Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 313 of 325
Found at i:101180914 original size:35 final size:37
Alignment explanation
Indices: 101180844--101180941 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 37
101180834 ATAATCTTCA
*
101180844 ATGATATGCAATCTTAGATGTGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
101180882 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
101180917 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
101180942 ATTTTGTAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
35 22 0.39
36 18 0.32
37 10 0.18
38 6 0.11
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:101180960 original size:22 final size:22
Alignment explanation
Indices: 101180844--101180957 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
101180834 ATAATCTTCA
101180844 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
101180863 GTGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
101180882 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
101180899 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
101180917 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
101180939 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
101180958 GATTTAATTT
Statistics
Matches: 84, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 32 0.38
22 8 0.10
23 12 0.14
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:101186644 original size:7 final size:7
Alignment explanation
Indices: 101186632--101186694 Score: 60
Period size: 7 Copynumber: 9.0 Consensus size: 7
101186622 AAAAAAAAGG
101186632 GAAAAAA
1 GAAAAAA
*
101186639 -AGAAAA
1 GAAAAAA
*
101186645 -AAAAGA
1 GAAAAAA
101186651 GAAAAAA
1 GAAAAAA
101186658 -ATAAAAA
1 GA-AAAAA
101186665 GAAAAATGA
1 GAAAAA--A
101186674 GAAAAAA
1 GAAAAAA
101186681 GAAAAAA
1 GAAAAAA
101186688 GAAAAAA
1 GAAAAAA
101186695 TGGAGAGGCC
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
6 10 0.21
7 29 0.62
8 1 0.02
9 7 0.15
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (7 bp):
GAAAAAA
Found at i:101186655 original size:16 final size:15
Alignment explanation
Indices: 101186635--101186694 Score: 68
Period size: 16 Copynumber: 3.8 Consensus size: 15
101186625 AAAAAGGGAA
101186635 AAAAAGAAAAAAAAG
1 AAAAAGAAAAAAAAG
101186650 AGAAAA-AAATAAAAAG
1 A-AAAAGAAA-AAAAAG
*
101186666 AAAAATGAGAAAAAAG
1 AAAAA-GAAAAAAAAG
101186682 AAAAAAGAAAAAA
1 -AAAAAGAAAAAA
101186695 TGGAGAGGCC
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
15 8 0.21
16 23 0.61
17 7 0.18
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.03
Consensus pattern (15 bp):
AAAAAGAAAAAAAAG
Found at i:101186669 original size:23 final size:23
Alignment explanation
Indices: 101186634--101186694 Score: 79
Period size: 23 Copynumber: 2.6 Consensus size: 23
101186624 AAAAAAGGGA
101186634 AAAAAAGAAAAAAAAGAGAAAAAA-
1 AAAAAAG--AAAAAAGAGAAAAAAG
*
101186658 ATAAAAAGAAAAATGAGAAAAAAG
1 A-AAAAAGAAAAAAGAGAAAAAAG
101186682 AAAAAAGAAAAAA
1 AAAAAAGAAAAAA
101186695 TGGAGAGGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
23 25 0.76
24 2 0.06
25 6 0.18
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (23 bp):
AAAAAAGAAAAAAGAGAAAAAAG
Found at i:101186694 original size:9 final size:9
Alignment explanation
Indices: 101186622--101186687 Score: 51
Period size: 10 Copynumber: 6.7 Consensus size: 9
101186612 CTTTTATTTC
101186622 AAAAAAAAGG
1 AAAAAAAA-G
*
101186632 GAAAAAAAG
1 AAAAAAAAG
101186641 AAAAAAAAGAG
1 -AAAAAAA-AG
*
101186652 AAAAAAATAA
1 AAAAAAA-AG
101186662 AAAGAAAAATG
1 AAA-AAAAA-G
*
101186673 AGAAAAAAG
1 AAAAAAAAG
101186682 AAAAAA
1 AAAAAA
101186688 GAAAAAATGG
Statistics
Matches: 45, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
9 7 0.16
10 30 0.67
11 8 0.18
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:101187786 original size:79 final size:79
Alignment explanation
Indices: 101187642--101187838 Score: 277
Period size: 79 Copynumber: 2.4 Consensus size: 79
101187632 CAAAATTCAG
** *
101187642 CGCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAATAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTA
*
101187707 GTGGAGTAGATCGAAGACT
61 GTGGAGCAGATCGAAGACT
* * * *
101187726 TGCCTTAATCCCTTAAGTAGTAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGCAGTAGTGGA
1 CGCCTTAATCCCCTAAGCAATAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGCAGTAGTGGA
101187791 GCAGATCGAAGACT
66 GCAGATCGAAGACT
101187805 CGCCTTAATCCCCTAAGCAATAGGGTAACAGGTT
1 CGCCTTAATCCCCTAAGCAATAGGGTAACAGGTT
101187839 AAATTTGCGG
Statistics
Matches: 103, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
79 75 0.73
84 28 0.27
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.26
Consensus pattern (79 bp):
CGCCTTAATCCCCTAAGCAATAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGCAGTAGTGGA
GCAGATCGAAGACT
Found at i:101187819 original size:41 final size:40
Alignment explanation
Indices: 101187695--101187823 Score: 124
Period size: 41 Copynumber: 3.2 Consensus size: 40
101187685 GATCTTATCT
*
101187695 CCCTAAGCAGTAGTGGAGTAGATCGAAGACTTGCCTTAATC
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGAC-TGCCTTAATC
* * * * *
101187736 CCTTAAGTAGTAG-GGTAACAGGTTCGCAGA-T--CTT-ATC
1 CCCTAAGCAGTAGTGG-AGCA-GATCGAAGACTGCCTTAATC
101187773 TCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGATCGAAGACT-GCCTTAATC
101187815 CCCTAAGCA
1 CCCTAAGCA
101187824 ATAGGGTAAC
Statistics
Matches: 68, Mismatches: 11, Indels: 18
0.70 0.11 0.19
Matches are distributed among these distances:
37 10 0.15
38 18 0.26
39 2 0.03
40 3 0.04
41 25 0.37
42 10 0.15
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (40 bp):
CCCTAAGCAGTAGTGGAGCAGATCGAAGACTGCCTTAATC
Found at i:101187886 original size:43 final size:43
Alignment explanation
Indices: 101187652--101188081 Score: 207
Period size: 43 Copynumber: 10.3 Consensus size: 43
101187642 CGCCTTAATC
*
101187652 CCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
** * * *
101187695 CCCTAAGCAGTAGTGG-AGTAGATCGAAGACTTGC----CTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATCT
* * *
101187736 CCTTAAGTAGTAGGGTAACAGG-----TTCGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * * * *
101187774 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C-G-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATCT
* *
101187815 CCCTAAGCAATAGGGTAACAGGTTAAATTTGCGGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* *
101187858 CCTTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * * * *
101187901 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C--ACCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATCT
* *
101187942 CACTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * * * * *
101187985 CCTTAAGCAGTAGTG-AAGCAGATCGAAGA-CT-C-G-CCTTAATC-
1 CCCTAAGCAGTAGGGTAA-CAGGT-TAA-ATTTGCAGATCTT-ATCT
* * *
101188026 CCCTAAACGGTAGGGTAACAGGTTAAATTTACAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
101188069 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
101188082 TGGAGCAGAT
Statistics
Matches: 281, Mismatches: 61, Indels: 90
0.65 0.14 0.21
Matches are distributed among these distances:
34 3 0.01
37 3 0.01
38 18 0.06
39 5 0.02
40 15 0.05
41 79 0.28
42 28 0.10
43 111 0.40
44 12 0.04
45 7 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
Found at i:101187914 original size:127 final size:122
Alignment explanation
Indices: 101187736--101187997 Score: 416
Period size: 127 Copynumber: 2.1 Consensus size: 122
101187726 TGCCTTAATC
101187736 CCTTAAGTAGTAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
1 CCTTAAGTAGTAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
* * **
101187801 GACTCGCCTTAATCCCCTAAGCAATAGGGTAACAGGTTAAATTTGCGGATCTTATCT
66 GACTCACCTTAATCCACTAAGCAATAGGGTAACAGGTTAAATTTGCAAATCTTATCT
*
101187858 CCTTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 CCTTAAGTAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
*
101187923 TCGAAGACTCACCTTAATCCACTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCT
61 TCGAAGACTCACCTTAATCCACTAAGCAATAGGGTAACAGGTTAAATTTGCAAATCTTATCT
*
101187985 CCTTAAGCAGTAG
1 CCTTAAGTAGTAG
101187998 TGAAGCAGAT
Statistics
Matches: 128, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
122 22 0.17
127 106 0.83
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (122 bp):
CCTTAAGTAGTAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
GACTCACCTTAATCCACTAAGCAATAGGGTAACAGGTTAAATTTGCAAATCTTATCT
Found at i:101187966 original size:84 final size:84
Alignment explanation
Indices: 101187861--101188376 Score: 713
Period size: 84 Copynumber: 6.2 Consensus size: 84
101187851 CTTATCTCCT
*
101187861 TAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
1 TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
* *
101187926 AAGACTCACCTTAATCCAC
66 AAGACTCGCCTTAATCCCC
* * *
101187945 TAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCTTAAGCAGTAGTGAAGCAGATCG
1 TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
101188010 AAGACTCGCCTTAATCCCC
66 AAGACTCGCCTTAATCCCC
* * *
101188029 TAAACGGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
1 TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
*
101188094 AAGACTCGCCTTAATCCTC
66 AAGACTCGCCTTAATCCCC
* * * *
101188113 TAAGCAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCTTAAGCAGTAGCGGAGCAAATCG
1 TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
101188173 ACGACGACTCGCCTTAATCCCC
66 A--A-GACTCGCCTTAATCCCC
*
101188195 TAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
1 TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
* *
101188260 AAGACCCGCTTTAATCCCC
66 AAGACTCGCCTTAATCCCC
* * * * *
101188279 TAAGCAGTAAGGTAACAAGTTAAATTTGCAGATCTTA--TCCCTAAGCAATAGCGGAGCAGATTG
1 TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
* *
101188342 AAGACAATGCACCTTAACCCCC
66 AAGAC--T-CGCCTTAATCCCC
101188364 TAAGCAGTAGGGT
1 TAAGCAGTAGGGT
101188377 CCAAGATGAT
Statistics
Matches: 382, Mismatches: 39, Indels: 21
0.86 0.09 0.05
Matches are distributed among these distances:
79 37 0.10
81 1 0.00
82 62 0.16
84 221 0.58
85 23 0.06
87 38 0.10
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (84 bp):
TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
AAGACTCGCCTTAATCCCC
Found at i:101188256 original size:166 final size:164
Alignment explanation
Indices: 101187861--101188295 Score: 665
Period size: 166 Copynumber: 2.6 Consensus size: 164
101187851 CTTATCTCCT
101187861 TAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
1 TAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
* *
101187926 AAGACTCACCTTAATCCACTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCTTAA
66 AAGACTCGCCTTAATCCACTAAGCAGTAGGGTAACAGG----ATTCGCAAATCTTATCTCCTTAA
* *
101187991 GCAGTAGTGAAGCAGATCGAAGACTCGCCTTAATCCCC
127 GCAGTAGCGAAGCAAATCGAAGACTCGCCTTAATCCCC
*** *
101188029 TAAACGGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
1 TAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
* *
101188094 AAGACTCGCCTTAATCCTCTAAGCAGTAGGGTAACAGG-TTCGCAGATCTTATCTCCTTAAGCAG
66 AAGACTCGCCTTAATCCACTAAGCAGTAGGGTAACAGGATTCGCAAATCTTATCTCCTTAAGCAG
*
101188158 TAGCGGAGCAAATCGACGACGACTCGCCTTAATCCCC
131 TAGCGAAGCAAATCGA--A-GACTCGCCTTAATCCCC
101188195 TAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
1 TAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
* * * *
101188260 AAGACCCGCTTTAATCCCCTAAGCAGTAAGGTAACA
66 AAGACTCGCCTTAATCCACTAAGCAGTAGGGTAACA
101188296 AGTTAAATTT
Statistics
Matches: 245, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
163 37 0.15
165 1 0.00
166 110 0.45
168 97 0.40
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (164 bp):
TAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
AAGACTCGCCTTAATCCACTAAGCAGTAGGGTAACAGGATTCGCAAATCTTATCTCCTTAAGCAG
TAGCGAAGCAAATCGAAGACTCGCCTTAATCCCC
Found at i:101190098 original size:39 final size:39
Alignment explanation
Indices: 101190055--101190331 Score: 437
Period size: 39 Copynumber: 7.1 Consensus size: 39
101190045 CATAAACAAA
* *
101190055 ATATAACACCAGCATGAATGCTTTCGGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
* **
101190094 ATATAGCACCAGCACGAATGCCTTCGGGACTTAGCCCAT
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
* *
101190133 ATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
*
101190172 ATATAGCACCAGCACGAATGCCTTCGGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
* *
101190211 ATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
* * *
101190250 ATATAATACCAGCATGAATGCCTTCAGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
101190289 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
101190328 ATAT
1 ATAT
101190332 TTTTCCAGCA
Statistics
Matches: 218, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 218 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (39 bp):
ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
Found at i:101190367 original size:39 final size:39
Alignment explanation
Indices: 101190324--101190414 Score: 112
Period size: 39 Copynumber: 2.3 Consensus size: 39
101190314 GGGACTTAGC
* * *
101190324 CCGGATATTTTTCCAGCACT-TAGCCTGCGGACTTTAAGT
1 CCGGATATTTTTCCAGCA-TAAAGCCTGCAGACTTCAAGT
* *
101190363 CCGGATATATTTCTAGCATAAAGCCTGCAGACTTCAAGT
1 CCGGATATTTTTCCAGCATAAAGCCTGCAGACTTCAAGT
101190402 CCGGATATATTTT
1 CCGGATAT-TTTT
101190415 TCCAATACCA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
38 1 0.02
39 40 0.91
40 3 0.07
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATAAAGCCTGCAGACTTCAAGT
Found at i:101190406 original size:117 final size:117
Alignment explanation
Indices: 101190055--101190410 Score: 423
Period size: 117 Copynumber: 3.0 Consensus size: 117
101190045 CATAAACAAA
* * ** * *
101190055 ATATAACACCAGCATGAATGCTTTCGGGACTTAGCCCGGATATAGCACCAGCACGAATGCCTTCG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTGCA
** * * *
101190120 GGACTTAGCCCATATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGG
66 GGACTTAGCCCGGATATAATACCAGCATGAAAGCCTGCAGGACTTAGCCCGG
* *
101190172 ATATAGCACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTCA
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTGCA
* *
101190237 GGACTTAGCCCGGATATAATACCAGCATGAATGCCTTCAGGACTTAGCCCGG
66 GGACTTAGCCCGGATATAATACCAGCATGAAAGCCTGCAGGACTTAGCCCGG
** * **
101190289 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATTTTTCCAGCACTTA-GCCTGC-
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTGCA
* * * * *
101190352 GGACTTTAAGTCCGGATATATTTCTAGCAT-AAAGCCTGCA-GACTTCAAGTCCGG
66 GGAC-TT-AGCCCGGATATAATACCAGCATGAAAGCCTGCAGGACTT--AGCCCGG
101190406 ATATA
1 ATATA
101190411 TTTTTCCAAT
Statistics
Matches: 212, Mismatches: 23, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
115 9 0.04
116 15 0.07
117 188 0.89
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (117 bp):
ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTGCA
GGACTTAGCCCGGATATAATACCAGCATGAAAGCCTGCAGGACTTAGCCCGG
Found at i:101193078 original size:42 final size:42
Alignment explanation
Indices: 101193027--101193116 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
101193017 AAGGGAGTAG
* *
101193027 CACAAGGTCCTTATAGATACTTGTAGGTGAAGAAGGGAACAA
1 CACAAGGTCCTTAGAGATACTTGCAGGTGAAGAAGGGAACAA
* * * *
101193069 CACAGGGTCCTTAGAGATACTTGCAGTTGAAGAAGGGAGCAG
1 CACAAGGTCCTTAGAGATACTTGCAGGTGAAGAAGGGAACAA
101193111 CACAAG
1 CACAAG
101193117 TTCATTTTCA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.19
Consensus pattern (42 bp):
CACAAGGTCCTTAGAGATACTTGCAGGTGAAGAAGGGAACAA
Found at i:101193789 original size:21 final size:21
Alignment explanation
Indices: 101193742--101193791 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
101193732 CTGGTATATG
101193742 GTTAGTCAAGTGGTTAGCATTT
1 GTTA-TCAAGTGGTTAGCATTT
* **
101193764 TTTATCAAGTGGTTAGTGTTT
1 GTTATCAAGTGGTTAGCATTT
101193785 GTTATCA
1 GTTATCA
101193792 CTTACTAGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.22, C:0.08, G:0.24, T:0.46
Consensus pattern (21 bp):
GTTATCAAGTGGTTAGCATTT
Found at i:101194130 original size:31 final size:31
Alignment explanation
Indices: 101194094--101194156 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
101194084 TAAATGAGAA
101194094 AGTAAAAAAATTGTTTTGATATTGATACGTT
1 AGTAAAAAAATTGTTTTGATATTGATACGTT
*
101194125 AGTAAAAAAATTGTTTTGATATTGATATGTT
1 AGTAAAAAAATTGTTTTGATATTGATACGTT
101194156 A
1 A
101194157 TTTTCTTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.40, C:0.02, G:0.16, T:0.43
Consensus pattern (31 bp):
AGTAAAAAAATTGTTTTGATATTGATACGTT
Found at i:101194571 original size:3 final size:3
Alignment explanation
Indices: 101194563--101194588 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
101194553 TGGTGTGGAA
101194563 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
101194589 GTAATCTCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:101194675 original size:21 final size:21
Alignment explanation
Indices: 101194646--101194695 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
101194636 CTGGTATATG
101194646 GTTAGTCAAGTAGTTAGTATTT
1 GTTA-TCAAGTAGTTAGTATTT
* * *
101194668 GTTATCAAGTGGTTCGTGTTT
1 GTTATCAAGTAGTTAGTATTT
101194689 GTTATCA
1 GTTATCA
101194696 CTCACTAGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.22, C:0.08, G:0.24, T:0.46
Consensus pattern (21 bp):
GTTATCAAGTAGTTAGTATTT
Found at i:101194886 original size:42 final size:42
Alignment explanation
Indices: 101194822--101194904 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
101194812 ATGAAAAGGA
* * * *
101194822 AAGAAGGGAGCAACAAATGGTCCTTCGAGGTACTTGCAGGTG
1 AAGAAGGGAACAACAAAGGGTCCTTAGAGATACTTGCAGGTG
* *
101194864 AAGAAGGGAACAACACAGGGTCCTTAGAGATACTTGGAGGT
1 AAGAAGGGAACAACAAAGGGTCCTTAGAGATACTTGCAGGT
101194905 AAAAAATGAG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.34, C:0.16, G:0.33, T:0.18
Consensus pattern (42 bp):
AAGAAGGGAACAACAAAGGGTCCTTAGAGATACTTGCAGGTG
Found at i:101195086 original size:3 final size:3
Alignment explanation
Indices: 101195078--101195105 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
101195068 ATGTATTAAG
101195078 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
101195106 GTAATCTCCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:101195608 original size:21 final size:21
Alignment explanation
Indices: 101195583--101195623 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
101195573 GGTTTGTCAA
101195583 GTGGTTAGTATTTGTTATCAT
1 GTGGTTAGTATTTGTTATCAT
*
101195604 GTGGTTAGTGTTTGTTATCA
1 GTGGTTAGTATTTGTTATCA
101195624 CTCACTAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.05, G:0.27, T:0.51
Consensus pattern (21 bp):
GTGGTTAGTATTTGTTATCAT
Found at i:101195868 original size:42 final size:41
Alignment explanation
Indices: 101195780--101195868 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 41
101195770 TAGCAAAGGG
* *
101195780 TCCTTAGAGGTACTTGCAGGTGAAGAAGGTAACCACACAGGG
1 TCCTTAGAGATACTTGCAGGTGAAGAAGG-AACCACACAGGA
*
101195822 TCCTTAGAGATACTTGCAGGTGAAGAA-GAGACCAGCACTGGA
1 TCCTTAGAGATACTTGCAGGTGAAGAAGGA-ACCA-CACAGGA
101195864 TCCTT
1 TCCTT
101195869 TTCAAGTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
40 1 0.02
41 5 0.12
42 36 0.86
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.21
Consensus pattern (41 bp):
TCCTTAGAGATACTTGCAGGTGAAGAAGGAACCACACAGGA
Found at i:101196418 original size:3 final size:3
Alignment explanation
Indices: 101196410--101196444 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
101196400 TGGTGTGGAA
101196410 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
101196445 GTAATCTCTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:101196531 original size:21 final size:21
Alignment explanation
Indices: 101196502--101196551 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
101196492 CTGGTATATG
*
101196502 GTTAGTCAAGTGGTTAGC-ATTT
1 GTTA-TCAAATGGTTA-CTATTT
*
101196524 GTTATCAAATGGTTACTGTTT
1 GTTATCAAATGGTTACTATTT
101196545 GTTATCA
1 GTTATCA
101196552 CTCACTAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 20 0.80
22 4 0.16
ACGTcount: A:0.24, C:0.10, G:0.22, T:0.44
Consensus pattern (21 bp):
GTTATCAAATGGTTACTATTT
Found at i:101196793 original size:42 final size:41
Alignment explanation
Indices: 101196688--101196793 Score: 140
Period size: 42 Copynumber: 2.5 Consensus size: 41
101196678 GCAAAAAAGA
*
101196688 AAGAAGGAAGCAACACAGGGTCCTTAGAGATACTTGCAAGTG
1 AAGAAGG-AGCAACACAGGGTCCTTAGACATACTTGCAAGTG
* *
101196730 AAGAAGGGAGCAACAAAGGGTCCTTAGACATACTTGCAGGTG
1 AAGAA-GGAGCAACACAGGGTCCTTAGACATACTTGCAAGTG
* *
101196772 AAGATAGGAGCAGCACGGGGTC
1 AAGA-AGGAGCAACACAGGGTC
101196794 TTTTCAAGTA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
42 53 0.95
43 3 0.05
ACGTcount: A:0.36, C:0.17, G:0.32, T:0.15
Consensus pattern (41 bp):
AAGAAGGAGCAACACAGGGTCCTTAGACATACTTGCAAGTG
Found at i:101197346 original size:933 final size:921
Alignment explanation
Indices: 101192927--101197409 Score: 5566
Period size: 928 Copynumber: 4.9 Consensus size: 921
101192917 GTTACACTAG
* * *
101192927 TGATACTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATCACTTT-TTTAGTAT
1 TGATACTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATC-GTTTCTTCAATAT
* * * * *
101192991 AGTTCTAACAAGGACGAAAAGGAAAGAAGGGAGTAGCACAAGGTCCTTATAGATACTTGTAGGTG
65 ACTTCTAACAAGGACGAAAAGGAAAGAAGGGAGCAACACAAGGTCCTTAGAGATACTTGCAGGTG
* ** *
101193056 AAGAAGGGAACAACACAGGGTCCTTAGAGATACTTGCAGTTGAAGAAGGGAGCAGCACAAGTTCA
130 AAGAAGGGAACAACACAGGGTCCTTAGAGATACTTGCAGGTGAAGAA-GGAGCAGCACGGGGTC-
* *
101193121 TTTTCAAGGAAATATTTCATGC------GATTTCAAGTAAAGACTTTTAAATCAAATTGATAGAA
193 TTTTCAAGTAAATATTTCATGCATATGAGATTTCAAGTAAAGACTTTTAAATCAAATTGATGGAA
* * * * **
101193180 ATAATAATTTAAAAGATATTAATAAATGGGAAAGTAAAAAAAAATATTTTG---ATGATTTGTTA
258 TTAATAATTTAAAAGATATTAATAAATGAGAAAGT-AAAAAAATTGTTTTGATAATGATACGTTA
* * ** *
101193242 TTTTATTATTATGTGAAATGTATTGAGTTATTATTATTATTATTATTATTAAATTTCTATTGTTT
322 TTTTATTATTATGTGAAATGTATTAAG---TTATTATTATTATTA-T-TT-AATCTCCGTTGATT
* * *
101193307 CCTTTTCACTGCAATCAAAATCGGTGGAATCTTACGATATTAGACATCACCAGCAATCTGTGATC
381 CCTTTGCACTGCAATCAAAATCGGTGGAATCCTACGATATTAGACATCTCCAGCAATCTGTGATC
*
101193372 CCATGACGTACTGTTCATCTTCTTCCTCCCCTTACAAACAAAAAAAGGCCAAACACACAATTATC
446 CCATGCCGTACTGTTCATCTTCTTCCTCCCCTTACAAAC-AAAAAAGGCCAAACACACAATTATC
101193437 ACTAGGATTCAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGGAGCATTAAGGAC
510 ACTAGGATTCAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGGAGCATTAAGGAC
* * * *
101193502 AAAAAGGAAGAAGGTACATAGCATAAGTGAAGAAAGGTGATGAAGGGAGCAGTAATTGTCTGCTC
575 AAAAAGGAAGAAGGTACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTC
*
101193567 AACAGTGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCA
640 AACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCA
*
101193632 TTGTCCTCTGTGGAAATTATTTTTGGTGTGG-----A--A--ATTATTATTATTATTATTATGTA
705 TAGTCCTCTGT-GAAATTATTTTTGGTGTGGAAATTATTATTATTATTATTATTATTATTATGTA
* * * *
101193688 ATCTCCGTGGATTCCTTTGCACTGCAATCACAATAAGTTACAATCTGGTATATGGTTAGTCAAGT
769 ATCTCCGTTGATTCCTTTGCACTGCAATCACAGTCAGTTATAATCTGGTATATGGTTAGTCAAGT
* * * *
101193753 GGTTAGCATTTTTTATCAAGTGGTTAGTGTTTGTTATCACTTACTAGTGTATATAAGTATCATTT
834 GGTTAGCATTTGTTATCAAGTGGTTACTGTTTGTTATCACTCACTAGTGTATATAACTATCATTT
* *
101193818 TTGTACAGGCTCACTAAAGCTAA
899 CTGTACAGGCTCACCAAAGCTAA
* * *
101193841 TGATATTAAGAATATTCAGTAAATACTATTCTCTGTATTTCGTTCATTATCATTTCTTCAATATA
1 TGATACTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATCGTTTCTTCAATATA
** ** * *
101193906 CTTCTAACAAGGGTGAAAAACAAAGAAGGGAGCAATACAAGGTCCTTAGAGATACATGCAGGTGA
66 CTTCTAACAAGGACGAAAAGGAAAGAAGGGAGCAACACAAGGTCCTTAGAGATACTTGCAGGTGA
* * * * * *** *
101193971 AGAAGGGAGCAGCAC-GGGATCCTTCTAAAGTAAATA-TTTCA--TG-TG-A-TTTCA-TAC---
131 AGAAGGGAACAACACAGGG-TCC-T-T--AG-AGATACTTGCAGGTGAAGAAGGAGCAGCACGGG
* * * * * * *
101194025 G--ATTCCAAGTAAAGAATTTAAAAT-CAAATTGATGGAATTAAT-AATTTAAAAGA-TATT-AA
190 GTCTTTTCAAGTAAA-TATTT--CATGCATA-TGA--G-ATT--TCAA-GT-AAAGACTTTTAAA
* * * * * * **
101194084 T-AAA-TGA-GAAAGTAA-AA---AAATTG-TTTTGAT-ATTGATACGTTAGTAAAAAAATTGTT
244 TCAAATTGATGGAATTAATAATTTAAA-AGATATTAATAAATG--A-GAAAGTAAAAAAATTGTT
* * * * *
101194140 TTGATATTGATATGTTATTTTCTTATTATGTGAAAAGTATTAAGTTATTATTATTATTATGTAAT
305 TTGATAATGATACGTTATTTTATTATTATGTGAAATGTATTAAGTTATTATTATTATTATTTAAT
* *
101194205 CTCCGTTGATTCCTTTGCACTGCAATCAAAATCGGTGGAATCATACGATATTAGACAAT-TCTAG
370 CTCCGTTGATTCCTTTGCACTGCAATCAAAATCGGTGGAATCCTACGATATTAGAC-ATCTCCAG
*
101194269 CAATCTGTGATCCCATGACGTACTGTTCATCTTCTTCC-CCCACTTACAAACAAAAAAGGCCAAA
434 CAATCTGTGATCCCATGCCGTACTGTTCATCTTCTTCCTCCC-CTTACAAACAAAAAAGGCC-AA
*
101194333 ACACATAATTATCACTAGGATTCAAAATCTCTAATATCTG--AT---AT----AA-AATGAAAAG
497 ACACACAATTATCACTAGGATTCAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGAAAAG
* *
101194388 GAGCATTAA-GAAAAAAAAGAAGAAGGTACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAG
562 GAGCATTAAGGACAAAAAGGAAGAAGGTACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAG
* * * *
101194452 CAATTGTCTGTTTAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGAAAATATTTCATGTGATTT
627 CAATTGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTT
*
101194517 CCAAACTGTATCATAGTCCTCTGTGAAAATTATTTTTGGTGTGG-AA--ATTATTATTATTATTA
692 CCAAATTGTATCATAGTCCTCTGTG-AAATTATTTTTGGTGTGGAAATTATTATTATTATTATTA
* * *
101194579 TTATTATTATGTAATCTCCGTTAATTCCTTTACACTGCAATCACAGTCAGTTAGAATCTGGTATA
756 TTATTATTATGTAATCTCCGTTGATTCCTTTGCACTGCAATCACAGTCAGTTATAATCTGGTATA
* *
101194644 TGGTTAGTCAAGTAGTTAGTATTTGTTATCAAGTGGTT-CGTGTTTGTTATCACTCACTA--G--
821 TGGTTAGTCAAGTGGTTAGCATTTGTTATCAAGTGGTTAC-TGTTTGTTATCACTCACTAGTGTA
*
101194704 TAT--C-AT--TTT-TGTACAGGCTCACCGAAGCTAA
885 TATAACTATCATTTCTGTACAGGCTCACCAAAGCTAA
* *
101194735 TGATACTAAGAATATTCAGCAAATATTATTCTCTGTATTTCGTTCATTATCGTTTCTTCATTATA
1 TGATACTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATCGTTTCTTCAATATA
* * * *
101194800 TTTCTAACAAGGATGAAAAGGAAAGAAGGGAGCAACA-AATGGTCCTTCGAGGTACTTGCAGGTG
66 CTTCTAACAAGGACGAAAAGGAAAGAAGGGAGCAACACAA-GGTCCTTAGAGATACTTGCAGGTG
* * * * *
101194864 AAGAAGGGAACAACACAGGGTCCTTAGAGATACTTGGAGGTAAAAAATGAGAAGCACGGGGTCCT
130 AAGAAGGGAACAACACAGGGTCCTTAGAGATACTTGCAGGTGAAGAAGGAGCAGCACGGGGT-CT
*
101194929 TTTCAAGTAAATATTTCATGC----GA-A-TTCAAGTAAAGAATTTTAAATCAAATTGATGGAAT
194 TTTCAAGTAAATATTTCATGCATATGAGATTTCAAGTAAAGACTTTTAAATCAAATTGATGGAAT
* * *
101194988 TAATAATTTAAAAGATATTCATAAATGGGAAAGTAAAAAAATTGTTTTGATAATGATACGCTATT
259 TAATAATTTAAAAGATATTAATAAATGAGAAAGTAAAAAAATTGTTTTGATAATGATACGTTATT
*
101195053 TTATTATTATATGAAATGTATTAAGTTATTATTATTATTATTATTATTATTATGTAATCTCCGTT
324 TTATTATTATGTGAAATGTATTAAG---------TTATTATTATTATTA-T-T-TAATCTCCGTT
* *
101195118 GATTCCTTTGCACTGCAATCAAAGTCGGTGGAATCCTATGATATTAGACATCTCCAGCAATCTGT
377 GATTCCTTTGCACTGCAATCAAAATCGGTGGAATCCTACGATATTAGACATCTCCAGCAATCTGT
* * *
101195183 GATCCCATGCCGTCCTGTTCATCTTCATCCTCCCCTTACAAACAAAAAAGGCCAAGCACACAATT
442 GATCCCATGCCGTACTGTTCATCTTCTTCCTCCCCTTACAAACAAAAAAGGCCAAACACACAATT
* * * *
101195248 ATCATTAGGATTCAAAATCTCTGATATCTGATATAAAATGAAAAAGAATGCAAATGAGCATTAAG
507 ATCACTAGGATTCAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGGAGCATTAAG
* * * * ** *
101195313 GGCAAAAAAGAAGAAGGTACGTAGCATAAGTGAAGAAAAGTGAAGAAAAGAGCAGTAATTGTCTG
572 GACAAAAAGGAAGAAGGTACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTG
* ***
101195378 CTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGGGATTTTTGAATTGTA
637 CTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTA
*
101195443 TCATAGTCCACTGTGAAAATTATTTTTGGTGTGGAAATTATTATTATTATTATTATTGTTGTTGT
702 TCATAGTCCTCTGTG-AAATTATTTTTGGTGTGGAAATTATTATTATTATTATTA---------T
* * * * *
101195508 TGTTATTATGTAATCTCCATTGATTCATTTGCATTGCAATCACAGTCAGTTATAATCTGATATAT
757 TATTATTATGTAATCTCCGTTGATTCCTTTGCACTGCAATCACAGTCAGTTATAATCTGGTATAT
* * * *
101195573 GGTTTGTCAAGTGGTTAGTATTTGTTATCATGTGGTTAGTGTTTGTTATCACTCACTAGTGTATA
822 GGTTAGTCAAGTGGTTAGCATTTGTTATCAAGTGGTTACTGTTTGTTATCACTCACTAGTGTATA
* *
101195638 TAAGTATCATTTCTCTACAGGCTCACCAAAGCTAA
887 TAACTATCATTTCTGTACAGGCTCACCAAAGCTAA
* * *
101195673 TTG-TACTAAGAATATTCAGCAAATACTATTCTCTGTATTTCATTTATTATCGTTTCTTCATTAT
1 -TGATACTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATCGTTTCTTCAATAT
* * * * *
101195737 AGTTCTAACAAGGACCAAAAGGAAAGAAGGGAGTAGCA-AAGGGTCCTTAGAGGTACTTGCAGGT
65 ACTTCTAACAAGGACGAAAAGGAAAGAAGGGAGCAACACAA-GGTCCTTAGAGATACTTGCAGGT
* * * * *
101195801 GAAGAAGGTAACCACACAGGGTCCTTAGAGATACTTGCAGGTGAAGAAGAGACCAGCACTGGATC
129 GAAGAAGGGAACAACACAGGGTCCTTAGAGATACTTGCAGGTGAAGAAG-GAGCAGCACGGGGT-
* *
101195866 CTTTTCAAGTAAATATTTCATGCGATTCCATGCGATTTCAAATAAAGACTTTTAAATCAAATTGA
192 CTTTTCAAGTAAATATTTCATGC-A-T--ATGAGATTTCAAGTAAAGACTTTTAAATCAAATTGA
*
101195931 TAGAATTAATAATTTAAAAGATATTAATAAATGAGAAAGTAAAAAAATTGTTTTGATAATGATAC
253 TGGAATTAATAATTTAAAAGATATTAATAAATGAGAAAGTAAAAAAATTGTTTTGATAATGATAC
* *
101195996 GTTATTTTATTATTATGTGAAATGTATTAAG------TTATTATTATGTAATCTCTGTTGATTCC
318 GTTATTTTATTATTATGTGAAATGTATTAAGTTATTATTATTATTATTTAATCTCCGTTGATTCC
* * * * *
101196055 TTTGCACTGCAATCAAAGTCTGTGGAATCCAATGATATTAGACACCTCCAGCAATCTGTGATCCC
383 TTTGCACTGCAATCAAAATCGGTGGAATCCTACGATATTAGACATCTCCAGCAATCTGTGATCCC
* * *
101196120 ATGCCGTACTGTTCATCTTCTTCCTCTCTTTACAAACAAAAAAGGCCAAACACAGAATTATCACT
448 ATGCCGTACTGTTCATCTTCTTCCTCCCCTTACAAACAAAAAAGGCCAAACACACAATTATCACT
*
101196185 AGGGTTCAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGGAGCATTAAGGAC-AA
513 AGGATTCAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAA
* *
101196249 AAGGTAAGAAGGTACGTAGCATAGGTGAAGAAATGTGATGAAGGGAGCAGCAATTGTCTGCTCAA
578 AAGG-AAGAAGGTACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAA
* * * * *
101196314 TAAGGTCCTTAGAAATATTTGCCTTTTCAAGTAAATATTTCATTCGATTTCCAAATTGTATCATA
642 CAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATA
* *
101196379 ATCCTCCGTGAAATCTATTTTTGGTGTGGAAATTATTATTATTATTATTATTATTATTATTATTA
707 GTCCTCTGTGAAAT-TATTTTTGGTGTGG--A--A--ATTATTATTATTATTATTATTATTATTA
* *
101196444 TGTAATCTCTGTTGATTCATTTGCACTGCAATCACAGTCAGTTATAATCTGGTATATGGTTAGTC
765 TGTAATCTCCGTTGATTCCTTTGCACTGCAATCACAGTCAGTTATAATCTGGTATATGGTTAGTC
*
101196509 AAGTGGTTAGCATTTGTTATCAAATGGTTACTGTTTGTTATCACTCACTAGTGTATATAACTATC
830 AAGTGGTTAGCATTTGTTATCAAGTGGTTACTGTTTGTTATCACTCACTAGTGTATATAACTATC
*
101196574 ATTTCTGTACAGGTTCACCAAAGCTAA
895 ATTTCTGTACAGGCTCACCAAAGCTAA
* * *
101196601 TGATATTAAGAATATTTAGTAAATACTATTCTCTGTATTTCGTTCATTATCGTTTCTTCAATATA
1 TGATACTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATCGTTTCTTCAATATA
* * * * * *
101196666 CTTCTAACAAGGGCAAAAAAGAAAGAAGGAAGCAACACAGGGTCCTTAGAGATACTTGCAAGTGA
66 CTTCTAACAAGGACGAAAAGGAAAGAAGGGAGCAACACAAGGTCCTTAGAGATACTTGCAGGTGA
* * *
101196731 AGAAGGGAGCAACAAAGGGTCCTTAGACATACTTGCAGGTGAAGATAGGAGCAGCACGGGGTCTT
131 AGAAGGGAACAACACAGGGTCCTTAGAGATACTTGCAGGTGAAGA-AGGAGCAGCACGGGGTCTT
101196796 TTCAAGTAAATATTTCATGCAATTTAATGAGATTTCAAGTAAAGACTTTTAAATCAAATTGATGG
195 TTCAAGTAAATATTTCATGC-A--T-ATGAGATTTCAAGTAAAGACTTTTAAATCAAATTGATGG
* ** * *
101196861 AATTAATAATTTAAAAGATATTAATAAACGAGAAAGTAAAAAAATTGTTTCCATAGTGATACGCT
256 AATTAATAATTTAAAAGATATTAATAAATGAGAAAGTAAAAAAATTGTTTTGATAATGATACGTT
*
101196926 ATTTTATTATTATGTGAAATGTATTAAGTTATTATTATTCTTATTTAATCTCCGTTGATTCCTTT
321 ATTTTATTATTATGTGAAATGTATTAAGTTATTATTATTATTATTTAATCTCCGTTGATTCCTTT
* ** * *
101196991 GCACTGCAATCAAATTCGGTTTAATCCTACGATATTAGACATCTCTAGTAATCTGTGATCCCATG
386 GCACTGCAATCAAAATCGGTGGAATCCTACGATATTAGACATCTCCAGCAATCTGTGATCCCATG
*
101197056 CCGTACTGTTCATCTTCTTCCTCCCCTTACAAACAAAAAAGGCCAAACACACAATTACCACTAGG
451 CCGTACTGTTCATCTTCTTCCTCCCCTTACAAACAAAAAAGGCCAAACACACAATTATCACTAGG
* *
101197121 ATTCAAAATCTCTAATATCTGATTTAAAATGAAAAAGAATGAAAAGGATCATTAAGGACAAAAAG
516 ATTCAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAAG
* * * * * *
101197186 GAAAAAGGTACGTAACGTAGGTGAAGAAAGGTGAAGAAGGGAGCAACAATTTTCTGCTCAATAGG
581 GAAGAAGGTACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACAGG
*
101197251 GTCCATAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGTCC
646 GTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGTCC
*
101197316 ACTGTCGAAATTATTTTTGGTGTGGAAATTATTATTATTA-T-TT-TTATTATTATGTAATCTCC
711 TCTGT-GAAATTATTTTTGGTGTGGAAATTATTATTATTATTATTATTATTATTATGTAATCTCC
*
101197378 GTTGATTCCTTTACACTGCAATCACAGTCAGT
775 GTTGATTCCTTTGCACTGCAATCACAGTCAGT
101197410 GTAGCACCCC
Statistics
Matches: 3092, Mismatches: 327, Indels: 290
0.83 0.09 0.08
Matches are distributed among these distances:
887 5 0.00
888 5 0.00
889 9 0.00
890 9 0.00
891 4 0.00
892 8 0.00
893 5 0.00
894 205 0.07
895 10 0.00
896 10 0.00
897 6 0.00
898 149 0.05
899 21 0.01
900 7 0.00
901 4 0.00
902 12 0.00
903 15 0.00
904 125 0.04
905 49 0.02
906 119 0.04
907 8 0.00
908 15 0.00
909 144 0.05
910 8 0.00
911 11 0.00
912 31 0.01
913 10 0.00
914 131 0.04
915 56 0.02
916 155 0.05
917 8 0.00
918 11 0.00
919 25 0.01
920 5 0.00
924 48 0.02
925 2 0.00
926 1 0.00
927 163 0.05
928 426 0.14
929 4 0.00
930 10 0.00
931 325 0.11
932 3 0.00
933 336 0.11
934 20 0.01
935 3 0.00
937 22 0.01
938 178 0.06
939 36 0.01
947 1 0.00
948 1 0.00
949 118 0.04
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (921 bp):
TGATACTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATCGTTTCTTCAATATA
CTTCTAACAAGGACGAAAAGGAAAGAAGGGAGCAACACAAGGTCCTTAGAGATACTTGCAGGTGA
AGAAGGGAACAACACAGGGTCCTTAGAGATACTTGCAGGTGAAGAAGGAGCAGCACGGGGTCTTT
TCAAGTAAATATTTCATGCATATGAGATTTCAAGTAAAGACTTTTAAATCAAATTGATGGAATTA
ATAATTTAAAAGATATTAATAAATGAGAAAGTAAAAAAATTGTTTTGATAATGATACGTTATTTT
ATTATTATGTGAAATGTATTAAGTTATTATTATTATTATTTAATCTCCGTTGATTCCTTTGCACT
GCAATCAAAATCGGTGGAATCCTACGATATTAGACATCTCCAGCAATCTGTGATCCCATGCCGTA
CTGTTCATCTTCTTCCTCCCCTTACAAACAAAAAAGGCCAAACACACAATTATCACTAGGATTCA
AAATCTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAAGGAAGA
AGGTACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACAGGGTCCT
TAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGTCCTCTGT
GAAATTATTTTTGGTGTGGAAATTATTATTATTATTATTATTATTATTATGTAATCTCCGTTGAT
TCCTTTGCACTGCAATCACAGTCAGTTATAATCTGGTATATGGTTAGTCAAGTGGTTAGCATTTG
TTATCAAGTGGTTACTGTTTGTTATCACTCACTAGTGTATATAACTATCATTTCTGTACAGGCTC
ACCAAAGCTAA
Found at i:101198185 original size:32 final size:34
Alignment explanation
Indices: 101198149--101198213 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
101198139 TAGCAGTGGT
*
101198149 ACTGGGCCAGAG-CCCTT-TTCAGATTACAATAA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
**
101198181 ACTGGGCCTTAGCCCCTTATTCAGATAACAATA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATA
101198214 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 10 0.36
33 5 0.18
34 13 0.46
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (34 bp):
ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
Found at i:101198963 original size:46 final size:46
Alignment explanation
Indices: 101198910--101199001 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
101198900 AAAGAGGGTG
101198910 TTAGTTACACACCTGTTTGCGACGATATGCTGACGAGATCCACACA
1 TTAGTTACACACCTGTTTGCGACGATATGCTGACGAGATCCACACA
101198956 TTAGTTACACACCTGTTTGCGACGATATGCTGACGAGATCCACACA
1 TTAGTTACACACCTGTTTGCGACGATATGCTGACGAGATCCACACA
101199002 CGAACTGCCT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (46 bp):
TTAGTTACACACCTGTTTGCGACGATATGCTGACGAGATCCACACA
Found at i:101200146 original size:26 final size:26
Alignment explanation
Indices: 101200110--101200193 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
101200100 CATGAAATTC
101200110 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
101200136 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
101200162 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
101200188 TTATCA
1 TTATCA
101200194 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:101200821 original size:42 final size:42
Alignment explanation
Indices: 101200730--101200822 Score: 98
Period size: 42 Copynumber: 2.2 Consensus size: 42
101200720 GGAGCATCAA
* * *
101200730 AGGGTCCTTAGAGGTACTTGCAGGTGAAGAAGGGAACAGAAC
1 AGGGTCCTTAGAGATACTTGCAGGTGAAAAAGAGAACAGAAC
* * * *
101200772 AGAGTCCTTAGAGATA-TTTCGAGGTGAAAAAGAGAGCAGCAC
1 AGGGTCCTTAGAGATACTTGC-AGGTGAAAAAGAGAACAGAAC
*
101200814 GGGGTCCTT
1 AGGGTCCTT
101200823 TTCAGGTAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
41 3 0.07
42 38 0.93
ACGTcount: A:0.32, C:0.15, G:0.33, T:0.19
Consensus pattern (42 bp):
AGGGTCCTTAGAGATACTTGCAGGTGAAAAAGAGAACAGAAC
Found at i:101200849 original size:10 final size:10
Alignment explanation
Indices: 101200834--101200859 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
101200824 TCAGGTAAAT
101200834 ATTTCATGCG
1 ATTTCATGCG
101200844 ATTTCATGCG
1 ATTTCATGCG
101200854 ATTTCA
1 ATTTCA
101200860 AGTAAAGACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.19, G:0.15, T:0.42
Consensus pattern (10 bp):
ATTTCATGCG
Found at i:101201701 original size:42 final size:42
Alignment explanation
Indices: 101201655--101201750 Score: 138
Period size: 42 Copynumber: 2.3 Consensus size: 42
101201645 AAGGGAGCAA
* * *
101201655 CACAGGGTCCTTAGAGATGCTTTCAGGTGAATAAGGGAATAG
1 CACAGGGTCCTTAGAGATACTTGCAGGTGAAGAAGGGAATAG
* *
101201697 CACAGTGTCCTTAGAGATACTTGCAGGTGAAGAAGGGAGTAG
1 CACAGGGTCCTTAGAGATACTTGCAGGTGAAGAAGGGAATAG
*
101201739 CGCAGGGTCCTT
1 CACAGGGTCCTT
101201751 TTGAAGTAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.23
Consensus pattern (42 bp):
CACAGGGTCCTTAGAGATACTTGCAGGTGAAGAAGGGAATAG
Found at i:101202401 original size:21 final size:21
Alignment explanation
Indices: 101202372--101202421 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
101202362 CTGGTATATG
101202372 GTTAGTCAAGCGGTTAGCATTT
1 GTTA-TCAAGCGGTTAGCATTT
* **
101202394 GTTATCAAGTGGTTAGTGTTT
1 GTTATCAAGCGGTTAGCATTT
101202415 GTTATCA
1 GTTATCA
101202422 CTCACCAGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.22, C:0.10, G:0.26, T:0.42
Consensus pattern (21 bp):
GTTATCAAGCGGTTAGCATTT
Found at i:101202632 original size:43 final size:43
Alignment explanation
Indices: 101202554--101202756 Score: 275
Period size: 43 Copynumber: 4.7 Consensus size: 43
101202544 TTTTAGGACC
* * *
101202554 TTTAGCGGCGCTCTTAT-AAAAACGCCGCTAAAGACCTGTACT
1 TTTAGCGGCGCTTTTTTAAAAAACGCCGCTATAGACCTGTACT
*
101202596 TTTAGCGGCGCTTTTTTAAAAAACGCCACTATAGACCTGTACT
1 TTTAGCGGCGCTTTTTTAAAAAACGCCGCTATAGACCTGTACT
* * * * * *
101202639 TTTAGCTGTGCTTTTATAAAAAAACGCCGCTA-ATGACCAGGACC
1 TTTAGCGGCGCTTTT-TTAAAAAACGCCGCTATA-GACCTGTACT
*
101202683 TTTAGCGGCGCTTTTTTAAAAAATGCCGCTATAGACCTGTACT
1 TTTAGCGGCGCTTTTTTAAAAAACGCCGCTATAGACCTGTACT
101202726 TTTAGCGGCGCTTTTTTAAAAAACGCCGCTA
1 TTTAGCGGCGCTTTTTTAAAAAACGCCGCTA
101202757 ATTTCCCTAG
Statistics
Matches: 138, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
42 15 0.11
43 88 0.64
44 35 0.25
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (43 bp):
TTTAGCGGCGCTTTTTTAAAAAACGCCGCTATAGACCTGTACT
Found at i:101202687 original size:87 final size:86
Alignment explanation
Indices: 101202554--101202758 Score: 295
Period size: 87 Copynumber: 2.4 Consensus size: 86
101202544 TTTTAGGACC
* * * * * *
101202554 TTTAGCGGCGC-TCTTATAAAAACGCCGCTAAAGACCTGTACTTTTAGCGGCGCTTTTTTAAAAA
1 TTTAGCGGCGCTTTTTAAAAAAACGCCGCTAATGACCAGGACCTTTAGCGGCGCTTTTTTAAAAA
101202618 ACGCCACTATAGACCTGTACT
66 ACGCCACTATAGACCTGTACT
* *
101202639 TTTAGCTGTGCTTTTATAAAAAAACGCCGCTAATGACCAGGACCTTTAGCGGCGCTTTTTTAAAA
1 TTTAGCGGCGCTTTT-TAAAAAAACGCCGCTAATGACCAGGACCTTTAGCGGCGCTTTTTTAAAA
* *
101202704 AATGCCGCTATAGACCTGTACT
65 AACGCCACTATAGACCTGTACT
*
101202726 TTTAGCGGCGCTTTTTTAAAAAACGCCGCTAAT
1 TTTAGCGGCGCTTTTTAAAAAAACGCCGCTAAT
101202759 TTCCCTAGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
85 9 0.09
86 19 0.18
87 77 0.73
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (86 bp):
TTTAGCGGCGCTTTTTAAAAAAACGCCGCTAATGACCAGGACCTTTAGCGGCGCTTTTTTAAAAA
ACGCCACTATAGACCTGTACT
Found at i:101208642 original size:41 final size:41
Alignment explanation
Indices: 101208596--101208897 Score: 403
Period size: 41 Copynumber: 7.4 Consensus size: 41
101208586 GGTTATGGGA
**
101208596 TTTTTAGCGGCGTTTTAGAAAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
*
101208637 TTTTTAGCGGCGTTTTAGCAAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* *
101208678 TTTTTAGCGGCGTTTTACCAAAACCGCCGCTAATGCTTTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
*
101208719 TTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* * * *
101208760 TTTTTGGCGGCGTTTTATCGAAAGTGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* *
101208801 TTTTTAGCGGCGTTTTACCGAAAGTGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* * **
101208842 -TTTTAGCGGCATTTTTGACTAAAA-CGCCGCTGTTGCTCT-G
1 TTTTTAGCGGC-GTTTT-ACCAAAAGCGCCGCTAATGCTCTGG
* *
101208882 TTTTTACCGGTGTTTT
1 TTTTTAGCGGCGTTTT
101208898 TTTTAGAACG
Statistics
Matches: 236, Mismatches: 22, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
40 15 0.06
41 216 0.92
42 5 0.02
ACGTcount: A:0.18, C:0.22, G:0.25, T:0.36
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
Found at i:101209221 original size:42 final size:42
Alignment explanation
Indices: 101209113--101209201 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
101209103 GCGAAAAAGA
* * * *
101209113 AAGAAGGGAGCAACACATGGTCCTTAGAGATACTTGCCGGTG
1 AAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTACAGGTG
101209155 AAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTACAGGTG
1 AAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTACAGGTG
101209197 AAGAA
1 AAGAA
101209202 CGGGGCAGCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.37, C:0.16, G:0.30, T:0.17
Consensus pattern (42 bp):
AAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTACAGGTG
Found at i:101210419 original size:26 final size:26
Alignment explanation
Indices: 101210381--101210462 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
101210371 TGATATAAAT
*
101210381 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101210407 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101210433 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101210459 TGAT
1 TGAT
101210463 GGGAATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:101211752 original size:14 final size:14
Alignment explanation
Indices: 101211733--101211767 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
101211723 TTTTGGTAAG
101211733 CTGCAAAATTTGGA
1 CTGCAAAATTTGGA
101211747 CTGCAAAATTTGGA
1 CTGCAAAATTTGGA
101211761 CTGCAAA
1 CTGCAAA
101211768 GTGCATGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (14 bp):
CTGCAAAATTTGGA
Found at i:101214093 original size:17 final size:17
Alignment explanation
Indices: 101214038--101214093 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
101214028 TAAATTTAAA
101214038 ATATAATATATAATAAAA-
1 ATATAAT-TAT-ATAAAAT
101214056 ATAT-ATT-TATAAGAAT
1 ATATAATTATATAA-AAT
101214072 A-ATAATTATATAAAAT
1 ATATAATTATATAAAAT
101214088 ATATAA
1 ATATAA
101214094 AATATATTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
14 4 0.12
15 5 0.15
16 9 0.27
17 11 0.33
18 4 0.12
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (17 bp):
ATATAATTATATAAAAT
Found at i:101214613 original size:18 final size:18
Alignment explanation
Indices: 101214577--101214685 Score: 139
Period size: 18 Copynumber: 5.9 Consensus size: 18
101214567 AATCATATCT
*
101214577 TCTAAGATTGTATATCATA
1 TCTAAGATTG-AAATCATA
101214596 TCTAAGATTGAAATCATA
1 TCTAAGATTGAAATCATA
*
101214614 TCTAAGATTGCAATCATA
1 TCTAAGATTGAAATCATA
*
101214632 TCTAAGATTG-TATCATA
1 TCTAAGATTGAAATCATA
* *
101214649 TCTAAGATTGCATATCACA
1 TCTAAGATTG-AAATCATA
101214668 TCTAAGATTGAATATCAT
1 TCTAAGATTGAA-ATCAT
101214686 TGAAGATTAT
Statistics
Matches: 81, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
17 16 0.20
18 35 0.43
19 30 0.37
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGAAATCATA
Found at i:101214693 original size:36 final size:38
Alignment explanation
Indices: 101214577--101214685 Score: 172
Period size: 36 Copynumber: 3.0 Consensus size: 38
101214567 AATCATATCT
*
101214577 TCTAAGATTGTATATCATATCTAAGATTGAA-ATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGAATATCATA
101214614 TCTAAGATTGCA-ATCATATCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGAATATCATA
*
101214649 TCTAAGATTGCATATCACATCTAAGATTGAATATCAT
1 TCTAAGATTGCATATCATATCTAAGATTGAATATCAT
101214686 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
35 18 0.27
36 31 0.47
37 11 0.17
38 6 0.09
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.37
Consensus pattern (38 bp):
TCTAAGATTGCATATCATATCTAAGATTGAATATCATA
Found at i:101215402 original size:205 final size:205
Alignment explanation
Indices: 101215048--101215752 Score: 1214
Period size: 205 Copynumber: 3.4 Consensus size: 205
101215038 AAATTAACTT
* * * * *
101215048 CTTCGATTTGTTC-CTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCA
1 CTTCGATTTGTTCTC-TGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACA
* * *
101215112 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACTATCT
65 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCT
* * *
101215177 TGGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCCATGTATCTACTCTCCATTGAAGTG
130 TGGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTACTCTCTATTGAAGTA
101215242 GAGATGCCAGA
195 GAGATGCCAGA
* *
101215253 CTTCGATTTGTTCTCTGACACTACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAATAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
101215318 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
* *
101215383 GGATCTGCTTCAACATAAACATCTGAAGGTGAGATCTGCTATGTATCTACTCTCTATTGAATTAG
131 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTACTCTCTATTGAAGTAG
101215448 AGATGCCAGA
196 AGATGCCAGA
* *
101215458 CTTCGATTTGTTCTCTGACACTACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAATAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
101215523 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATATCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
*
101215588 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAG
131 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTACTCTCTATTGAAGTAG
101215653 AGATGCCAGA
196 AGATGCCAGA
*
101215663 CTTCGATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
101215728 GTGAAAGCCAAATCAGCTATGTCTT
66 GTGAAAGCCAAATCAGCTATGTCTT
101215753 TGATCTGCTC
Statistics
Matches: 477, Mismatches: 22, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
205 476 1.00
206 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTACTCTCTATTGAAGTAG
AGATGCCAGA
Found at i:101215805 original size:44 final size:44
Alignment explanation
Indices: 101215749--101215833 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
101215739 ATCAGCTATG
* *
101215749 TCTTTGATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGGTA
1 TCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTGGTA
* * *
101215793 TCTTCGATCTGCTCTCTGACAATACAGAGATGTCGAATCTG
1 TCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTG
101215834 CTGTTTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.31
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTGGTA
Found at i:101216875 original size:7 final size:7
Alignment explanation
Indices: 101216860--101216922 Score: 58
Period size: 7 Copynumber: 8.7 Consensus size: 7
101216850 GGCCTCTCCA
*
101216860 TTTTGCT
1 TTTTTCT
101216867 TTTTTCT
1 TTTTTCT
101216874 TTTTTCT
1 TTTTTCT
101216881 CTTTTT-T
1 -TTTTTCT
*
101216888 ATTTTT-A
1 -TTTTTCT
101216895 TTTTTCTT
1 TTTTTC-T
101216903 TTTTTCTT
1 TTTTTC-T
101216911 TTTTTCT
1 TTTTTCT
101216918 TTTTT
1 TTTTT
101216923 TTTGAAATAG
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
6 5 0.10
7 25 0.51
8 19 0.39
ACGTcount: A:0.03, C:0.11, G:0.02, T:0.84
Consensus pattern (7 bp):
TTTTTCT
Found at i:101216877 original size:8 final size:8
Alignment explanation
Indices: 101216866--101216923 Score: 71
Period size: 8 Copynumber: 6.8 Consensus size: 8
101216856 TCCATTTTGC
101216866 TTTTTTCT
1 TTTTTTCT
101216874 TTTTTCTCTT
1 TTTTT-TC-T
*
101216884 TTTTATTTT
1 TTTT-TTCT
101216893 TATTTTTCT
1 T-TTTTTCT
101216902 TTTTTTCT
1 TTTTTTCT
101216910 TTTTTTCT
1 TTTTTTCT
101216918 TTTTTT
1 TTTTTT
101216924 TTGAAATAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
8 26 0.59
9 8 0.18
10 9 0.20
11 1 0.02
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.86
Consensus pattern (8 bp):
TTTTTTCT
Found at i:101216898 original size:21 final size:20
Alignment explanation
Indices: 101216874--101216925 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
101216864 GCTTTTTTCT
101216874 TTTTTCTCTTTTTTATTTTTA
1 TTTTTCT-TTTTTTATTTTTA
*
101216895 TTTTTCTTTTTTTCTTTTT-
1 TTTTTCTTTTTTTATTTTTA
101216914 TTCTTT-TTTTTT
1 TT-TTTCTTTTTT
101216926 GAAATAGAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 8 0.28
20 14 0.48
21 7 0.24
ACGTcount: A:0.04, C:0.10, G:0.00, T:0.87
Consensus pattern (20 bp):
TTTTTCTTTTTTTATTTTTA
Found at i:101216915 original size:28 final size:27
Alignment explanation
Indices: 101216866--101216925 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 27
101216856 TCCATTTTGC
101216866 TTTTTTCTTTTTTCTCTTTTTTATTTT
1 TTTTTTCTTTTTTCTCTTTTTTATTTT
101216893 TATTTTTCTTTTTT-TCTTTTTT-TCTTT
1 T-TTTTTCTTTTTTCTCTTTTTTAT-TTT
101216920 TTTTTT
1 TTTTTT
101216926 GAAATAGAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
26 6 0.19
27 13 0.42
28 12 0.39
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (27 bp):
TTTTTTCTTTTTTCTCTTTTTTATTTT
Found at i:101223969 original size:7 final size:7
Alignment explanation
Indices: 101223925--101224059 Score: 54
Period size: 7 Copynumber: 19.4 Consensus size: 7
101223915 TGAATTTTAA
*
101223925 AATAGAT
1 AATATAT
101223932 AATATAT
1 AATATAT
101223939 GATAGTATAT
1 -A-A-TATAT
*
101223949 AA-AAAT
1 AATATAT
*
101223955 AATTTAT
1 AATATAT
101223962 AATATAT
1 AATATAT
101223969 AATATA-
1 AATATAT
* *
101223975 AAAATGT
1 AATATAT
* *
101223982 AAGTTTTT
1 AA-TATAT
101223990 AA-A-AT
1 AATATAT
*
101223995 AATGTAT
1 AATATAT
101224002 AATATA-
1 AATATAT
*
101224008 AATAAAT
1 AATATAT
101224015 AATTATAT
1 AA-TATAT
101224023 AAGATATAT
1 -A-ATATAT
101224032 AAGT-TA-
1 AA-TATAT
101224038 AA-ATAT
1 AATATAT
101224044 AATATAT
1 AATATAT
101224051 AATA-AT
1 AATATAT
101224057 AAT
1 AAT
101224060 TTACAAATTT
Statistics
Matches: 96, Mismatches: 16, Indels: 33
0.66 0.11 0.23
Matches are distributed among these distances:
5 5 0.05
6 23 0.24
7 42 0.44
8 12 0.12
9 8 0.08
10 6 0.06
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (7 bp):
AATATAT
Found at i:101224023 original size:21 final size:20
Alignment explanation
Indices: 101223991--101224102 Score: 61
Period size: 21 Copynumber: 5.6 Consensus size: 20
101223981 TAAGTTTTTA
*
101223991 AAATAATGTATAATATAAAT
1 AAATAATATATAATATAAAT
* *
101224011 AAATAATTATATAAGATATAT
1 AAATAA-TATATAATATAAAT
* *
101224032 AAGTTAAAATATAATATATAAT
1 AA-ATAATATATAATATA-AAT
* * * **
101224054 -AATAATTTACAAATTTTGA-
1 AAATAATATA-TAATATAAAT
*
101224073 AAAT-ATAAATAATAT-AAT
1 AAATAATATATAATATAAAT
101224091 AAATAATATATA
1 AAATAATATATA
101224103 TAATAAGTTA
Statistics
Matches: 65, Mismatches: 20, Indels: 15
0.65 0.20 0.15
Matches are distributed among these distances:
17 1 0.02
18 8 0.12
19 9 0.14
20 15 0.23
21 27 0.42
22 5 0.08
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.37
Consensus pattern (20 bp):
AAATAATATATAATATAAAT
Found at i:101224094 original size:12 final size:13
Alignment explanation
Indices: 101224075--101224105 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
101224065 AATTTTGAAA
101224075 ATATAAATAATAT
1 ATATAAATAATAT
101224088 A-ATAAATAATAT
1 ATATAAATAATAT
101224100 ATATAA
1 ATATAA
101224106 TAAGTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
ATATAAATAATAT
Found at i:101224103 original size:25 final size:26
Alignment explanation
Indices: 101224075--101224145 Score: 78
Period size: 25 Copynumber: 2.8 Consensus size: 26
101224065 AATTTTGAAA
101224075 ATATAAATAATATAATAA-ATAATAT
1 ATATAAATAATATAATAATATAATAT
*
101224100 ATAT-AATAAGT-TAAAAATATAATAT
1 ATATAAATAA-TATAATAATATAATAT
**
101224125 ATGCAAA-AATATAATAATATA
1 ATATAAATAATATAATAATATA
101224146 TAAAAGAGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
24 11 0.29
25 25 0.66
26 2 0.05
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (26 bp):
ATATAAATAATATAATAATATAATAT
Found at i:101224119 original size:16 final size:15
Alignment explanation
Indices: 101224078--101224142 Score: 58
Period size: 16 Copynumber: 4.0 Consensus size: 15
101224068 TTTGAAAATA
*
101224078 TAAATAATATAATAAA
1 TAAA-AATATAATAAT
*
101224094 TAATATATATAATAAGT
1 TAA-AAATATAATAA-T
101224111 TAAAAATATAATATAT
1 TAAAAATATAATA-AT
*
101224127 GCAAAAATATAATAAT
1 -TAAAAATATAATAAT
101224143 ATATAAAAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
16 24 0.59
17 17 0.41
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.34
Consensus pattern (15 bp):
TAAAAATATAATAAT
Found at i:101224235 original size:18 final size:19
Alignment explanation
Indices: 101224193--101224235 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
101224183 CATAATAAGT
*
101224193 AATAATAATATATAATGAA
1 AATAATAATATATAATCAA
* *
101224212 AGTAATACT-TATAATCAA
1 AATAATAATATATAATCAA
101224230 AATAAT
1 AATAAT
101224236 TTTATAATAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (19 bp):
AATAATAATATATAATCAA
Found at i:101225826 original size:83 final size:83
Alignment explanation
Indices: 101225607--101225876 Score: 360
Period size: 83 Copynumber: 3.2 Consensus size: 83
101225597 TTCGATTTGT
* * * * *
101225607 AAGGATGTCAAATCATCTTGAGTCTGTCTGAAAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
*
101225672 CTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* * * * *
101225690 AAGGGTGCTTAAACCATCTTCAGTCTGTTTGAGAACATTTGAGAGTTATATCTGCAATGTCCTTG
1 AAGGATGC-CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCG
101225755 ATTTGTTCCTTGTAAGCAC
65 ATTTGTTCCTTGTAAGCAC
* * *
101225774 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
**
101225839 TTTGTTCCTTGTAAATAC
66 TTTGTTCCTTGTAAGCAC
* * *
101225857 AAGAATACCAAATCATCTTG
1 AAGGATGCCAAACCATCTTG
101225877 GATCTGCTTC
Statistics
Matches: 162, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
83 89 0.55
84 73 0.45
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:101226012 original size:119 final size:118
Alignment explanation
Indices: 101225800--101226153 Score: 593
Period size: 119 Copynumber: 3.0 Consensus size: 118
101225790 CTTGAGTCTG
* *
101225800 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAATACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTT-CTTGTAAACACAAGAATAC
101225865 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGGTTAGATCTGCTATA
65 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGGTTAGATCTGCTATA
101225919 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCATTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTC-TTGTAAACACAAGAATAC
* * *
101225984 CAAATCATCTTGGATCTGCTTCAGTATAATCATCTGAAGGTTAGATCTGCTATC
65 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGGTTAGATCTGCTATA
101226038 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTG-TTCTTGTAAACACAAGAATAC
* **
101226103 CAAATCATCTTGGATCTGCTTCAACATAAATGTCTGAA-GTCTAGATCTGCT
65 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGGT-TAGATCTGCT
101226154 GTTTTCAATT
Statistics
Matches: 222, Mismatches: 10, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
118 3 0.01
119 216 0.97
120 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (118 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCTTGTAAACACAAGAATACC
AAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:101232004 original size:19 final size:19
Alignment explanation
Indices: 101231980--101232019 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
101231970 TATAACCTTG
*
101231980 AATGCATATGATATG-ATGT
1 AATGCAAATG-TATGAATGT
101231999 AATGCAAATGTATGAATGT
1 AATGCAAATGTATGAATGT
101232018 AA
1 AA
101232020 CAAAGGCATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.42, C:0.05, G:0.20, T:0.33
Consensus pattern (19 bp):
AATGCAAATGTATGAATGT
Found at i:101235656 original size:3 final size:3
Alignment explanation
Indices: 101235637--101235671 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
101235627 AAACAAATAC
*
101235637 AAT AAT ATAT AAA AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT A
101235672 TAGTAACATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:101236006 original size:7 final size:7
Alignment explanation
Indices: 101235962--101236091 Score: 53
Period size: 7 Copynumber: 18.7 Consensus size: 7
101235952 TGAATTTTAA
*
101235962 AATAGAT
1 AATATAT
101235969 AATATAT
1 AATATAT
101235976 GATAGTATAT
1 -A-A-TATAT
*
101235986 AA-AAAT
1 AATATAT
*
101235992 AATTTAT
1 AATATAT
101235999 AATATAT
1 AATATAT
101236006 AATATA-
1 AATATAT
*
101236012 AA-ATGT
1 AATATAT
* *
101236018 AAGTTTTT
1 AA-TATAT
101236026 AA-A-AT
1 AATATAT
*
101236031 AATGTAT
1 AATATAT
101236038 AATATA-
1 AATATAT
*
101236044 AATAAAT
1 AATATAT
101236051 AATTATAT
1 AA-TATAT
101236059 AAGATATAT
1 -A-ATATAT
101236068 AAGT-TA-
1 AA-TATAT
101236074 AA-ATAT
1 AATATAT
101236080 AATATAT
1 AATATAT
101236087 AATAT
1 AATAT
101236092 TTTACAAATT
Statistics
Matches: 92, Mismatches: 14, Indels: 34
0.66 0.10 0.24
Matches are distributed among these distances:
5 7 0.08
6 18 0.20
7 41 0.45
8 12 0.13
9 8 0.09
10 6 0.07
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.38
Consensus pattern (7 bp):
AATATAT
Found at i:101236079 original size:69 final size:70
Alignment explanation
Indices: 101236006--101236157 Score: 161
Period size: 69 Copynumber: 2.2 Consensus size: 70
101235996 TATAATATAT
* *
101236006 AATATAAAATGTAAGT-TTTTA-AAATAATGTATAATATAAATAA-ATA-ATTATATAAGATAT-
1 AATATAAAATATAA-TATTTTACAAATAATG-AAAATATAAATAATATATA-TA-ATAAGATATA
101236066 ATAAGTTAA
62 ATAAGTTAA
* ** *
101236075 AATATAATATATAATATTTTACAAATTTTGAAAATATAAATAATATATATAATAATATATAATAA
1 AATATAAAATATAATATTTTACAAATAATGAAAATATAAATAATATATATAATAAGATATAATAA
101236140 GTTAA
66 GTTAA
* *
101236145 AAAATATAATATA
1 AATATAAAATATA
101236158 TGCAAAAAAT
Statistics
Matches: 69, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
68 1 0.01
69 37 0.54
70 30 0.43
71 1 0.01
ACGTcount: A:0.57, C:0.01, G:0.05, T:0.38
Consensus pattern (70 bp):
AATATAAAATATAATATTTTACAAATAATGAAAATATAAATAATATATATAATAAGATATAATAA
GTTAA
Found at i:101236130 original size:12 final size:11
Alignment explanation
Indices: 101236108--101236182 Score: 50
Period size: 12 Copynumber: 6.6 Consensus size: 11
101236098 AATTTTGAAA
101236108 ATATAAATAAT
1 ATATAAATAAT
101236119 ATATATAATAAT
1 ATATA-AATAAT
101236131 ATAT-AATAAGTT
1 ATATAAATAA--T
* *
101236143 AAAAAATATAAT
1 ATATAA-ATAAT
101236155 ATATGCAAA-AA-
1 ATAT--AAATAAT
101236166 ATAT-AATAAT
1 ATATAAATAAT
101236176 ATATAAA
1 ATATAAA
101236183 AGAGATGTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 20
0.68 0.05 0.27
Matches are distributed among these distances:
8 2 0.04
9 2 0.04
10 9 0.18
11 11 0.22
12 18 0.36
13 2 0.04
14 6 0.12
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (11 bp):
ATATAAATAAT
Found at i:101236134 original size:10 final size:10
Alignment explanation
Indices: 101236114--101236241 Score: 53
Period size: 10 Copynumber: 13.5 Consensus size: 10
101236104 GAAAATATAA
101236114 ATAAT-ATAT
1 ATAATAATAT
101236123 ATAATAATAT
1 ATAATAATAT
101236133 ATAATAAGT-T
1 ATAATAA-TAT
101236143 A-AA-AA-AT
1 ATAATAATAT
101236150 ATAAT-ATAT
1 ATAATAATAT
** *
101236159 GCAA-AAAAT
1 ATAATAATAT
101236168 ATAATAATAT
1 ATAATAATAT
* *
101236178 ATAAAAGAGAT
1 ATAATA-ATAT
*
101236189 GTAA-AATA-
1 ATAATAATAT
* *
101236197 ATATTTAAGA-
1 ATA-ATAATAT
* *
101236207 AAAATAATAC
1 ATAATAATAT
101236217 ATAATAAGTA-
1 ATAATAA-TAT
101236227 ATAATAATAT
1 ATAATAATAT
101236237 ATAAT
1 ATAAT
101236242 TAAAGTAATA
Statistics
Matches: 88, Mismatches: 17, Indels: 27
0.67 0.13 0.20
Matches are distributed among these distances:
7 2 0.02
8 7 0.08
9 24 0.27
10 46 0.52
11 9 0.10
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (10 bp):
ATAATAATAT
Found at i:101236183 original size:19 final size:19
Alignment explanation
Indices: 101236105--101236183 Score: 74
Period size: 19 Copynumber: 4.1 Consensus size: 19
101236095 ACAAATTTTG
101236105 AAAATATAAATAATATATATA
1 AAAATAT-AATAATATATA-A
*
101236126 ATAATAT-ATAATA-AGTTAA
1 AAAATATAATAATATA--TAA
**
101236145 AAAATATAAT-ATATGCAA
1 AAAATATAATAATATATAA
101236163 AAAATATAATAATATATAA
1 AAAATATAATAATATATAA
101236182 AA
1 AA
101236184 GAGATGTAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
18 13 0.28
19 24 0.51
20 4 0.09
21 6 0.13
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.32
Consensus pattern (19 bp):
AAAATATAATAATATATAA
Found at i:101236268 original size:18 final size:19
Alignment explanation
Indices: 101236226--101236268 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
101236216 CATAATAAGT
*
101236226 AATAATAATATATAATTAA
1 AATAATAATATATAATCAA
* *
101236245 AGTAATACT-TATAATCAA
1 AATAATAATATATAATCAA
101236263 AATAAT
1 AATAAT
101236269 TTTATAATAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (19 bp):
AATAATAATATATAATCAA
Found at i:101242557 original size:17 final size:18
Alignment explanation
Indices: 101242504--101242664 Score: 211
Period size: 17 Copynumber: 8.9 Consensus size: 18
101242494 AATCATATAT
*
101242504 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
101242523 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
101242541 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
101242558 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
101242576 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
* * *
101242593 TCTACGATTGCAATAATA
1 TCTAAGATTGCTATCATA
101242611 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
101242628 TCTAAGATTGCATATCACA
1 TCTAAGATTGC-TATCATA
101242647 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
101242665 TGAAGATTAT
Statistics
Matches: 125, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
17 46 0.37
18 46 0.37
19 33 0.26
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:101242562 original size:35 final size:35
Alignment explanation
Indices: 101242504--101242656 Score: 252
Period size: 35 Copynumber: 4.3 Consensus size: 35
101242494 AATCATATAT
101242504 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
101242541 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
101242576 TCTAAGATTGTATCATATCTACGATTGCAATAATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
101242611 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
101242647 TCTAAGATTG
1 TCTAAGATTG
101242657 CATATCATTG
Statistics
Matches: 110, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
35 86 0.78
36 14 0.13
37 10 0.09
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:101243170 original size:42 final size:42
Alignment explanation
Indices: 101243065--101243173 Score: 137
Period size: 42 Copynumber: 2.6 Consensus size: 42
101243055 ACGAAAATGA
* * *
101243065 AAGAAGGGAGCAGCAAAAGGTCCTTAGAGGTACTTGCAGGTG
1 AAGAAGGGAGCAGCACAGGGTCCTTAGAGATACTTGCAGGTG
* * * *
101243107 AAGAAGGGAACAACACAGGGTCTTTAGAGATCCTTGCAGGTG
1 AAGAAGGGAGCAGCACAGGGTCCTTAGAGATACTTGCAGGTG
* *
101243149 AAGAAGGGAGCAGTACGGGGTCCTT
1 AAGAAGGGAGCAGCACAGGGTCCTT
101243174 TTCAAGTAAA
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.32, C:0.16, G:0.35, T:0.17
Consensus pattern (42 bp):
AAGAAGGGAGCAGCACAGGGTCCTTAGAGATACTTGCAGGTG
Found at i:101243835 original size:21 final size:21
Alignment explanation
Indices: 101243811--101243851 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
101243801 ATGGTTAGTC
101243811 AAGTGGTTAGTATTTGTTATT
1 AAGTGGTTAGTATTTGTTATT
*
101243832 AAGTGGTTAGTGTTTGTTAT
1 AAGTGGTTAGTATTTGTTAT
101243852 CACTCACTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.27, T:0.51
Consensus pattern (21 bp):
AAGTGGTTAGTATTTGTTATT
Found at i:101244054 original size:42 final size:42
Alignment explanation
Indices: 101243990--101244089 Score: 137
Period size: 42 Copynumber: 2.4 Consensus size: 42
101243980 ACAAAAAGGA
* * * *
101243990 AAGAAGGGAGCAGCATAGGGTCCTTAGAGATACTTGTAGGTG
1 AAGAAGGGAACAGCACAAGGTCCTTAGAGATACTTGCAGGTG
*
101244032 AAGAAGGGAATAGCACAAGGTCCTTAGAGATACTTGCAGGTG
1 AAGAAGGGAACAGCACAAGGTCCTTAGAGATACTTGCAGGTG
* *
101244074 AAAAAGGGAGCAGCAC
1 AAGAAGGGAACAGCAC
101244090 GGGGTTCTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.36, C:0.14, G:0.33, T:0.17
Consensus pattern (42 bp):
AAGAAGGGAACAGCACAAGGTCCTTAGAGATACTTGCAGGTG
Found at i:101246488 original size:19 final size:20
Alignment explanation
Indices: 101246464--101246504 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
101246454 TATACCCTCT
101246464 TTACTAATAG-TTTTTTTAA
1 TTACTAATAGTTTTTTTTAA
101246483 TTACTAATAGTTTTTTTTAA
1 TTACTAATAGTTTTTTTTAA
101246503 TT
1 TT
101246505 TTAAAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.61
Consensus pattern (20 bp):
TTACTAATAGTTTTTTTTAA
Found at i:101248457 original size:26 final size:26
Alignment explanation
Indices: 101248417--101248472 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
101248407 ATAAAATAAT
101248417 AATATAATAAATAATACA-AATTTAAA
1 AATATAATAAATAATA-ATAATTTAAA
** *
101248443 AATATAATACTTAATAATAATTTCAA
1 AATATAATAAATAATAATAATTTAAA
101248469 AATA
1 AATA
101248473 GCATTTACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (26 bp):
AATATAATAAATAATAATAATTTAAA
Found at i:101250058 original size:21 final size:21
Alignment explanation
Indices: 101250003--101250049 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
101249993 CATTTGTAAA
*
101250003 ATTTTATTACTTTATTTATTT
1 ATTTTAGTACTTTATTTATTT
101250024 ATTTTAGTACTTTATTTATTT
1 ATTTTAGTACTTTATTTATTT
101250045 ATTTT
1 ATTTT
101250050 TCATTTTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.70
Consensus pattern (21 bp):
ATTTTAGTACTTTATTTATTT
Found at i:101250227 original size:27 final size:27
Alignment explanation
Indices: 101250184--101250252 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 27
101250174 TAATTAATTT
101250184 TTTTTAAAATTTATATAATTAAAAAAT-A
1 TTTTT-AAATTT-TATAATTAAAAAATAA
***
101250212 TTTTTAATATTTTATAATTTTTAAATAA
1 TTTTTAA-ATTTTATAATTAAAAAATAA
101250240 TTTTTAAATTTTA
1 TTTTTAAATTTTA
101250253 AAAATATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 19 0.53
28 17 0.47
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (27 bp):
TTTTTAAATTTTATAATTAAAAAATAA
Found at i:101250249 original size:19 final size:20
Alignment explanation
Indices: 101250216--101250273 Score: 75
Period size: 19 Copynumber: 2.9 Consensus size: 20
101250206 AAAATATTTT
101250216 TAATATTTTATAATTTTTAAA
1 TAAT-TTTTATAATTTTTAAA
101250237 TAATTTTTA-AA-TTTTAAA
1 TAATTTTTATAATTTTTAAA
*
101250255 AATATTTTTATAATTTTTA
1 TA-ATTTTTATAATTTTTA
101250274 TGAAGTTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 8 0.24
19 9 0.27
20 7 0.21
21 9 0.27
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TAATTTTTATAATTTTTAAA
Found at i:101250259 original size:38 final size:38
Alignment explanation
Indices: 101250217--101250294 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
101250207 AAATATTTTT
*
101250217 AATA-TTTTATAATTTTTAAAT-AATTTTTAAATTTTAAA
1 AATATTTTTATAATTTTT--ATGAAGTTTTAAATTTTAAA
101250255 AATATTTTTATAATTTTTATGAAGTTTTAAATTTTAAA
1 AATATTTTTATAATTTTTATGAAGTTTTAAATTTTAAA
101250293 AA
1 AA
101250295 AAATTAATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
37 2 0.05
38 22 0.59
39 13 0.35
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (38 bp):
AATATTTTTATAATTTTTATGAAGTTTTAAATTTTAAA
Found at i:101250267 original size:28 final size:28
Alignment explanation
Indices: 101250207--101250273 Score: 77
Period size: 28 Copynumber: 2.4 Consensus size: 28
101250197 TATAATTAAA
*
101250207 AAAT-ATTTTTAATATTTTATAATTTTT
1 AAATAATTTTTAATATTTTAAAATTTTT
101250234 AAATAATTTTTAA-ATTTTAAAAATATTTT
1 AAATAATTTTTAATATTTT-AAAAT-TTTT
*
101250263 -TATAATTTTTA
1 AAATAATTTTTA
101250274 TGAAGTTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
27 9 0.26
28 22 0.63
29 4 0.11
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (28 bp):
AAATAATTTTTAATATTTTAAAATTTTT
Found at i:101251678 original size:4 final size:4
Alignment explanation
Indices: 101251669--101251716 Score: 51
Period size: 4 Copynumber: 11.5 Consensus size: 4
101251659 CTTTTTCCCC
* **
101251669 TTAT TTAT TTAT TTAT TTATT TTCT TTCCC TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTA-T TTAT TT-AT TTAT TTAT TTAT TTAT TT
101251717 TCTTTTGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
4 32 0.84
5 6 0.16
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (4 bp):
TTAT
Found at i:101251728 original size:26 final size:26
Alignment explanation
Indices: 101251673--101251730 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
101251663 TTCCCCTTAT
*
101251673 TTATTTATTTATTTATTTTCTTTCCC
1 TTATTTATTTATTTATTTTCTTTCCA
**
101251699 TTATTTATTTATTTATTTTCTTTTGA
1 TTATTTATTTATTTATTTTCTTTCCA
101251725 TTATTT
1 TTATTT
101251731 TTATCAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.17, C:0.09, G:0.02, T:0.72
Consensus pattern (26 bp):
TTATTTATTTATTTATTTTCTTTCCA
Found at i:101252847 original size:17 final size:17
Alignment explanation
Indices: 101252827--101252859 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
101252817 ATTAATAATT
*
101252827 ATATTTTAACTAATAAA
1 ATATTTTAAATAATAAA
101252844 ATATTTTAAATAATAA
1 ATATTTTAAATAATAA
101252860 TCACATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
ATATTTTAAATAATAAA
Found at i:101255180 original size:14 final size:15
Alignment explanation
Indices: 101255161--101255217 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
101255151 AATCTTTAAG
101255161 GATATG-CAATCTTA
1 GATATGACAATCTTA
101255175 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
101255192 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
101255211 GATATGA
1 GATATGA
101255218 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:101255202 original size:36 final size:38
Alignment explanation
Indices: 101255161--101255239 Score: 126
Period size: 36 Copynumber: 2.1 Consensus size: 38
101255151 AATCTTTAAG
101255161 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
101255197 GATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
101255237 GAT
1 GAT
101255240 CTTATCTTGG
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
40 9 0.23
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:101255208 original size:19 final size:19
Alignment explanation
Indices: 101255161--101255239 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
101255151 AATCTTTAAG
101255161 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
101255180 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
101255197 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
101255216 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
101255237 GAT
1 GAT
101255240 CTTATCTTGG
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:101255632 original size:24 final size:24
Alignment explanation
Indices: 101255601--101255648 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
101255591 TTATTTTCAA
*
101255601 ATATATATT-TCTATGCATGTATAT
1 ATATATATTATATAT-CATGTATAT
101255625 ATATATATTATATATCATGTATAT
1 ATATATATTATATATCATGTATAT
101255649 CGTATATCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (24 bp):
ATATATATTATATATCATGTATAT
Found at i:101256855 original size:23 final size:20
Alignment explanation
Indices: 101256839--101256886 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 20
101256829 TATATATAAA
101256839 TTTTATTATATGTTATATAT
1 TTTTATTATATGTTATATAT
*
101256859 TTTTATTATA--TTATTTA-
1 TTTTATTATATGTTATATAT
101256876 TTTTATTATAT
1 TTTTATTATAT
101256887 TTTTATATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 10 0.38
18 6 0.23
20 10 0.38
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTTATTATATGTTATATAT
Found at i:101256864 original size:20 final size:18
Alignment explanation
Indices: 101256827--101256894 Score: 75
Period size: 18 Copynumber: 3.7 Consensus size: 18
101256817 TTTGTAACAC
* *
101256827 TATATATATAAATTTTAT
1 TATATTTATATATTTTAT
101256845 TATATGTTATATATTTTTAT
1 TATAT-TTATATA-TTTTAT
*
101256865 TATA-TTATTTATTTTAT
1 TATATTTATATATTTTAT
*
101256882 TATATTTTTATAT
1 TATATTTATATAT
101256895 GTAAAATATT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
17 10 0.24
18 17 0.40
19 5 0.12
20 10 0.24
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (18 bp):
TATATTTATATATTTTAT
Found at i:101256893 original size:25 final size:28
Alignment explanation
Indices: 101256841--101256894 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
101256831 TATATAAATT
*
101256841 TTATTATATGTTATATATTTTTATTATA
1 TTATTATATGTTATATATATTTATTATA
*
101256869 TTATT-TATTTTAT-TATATTT-TTATA
1 TTATTATATGTTATATATATTTATTATA
101256894 T
1 T
101256895 GTAAAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 6 0.25
26 6 0.25
27 7 0.29
28 5 0.21
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (28 bp):
TTATTATATGTTATATATATTTATTATA
Found at i:101265009 original size:26 final size:26
Alignment explanation
Indices: 101264980--101265035 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
101264970 TGATAAAAAT
101264980 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101265006 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101265032 TGAT
1 TGAT
101265036 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:101270644 original size:17 final size:17
Alignment explanation
Indices: 101270622--101270655 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
101270612 ATATCATATC
101270622 ATATCATATCTAAGATT
1 ATATCATATCTAAGATT
101270639 ATATCATATCTAAGATT
1 ATATCATATCTAAGATT
101270656 GCATATCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (17 bp):
ATATCATATCTAAGATT
Found at i:101270648 original size:5 final size:5
Alignment explanation
Indices: 101270606--101270631 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
101270596 CTCAAGATTG
101270606 CATAT CATAT CATAT CATAT CATAT C
1 CATAT CATAT CATAT CATAT CATAT C
101270632 TAAGATTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (5 bp):
CATAT
Found at i:101272886 original size:46 final size:46
Alignment explanation
Indices: 101272834--101273198 Score: 473
Period size: 46 Copynumber: 8.0 Consensus size: 46
101272824 GCTTTTTGAA
* *
101272834 ATGAAATGTGTAAGACCATGATTGAAAGATACCAGGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
101272880 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
101272926 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
101272972 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
101273018 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATATGA-
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * ** ** * *
101273063 CGGGAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * *
101273109 ATGAAATGAGCAAGACCATGGTTGAAAGATACCATGGCAACCTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * *
101273155 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
101273199 TCAAAGATAA
Statistics
Matches: 283, Mismatches: 34, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
45 38 0.13
46 245 0.87
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:101273146 original size:183 final size:184
Alignment explanation
Indices: 101272837--101273183 Score: 493
Period size: 183 Copynumber: 1.9 Consensus size: 184
101272827 TTTTGAAATG
* **
101272837 AAATGTGTAAGACCATGATTGAAAGATACCAGGGCAACATGATATGAAATGTGTAAGACCATGGT
1 AAATGTGTAAGACCATGATTGAAAGATACCAGGGCAACATGATAGGAAATGAATAAGACCATGGT
* * * *
101272902 TGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACAGAACATAAAATGAGCAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
101272967 ATGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGACAACAGGATATA
131 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGATACCATGACAACAGGATATA
* * * * *
101273021 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATATGA-CGGGAATGAATAAGACCATGGT
1 AAATGTGTAAGACCATGATTGAAAGATACCAGGGCAACATGATAGGAAATGAATAAGACCATGGT
* *
101273085 TGAAAGATACCATGGCAA-TGTAACATGAAATGAGCAAGACCATGGTTGAAAGATACCATGGCAA
66 TGAAAGATACCATGGCAACAG-AACATAAAATGAGCAAGACCATGGTTGAAAGATACCATGGCAA
*
101273149 CCTGACAGAAAATGAGTAAGACCATAGTTGAAAGA
130 CATGACAGAAAATGAGTAAGACCATAGTTGAAAGA
101273184 CACTATGGCA
Statistics
Matches: 143, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
182 2 0.01
183 102 0.71
184 39 0.27
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (184 bp):
AAATGTGTAAGACCATGATTGAAAGATACCAGGGCAACATGATAGGAAATGAATAAGACCATGGT
TGAAAGATACCATGGCAACAGAACATAAAATGAGCAAGACCATGGTTGAAAGATACCATGGCAAC
ATGACAGAAAATGAGTAAGACCATAGTTGAAAGATACCATGACAACAGGATATA
Found at i:101273212 original size:137 final size:137
Alignment explanation
Indices: 101272834--101273215 Score: 457
Period size: 137 Copynumber: 2.8 Consensus size: 137
101272824 GCTTTTTGAA
* *
101272834 ATGAAATGTGTAAGACCATGATTGAAAGATACCAGGGCAACATGATATG-AAATGTGTAAGACCA
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA-GAAAATGTGTAAGACCA
* * * **
101272898 TGGTTGAAAGATACCATGGCAACAGGAT-ATAAAATGTGTAAGACCATGGTTGAAAGATACCATG
65 TGGTTGAAAGATACCATGGCATCATG-TCA-AAGATGAATAAGACCATGGTTGAAAGATACCATG
* *
101272962 GCAACATGAT
128 GCAACATAAC
* * *
101272972 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACAGGATATAAAATGTGTAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAGAAAATGTGTAAGACCAT
* **
101273037 GGTTGAAAGATACCATGGCAAT-ATGAC-GGGAATGAATAAGACCATGGTTGAAAGATACCATGG
66 GGTTGAAAGATACCATGGC-ATCATGTCAAAG-ATGAATAAGACCATGGTTGAAAGATACCATGG
**
101273100 CAATGTAAC
129 CAACATAAC
* * * * *
101273109 ATGAAATGAGCAAGACCATGGTTGAAAGATACCATGGCAACCTGACAGAAAATGAGTAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAGAAAATGTGTAAGACCAT
* * * *
101273174 AGTTGAAAGACACTATGGCATCATGTCAAAGATAAATAAGAC
66 GGTTGAAAGATACCATGGCATCATGTCAAAGATGAATAAGAC
101273216 TGTGGATGGG
Statistics
Matches: 206, Mismatches: 32, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
136 2 0.01
137 122 0.59
138 81 0.39
139 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (137 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAGAAAATGTGTAAGACCAT
GGTTGAAAGATACCATGGCATCATGTCAAAGATGAATAAGACCATGGTTGAAAGATACCATGGCA
ACATAAC
Found at i:101278494 original size:26 final size:26
Alignment explanation
Indices: 101278465--101278571 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
101278455 TGGTACAAAT
101278465 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
101278491 TGATAACGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101278517 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101278543 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
101278568 TGAT
1 TGAT
101278572 GGAATTTCAT
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
25 6 0.08
26 71 0.92
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:101281438 original size:16 final size:17
Alignment explanation
Indices: 101281417--101281449 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
101281407 ATGATGGAGC
101281417 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
101281433 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
101281450 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:101283382 original size:20 final size:20
Alignment explanation
Indices: 101283359--101283406 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
101283349 TAAAACCATT
101283359 AAAATTATAAAAAAATAAAA
1 AAAATTATAAAAAAATAAAA
* ** *
101283379 AAAAATATTTAAAAATGAAA
1 AAAATTATAAAAAAATAAAA
*
101283399 AAAGTTAT
1 AAAATTAT
101283407 TAAATTATAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (20 bp):
AAAATTATAAAAAAATAAAA
Found at i:101283479 original size:20 final size:19
Alignment explanation
Indices: 101283428--101283479 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 19
101283418 AAAGCGCACA
* *
101283428 AAATTATAAAAATTAGTAT
1 AAATTATAAAAAATAATAT
*
101283447 AAATGATACAAAAATAATAT
1 AAATTATA-AAAAATAATAT
*
101283467 AAATTATTAAAAA
1 AAATTATAAAAAA
101283480 CTTGCAAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (19 bp):
AAATTATAAAAAATAATAT
Found at i:101285792 original size:27 final size:27
Alignment explanation
Indices: 101285663--101285825 Score: 90
Period size: 27 Copynumber: 6.1 Consensus size: 27
101285653 AGGTTACAAA
*
101285663 TTAAGATAATTAAGAATTTAAATTTAAA
1 TTAAGATAATTAAGAATTTAAATTT-AG
* * * * *
101285691 TTAGGGT-ATTTAGAGTTTTAATTTAG
1 TTAAGATAATTAAGAATTTAAATTTAG
* * *
101285717 ATAAGATAATTAGGAATTTAAATAATAGG
1 TTAAGATAATTAAGAATTTAAAT-TTA-G
*
101285746 TTAA-AT-A--AA-ATTTTAGAATTTAG
1 TTAAGATAATTAAGAATTTA-AATTTAG
* * *
101285769 TTAAGATAATTAAGAGTTTAAATTAAA
1 TTAAGATAATTAAGAATTTAAATTTAG
* *
101285796 TT-AGTATAATTAA-AATTTTAATTTAT
1 TTAAG-ATAATTAAGAATTTAAATTTAG
101285822 TTAA
1 TTAA
101285826 AAAGAGTTCT
Statistics
Matches: 99, Mismatches: 25, Indels: 23
0.67 0.17 0.16
Matches are distributed among these distances:
23 5 0.05
24 9 0.09
25 5 0.05
26 18 0.18
27 44 0.44
28 14 0.14
29 4 0.04
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.42
Consensus pattern (27 bp):
TTAAGATAATTAAGAATTTAAATTTAG
Found at i:101287683 original size:53 final size:52
Alignment explanation
Indices: 101287543--101287701 Score: 194
Period size: 52 Copynumber: 3.0 Consensus size: 52
101287533 GACGGAAAAT
* * * **
101287543 ATGTGATATGTGCTTCTGTATAAGACCATAGCAGGGTTATGGCATCGGTAAA
1 ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGGTATG
* * *
101287595 ATGTGAT-TCATGCTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATG
1 ATGTGATAT-GTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGGTATG
* * *
101287647 ATGTGATAATGTGATTCCGTATAAGACCATATCTGGGATATGACATCGGTATG
1 ATGTGAT-ATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGGTATG
101287700 AT
1 AT
101287702 ATGTGATCCG
Statistics
Matches: 91, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
51 1 0.01
52 50 0.55
53 39 0.43
54 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.31
Consensus pattern (52 bp):
ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGGTATG
Found at i:101293819 original size:23 final size:23
Alignment explanation
Indices: 101293793--101293836 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
101293783 ATGCACATCA
*
101293793 GTTTACAGTTTCGATAATTATCT
1 GTTTACAATTTCGATAATTATCT
101293816 GTTTACAATTTCGATAATTAT
1 GTTTACAATTTCGATAATTAT
101293837 TAGCAGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (23 bp):
GTTTACAATTTCGATAATTATCT
Found at i:101294268 original size:5 final size:5
Alignment explanation
Indices: 101294258--101294347 Score: 51
Period size: 5 Copynumber: 17.0 Consensus size: 5
101294248 GGTCTTTCTC
* **
101294258 CTTTT CTTTT CTTTT C-TTT CCTTT CTCTTT CTTTTT CCCTT CTGTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CT-TTT C-TTTT CTTTT CT-TTT
*
101294305 CGTTTGT -TCTTT C-TTT CTTTT CTATTT CTATTT CTTTT ATTTT
1 C-TTT-T CT-TTT CTTTT CTTTT CT-TTT CT-TTT CTTTT CTTTT
101294348 ATTATTATAA
Statistics
Matches: 69, Mismatches: 6, Indels: 20
0.73 0.06 0.21
Matches are distributed among these distances:
4 8 0.12
5 32 0.46
6 26 0.38
7 3 0.04
ACGTcount: A:0.03, C:0.22, G:0.03, T:0.71
Consensus pattern (5 bp):
CTTTT
Found at i:101296657 original size:27 final size:26
Alignment explanation
Indices: 101296615--101296720 Score: 88
Period size: 27 Copynumber: 4.0 Consensus size: 26
101296605 AGGAGGTTAC
101296615 AAATTAAGATAATTAAGAATTTAAATT
1 AAATTAAGATAATTAA-AATTTAAATT
* * * *
101296642 AAATTAGGATATTTAAAGTTTTAATT
1 AAATTAAGATAATTAAAATTTAAATT
* * *
101296668 -TATATAAGATAATTAGGAGTTTAAATT
1 AAAT-TAAGATAATTA-AAATTTAAATT
* * *
101296695 AAATTAATATATTTAAAATTTTAATT
1 AAATTAAGATAATTAAAATTTAAATT
101296721 TATTTAAAAA
Statistics
Matches: 61, Mismatches: 15, Indels: 7
0.73 0.18 0.08
Matches are distributed among these distances:
25 2 0.03
26 25 0.41
27 32 0.52
28 2 0.03
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.43
Consensus pattern (26 bp):
AAATTAAGATAATTAAAATTTAAATT
Found at i:101296699 original size:53 final size:53
Alignment explanation
Indices: 101296619--101296723 Score: 165
Period size: 53 Copynumber: 2.0 Consensus size: 53
101296609 GGTTACAAAT
* *
101296619 TAAGATAATTAAGAATTTAAATTAAATTAGGATATTTAAAGTTTTAATTTATA
1 TAAGATAATTAAGAATTTAAATTAAATTAAGATATTTAAAATTTTAATTTATA
* * *
101296672 TAAGATAATTAGGAGTTTAAATTAAATTAATATATTTAAAATTTTAATTTAT
1 TAAGATAATTAAGAATTTAAATTAAATTAAGATATTTAAAATTTTAATTTAT
101296724 TTAAAAAGAG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.45
Consensus pattern (53 bp):
TAAGATAATTAAGAATTTAAATTAAATTAAGATATTTAAAATTTTAATTTATA
Found at i:101297827 original size:168 final size:166
Alignment explanation
Indices: 101297544--101298051 Score: 693
Period size: 168 Copynumber: 3.0 Consensus size: 166
101297534 CTTTGGGAAC
* * * *
101297544 TCATGTTTATGTTCCTTATCCTCATCTTGTTTTTCCTTGCACTCGGGTATTTTTGGATATTCGGC
1 TCATCTTTATGTTCCTTATCCTCATCTTG-TTTTCCTTGTACTCGGGTATTTTCGGATATTCGAC
* *
101297609 ATTATGTTTCTCATGCTCTTTAGGCTTTTCCCATTTGGGGAAATCGGGTTTTTCTTTCTAGTACT
65 -TTGTGTTTCTCGTGCTCTTTAGGCTTTTCCCATTTGGGGAAATCGGGTTTTTCTTTCTAGTACT
*
101297674 CTTCGTGCTCTTTCGATTCGTGTGACTCGTGGCACTCT
129 CTTCGTGCTCTTTCGATTCGTGTGACTCGTGGAACTCT
* * *
101297712 TCATCTTTATGTTCCTTA-CTCTTATCTTGCTCTTCCTTGTACT-GGGTTATTTCCGGATATTCG
1 TCATCTTTATGTTCCTTATC-CTCATCTTG-TTTTCCTTGTACTCGGG-TATTTTCGGATATTCG
* ** *
101297775 ACTTGGTGTTTCTCGTGCTCTTTAGGCTTTTGCTGTTTGGGGAACTCGGGTTTTTCTTTCTCA-T
63 ACTT-GTGTTTCTCGTGCTCTTTAGGCTTTTCCCATTTGGGGAAATCGGGTTTTTCTTTCT-AGT
* *
101297839 ACTCTTCGTGCTCCTTT-GATTCGCGTGATTCGTGGAACTCT
126 ACTCTTCGTGCT-CTTTCGATTCGTGTGACTCGTGGAACTCT
*
101297880 TCATTTTTATGTTCCTTATCCTCATCTTGTTTGTCCTTGTACTCGGGTATTTTCGGATATTCGAC
1 TCATCTTTATGTTCCTTATCCTCATCTTGTTT-TCCTTGTACTCGGGTATTTTCGGATATTCGAC
* * *
101297945 TTCGTGTTTCTCGTGCTCTTTAGGCTTTTCCCATTTGGGGAAATCGGGTTTGTCTTTATTGTACT
65 TT-GTGTTTCTCGTGCTCTTTAGGCTTTTCCCATTTGGGGAAATCGGGTTTTTCTTTCTAGTACT
*
101298010 CTTCGTGCT-TCTTCGATTCGTGTGACTCGTGGTACTCT
129 CTTCGTGCTCT-TTCGATTCGTGTGACTCGTGGAACTCT
101298048 TCAT
1 TCAT
101298052 GTTGTTTGTA
Statistics
Matches: 297, Mismatches: 32, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
166 1 0.00
167 10 0.03
168 277 0.93
169 9 0.03
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.47
Consensus pattern (166 bp):
TCATCTTTATGTTCCTTATCCTCATCTTGTTTTCCTTGTACTCGGGTATTTTCGGATATTCGACT
TGTGTTTCTCGTGCTCTTTAGGCTTTTCCCATTTGGGGAAATCGGGTTTTTCTTTCTAGTACTCT
TCGTGCTCTTTCGATTCGTGTGACTCGTGGAACTCT
Found at i:101299762 original size:7 final size:7
Alignment explanation
Indices: 101299750--101299785 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
101299740 TTTTTTATAC
101299750 TAATAAA
1 TAATAAA
101299757 TAATAAA
1 TAATAAA
101299764 TAATGAAA
1 TAAT-AAA
*
101299772 TAATATA
1 TAATAAA
101299779 TAATAAA
1 TAATAAA
101299786 AGGAAGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:101299774 original size:15 final size:14
Alignment explanation
Indices: 101299750--101299785 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
101299740 TTTTTTATAC
101299750 TAATAAATAATAAA
1 TAATAAATAATAAA
*
101299764 TAATGAAATAATATA
1 TAAT-AAATAATAAA
101299779 TAATAAA
1 TAATAAA
101299786 AGGAAGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (14 bp):
TAATAAATAATAAA
Found at i:101299818 original size:10 final size:10
Alignment explanation
Indices: 101299803--101299875 Score: 62
Period size: 10 Copynumber: 7.2 Consensus size: 10
101299793 TAATATAGGG
101299803 AATAATATAT
1 AATAATATAT
101299813 AATAATATAT
1 AATAATATAT
* *
101299823 GAT-ATGTAAT
1 AATAATAT-AT
101299833 AA-AATATAT
1 AATAATATAT
*
101299842 AAATAAAATAT
1 -AATAATATAT
101299853 AATGAA-ATAT
1 AAT-AATATAT
101299863 AATAATATGAT
1 AATAATAT-AT
101299874 AA
1 AA
101299876 CTATCATATA
Statistics
Matches: 51, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
9 7 0.14
10 32 0.63
11 12 0.24
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.34
Consensus pattern (10 bp):
AATAATATAT
Found at i:101300080 original size:11 final size:12
Alignment explanation
Indices: 101300014--101300084 Score: 51
Period size: 12 Copynumber: 6.1 Consensus size: 12
101300004 ATAGTAAAAT
*
101300014 ATATAATGTATA
1 ATATAATGAATA
*
101300026 ATA-AATTTAA-A
1 ATATAA-TGAATA
* *
101300037 ATAAAATGTATA
1 ATATAATGAATA
*
101300049 ATAATAA-AAATA
1 AT-ATAATGAATA
101300061 ATATAATGAATA
1 ATATAATGAATA
101300073 ATAT-ATGAATA
1 ATATAATGAATA
101300084 A
1 A
101300085 AAAATAATAT
Statistics
Matches: 46, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
11 20 0.43
12 23 0.50
13 3 0.07
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.34
Consensus pattern (12 bp):
ATATAATGAATA
Found at i:101301835 original size:44 final size:44
Alignment explanation
Indices: 101301772--101302540 Score: 944
Period size: 44 Copynumber: 17.5 Consensus size: 44
101301762 TGCTTTCTGT
* * *
101301772 AGAGACGCCACATCTGCTATCCTT-GATCTGCTCTTTGTCAATAC
1 AGAGACGCCAAATCTGCTAT-CTTCGATCTGCTCTCTGACAATAC
* * *
101301816 AGAGATGCCAAACCTGCTATC-TCTGATCTGCTCT-TTATCAATAC
1 AGAGACGCCAAATCTGCTATCTTC-GATCTGCTCTCTGA-CAATAC
* * * * *
101301860 AGAGACGCCAAATCTGTTACCTTTGATCTGCTCTCTGTCAATAT
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
* * *
101301904 AGAGATGACAAATCTGCTATCTTCG-TCCTGCTCTCTGTCAATAC
1 AGAGACGCCAAATCTGCTATCTTCGAT-CTGCTCTCTGACAATAC
* *
101301948 AGAGACACCAAATCTACTATCTTCGATCTGCTCTCT-AGCAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGA-CAATAC
* * * * *
101301992 AGAAACGCAAAATCT-ATCATCTTCAATCTACTCTCTGACAATAC
1 AGAGACGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGACAATAC
* **
101302036 AGAGATGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTTAATAC
1 AGAGACGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGACAATAC
* * *
101302080 AGAGACGCCAAATCTGCTATCTTTGATTTTCTCTCTGACAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
* * * *
101302124 AGAGACACCAAATTTGCTATCTTAGATCTGCTTTCTGACAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
*
101302168 AGAGACGCCAAATCTGCTATCTTTGATCTGCTCTCTGACAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
* *
101302212 AGAGACGCCAAATATG-TCATCTTCGATCTGCTCTCTGTCAATAC
1 AGAGACGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGACAATAC
* * ** *
101302256 AGAGACGCCAAATCTACTATCTTTGATCTATTCTCTGACAATAT
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
101302300 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
*
101302344 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTTTGACAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
* * *
101302388 AGATAAGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTCAATAC
1 AGAGACGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGACAATAC
* *
101302432 AGAGACGCCAAATCTACTATCTTTGATCTGCTCTCTGACAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
* * * *
101302476 AGAGACGCCAAATCTACTATCTTCAATTTGCTCTCTGATAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
*
101302520 AGAGACGCCAAATCAGCTATC
1 AGAGACGCCAAATCTGCTATC
101302541 GGTGATCTAC
Statistics
Matches: 625, Mismatches: 84, Indels: 32
0.84 0.11 0.04
Matches are distributed among these distances:
42 1 0.00
43 6 0.01
44 611 0.98
45 7 0.01
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.31
Consensus pattern (44 bp):
AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
Found at i:101307713 original size:22 final size:23
Alignment explanation
Indices: 101307687--101307730 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
101307677 CCTGATCAGA
101307687 ATACGACACAT-AAGTGCCTGAC
1 ATACGACACATAAAGTGCCTGAC
101307709 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
101307731 TCAGTAAAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.18
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAC
Found at i:101308017 original size:29 final size:28
Alignment explanation
Indices: 101307935--101308018 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
101307925 AACACACTGG
* * *
101307935 TATAATCCTCCAAAACACACTAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
*
101307963 TATAATCCTCCCAAACACACCAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
101307991 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
101308019 GCACAAAGTG
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 32 0.64
29 18 0.36
ACGTcount: A:0.46, C:0.30, G:0.04, T:0.20
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:101313597 original size:30 final size:30
Alignment explanation
Indices: 101313561--101313620 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
101313551 TATAAAGGTG
101313561 GTTTTATCCATGTCC-CTAGGATGCATCTTT
1 GTTTTATCCATGTCCTC-AGGATGCATCTTT
*
101313591 GTTTTATCCATGTTCTCAGGATGCATCTTT
1 GTTTTATCCATGTCCTCAGGATGCATCTTT
101313621 ATTTGATTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.45
Consensus pattern (30 bp):
GTTTTATCCATGTCCTCAGGATGCATCTTT
Found at i:101321634 original size:19 final size:19
Alignment explanation
Indices: 101321610--101321696 Score: 142
Period size: 19 Copynumber: 4.7 Consensus size: 19
101321600 AATCTTTAAG
101321610 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
101321629 GATATGCAGTCTTAGATAT
1 GATATGCAATCTTAGATAT
101321648 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
101321665 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
101321684 GATATGCAATCTT
1 GATATGCAATCTT
101321697 GAAGATAAGA
Statistics
Matches: 63, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
17 16 0.25
19 47 0.75
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:101321657 original size:36 final size:37
Alignment explanation
Indices: 101321610--101321696 Score: 131
Period size: 36 Copynumber: 2.3 Consensus size: 37
101321600 AATCTTTAAG
* *
101321610 GATATGCAATCTTAGATATGATATGCAGTCTTAGATAT
1 GATA-GCAATCTTAGATATGATATACAATCTTAGATAT
101321648 GATA-CAATCTTAGATATGATATACAATCTTAGATAT
1 GATAGCAATCTTAGATATGATATACAATCTTAGATAT
101321684 GATATGCAATCTT
1 GATA-GCAATCTT
101321697 GAAGATAAGA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
36 34 0.76
38 11 0.24
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (37 bp):
GATAGCAATCTTAGATATGATATACAATCTTAGATAT
Found at i:101324826 original size:13 final size:13
Alignment explanation
Indices: 101324808--101324837 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
101324798 ATATATGGTT
101324808 AATAGAAATAAAA
1 AATAGAAATAAAA
101324821 AATAGAAATAAAA
1 AATAGAAATAAAA
101324834 AATA
1 AATA
101324838 TACACGATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.17
Consensus pattern (13 bp):
AATAGAAATAAAA
Found at i:101325482 original size:23 final size:24
Alignment explanation
Indices: 101325456--101325505 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
101325446 AATACTACAT
*
101325456 AAATATATACGCAAAT-ATATTAA
1 AAATATATACACAAATCATATTAA
*
101325479 AAATATATACACATATCATATTAA
1 AAATATATACACAAATCATATTAA
101325503 AAA
1 AAA
101325506 AAGAATATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 14 0.58
24 10 0.42
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.30
Consensus pattern (24 bp):
AAATATATACACAAATCATATTAA
Found at i:101325515 original size:27 final size:24
Alignment explanation
Indices: 101325483--101325531 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 24
101325473 TATTAAAAAT
101325483 ATATACACATATCATATTAAAAAAAGA
1 ATATACACA-AT-ATA-TAAAAAAAGA
*
101325510 ATATACATAATATATAAAAAAA
1 ATATACACAATATATAAAAAAA
101325532 CATGATATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 8 0.38
25 3 0.14
26 2 0.10
27 8 0.38
ACGTcount: A:0.63, C:0.08, G:0.02, T:0.27
Consensus pattern (24 bp):
ATATACACAATATATAAAAAAAGA
Found at i:101325517 original size:25 final size:22
Alignment explanation
Indices: 101325472--101325575 Score: 57
Period size: 23 Copynumber: 4.5 Consensus size: 22
101325462 ATACGCAAAT
* *
101325472 ATATTAAAAATATATACACATA
1 ATATTAAAAAAAAATACACATA
*
101325494 TCATATTAAAAAAAGAATATACATA
1 --ATATTAAAAAAA-AATACACATA
* * * *
101325519 ATATATAAAAAAACAT-GATATG
1 ATAT-TAAAAAAAAATACACATA
* * *
101325541 GTAATTAAAAAAGAATATACATA
1 AT-ATTAAAAAAAAATACACATA
101325564 ATATATAAAAAA
1 ATAT-TAAAAAA
101325576 CATGATATGG
Statistics
Matches: 61, Mismatches: 14, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
22 15 0.25
23 19 0.31
24 19 0.31
25 8 0.13
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.28
Consensus pattern (22 bp):
ATATTAAAAAAAAATACACATA
Found at i:101325522 original size:23 final size:24
Alignment explanation
Indices: 101325496--101325575 Score: 80
Period size: 24 Copynumber: 3.5 Consensus size: 24
101325486 TACACATATC
101325496 ATAT-TAAAAAAAGAATATACATA
1 ATATATAAAAAAAGAATATACATA
* *
101325519 ATATATAAAAAAA-CATGAT--ATG
1 ATATATAAAAAAAGAAT-ATACATA
* *
101325541 GTA-ATTAAAAAAGAATATACATA
1 ATATATAAAAAAAGAATATACATA
101325564 ATATATAAAAAA
1 ATATATAAAAAA
101325576 CATGATATGG
Statistics
Matches: 43, Mismatches: 8, Indels: 11
0.69 0.13 0.18
Matches are distributed among these distances:
21 10 0.23
22 6 0.14
23 10 0.23
24 17 0.40
ACGTcount: A:0.64, C:0.04, G:0.06, T:0.26
Consensus pattern (24 bp):
ATATATAAAAAAAGAATATACATA
Done.