
1 TATACATGAACTGTAATTT--CGTGCAATTA
*
100862941 TATACATGAACTGTAATTTGGTGCAATTA
1 TATACATGAACTGTAATTTCGTGCAATTA
* * *
100862970 TACACGTGAAGCTCTAATTT
1 TATACATGAA-CTGTAATTT
100862990 TGGTTCAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 17 0.40
30 8 0.19
31 17 0.40
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (29 bp):
TATACATGAACTGTAATTTCGTGCAATTA
Found at i:100862964 original size:29 final size:30
Alignment explanation
Indices: 100862932--100862989 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
100862922 TTAATTTAAC
* *
100862932 GTGCAATTATATACATGAA-CTGTAATTTG
1 GTGCAATTATACACATGAAGCTCTAATTTG
*
100862961 GTGCAATTATACACGTGAAGCTCTAATTT
1 GTGCAATTATACACATGAAGCTCTAATTT
100862990 TGGTTCAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (30 bp):
GTGCAATTATACACATGAAGCTCTAATTTG
Found at i:100870588 original size:3 final size:3
Alignment explanation
Indices: 100870580--100870618 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
100870570 GGAAAGAGTA
100870580 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
100870619 GTTAAAGGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:100875018 original size:40 final size:40
Alignment explanation
Indices: 100874961--100875037 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
100874951 TAAAGTTATT
* *
100874961 CATAACATGCCCCGAGCTTTGCCAACTTCCTTTCATGAAC
1 CATAACATGCCCAGAGCTATGCCAACTTCCTTTCATGAAC
*
100875001 CATAACATGCCCAGAGCTATGTCAACTTCCTTTCATG
1 CATAACATGCCCAGAGCTATGCCAACTTCCTTTCATG
100875038 CTTAGAGGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.29
Consensus pattern (40 bp):
CATAACATGCCCAGAGCTATGCCAACTTCCTTTCATGAAC
Found at i:100878612 original size:14 final size:14
Alignment explanation
Indices: 100878565--100878612 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
100878555 GTACGAATGG
*
100878565 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
100878579 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
100878593 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
100878607 ATTGGT
1 AATGGT
100878613 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:100885127 original size:12 final size:11
Alignment explanation
Indices: 100885110--100885151 Score: 66
Period size: 11 Copynumber: 3.7 Consensus size: 11
100885100 TAAATCACTC
*
100885110 TTTTTTTTCGA
1 TTTTTTTTTGA
100885121 TTTTTTTTTGA
1 TTTTTTTTTGA
100885132 TTTTTTTTTTGA
1 -TTTTTTTTTGA
100885144 TTTTTTTT
1 TTTTTTTT
100885152 AACTTGTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 18 0.62
12 11 0.38
ACGTcount: A:0.07, C:0.02, G:0.07, T:0.83
Consensus pattern (11 bp):
TTTTTTTTTGA
Found at i:100885550 original size:14 final size:14
Alignment explanation
Indices: 100885503--100885550 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
100885493 GTACGAATGG
*
100885503 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
100885517 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
100885531 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
100885545 ATTGGT
1 AATGGT
100885551 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:100888237 original size:17 final size:18
Alignment explanation
Indices: 100888199--100888237 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
100888189 ATTATTTCTC
*
100888199 AAAAGTACTTTTGAGATA
1 AAAAATACTTTTGAGATA
100888217 AAAAATACTTTTGAGATA
1 AAAAATACTTTTGAGATA
100888235 AAA
1 AAA
100888238 TTATTATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.51, C:0.05, G:0.13, T:0.31
Consensus pattern (18 bp):
AAAAATACTTTTGAGATA
Found at i:100889270 original size:29 final size:30
Alignment explanation
Indices: 100889211--100889268 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
100889201 TCCGAGCCTT
*
100889211 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
*
100889241 GGGGCAAAATTGTAACTT-TGAAAAAGTT
1 GGGGCAAAAATGTAA-TTATGAAAAAGTT
100889269 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.41, C:0.05, G:0.24, T:0.29
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:100889498 original size:13 final size:13
Alignment explanation
Indices: 100889480--100889511 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
100889470 TTTCCAGCAA
100889480 TTATGAATTTATT
1 TTATGAATTTATT
100889493 TTATGAATTTATT
1 TTATGAATTTATT
*
100889506 TGATGA
1 TTATGA
100889512 TGACTCTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:100889709 original size:50 final size:50
Alignment explanation
Indices: 100889596--100889837 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
100889586 ATTTGGGTAA
* * *
100889596 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
100889652 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
100889702 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
100889752 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
100889802 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
100889838 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:100889785 original size:100 final size:103
Alignment explanation
Indices: 100889596--100889845 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
100889586 ATTTGGGTAA
100889596 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
100889661 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
100889702 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
100889764 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
100889802 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
100889846 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:100891700 original size:19 final size:19
Alignment explanation
Indices: 100891658--100891718 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
100891648 TCTCTCAACA
* *
100891658 AAAATTACAAAAAAATTTAA
1 AAAATT-CAAAATAATTTAT
*
100891678 AAAATTCAAAATAATTTTT
1 AAAATTCAAAATAATTTAT
100891697 AAAA-TCTAAAAT-ATTTAT
1 AAAATTC-AAAATAATTTAT
100891715 AAAA
1 AAAA
100891719 AAATTCAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
18 11 0.31
19 19 0.53
20 6 0.17
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATTCAAAATAATTTAT
Found at i:100891717 original size:18 final size:18
Alignment explanation
Indices: 100891667--100891718 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
100891657 AAAAATTACA
* *
100891667 AAAAAATTTAAAAAATTC
1 AAAATATTTATAAAATTC
*
100891685 AAAATAATTTTTAAAA-TC
1 AAAAT-ATTTATAAAATTC
100891703 TAAAATATTTATAAAA
1 -AAAATATTTATAAAA
100891719 AAATTCAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 15 0.54
19 13 0.46
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAATATTTATAAAATTC
Found at i:100891719 original size:19 final size:19
Alignment explanation
Indices: 100891657--100891729 Score: 53
Period size: 19 Copynumber: 3.7 Consensus size: 19
100891647 CTCTCTCAAC
*
100891657 AAAAATTACAAAAAAATTTA-
1 AAAAATT-C-AAAATATTTAT
100891677 AAAAATTCAAAATAATTT-T
1 AAAAATTCAAAAT-ATTTAT
*
100891696 TAAAA-TCTAAAATATTTAT
1 AAAAATTC-AAAATATTTAT
100891715 AAAAAAATTCAAAAT
1 --AAAAATTCAAAAT
100891730 TTATATTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
18 10 0.23
19 15 0.35
20 7 0.16
21 9 0.21
22 2 0.05
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:100892037 original size:26 final size:26
Alignment explanation
Indices: 100892003--100892053 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
100891993 TATCTCGAAT
100892003 AATTTCAC-TCAATTCGACTCGATTCA
1 AATTTCACTTC-ATTCGACTCGATTCA
*
100892029 AATTTCACTTCATTTGACTCGATTC
1 AATTTCACTTCATTCGACTCGATTC
100892054 GAAAAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.39
Consensus pattern (26 bp):
AATTTCACTTCATTCGACTCGATTCA
Found at i:100893936 original size:19 final size:19
Alignment explanation
Indices: 100893914--100893958 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
100893904 AAAGACAAGA
*
100893914 TAATATCATATGCACA-ATT
1 TAATATCATAAGCACATA-T
*
100893933 TAATATTATAAGCACATAT
1 TAATATCATAAGCACATAT
100893952 TAATATC
1 TAATATC
100893959 TAGTATCATG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 21 0.95
20 1 0.05
ACGTcount: A:0.44, C:0.13, G:0.04, T:0.38
Consensus pattern (19 bp):
TAATATCATAAGCACATAT
Found at i:100894708 original size:20 final size:19
Alignment explanation
Indices: 100894678--100894718 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
100894668 ATATATATAT
100894678 ATCAATTTAATCCAATTCA
1 ATCAATTTAATCCAATTCA
*
100894697 ATCAAGTTTAATTCAATTCA
1 ATCAA-TTTAATCCAATTCA
100894717 AT
1 AT
100894719 ATCAAAGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.39
Consensus pattern (19 bp):
ATCAATTTAATCCAATTCA
Found at i:100895554 original size:25 final size:25
Alignment explanation
Indices: 100895520--100895569 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
100895510 TTTTTTCATT
100895520 CTTTTAATAACCA-TCCCACTTAAAG
1 CTTTTAATAA-CAGTCCCACTTAAAG
100895545 CTTTTAATAACAGTCCCACTTAAAG
1 CTTTTAATAACAGTCCCACTTAAAG
100895570 ACCAATAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.32
Consensus pattern (25 bp):
CTTTTAATAACAGTCCCACTTAAAG
Found at i:100906417 original size:17 final size:17
Alignment explanation
Indices: 100906395--100906429 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
100906385 AGTCACACAC
100906395 TTAAATAATAGA-ATAGA
1 TTAAATAAT-GATATAGA
100906412 TTAAATAATGATATAGA
1 TTAAATAATGATATAGA
100906429 T
1 T
100906430 ATACACAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.34
Consensus pattern (17 bp):
TTAAATAATGATATAGA
Found at i:100906664 original size:25 final size:27
Alignment explanation
Indices: 100906607--100906658 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
100906597 TAAAGTACGC
*
100906607 TCAAATAATATAATTTTTTTTGATAAAA
1 TCAAATAATATAATTTTATTT-ATAAAA
100906635 TCAAATAATATAA-TTTATTT-TAAA
1 TCAAATAATATAATTTTATTTATAAA
100906659 TGCAAAGGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 4 0.17
27 6 0.26
28 13 0.57
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (27 bp):
TCAAATAATATAATTTTATTTATAAAA
Found at i:100909026 original size:21 final size:22
Alignment explanation
Indices: 100908986--100909026 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
100908976 TAAAAAAATT
*
100908986 CGACATATATTACCTATTTAAC
1 CGACATATATTACATATTTAAC
*
100909008 CGACATATTTTA-ATATTTA
1 CGACATATATTACATATTTA
100909027 TATCATAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.37, C:0.17, G:0.05, T:0.41
Consensus pattern (22 bp):
CGACATATATTACATATTTAAC
Found at i:100913650 original size:16 final size:15
Alignment explanation
Indices: 100913629--100913676 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
100913619 TGATGGAATA
100913629 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
100913645 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
100913660 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
100913676 A
1 A
100913677 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:100913659 original size:8 final size:8
Alignment explanation
Indices: 100913625--100913676 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
100913615 ACAATGATGG
*
100913625 AATAATAA
1 AATATTAA
100913633 AATATATAA
1 AATAT-TAA
100913642 AATA-TAA
1 AATATTAA
100913649 AATATTAA
1 AATATTAA
*
100913657 AATATCAA
1 AATATTAA
*
100913665 AATATTAG
1 AATATTAA
100913673 AATA
1 AATA
100913677 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:100913676 original size:24 final size:24
Alignment explanation
Indices: 100913624--100913680 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
100913614 AACAATGATG
*
100913624 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
100913648 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
100913672 GAATAATAA
1 GAATAATAA
100913681 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:100913839 original size:23 final size:22
Alignment explanation
Indices: 100913788--100913841 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
100913778 ATACTACATC
100913788 AATATGTACATAT-ATA--AAA
1 AATATGTACATATAATATTAAA
**
100913807 AATAAATACATGATAATATTAAA
1 AATATGTACAT-ATAATATTAAA
100913830 AATATGTACATA
1 AATATGTACATA
100913842 ATATAGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 9 0.33
20 2 0.07
21 3 0.11
22 1 0.04
23 12 0.44
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (22 bp):
AATATGTACATATAATATTAAA
Found at i:100913888 original size:22 final size:24
Alignment explanation
Indices: 100913804--100913889 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 24
100913794 TACATATATA
* *
100913804 AAAAATAAATACATGATAATA--TT
1 AAAAATATATACATAAT-ATAGGTT
*
100913827 AAAAATATGTACATAATATAGTGTT
1 AAAAATATATACATAATATAG-GTT
*
100913852 AAAAATACATACATAATATA-GTT
1 AAAAATATATACATAATATAGGTT
*
100913875 -AAGATATATACATAA
1 AAAAATATATACATAA
100913890 GATAACATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 17 0.32
25 20 0.38
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAGGTT
Found at i:100913944 original size:25 final size:25
Alignment explanation
Indices: 100913910--100914042 Score: 93
Period size: 25 Copynumber: 5.6 Consensus size: 25
100913900 AGAAAAAAAT
100913910 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * *
100913935 ATATATAAATAAAATAGTA-TAAAA
1 ATATATAAATAATATAATATTAAAG
* * *
100913959 ATATATATACGTAATATAAAATTTAA-
1 ATATATA-A-ATAATATAATATTAAAG
** *
100913985 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
100914007 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
100914030 AAATAT-AATAATA
1 ATATATAAATAATA
100914043 ACAAAAAAAA
Statistics
Matches: 84, Mismatches: 17, Indels: 16
0.72 0.15 0.14
Matches are distributed among these distances:
21 3 0.04
22 13 0.15
23 18 0.21
24 16 0.19
25 23 0.27
26 8 0.10
27 3 0.04
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:100913947 original size:14 final size:13
Alignment explanation
Indices: 100913910--100913967 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
100913900 AGAAAAAAAT
*
100913910 ATATATAAATAAT
1 ATATATAAATAAA
*
100913923 ATA-AT-ATTAAA
1 ATATATAAATAAA
100913934 GATATATAAATAAA
1 -ATATATAAATAAA
*
100913948 ATAGTATAAA-AAT
1 ATA-TATAAATAAA
100913961 ATATATA
1 ATATATA
100913968 CGTAATATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
11 4 0.11
12 9 0.24
13 13 0.35
14 11 0.30
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (13 bp):
ATATATAAATAAA
Found at i:100913962 original size:51 final size:48
Alignment explanation
Indices: 100913903--100914025 Score: 129
Period size: 51 Copynumber: 2.5 Consensus size: 48
100913893 AACATGTAGA
*
100913903 AAAAAATATATATAAATAATATAATATTAAAGATATATAAATAAAATAGT
1 AAAAAATATATATAAATAATATAAAATTAAA-A-ATATAAATAAAATAGT
** * ** * *
100913953 ATAAAAATATATATACGTAATATAAAATTTAAAATATACCTAATATATT
1 A-AAAAATATATATAAATAATATAAAATTAAAAATATAAATAAAATAGT
100914002 AAAAGAATATATATAATATAATAT
1 AAAA-AATATATATAA-ATAATAT
100914026 TAAGAAATAT
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
48 3 0.05
49 23 0.38
50 8 0.13
51 26 0.43
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.34
Consensus pattern (48 bp):
AAAAAATATATATAAATAATATAAAATTAAAAATATAAATAAAATAGT
Found at i:100914559 original size:30 final size:30
Alignment explanation
Indices: 100914522--100914697 Score: 262
Period size: 30 Copynumber: 5.8 Consensus size: 30
100914512 TAGGTACAAG
* *
100914522 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
* *
100914552 TAGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
* * *
100914582 TGGTGGTGGACAAGGTGTGGCTAGTAGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
100914612 TGGTGGTGGAAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGG-AAAAGGAGTGGCTAGTGGAGT
*
100914643 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
100914673 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
100914698 TGAGAAAAGT
Statistics
Matches: 129, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
30 103 0.80
31 26 0.20
ACGTcount: A:0.23, C:0.04, G:0.48, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:100914652 original size:61 final size:60
Alignment explanation
Indices: 100914522--100914697 Score: 298
Period size: 61 Copynumber: 2.9 Consensus size: 60
100914512 TAGGTACAAG
* *
100914522 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTAGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
* *
100914582 TGGTGGTGGACAAGGTGTGGCTAGTAGAGTTGGTGGTGGAAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGG-AAAAAGAGTGGCTAGTGGAGT
*
100914643 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
100914698 TGAGAAAAGT
Statistics
Matches: 109, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
60 51 0.47
61 58 0.53
ACGTcount: A:0.23, C:0.04, G:0.48, T:0.25
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:100915422 original size:14 final size:14
Alignment explanation
Indices: 100915386--100915436 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
100915376 GAGTTGATTT
* *
100915386 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
100915400 TTGAAAAAAACAGAAA
1 TTG--AAAAACAGAAA
*
100915416 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
100915430 TT-AAAAA
1 TTGAAAAA
100915437 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
16 12 0.39
ACGTcount: A:0.65, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:100915483 original size:105 final size:105
Alignment explanation
Indices: 100915301--100915510 Score: 287
Period size: 105 Copynumber: 2.0 Consensus size: 105
100915291 TTGACTCTGT
* * * *
100915301 AAAACTAGACATTAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACAT
1 AAAACTAGAAATTAAAAACAGAAATTAAAAAGACCTCAGCACGTGAGCCAAGGCTCAACTCACAT
* * *
100915366 CTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAA
66 CTCGCAATATGAGTTAATTTTTGAAAAACAGAAATTGAAA
* * * * *
100915406 AAAAC-AGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCACC
1 AAAACTAGAAATT-AAAAACAGAAATTAAAAAGACCTCAGCACGTGAGCCAAGGCTCAACTCACA
*
100915470 TCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAA
65 TCTCGCAATATGAGTTAATTTTTGAAAAACAGAAATTGAAA
100915511 TTACCTCAGC
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
104 6 0.07
105 85 0.93
ACGTcount: A:0.44, C:0.17, G:0.16, T:0.23
Consensus pattern (105 bp):
AAAACTAGAAATTAAAAACAGAAATTAAAAAGACCTCAGCACGTGAGCCAAGGCTCAACTCACAT
CTCGCAATATGAGTTAATTTTTGAAAAACAGAAATTGAAA
Found at i:100915616 original size:75 final size:74
Alignment explanation
Indices: 100915416--100915641 Score: 319
Period size: 75 Copynumber: 3.0 Consensus size: 74
100915406 AAAACAGAAA
* * * **
100915416 TTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGT-CCT-GAGGCTCAACTCACCTCTCGCAATAT
*
100915481 GAGTT-AATTT
64 GAGTTGATTTT
* * * * *
100915491 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
100915556 GTTGATTTT
66 GTTGATTTT
100915565 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
100915630 AGTTGATTTT
65 AGTTGATTTT
100915640 TT
1 TT
100915642 TTTTACGAAC
Statistics
Matches: 133, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
73 30 0.23
74 17 0.13
75 86 0.65
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (74 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:100915667 original size:14 final size:14
Alignment explanation
Indices: 100915648--100915675 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
100915638 TTTTTTTTAC
100915648 GAACAGAAATTGAA
1 GAACAGAAATTGAA
100915662 GAACAGAAATTGAA
1 GAACAGAAATTGAA
100915676 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:100915685 original size:166 final size:165
Alignment explanation
Indices: 100915497--100915806 Score: 471
Period size: 166 Copynumber: 1.9 Consensus size: 165
100915487 ATTTTTGACA
** * * *
100915497 AACAGAAATTGAAATTACCTCAGC-GTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGA
1 AACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTT-A
* *
100915561 TTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTG-TCCTGAGGCTCAACTCACCTCTCGCA
65 ATTTTTAAAAAACAGAAA-TTAAAAATACCTCAGCGTGTTCC-GAGGCTCAACTCACCTCTCGCA
100915625 ATATGAGTTGATTTTTTTTTTACGAACAGAAATTGAAG
128 ATATGAGTTGATTTTTTTTTTACGAACAGAAATTGAAG
*
100915663 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAAGACCTCAGCA-GTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTA
* * *
100915728 ATTTTTAAAAAACAGAAATTGAAATTACCTCAGTGTGTTCCGAGGCTCAACTCACCTCTCGCAAT
65 ATTTTTAAAAAACAGAAATTAAAAATACCTCAGCGTGTTCCGAGGCTCAACTCACCTCTCGCAAT
100915793 ATGAGTTGATTTTT
130 ATGAGTTGATTTTT
100915807 GACAAACAGA
Statistics
Matches: 130, Mismatches: 11, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
166 76 0.58
167 20 0.15
168 34 0.26
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (165 bp):
AACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTAA
TTTTTAAAAAACAGAAATTAAAAATACCTCAGCGTGTTCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTTTTTTACGAACAGAAATTGAAG
Found at i:100915723 original size:93 final size:92
Alignment explanation
Indices: 100915565--100915733 Score: 243
Period size: 93 Copynumber: 1.8 Consensus size: 92
100915555 AGTTGATTTT
* * *
100915565 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGACTCAACTCACCTCTCGCAATATG
*
100915630 AGTTGATTTTTTTTTTACGAACAGAAA
66 AGTTAATTTTTTTTTTACGAACAGAAA
* *
100915657 TTGAAGAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGACTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAGACTCAACTCACCTCTCGCAAT
100915720 ATGAGTTAATTTTT
63 ATGAGTTAATTTTT
100915734 AAAAAACAGA
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
91 14 0.21
92 13 0.19
93 39 0.57
94 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (92 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGACTCAACTCACCTCTCGCAATATG
AGTTAATTTTTTTTTTACGAACAGAAA
Found at i:100915788 original size:73 final size:74
Alignment explanation
Indices: 100915663--100915825 Score: 231
Period size: 73 Copynumber: 2.2 Consensus size: 74
100915653 GAAATTGAAG
100915663 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAAGACCTCAG-ATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTA
100915728 ATTTTTAAAA
65 ATTTTTAAAA
** ** * *
100915738 AACAGAAATTGAAATTACCTCAG-TGTGTTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAGAAATTGAAAAGACCTCAGATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTAA
* *
100915802 TTTTTGACA
66 TTTTTAAAA
100915811 AACAGAAATT-AAAAG
1 AACAGAAATTGAAAAG
100915826 GCTTAACTCA
Statistics
Matches: 78, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
72 3 0.04
73 54 0.69
75 21 0.27
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (74 bp):
AACAGAAATTGAAAAGACCTCAGATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTAA
TTTTTAAAA
Found at i:100915852 original size:54 final size:55
Alignment explanation
Indices: 100915770--100915877 Score: 164
Period size: 54 Copynumber: 2.0 Consensus size: 55
100915760 GTGTGTTCCG
* * *
100915770 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA-AACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTAAA
* *
100915824 AGGCTTAACTCACTTCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTAA
1 AGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTAA
100915878 GAATACCTCA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
54 37 0.77
55 11 0.23
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (55 bp):
AGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTAAA
Found at i:100915931 original size:128 final size:127
Alignment explanation
Indices: 100915701--100916081 Score: 518
Period size: 128 Copynumber: 3.0 Consensus size: 127
100915691 GAGCCGAGAC
* * *
100915701 TCAACTCACCTCTCGCAATATGAGTTAATTTTTAAAAAACAGAAATTGAAATTACCTCAGTGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTG-
*
100915766 TCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTAAAAGGCT
65 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGG-T
* * * *
100915829 T-AACTCACTTCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATT-AAGAATACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-AACAGAAATTGAA-ATTACCTCAGCGT
* * *
100915892 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTGAAAAAGTAGAAATTAAAAGGT
64 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-CAGAAATTAAAAGGT
* * * *
100915956 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGT
* *
100916021 CCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTTAAAA
66 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAA-TTAAAA
100916082 ATACCTCAGC
Statistics
Matches: 220, Mismatches: 24, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
127 101 0.46
128 103 0.47
129 16 0.07
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (127 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGT
CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
Found at i:100916051 original size:73 final size:74
Alignment explanation
Indices: 100915956--100916133 Score: 259
Period size: 75 Copynumber: 2.4 Consensus size: 74
100915946 ATTAAAAGGT
* * * * * *
100915956 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAA-TTGAAATTACCTCATCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTCTTGAAAAACAAAAATTTAAAAATACCTCAGCGTG
100916020 TCCTGAGGC
66 TCCTGAGGC
* *
100916029 TCAACTCATCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTTAAAAATACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTCTTGAAAAACAAAAATTTAAAAATACCTCAGCGT
*
100916094 GTCTTGAGGC
65 GTCCTGAGGC
100916104 TCAACTCACCTCTCGCAATATGAGTTGATT
1 TCAACTCACCTCTCGCAATATGAGTTGATT
100916134 TTTTTTTACG
Statistics
Matches: 93, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
73 26 0.28
74 16 0.17
75 51 0.55
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.30
Consensus pattern (74 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTCTTGAAAAACAAAAATTTAAAAATACCTCAGCGTG
TCCTGAGGC
Found at i:100916106 original size:75 final size:73
Alignment explanation
Indices: 100915956--100916521 Score: 550
Period size: 73 Copynumber: 7.5 Consensus size: 73
100915946 ATTAAAAGGT
* * * *
100915956 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGT
*
100916021 CCTGAGGC
66 CTTGAGGC
* * * *
100916029 TCAACTCATCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTTAAAAATACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAAACAGAAA-TTGAAAATACCTCAGCGT
100916094 GTCTTGAGGC
64 GTCTTGAGGC
* * * **
100916104 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAGAACAGAAATTG
1 TCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGACAAACAGAAATTG-A-AA-A-TACCT-
* *
100916169 AAAAGACCTCAG-CATGTGA-GC
58 --CAG-CGT--GTC-T-TGAGGC
* * *
100916190 -CGAGGCTCAACTCACCTCTCGCAATATGAGTTCATTTTTGACAAACAGAAATTGAAATTACCTC
1 TC-A-ACTC-----ACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAATACCTC
**
100916254 AGCGTGTCCCGAGGC
59 AGCGTGTCTTGAGGC
* * *
100916269 TCAACTCACCTTTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAA-TTGAAAATACCTCAGCGTG
*
100916334 TCCTGAGGC
65 TCTTGAGGC
* * *
100916343 TCAACTCACCTCTCACAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--GT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGT
*
100916406 CTTGAGGT
66 CTTGAGGC
* *
100916414 TCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGA-AAGACAGAAATTGAAAATACCTCAACG
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAA-ACAGAAATTGAAAATACCTCAGCG
100916478 TGTCTTGAGGC
63 TGTCTTGAGGC
*
100916489 TCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
100916522 TTTGAAACAT
Statistics
Matches: 406, Mismatches: 55, Indels: 64
0.77 0.10 0.12
Matches are distributed among these distances:
71 34 0.08
72 2 0.00
73 107 0.26
74 80 0.20
75 86 0.21
76 2 0.00
77 15 0.04
78 7 0.02
79 5 0.01
80 4 0.01
81 2 0.00
82 2 0.00
83 2 0.00
84 2 0.00
85 4 0.01
86 5 0.01
87 8 0.02
88 1 0.00
89 18 0.04
92 20 0.05
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (73 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGT
CTTGAGGC
Found at i:100916162 original size:14 final size:14
Alignment explanation
Indices: 100916143--100916170 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
100916133 TTTTTTTTAC
100916143 GAACAGAAATTGAA
1 GAACAGAAATTGAA
100916157 GAACAGAAATTGAA
1 GAACAGAAATTGAA
100916171 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:100916522 original size:147 final size:146
Alignment explanation
Indices: 100916191--100916521 Score: 504
Period size: 147 Copynumber: 2.3 Consensus size: 146
100916181 CATGTGAGCC
* *
100916191 GAGGCTCAACTCACCTCTCGCAATATGAGTTCATTTTTGACAAACAGAAATTGAAATTACCTCAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAG
* *
100916256 CGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
66 CG-GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAACAGAAATTTAAAA
*
100916321 ATACCTCAGCGTGTCCT
130 ATACCTCAACGTGTCCT
*
100916338 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAG
** * * *
100916403 C-GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAA-TTGAA
66 CGGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA--TTTTTGAAAAACAGAAATTTAAA
*
100916466 AATACCTCAACGTGTCTT
129 AATACCTCAACGTGTCCT
*
100916484 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
100916522 TTTGAAACAT
Statistics
Matches: 168, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
145 33 0.20
146 56 0.33
147 79 0.47
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.30
Consensus pattern (146 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAG
CGGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAACAGAAATTTAAAAA
TACCTCAACGTGTCCT
Found at i:100916650 original size:99 final size:99
Alignment explanation
Indices: 100916539--100916755 Score: 330
Period size: 99 Copynumber: 2.2 Consensus size: 99
100916529 CATAAATTAA
*
100916539 AAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTATCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
100916603 TGA-TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
65 TGATTTTGAAAAACAGAAATT-AAAAGCAAAAATTG
100916638 AAAAACAGAAATTGAAAATACCTCAGCGTATCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTATCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
100916703 GATTTTTGAAAAACAGAAATTAAAAGCAGAAATTG
66 GA-TTTTGAAAAACAGAAATTAAAAGCAAAAATTG
*
100916738 AAAAGCAGAAATTGAAAA
1 AAAAACAGAAATTGAAAA
100916756 ACAGAAATTA
Statistics
Matches: 108, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
99 64 0.59
100 29 0.27
101 15 0.14
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (99 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTATCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTGAAAAACAGAAATTAAAAGCAAAAATTG
Found at i:100916743 original size:14 final size:14
Alignment explanation
Indices: 100916708--100916769 Score: 92
Period size: 14 Copynumber: 4.6 Consensus size: 14
100916698 GAGTTGATTT
100916708 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
100916722 TT-AAAAGCAGAAA
1 TTGAAAAACAGAAA
*
100916735 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
100916749 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
100916763 TT-AAAAA
1 TTGAAAAA
100916770 TACCTCGGCG
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
13 17 0.38
14 28 0.62
ACGTcount: A:0.63, C:0.06, G:0.15, T:0.16
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:100916746 original size:27 final size:28
Alignment explanation
Indices: 100916708--100916769 Score: 92
Period size: 27 Copynumber: 2.3 Consensus size: 28
100916698 GAGTTGATTT
*
100916708 TTGAAAAACAGAAATT-AAAAGCAGAAA
1 TTGAAAAACAGAAATTGAAAAACAGAAA
*
100916735 TTGAAAAGCAGAAATTGAAAAACAGAAA
1 TTGAAAAACAGAAATTGAAAAACAGAAA
100916763 TT-AAAAA
1 TTGAAAAA
100916770 TACCTCGGCG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 19 0.61
28 12 0.39
ACGTcount: A:0.63, C:0.06, G:0.15, T:0.16
Consensus pattern (28 bp):
TTGAAAAACAGAAATTGAAAAACAGAAA
Found at i:100916810 original size:114 final size:114
Alignment explanation
Indices: 100916610--100916837 Score: 339
Period size: 114 Copynumber: 2.0 Consensus size: 114
100916600 AGTTGATTTG
* * * * * *
100916610 AAAAGCAGAATTTGTAAGGCAAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTATCCTGAG
1 AAAAGCAGAAATTGAAAAGCAAAAATTGAAAAACAGAAATTAAAAATACCTCAGCGTACCCCGAG
*
100916675 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT
66 GCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATT
* * *
100916724 AAAAGCAGAAATTGAAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAG
1 AAAAGCAGAAATTGAAAAGCAAAAATTGAAAAACAGAAATTAAAAATACCTCAGCGTACCCCGAG
* * *
100916789 GCTCAGCTCACCTCTCACAATATGAGTTGATTTTTGAAAAGCATAAATT
66 GCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATT
100916838 GAAATTACCT
Statistics
Matches: 101, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
114 101 1.00
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (114 bp):
AAAAGCAGAAATTGAAAAGCAAAAATTGAAAAACAGAAATTAAAAATACCTCAGCGTACCCCGAG
GCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATT
Found at i:100916872 original size:73 final size:74
Alignment explanation
Indices: 100916749--100916917 Score: 223
Period size: 73 Copynumber: 2.3 Consensus size: 74
100916739 AAAGCAGAAA
* * * * *
100916749 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCACAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
100916814 GTTGA-TTT
66 GTTGATTTT
* * ** * *
100916822 TTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGG
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
100916887 GTTGATTTTT
66 GTTGA-TTTT
100916897 TTGAAAAGCATAAATTGAAAA
1 TTGAAAAGCATAAATTGAAAA
100916918 AAAGGAAATT
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
73 59 0.72
75 23 0.28
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (74 bp):
TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTT
Found at i:100922892 original size:37 final size:37
Alignment explanation
Indices: 100922835--100922986 Score: 173
Period size: 37 Copynumber: 3.9 Consensus size: 37
100922825 TATGATCACT
*
100922835 TATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCACC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
* *
100922870 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACT
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
100922907 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCAC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGC-----C-A-C-C
*
100922952 TTATCACTTTGTCTCTTGATCAGATAAGTATAGCC
1 -TATCACTTTGTCTCTTGATCAGATAAGTGTAGCC
100922987 GAAGCTATCA
Statistics
Matches: 100, Mismatches: 6, Indels: 16
0.82 0.05 0.13
Matches are distributed among these distances:
35 6 0.06
36 4 0.04
37 54 0.54
41 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
46 32 0.32
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (37 bp):
TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
Found at i:100922970 original size:46 final size:48
Alignment explanation
Indices: 100922903--100923162 Score: 312
Period size: 52 Copynumber: 5.2 Consensus size: 48
100922893 TAAGTGTAGC
* *
100922903 CACTTATCAC-T-TTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTCTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * *
100922949 CACTTATCAC-T-TTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTCTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
*
100922995 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC--TT--CTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
100923047 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC-TT---CTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
100923099 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC-TT---CTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
100923151 CACTTATCACTT
1 CACTTATCACTT
100923163 TAACACTTGA
Statistics
Matches: 199, Mismatches: 8, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
46 53 0.27
49 1 0.01
51 5 0.03
52 140 0.70
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (48 bp):
CACTTATCACTTCTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
Found at i:100923022 original size:52 final size:52
Alignment explanation
Indices: 100922946--100923163 Score: 348
Period size: 52 Copynumber: 4.2 Consensus size: 52
100922936 TAGCTAAAGC
* *
100922946 TATCACTTAT-CACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTT-TCCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
*
100922999 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
*
100923051 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
** *
100923103 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
100923155 TATCACTTT
1 TATCACTTT
100923164 AACACTTGAT
Statistics
Matches: 158, Mismatches: 6, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
52 147 0.93
53 11 0.07
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
Found at i:100923110 original size:104 final size:100
Alignment explanation
Indices: 100922903--100923163 Score: 382
Period size: 104 Copynumber: 2.6 Consensus size: 100
100922893 TAAGTGTAGC
* * *
100922903 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCAC--TTTGTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTTGTCA
100922966 CTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 CTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
100923002 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTT----TTG
* *
100923067 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
62 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
100923106 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTT
100923164 AACACTTGAT
Statistics
Matches: 145, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
98 42 0.29
99 9 0.06
100 1 0.01
104 93 0.64
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (100 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTTGTCAC
TTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:100928322 original size:12 final size:12
Alignment explanation
Indices: 100928302--100928337 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
100928292 TGGGATATGC
*
100928302 AATGTATGAATG
1 AATGCATGAATG
100928314 AATGCATGAATG
1 AATGCATGAATG
100928326 AATGCATGAATG
1 AATGCATGAATG
100928338 TCAAAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:100929928 original size:16 final size:15
Alignment explanation
Indices: 100929907--100929954 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
100929897 GATGGGAATA
100929907 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
100929923 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
100929938 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
100929954 A
1 A
100929955 ATAATTAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:100929937 original size:8 final size:8
Alignment explanation
Indices: 100929903--100929954 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
100929893 CAATGATGGG
*
100929903 AATAATAA
1 AATATTAA
100929911 AATATATAA
1 AATAT-TAA
100929920 AATA-TAA
1 AATATTAA
100929927 AATATTAA
1 AATATTAA
*
100929935 AATATCAA
1 AATATTAA
*
100929943 AATATTAG
1 AATATTAA
100929951 AATA
1 AATA
100929955 ATAATTAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:100929954 original size:24 final size:24
Alignment explanation
Indices: 100929902--100929958 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
100929892 ACAATGATGG
*
100929902 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
100929926 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
100929950 GAATAATAA
1 GAATAATAA
100929959 TTAATATTGA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:100930164 original size:22 final size:24
Alignment explanation
Indices: 100930079--100930165 Score: 83
Period size: 25 Copynumber: 3.7 Consensus size: 24
100930069 TGTACATATA
* *
100930079 TAAAAATAAATACATGATAATA--T
1 TAAAAATATATACATAAT-ATAGGT
*
100930102 TAAAAATATGTACATAATATAGTGT
1 TAAAAATATATACATAATATAG-GT
*
100930127 TAAAAATACATACATAATATA-GT
1 TAAAAATATATACATAATATAGGT
*
100930150 T-AAGATATATACATAA
1 TAAAAATATATACATAA
100930166 GATAACATGT
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 18 0.33
25 20 0.37
ACGTcount: A:0.55, C:0.06, G:0.07, T:0.32
Consensus pattern (24 bp):
TAAAAATATATACATAATATAGGT
Found at i:100930236 original size:25 final size:25
Alignment explanation
Indices: 100930179--100930239 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 25
100930169 AACATGTAGA
*
100930179 AAAAAATATAT-AATAATATAATAT
1 AAAAAATATATAAATAAAATAATAT
* * *
100930203 TAAAGATATATAAATAAAATAGTAT
1 AAAAAATATATAAATAAAATAATAT
*
100930228 AAAATATATATA
1 AAAAAATATATA
100930240 TACGTAATAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 9 0.30
25 21 0.70
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (25 bp):
AAAAAATATATAAATAAAATAATAT
Found at i:100930239 original size:51 final size:46
Alignment explanation
Indices: 100930178--100930309 Score: 117
Period size: 46 Copynumber: 2.8 Consensus size: 46
100930168 TAACATGTAG
*
100930178 AAAAAAATATATAATAATATAATATTAAAGATATATAAATAAAATAGTAT
1 AAAAGAATATATAATAATATAATATT-AAGA-ATATAAATAAAATA-T-T
* * * ** *
100930228 AAAATATATATATACGTAATAAAAT-TTAA-AATATACCTAATATATT
1 AAAAGA-ATATATA-ATAATATAATATTAAGAATATAAATAAAATATT
100930274 AAAAGAATATAT-ATAATATAATATTAAGAAATATAA
1 AAAAGAATATATAATAATATAATATTAAG-AATATAA
100930310 TAATAACAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
43 8 0.12
44 4 0.06
45 6 0.09
46 12 0.18
47 1 0.01
48 11 0.16
49 1 0.01
50 7 0.10
51 9 0.13
52 8 0.12
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (46 bp):
AAAAGAATATATAATAATATAATATTAAGAATATAAATAAAATATT
Found at i:100930877 original size:29 final size:30
Alignment explanation
Indices: 100930794--100930907 Score: 176
Period size: 30 Copynumber: 3.8 Consensus size: 30
100930784 TAGGTACAAG
* *
100930794 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
* *
100930824 TAGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
100930854 TGGTGGTGGAAAAGGTGTGG-TAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
100930883 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
100930908 TGAGAAAAGT
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
29 28 0.37
30 47 0.63
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:100930893 original size:59 final size:60
Alignment explanation
Indices: 100930794--100930907 Score: 194
Period size: 59 Copynumber: 1.9 Consensus size: 60
100930784 TAGGTACAAG
*
100930794 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTAGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTAGTGGTGGAAAAAGAGTGGCTAGTGGAGT
* *
100930854 TGGTGGTGGAAAAGGTGTGG-TAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTAGTGGTGGAAAAAGAGTGGCTAGT
100930908 TGAGAAAAGT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
59 32 0.63
60 19 0.37
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTAGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:100934257 original size:29 final size:28
Alignment explanation
Indices: 100934225--100934287 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
100934215 ATTTATTTTG
100934225 TTATTCTAATACTATTATTAT-TTATCTAT
1 TTATT-TAATACTATTATTATATT-TCTAT
**
100934254 TTATATTTCTACTATTATTATATTTCTAT
1 TTAT-TTAATACTATTATTATATTTCTAT
100934283 TTATT
1 TTATT
100934288 ATATATTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 1 0.03
29 26 0.87
30 3 0.10
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.62
Consensus pattern (28 bp):
TTATTTAATACTATTATTATATTTCTAT
Found at i:100934322 original size:44 final size:44
Alignment explanation
Indices: 100934239--100934322 Score: 98
Period size: 44 Copynumber: 1.9 Consensus size: 44
100934229 TCTAATACTA
* * * *
100934239 TTATTATTTATCTATTTATATTTCTACTATTATTATATTTCTAT
1 TTATTATATATCTATTTATATTTATACTACTAATATATTTCTAT
* *
100934283 TTATTATATATTTATTTCTATTTATA-TACTAATATTATTT
1 TTATTATATATCTATTTATATTTATACTACTAATA-TATTT
100934323 TCATTATTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
43 6 0.18
44 27 0.82
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (44 bp):
TTATTATATATCTATTTATATTTATACTACTAATATATTTCTAT
Found at i:100935530 original size:35 final size:35
Alignment explanation
Indices: 100935450--100935633 Score: 289
Period size: 35 Copynumber: 5.3 Consensus size: 35
100935440 GGTTTCGACA
*
100935450 GTAGGTATGGTATCATCCATACCGAGTTATGAAA-
1 GTAGGTATGGTATCATCCATACCGAGTTGTGAAAC
100935484 GTAGGTATGGTATCATCCATACCGAGTTGTGAAAC
1 GTAGGTATGGTATCATCCATACCGAGTTGTGAAAC
* *
100935519 GTAGGTATGGTATCATCTATACCGAGTTGTGAAAT
1 GTAGGTATGGTATCATCCATACCGAGTTGTGAAAC
* * * *
100935554 GTAGGTATGGTATTAACCACATCGAGTTGTGAAAC
1 GTAGGTATGGTATCATCCATACCGAGTTGTGAAAC
*
100935589 GTAGGTATGGTATCATCCATACCGAGTTGTGGAAC
1 GTAGGTATGGTATCATCCATACCGAGTTGTGAAAC
100935624 GTAGGTATGG
1 GTAGGTATGG
100935634 CATCCGAATC
Statistics
Matches: 135, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
34 33 0.24
35 102 0.76
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (35 bp):
GTAGGTATGGTATCATCCATACCGAGTTGTGAAAC
Found at i:100935896 original size:35 final size:35
Alignment explanation
Indices: 100935817--100936108 Score: 338
Period size: 35 Copynumber: 8.4 Consensus size: 35
100935807 GTTTCGACAA
* *
100935817 TAGGTATGGTATCATCCATACCGAGTTATGAAA-G
1 TAGGTATGGTATTATCCATACCGAGTTGTGAAACG
* *
100935851 TAGGTATGGTATTAACCATATCGAGTTGTGAAACG
1 TAGGTATGGTATTATCCATACCGAGTTGTGAAACG
* * *
100935886 TAGGTATGGTATTAACCATATCGAATTGTGAAACG
1 TAGGTATGGTATTATCCATACCGAGTTGTGAAACG
* * * *
100935921 TAGGTATGGTATCATCCATTCTGAGTTGTGGAACG
1 TAGGTATGGTATTATCCATACCGAGTTGTGAAACG
* * *
100935956 TAGGTATGGCATCATCCATACCGAGTTGTGGAACG
1 TAGGTATGGTATTATCCATACCGAGTTGTGAAACG
** * *
100935991 TAGGTATTTTATCATCTATACCGAGTTGTGAAACG
1 TAGGTATGGTATTATCCATACCGAGTTGTGAAACG
* * **
100936026 TAGGTATGTTATTATCCATACTGAGTTAAGAAACG
1 TAGGTATGGTATTATCCATACCGAGTTGTGAAACG
*
100936061 TAGGTAT-GTCATT-TCCCATACCGAGTTGTGAAATG
1 TAGGTATGGT-ATTAT-CCATACCGAGTTGTGAAACG
100936096 TAGGTATGGTATT
1 TAGGTATGGTATT
100936109 TTCAATGAGG
Statistics
Matches: 223, Mismatches: 31, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
34 31 0.14
35 190 0.85
36 2 0.01
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (35 bp):
TAGGTATGGTATTATCCATACCGAGTTGTGAAACG
Found at i:100935950 original size:366 final size:366
Alignment explanation
Indices: 100935278--100935997 Score: 1235
Period size: 366 Copynumber: 2.0 Consensus size: 366
100935268 CTCTCAAATT
* * *
100935278 CGTCTTCTAGTTTTTTGTAGACCAAAAACGTTGTTTTAATAAACCAAAATGTTTTATTAAAATGA
1 CGTCTTCTAGTTTTTCGTAAACCAAAAACATTGTTTTAATAAACCAAAATGTTTTATTAAAATGA
* *
100935343 TCGACCACAGTGTGACCCGATCACACCTAAACAAAAAGGATTGGTGGCGACTCTATGCCTTGTTT
66 TCGACCACAGGGTGACCCGATCACACCTAAACAAAAAGGATTGGTGGCGACTCTATACCTTGTTT
*
100935408 AAAAGTCGATCCCCATTTTCCAAAATAAAAATGGTTTCGACAGTAGGTATGGTATCATCCATACC
131 AAAAGTCGATCCCCATTTTCCAAAATAAAAATGGTTTCGACAATAGGTATGGTATCATCCATACC
* * *
100935473 GAGTTATGAAAGTAGGTATGGTATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATCATCTA
196 GAGTTATGAAAGTAGGTATGGTATCAACCATACCGAGTTGTGAAACGTAGGTATGGTATCAACCA
* * * *
100935538 TACCGAGTTGTGAAATGTAGGTATGGTATTAACCACATCGAGTTGTGAAACGTAGGTATGGTATC
261 TACCGAATTGTGAAACGTAGGTATGGTATCAACCACATCGAGTTGTGAAACGTAGGTATGGCATC
100935603 ATCCATACCGAGTTGTGGAACGTAGGTATGGCATCCGAATC
326 ATCCATACCGAGTTGTGGAACGTAGGTATGGCATCCGAATC
100935644 CGTCTTCTAGTTTTTCGTAAACCAAAAACATTGTTTTAATAAACCAAAATGTTTTATTAAAATGA
1 CGTCTTCTAGTTTTTCGTAAACCAAAAACATTGTTTTAATAAACCAAAATGTTTTATTAAAATGA
100935709 TCGACCACAGGGTGACCCGATCACACCTAAACAAAAAGGATTGGTGGCGACTCTATACCTTGTTT
66 TCGACCACAGGGTGACCCGATCACACCTAAACAAAAAGGATTGGTGGCGACTCTATACCTTGTTT
*
100935774 AAAAGTCGATCCCCGTTTTCCAAAATAAAAATGGTTTCGACAATAGGTATGGTATCATCCATACC
131 AAAAGTCGATCCCCATTTTCCAAAATAAAAATGGTTTCGACAATAGGTATGGTATCATCCATACC
* * *
100935839 GAGTTATGAAAGTAGGTATGGTATTAACCATATCGAGTTGTGAAACGTAGGTATGGTATTAACCA
196 GAGTTATGAAAGTAGGTATGGTATCAACCATACCGAGTTGTGAAACGTAGGTATGGTATCAACCA
* * * *
100935904 TATCGAATTGTGAAACGTAGGTATGGTATCATCCA-TTCTGAGTTGTGGAACGTAGGTATGGCAT
261 TACCGAATTGTGAAACGTAGGTATGGTATCAACCACATC-GAGTTGTGAAACGTAGGTATGGCAT
100935968 CATCCATACCGAGTTGTGGAACGTAGGTAT
325 CATCCATACCGAGTTGTGGAACGTAGGTAT
100935998 TTTATCATCT
Statistics
Matches: 332, Mismatches: 21, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
365 2 0.01
366 330 0.99
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (366 bp):
CGTCTTCTAGTTTTTCGTAAACCAAAAACATTGTTTTAATAAACCAAAATGTTTTATTAAAATGA
TCGACCACAGGGTGACCCGATCACACCTAAACAAAAAGGATTGGTGGCGACTCTATACCTTGTTT
AAAAGTCGATCCCCATTTTCCAAAATAAAAATGGTTTCGACAATAGGTATGGTATCATCCATACC
GAGTTATGAAAGTAGGTATGGTATCAACCATACCGAGTTGTGAAACGTAGGTATGGTATCAACCA
TACCGAATTGTGAAACGTAGGTATGGTATCAACCACATCGAGTTGTGAAACGTAGGTATGGCATC
ATCCATACCGAGTTGTGGAACGTAGGTATGGCATCCGAATC
Found at i:100936741 original size:22 final size:22
Alignment explanation
Indices: 100936698--100936751 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
100936688 AAGAAAGACT
* * *
100936698 TGTTATTGTTTCCATTATTTTGG
1 TGTTATT-TTACCACTATTTTGC
100936721 TGTTATTTTACCACTATTTTGC
1 TGTTATTTTACCACTATTTTGC
*
100936743 TGTCATTTT
1 TGTTATTTT
100936752 GCAATTATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 20 0.74
23 7 0.26
ACGTcount: A:0.15, C:0.13, G:0.13, T:0.59
Consensus pattern (22 bp):
TGTTATTTTACCACTATTTTGC
Found at i:100938712 original size:11 final size:10
Alignment explanation
Indices: 100938698--100938772 Score: 53
Period size: 11 Copynumber: 6.9 Consensus size: 10
100938688 TATTTTATTG
100938698 CTATTTTGCTA
1 CTATTTT-CTA
100938709 CTATTTTCTTA
1 CTATTTTC-TA
* *
100938720 TTGTTTTCTCA
1 CTATTTTCT-A
100938731 CTATTTTACTA
1 CTATTTT-CTA
100938742 CTATTTTACTA
1 CTATTTT-CTA
*
100938753 TTATGTTAT-TA
1 CTAT-TT-TCTA
100938764 CTATTTTCT
1 CTATTTTCT
100938773 TGTTGTTTGG
Statistics
Matches: 52, Mismatches: 6, Indels: 13
0.73 0.08 0.18
Matches are distributed among these distances:
9 1 0.02
10 5 0.10
11 41 0.79
12 4 0.08
13 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.04, T:0.60
Consensus pattern (10 bp):
CTATTTTCTA
Found at i:100938748 original size:22 final size:22
Alignment explanation
Indices: 100938688--100938770 Score: 62
Period size: 22 Copynumber: 3.8 Consensus size: 22
100938678 AAAAAAAATT
* * *
100938688 TATTTTATTGCTATTTTGCTAC
1 TATTTTACTACTATTTTACTAC
* *
100938710 TATTTT-CTTATTGTTTT-CTCAC
1 TATTTTAC-TACTATTTTACT-AC
*
100938732 TATTTTACTACTATTTTACTAT
1 TATTTTACTACTATTTTACTAC
* *
100938754 TATGTTATTACTATTTT
1 TATTTTACTACTATTTT
100938771 CTTGTTGTTT
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
21 2 0.04
22 43 0.90
23 3 0.06
ACGTcount: A:0.20, C:0.13, G:0.05, T:0.61
Consensus pattern (22 bp):
TATTTTACTACTATTTTACTAC
Found at i:100938767 original size:33 final size:33
Alignment explanation
Indices: 100938687--100938770 Score: 98
Period size: 33 Copynumber: 2.5 Consensus size: 33
100938677 CAAAAAAAAT
* *
100938687 TTATTTTATTGCTATTTTGCTACTATTTTCTTA
1 TTATTTTATTACTATTTTACTACTATTTTCTTA
* * *
100938720 TTGTTTTCTCACTATTTTACTACTATTTTAC-TA
1 TTATTTTATTACTATTTTACTACTATTTT-CTTA
*
100938753 TTATGTTATTACTATTTT
1 TTATTTTATTACTATTTT
100938771 CTTGTTGTTT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
33 40 0.98
34 1 0.02
ACGTcount: A:0.20, C:0.13, G:0.05, T:0.62
Consensus pattern (33 bp):
TTATTTTATTACTATTTTACTACTATTTTCTTA
Found at i:100947226 original size:30 final size:30
Alignment explanation
Indices: 100947182--100947244 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
100947172 AATTAATAAG
*
100947182 CAAATGTCTCTAAAATAATAAAAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
* *
100947212 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
100947242 CAA
1 CAA
100947245 TAAAATAAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.59, C:0.13, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAAAAAAATTAA
Found at i:100947299 original size:22 final size:22
Alignment explanation
Indices: 100947274--100947316 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
100947264 TATCTAAATA
100947274 ATAATAATAAAATAGTAGCAAC
1 ATAATAATAAAATAGTAGCAAC
* *
100947296 ATAATAGTAAAATGGTAGCAA
1 ATAATAATAAAATAGTAGCAA
100947317 AATAGGGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.56, C:0.07, G:0.14, T:0.23
Consensus pattern (22 bp):
ATAATAATAAAATAGTAGCAAC
Found at i:100947743 original size:30 final size:31
Alignment explanation
Indices: 100947709--100947766 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 31
100947699 GTTATTAATA
100947709 TTTTAGATCATTTCTA-TTTGGTCACTTACG
1 TTTTAGATCATTTCTATTTTGGTCACTTACG
*
100947739 TTTTAGATCGTTTCTATTTTGGTCACTT
1 TTTTAGATCATTTCTATTTTGGTCACTT
100947767 TTCGTCAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 15 0.58
31 11 0.42
ACGTcount: A:0.17, C:0.16, G:0.14, T:0.53
Consensus pattern (31 bp):
TTTTAGATCATTTCTATTTTGGTCACTTACG
Found at i:100951115 original size:40 final size:41
Alignment explanation
Indices: 100951056--100951287 Score: 303
Period size: 40 Copynumber: 5.8 Consensus size: 41
100951046 AATTTGAATG
* * *
100951056 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* *
100951096 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * *
100951136 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
100951176 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
100951216 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
100951256 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
100951288 TTGTGGTTAT
Statistics
Matches: 168, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
39 2 0.01
40 161 0.96
41 5 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:100951270 original size:120 final size:120
Alignment explanation
Indices: 100951056--100951307 Score: 418
Period size: 120 Copynumber: 2.1 Consensus size: 120
100951046 AATTTGAATG
* * *
100951056 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
100951121 TTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
66 TTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
100951176 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGC
* *
100951240 ATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
65 ATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
100951296 ATATCC-GGCTAA
1 ATATCCGGGCTAA
100951308 ATTCCGAAGA
Statistics
Matches: 123, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
119 6 0.05
120 114 0.93
121 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:100951303 original size:80 final size:80
Alignment explanation
Indices: 100951056--100951287 Score: 340
Period size: 80 Copynumber: 2.9 Consensus size: 80
100951046 AATTTGAATG
* *
100951056 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
*
100951121 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGAT
* * *
100951136 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
100951201 TTTGTGCGAGTTGAT
66 TTTGTGCGAGTTGAT
* * * * *
100951216 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGC
*
100951280 AATTGTGC
65 ATTTGTGC
100951288 TTGTGGTTAT
Statistics
Matches: 136, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
80 134 0.99
81 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGAT
Found at i:100952993 original size:14 final size:14
Alignment explanation
Indices: 100952974--100953003 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
100952964 ACTATCATTT
100952974 TACTATTATGTTGC
1 TACTATTATGTTGC
*
100952988 TACTATTTTGTTGC
1 TACTATTATGTTGC
100953002 TA
1 TA
100953004 TTGTTAGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.53
Consensus pattern (14 bp):
TACTATTATGTTGC
Found at i:100953703 original size:16 final size:16
Alignment explanation
Indices: 100953636--100953706 Score: 90
Period size: 16 Copynumber: 4.4 Consensus size: 16
100953626 GTTTGGTTCA
100953636 CTGTAATGGAATA-AGG
1 CTGTAATGGAATAGA-G
* *
100953652 CTATAATTGAATAGAG
1 CTGTAATGGAATAGAG
* *
100953668 CTGCAATTGAATAGAG
1 CTGTAATGGAATAGAG
100953684 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
100953700 CTGTAAT
1 CTGTAAT
100953707 CAGTAATTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
16 47 0.98
17 1 0.02
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:100953789 original size:16 final size:16
Alignment explanation
Indices: 100953768--100953806 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
100953758 GTTTGGTTCA
* *
100953768 CTGTAATGGAATGGGG
1 CTGTAATGGAATAGAG
*
100953784 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
100953800 CTGTAAT
1 CTGTAAT
100953807 CAGTAATTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:100953874 original size:44 final size:46
Alignment explanation
Indices: 100953788--100953880 Score: 147
Period size: 44 Copynumber: 2.1 Consensus size: 46
100953778 ATGGGGCTGT
100953788 AATTGAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
1 AATTGAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
*
100953834 AATTGAATAGAGCTGTAAT-AG-AATTC-TTGTGTTTGGTTGAATGG
1 AATTGAATAGAGCTGTAATCAGTAATTCAAT-TGTTTGGTTGAATGG
100953878 AAT
1 AAT
100953881 AGATGTTGTA
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
43 1 0.02
44 23 0.51
45 2 0.04
46 19 0.42
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38
Consensus pattern (46 bp):
AATTGAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
Found at i:100953881 original size:39 final size:42
Alignment explanation
Indices: 100953792--100953896 Score: 110
Period size: 44 Copynumber: 2.5 Consensus size: 42
100953782 GGCTGTAATT
100953792 GAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGGAA
1 GAATAGAGCTGTAAT-AGTAATTCAATTGTTTGGTTGAATGG-A
*
100953836 TTGAATAGAGCTGTAATAG-AATTC-TTGTGTTTGGTTGAAT-G-
1 --GAATAGAGCTGTAATAGTAATTCAAT-TGTTTGGTTGAATGGA
*
100953877 GAATAGATGTTGTAATAGTA
1 GAATAGA-GCTGTAATAGTA
100953897 TAAGGAAAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
39 7 0.13
40 9 0.17
41 1 0.02
43 2 0.04
44 18 0.33
45 2 0.04
46 15 0.28
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (42 bp):
GAATAGAGCTGTAATAGTAATTCAATTGTTTGGTTGAATGGA
Found at i:100953983 original size:25 final size:26
Alignment explanation
Indices: 100953954--100954003 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
100953944 TAGGTAAATA
*
100953954 ATTATTGTT-ATTAAATTTTAATAAG
1 ATTATTGTTAAATAAATTTTAATAAG
*
100953979 ATTATTGTTAAATATATTTTAATAA
1 ATTATTGTTAAATAAATTTTAATAA
100954004 AAATAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (26 bp):
ATTATTGTTAAATAAATTTTAATAAG
Found at i:100958557 original size:2 final size:2
Alignment explanation
Indices: 100958491--100958540 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
100958481 TCTTTGGTCA
*
100958491 TC TC TC TC TC TC CC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
100958533 TC TC TC TC
1 TC TC TC TC
100958541 AGAGGTATCT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
TC
Found at i:100968201 original size:15 final size:15
Alignment explanation
Indices: 100968181--100968213 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
100968171 AATACGAGAG
100968181 AAAGAAGAAAAAGAA
1 AAAGAAGAAAAAGAA
100968196 AAAGAAGAAAAAGAA
1 AAAGAAGAAAAAGAA
100968211 AAA
1 AAA
100968214 AACTTTATGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (15 bp):
AAAGAAGAAAAAGAA
Found at i:100971860 original size:43 final size:43
Alignment explanation
Indices: 100971778--100971861 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
100971768 AGTAAGACCA
* *
100971778 TGGCATCGATATGTGTTTACGAATAAGACCCTGTTTGGGACAG
1 TGGCATCGATATGTGGTTACGAATAAGACCCTGTCTGGGACAG
*
100971821 TGGCATCGATATGTGGTTAC-ATGTAAGACCAC-GTCTGGGAC
1 TGGCATCGATATGTGGTTACGA-ATAAGACC-CTGTCTGGGAC
100971862 GTTCGCATTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 34 0.94
44 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
TGGCATCGATATGTGGTTACGAATAAGACCCTGTCTGGGACAG
Found at i:100975682 original size:28 final size:28
Alignment explanation
Indices: 100975645--100975723 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
100975635 GCAATCAAAT
* *
100975645 ATGGTACTTAGTGTACGAAATATTAAGA
1 ATGGCACTTAGTGTGCGAAATATTAAGA
* *
100975673 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTAAGA
* *
100975701 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
100975724 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTAAGA
Done.