Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 314 of 325
Found at i:101325576 original size:44 final size:45
Alignment explanation
Indices: 101325502--101325587 Score: 165
Period size: 45 Copynumber: 1.9 Consensus size: 45
101325492 TATCATATTA
101325502 AAAAAAGAATATACATAATATATAAAAAAACATGATATGGTAATT
1 AAAAAAGAATATACATAATATATAAAAAAACATGATATGGTAATT
101325547 AAAAAAGAATATACATAATATAT-AAAAAACATGATATGGTA
1 AAAAAAGAATATACATAATATATAAAAAAACATGATATGGTA
101325588 TTTGAAATAT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 18 0.44
45 23 0.56
ACGTcount: A:0.60, C:0.05, G:0.09, T:0.26
Consensus pattern (45 bp):
AAAAAAGAATATACATAATATATAAAAAAACATGATATGGTAATT
Found at i:101325583 original size:25 final size:25
Alignment explanation
Indices: 101325469--101325583 Score: 70
Period size: 25 Copynumber: 4.8 Consensus size: 25
101325459 TATATACGCA
* * *
101325469 AATATATTAAAAATAT-ATACACAT
1 AATATATAAAAAACATGATATACAT
101325493 -ATCATATTAAAAAA-A-GAATATACAT
1 AAT-ATA-TAAAAAACATG-ATATACAT
**
101325518 AATATATAAAAAAACATGATAT-GGT
1 AATATAT-AAAAAACATGATATACAT
*
101325543 -A-AT-TAAAAAAGA--ATATACAT
1 AATATATAAAAAACATGATATACAT
101325563 AATATATAAAAAACATGATAT
1 AATATATAAAAAACATGATAT
101325584 GGTATTTGAA
Statistics
Matches: 69, Mismatches: 8, Indels: 27
0.66 0.08 0.26
Matches are distributed among these distances:
19 4 0.06
20 1 0.01
21 8 0.12
22 3 0.04
23 12 0.17
24 6 0.09
25 27 0.39
26 7 0.10
27 1 0.01
ACGTcount: A:0.60, C:0.06, G:0.05, T:0.29
Consensus pattern (25 bp):
AATATATAAAAAACATGATATACAT
Found at i:101326038 original size:20 final size:20
Alignment explanation
Indices: 101325951--101326038 Score: 62
Period size: 20 Copynumber: 4.5 Consensus size: 20
101325941 TATAATATTC
101325951 AAAATATATACATGATATAT
1 AAAATATATACATGATATAT
* *
101325971 GTAAA-A-GTACA--ATAT-T
1 -AAAATATATACATGATATAT
*
101325987 ACAAGATATATACGTGATATAT
1 A-AA-ATATATACATGATATAT
*
101326009 AAAATGTATACATGATATAT
1 AAAATATATACATGATATAT
101326029 AGAAA-ATATA
1 A-AAATATATA
101326039 ATATTTAAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 17
0.67 0.11 0.22
Matches are distributed among these distances:
16 3 0.06
17 5 0.10
18 1 0.02
19 7 0.14
20 21 0.41
21 12 0.24
22 2 0.04
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.32
Consensus pattern (20 bp):
AAAATATATACATGATATAT
Found at i:101326067 original size:58 final size:56
Alignment explanation
Indices: 101325942--101326068 Score: 132
Period size: 58 Copynumber: 2.2 Consensus size: 56
101325932 ATAAAAAAAT
*
101325942 ATAATATTCAAAATATATACATGATATATGTAAAAGTACAATATTACAAGATATATAC
1 ATAATA-T-AAAATATATACATGATATATGTAAAAGTACAATATTAAAAGATATATAC
* * *
101326000 GTGATATATAAAATGTATACATGATATATAG-AAAA-TATAATATTTAAAAGAATAATATAC
1 AT-A-ATATAAAATATATACATGATATAT-GTAAAAGTACAATA-TTAAAAG-AT-ATATAC
101326060 ATAATATAA
1 ATAATATAA
101326069 GAGTATTTAA
Statistics
Matches: 58, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
57 6 0.10
58 36 0.62
59 6 0.10
60 10 0.17
ACGTcount: A:0.54, C:0.06, G:0.08, T:0.33
Consensus pattern (56 bp):
ATAATATAAAATATATACATGATATATGTAAAAGTACAATATTAAAAGATATATAC
Found at i:101326070 original size:20 final size:19
Alignment explanation
Indices: 101326015--101326070 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
101326005 ATATAAAATG
*
101326015 TATACATGATATATAGAAAA
1 TATACATAATATA-AGAAAA
* *
101326035 TATA-ATATTTAAAAGAATAA
1 TATACATA-ATATAAGAA-AA
101326055 TATACATAATATAAGA
1 TATACATAATATAAGA
101326071 GTATTTAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
19 6 0.21
20 19 0.68
21 3 0.11
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.32
Consensus pattern (19 bp):
TATACATAATATAAGAAAA
Found at i:101326439 original size:19 final size:19
Alignment explanation
Indices: 101326415--101326458 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
101326405 ATAATATTAG
101326415 AATAATAATGAA-AATATTT
1 AATAATAAT-AACAATATTT
101326434 AATAATAATAACAATATTT
1 AATAATAATAACAATATTT
101326453 AATAAT
1 AATAAT
101326459 GAAACAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 2 0.08
19 22 0.92
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (19 bp):
AATAATAATAACAATATTT
Found at i:101328371 original size:26 final size:26
Alignment explanation
Indices: 101328334--101328417 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
101328324 TGATACAAAT
* *
101328334 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
101328360 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
101328386 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
101328412 TGATAA
1 TGATAA
101328418 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:101337767 original size:19 final size:19
Alignment explanation
Indices: 101337739--101337775 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
101337729 CTTCTATTTT
101337739 AAAAAAAAA-GGAAAAAAG
1 AAAAAAAAAGGGAAAAAAG
101337757 AAAAGAAAAAGGGAAAAAA
1 AAAA-AAAAAGGGAAAAAA
101337776 AATAAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAGGGAAAAAAG
Found at i:101337771 original size:20 final size:18
Alignment explanation
Indices: 101337739--101337814 Score: 70
Period size: 16 Copynumber: 4.4 Consensus size: 18
101337729 CTTCTATTTT
101337739 AAAAAAAAAGGAAAAAAG
1 AAAAAAAAAGGAAAAAAG
*
101337757 AAAAGAAAAAGGGAAAAA-
1 AAAA-AAAAAGGAAAAAAG
* *
101337775 AAATAAAAA-TAAAAAAG
1 AAAAAAAAAGGAAAAAAG
* *
101337792 -AGAAAAAATG-AAAAAG
1 AAAAAAAAAGGAAAAAAG
101337808 AAAAAAA
1 AAAAAAA
101337815 TGGAGAGGCC
Statistics
Matches: 46, Mismatches: 8, Indels: 9
0.73 0.13 0.14
Matches are distributed among these distances:
16 17 0.37
17 10 0.22
18 7 0.15
19 12 0.26
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (18 bp):
AAAAAAAAAGGAAAAAAG
Found at i:101337776 original size:23 final size:22
Alignment explanation
Indices: 101337750--101337813 Score: 58
Period size: 23 Copynumber: 2.8 Consensus size: 22
101337740 AAAAAAAAGG
*
101337750 AAAAAAGAAAAGAAAAAGGGAAA
1 AAAAAAGAAAAGAAAAA-AGAAA
* *
101337773 AAAAATA-AAAATAAAAAAGAGA
1 AAAAA-AGAAAAGAAAAAAGAAA
*
101337795 AAAAATGAAAAAGAAAAAA
1 AAAAAAG-AAAAGAAAAAA
101337814 ATGGAGAGGC
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
22 8 0.24
23 24 0.73
24 1 0.03
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (22 bp):
AAAAAAGAAAAGAAAAAAGAAA
Found at i:101337791 original size:30 final size:31
Alignment explanation
Indices: 101337740--101337797 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
101337730 TTCTATTTTA
*
101337740 AAAAAAAAGGAAAAAAGAAAAGA-AAAAGGG
1 AAAAAAAAGGAAAAAAAAAAAGAGAAAAGGG
*
101337770 AAAAAAAA-TAAAAATAAAAAAGAGAAAA
1 AAAAAAAAGGAAAAA-AAAAAAGAGAAAA
101337798 AATGAAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.21
30 15 0.62
31 4 0.17
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (31 bp):
AAAAAAAAGGAAAAAAAAAAAGAGAAAAGGG
Found at i:101337812 original size:22 final size:22
Alignment explanation
Indices: 101337739--101337812 Score: 68
Period size: 22 Copynumber: 3.5 Consensus size: 22
101337729 CTTCTATTTT
101337739 AAAA-AAAAAG-GAAAAAA-G-
1 AAAAGAAAAAGAGAAAAAATGA
*
101337757 AAAAGAAAAAGGGAAAAAAAAT-A
1 AAAAGAAAAA--GAGAAAAAATGA
*
101337780 AAAATAAAAAAGAGAAAAAATGA
1 AAAA-GAAAAAGAGAAAAAATGA
101337803 AAAAGAAAAA
1 AAAAGAAAAA
101337813 AATGGAGAGG
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
18 4 0.09
19 5 0.11
21 1 0.02
22 20 0.45
23 9 0.20
24 5 0.11
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (22 bp):
AAAAGAAAAAGAGAAAAAATGA
Found at i:101338819 original size:43 final size:43
Alignment explanation
Indices: 101338772--101339411 Score: 239
Period size: 41 Copynumber: 15.3 Consensus size: 43
101338762 CGCCTTAATC
*
101338772 CCCTAAGCAATAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * * ** *
101338815 CCCTAAGCAGTAGTGG-AGCAGATCAAAGACT-C-G-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGTTAAA-TTTGCAGATCTT-ATCT
*
101338856 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCATATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
** * * * *
101338899 CCCTAAGCAGTAGTGG-AGTAGATCGAAGA-CT-C-G-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATCT
101338940 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * * ** * * * *
101338983 CTCTAAGTAGCAGTGG-AGTAGATCGAAGA-CT-C-G-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATCT
* *
101339024 CCTTAAGCAGTAGGGTAACAGGTTAAATTTGCATATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * * * * *
101339067 CCCTAAGCAGTAGCG-AAGCAGATCGACGA-CT-C-G-CCTTAATC-
1 CCCTAAGCAGTAGGGTAA-CAGGT-TA-AATTTGCAGATCTT-ATCT
*
101339108 CCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * * *
101339151 CCCTAAGCAGTAGTGG-AGCAGATTGAAGA-CT-C-G-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGTT-AA-ATTTGCAGATCTT-ATCT
* *
101339192 CCCTAAGAAGTAGGGTAACAGG-----TTCGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * ** **** ** *
101339230 CCCTAAGCAGTAGTGG-AGCAGATCGACGACGACTCACCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGTTAAATTTG-CAGATCTT-ATCT
101339274 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
** * * *** *
101339317 CCCTAAGCAGTAGTGG-AGTAGATTGAA-GACCCG-TCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGTTAAATTTGCAGATCTT-ATCT
*
101339358 CCCTAAGCAGTAGGGTAACAGGTTTAATTTGCAGATCTTA--T
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
*
101339399 CCCTAAGTAGTAG
1 CCCTAAGCAGTAG
101339412 CGGAGCAGAT
Statistics
Matches: 424, Mismatches: 109, Indels: 130
0.64 0.16 0.20
Matches are distributed among these distances:
36 1 0.00
37 4 0.01
38 19 0.04
39 5 0.01
40 19 0.04
41 139 0.33
42 47 0.11
43 136 0.32
44 47 0.11
45 7 0.02
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
Found at i:101338903 original size:84 final size:84
Alignment explanation
Indices: 101338762--101339458 Score: 1039
Period size: 84 Copynumber: 8.3 Consensus size: 84
101338752 CAAAATTCAG
*
101338762 CGCCTTAATCCCCTAAGCAATAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
101338827 GTGGAGCAGATCAAAGACT
66 GTGGAGCAGATCGAAGACT
*
101338846 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCATATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
101338911 GTGGAGTAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* * *
101338930 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCTCTAAGTAGCA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
101338995 GTGGAGTAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
101339014 CGCCTTAATCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCATATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * *
101339079 GCGAAGCAGATCGACGACT
66 GTGGAGCAGATCGAAGACT
*
101339098 CGCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
101339163 GTGGAGCAGATTGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
101339182 CGCCTTAATCCCCTAAGAAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
101339242 GTGGAGCAGATCGACGACGACT
66 GTGGAGCAGATCGA--A-GACT
*
101339264 CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * *
101339329 GTGGAGTAGATTGAAGACC
66 GTGGAGCAGATCGAAGACT
* * *
101339348 CGTCTTAATCCCCTAAGCAGTAGGGTAACAGGTTTAATTTGCAGATCTTA--TCCCTAAGTAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
101339411 GCGGAGCAGATCGAAGACGAT
66 GTGGAGCAGATCGAAGAC--T
* * *
101339432 GCACCTTAACCCCCTAAGCTGTAGGGT
1 -CGCCTTAATCCCCTAAGCAGTAGGGT
101339459 CCAAGATGAT
Statistics
Matches: 556, Mismatches: 46, Indels: 21
0.89 0.07 0.03
Matches are distributed among these distances:
79 40 0.07
81 1 0.00
82 61 0.11
84 392 0.71
85 23 0.04
87 39 0.07
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACT
Found at i:101339881 original size:15 final size:14
Alignment explanation
Indices: 101339847--101339895 Score: 55
Period size: 15 Copynumber: 3.5 Consensus size: 14
101339837 AACAAGTTCA
*
101339847 AAAAAAAGGAAAA-
1 AAAAAAAGAAAAAG
*
101339860 AAGAAAAGAAAAAG
1 AAAAAAAGAAAAAG
*
101339874 ATAAAAAATAAAAAG
1 A-AAAAAAGAAAAAG
101339889 AAAAAAA
1 AAAAAAA
101339896 ATAGAGAGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
13 11 0.37
14 7 0.23
15 12 0.40
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.04
Consensus pattern (14 bp):
AAAAAAAGAAAAAG
Found at i:101341083 original size:27 final size:27
Alignment explanation
Indices: 101341053--101341169 Score: 164
Period size: 27 Copynumber: 4.3 Consensus size: 27
101341043 TACTGAAATG
* *
101341053 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * *
101341080 CCCTTGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
101341107 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
*
101341134 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAAAATTACCATTTTA
101341161 CCCTCGATT
1 CCCTCGATT
101341170 GTGAAATTAC
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
26 1 0.01
27 79 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:101341115 original size:54 final size:54
Alignment explanation
Indices: 101341053--101341169 Score: 182
Period size: 54 Copynumber: 2.2 Consensus size: 54
101341043 TACTGAAATG
* * * *
101341053 CCCTCGATTTATAGAATTACCATTTTACCCT-TGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCAG-TTTACAAAATTACCGTTTTA
101341107 CCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACCGTTTTA
101341161 CCCTCGATT
1 CCCTCGATT
101341170 GTGAAATTAC
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
54 57 0.98
55 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.38
Consensus pattern (54 bp):
CCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACCGTTTTA
Found at i:101341191 original size:27 final size:27
Alignment explanation
Indices: 101341161--101341270 Score: 100
Period size: 27 Copynumber: 4.1 Consensus size: 27
101341151 TACCGTTTTA
* **
101341161 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCTCGATTGTAAAATTACCAAAATAC
*
101341188 CCCT-G-TTGGATAGAATTACCAAAATAC
1 CCCTCGATT-G-TAAAATTACCAAAATAC
* * *
101341215 CCCTAGTTTGTAAAATTACCGAAATA-
1 CCCTCGATTGTAAAATTACCAAAATAC
*
101341241 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCTCGA-TTGTAAAATTACCAAAATAC
101341269 CC
1 CC
101341271 ATGATTTACA
Statistics
Matches: 67, Mismatches: 10, Indels: 11
0.76 0.11 0.12
Matches are distributed among these distances:
25 2 0.03
26 6 0.09
27 53 0.79
28 4 0.06
29 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (27 bp):
CCCTCGATTGTAAAATTACCAAAATAC
Found at i:101341242 original size:54 final size:54
Alignment explanation
Indices: 101341168--101341298 Score: 140
Period size: 54 Copynumber: 2.4 Consensus size: 54
101341158 TTACCCTCGA
* * ** * *
101341168 TTGTGAAATTACTGAAATACCC-CTGTTGGATAGAATTACCAAAATACCCCT-AGT
1 TTGTAAAATTACAGAAATACCCTCAATTGG-TAAAATTACCAAAATACCCATGA-T
* *
101341222 TTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCATGAT
1 TTGTAAAATTACAGAAATACCCTCAATTGGTAAAATTACCAAAATACCCATGAT
**
101341276 TTACAAAATTACAGAAATACCCT
1 TTGTAAAATTACAGAAATACCCT
101341299 TGACTTTCTA
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
54 60 0.92
55 5 0.08
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (54 bp):
TTGTAAAATTACAGAAATACCCTCAATTGGTAAAATTACCAAAATACCCATGAT
Found at i:101341277 original size:27 final size:27
Alignment explanation
Indices: 101341201--101341311 Score: 102
Period size: 27 Copynumber: 4.1 Consensus size: 27
101341191 TGTTGGATAG
*
101341201 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATA-CCCTGACTTTGTAA
* * *
101341228 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTGACTTTGTAA
**
101341255 AATTACCAAAATACCCATGA-TTTACAA
1 AATTACCAAAATACCC-TGACTTTGTAA
*
101341282 AATTA-CAGAAATACCCTTGACTTTCTAA
1 AATTACCA-AAATACCC-TGACTTTGTAA
101341310 AA
1 AA
101341312 ATTATAGAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.08
27 56 0.79
28 9 0.13
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTGACTTTGTAA
Found at i:101341348 original size:27 final size:27
Alignment explanation
Indices: 101341253--101341360 Score: 87
Period size: 27 Copynumber: 3.9 Consensus size: 27
101341243 CTCAATTTGT
** *
101341253 AAAATTACCAAAATACCCA-TGATTTAC
1 AAAATTACTGAAATA-CCATTGGTTTAC
* * *
101341280 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACTGAAATACCATTG-GTTTAC
101341307 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACT-GAAATACCATTGGTTTAC
*
101341336 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCATTGGTTT
101341361 GTAGATTTAC
Statistics
Matches: 66, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
26 2 0.03
27 38 0.58
28 7 0.11
29 19 0.29
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCATTGGTTTAC
Found at i:101341437 original size:27 final size:27
Alignment explanation
Indices: 101341405--101341456 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
101341395 GACTAAAATA
101341405 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
101341432 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
101341457 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:101342370 original size:24 final size:24
Alignment explanation
Indices: 101342288--101342370 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
101342278 AGGAAGTGCT
* * *
101342288 AAAAGGGCTCTGCCCTAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
101342312 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
101342337 AGAAAGGGCTTTGCCCCAG-TTATT
1 A-AAAGGGCTTTGCCCCAGTTTATC
101342361 AAAAGAGGCT
1 AAAAG-GGCT
101342371 AGGCCTCTAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:101342564 original size:42 final size:42
Alignment explanation
Indices: 101342505--101342638 Score: 252
Period size: 42 Copynumber: 3.2 Consensus size: 42
101342495 TAGTCTCCCC
101342505 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
101342547 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
101342589 AAATGGGCTTGCATACA-TCTATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTC-ATTGACATTACATGTGATATTG
101342631 AAATGGGC
1 AAATGGGC
101342639 CTAAGGGCCA
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
41 2 0.02
42 89 0.98
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:101342697 original size:31 final size:31
Alignment explanation
Indices: 101342662--101342807 Score: 217
Period size: 31 Copynumber: 4.7 Consensus size: 31
101342652 CGTTTACAGT
101342662 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
101342693 AAAGGCTTCGGCTCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
101342724 AAAGG-TTCCGGCCCAGTGATATGATTTGTGA
1 AAAGGCTT-CGGCCCAGTGATATGATTTATGA
*
101342755 AAAGGCTTCGGCCTAGTGATATGATTTATGGA
1 AAAGGCTTCGGCCCAGTGATATGATTTAT-GA
*
101342787 AAA-GCTTCGACCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
101342808 TCAAGACTAA
Statistics
Matches: 105, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
30 7 0.07
31 91 0.87
32 7 0.07
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:101343928 original size:12 final size:12
Alignment explanation
Indices: 101343911--101343976 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
101343901 TTTTTATTCA
*
101343911 TATATTATTCAT
1 TATATTATACAT
**
101343923 TATATTAT-TTT
1 TATATTATACAT
101343934 TATTATTATACAT
1 TA-TATTATACAT
* *
101343947 TTTATTTATAAAT
1 TATA-TTATACAT
*
101343960 TTTATTATACAT
1 TATATTATACAT
101343972 TATAT
1 TATAT
101343977 ATTTTACTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
11 3 0.07
12 27 0.63
13 13 0.30
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.61
Consensus pattern (12 bp):
TATATTATACAT
Found at i:101343956 original size:30 final size:30
Alignment explanation
Indices: 101343893--101343974 Score: 77
Period size: 25 Copynumber: 2.9 Consensus size: 30
101343883 TAAAATAGTA
*
101343893 TATATTATTTTTTATTCATATATTATTCAT
1 TATATTATTTTTTATTCATACATTATTCAT
101343923 TATATTATTTTTATTATT-ATACATT-TT-AT
1 TATATTA-TTTT-TTATTCATACATTATTCAT
**
101343952 T-TA-TAAATTTTATT-ATACATTAT
1 TATATTATTTTTTATTCATACATTAT
101343975 ATATTTTACT
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
25 12 0.26
26 3 0.07
27 2 0.04
28 2 0.04
29 3 0.07
30 9 0.20
31 10 0.22
32 5 0.11
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (30 bp):
TATATTATTTTTTATTCATACATTATTCAT
Found at i:101344186 original size:10 final size:10
Alignment explanation
Indices: 101344107--101344190 Score: 66
Period size: 10 Copynumber: 8.2 Consensus size: 10
101344097 TTATCCTTAT
*
101344107 TTATATAATA
1 TTATATATTA
101344117 GTTATCATATTA
1 -TTAT-ATATTA
101344129 TTATAT-TTCA
1 TTATATATT-A
*
101344139 TTATATTTTA
1 TTATATATTA
101344149 TTTATATATT-
1 -TTATATATTA
*
101344159 TTAT-TACATA
1 TTATATA-TTA
*
101344169 TCATATATTA
1 TTATATATTA
101344179 TTATATATTA
1 TTATATATTA
101344189 TT
1 TT
101344191 CCCTATATTA
Statistics
Matches: 60, Mismatches: 6, Indels: 15
0.74 0.07 0.19
Matches are distributed among these distances:
8 2 0.03
9 7 0.12
10 26 0.43
11 20 0.33
12 5 0.08
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.58
Consensus pattern (10 bp):
TTATATATTA
Found at i:101346127 original size:22 final size:21
Alignment explanation
Indices: 101346097--101346143 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
101346087 TACAAATTAA
101346097 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
101346119 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
101346140 ATCT
1 ATCT
101346144 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:101346149 original size:19 final size:19
Alignment explanation
Indices: 101346114--101346192 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
101346104 AGATTACAAG
101346114 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
101346135 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
101346152 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
101346171 ATCATATCTAAGGTTGCAT
1 ATCATATCTAAGATTGCAT
101346190 ATC
1 ATC
101346193 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 17 0.31
19 29 0.53
20 1 0.02
21 8 0.15
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:101346173 original size:14 final size:15
Alignment explanation
Indices: 101346136--101346173 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
101346126 AGATTGCATA
101346136 TCATATCTAAGATTG
1 TCATATCTAAGATTG
101346151 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
101346168 -CATATC
1 TCATATC
101346174 ATATCTAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:101346201 original size:36 final size:35
Alignment explanation
Indices: 101346115--101346202 Score: 108
Period size: 36 Copynumber: 2.4 Consensus size: 35
101346105 GATTACAAGA
101346115 TCATATCTTCAAGATTGCATATCATATCTAAGATTG
1 TCATATCTT-AAGATTGCATATCATATCTAAGATTG
*
101346151 TATCATATC-TAAGATTGCATATCATATCTAAGGTTG
1 --TCATATCTTAAGATTGCATATCATATCTAAGATTG
101346187 -CATATCCTTAAAGATT
1 TCATAT-CTT-AAGATT
101346203 ATATTTCCAT
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
33 5 0.11
34 1 0.02
35 1 0.02
36 31 0.67
37 1 0.02
38 7 0.15
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (35 bp):
TCATATCTTAAGATTGCATATCATATCTAAGATTG
Found at i:101346988 original size:41 final size:41
Alignment explanation
Indices: 101346938--101347075 Score: 109
Period size: 41 Copynumber: 3.3 Consensus size: 41
101346928 ACTTGTTACT
* *
101346938 CTACCGCTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
* * *** ** * * *
101346979 CTACTGCTTAGGGAGA-TAAGATCTACAAATTTAACCTGTTATC-
1 CTACTGCTTAGGG-GATTAAG-GCGA-GTCTTCGATCTGCT-CCA
*
101347022 CTACTGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
101347063 CTACTGCTTAGGG
1 CTACTGCTTAGGG
101347076 AGATAAGATC
Statistics
Matches: 68, Mismatches: 23, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
40 1 0.01
41 36 0.53
42 6 0.09
43 24 0.35
44 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.30
Consensus pattern (41 bp):
CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
Found at i:101347031 original size:84 final size:84
Alignment explanation
Indices: 101346842--101347367 Score: 720
Period size: 84 Copynumber: 6.4 Consensus size: 84
101346832 CTATGTCTTC
* * *
101346842 AACCTGTTACCCTACTGTTTAAGGGG-TTAAGGCGCATCTTCTTCGATCTGCTCCGCTACTGCTT
1 AACCTGTTACCCTACTGCTT-AGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTT
* *
101346906 A-GG-GATAAGAACTGTAAATTT
62 AGGGAGATAAGATCTGCAAATTT
* * * *
101346927 AACTTGTTACTCTACCGCTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
*
101346992 AGATAAGATCTACAAATTT
66 AGATAAGATCTGCAAATTT
* *
101347011 AACCTGTTATCCTACTGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
101347076 AGATAAGATCTGCAAATTT
66 AGATAAGATCTGCAAATTT
* * * * * *
101347095 AACCTATTATCCTACTACTAAGGGAATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGA
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
101347160 AGATAAGATCTGCAAATTT
66 AGATAAGATCTGCAAATTT
101347179 AACCTGTTACCCTACTGC--------TTAAGG-GA-T-TTCGATCTGCTCCACTACTGCTTAGGG
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
101347233 AGATAAGATCTGCAAATTT
66 AGATAAGATCTGCAAATTT
* * *
101347252 AACCTGTTACCCTACTACTTAAGGGATTAAGGCGAGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
101347317 AGATAAGATCTGCAAATTT
66 AGATAAGATCTGCAAATTT
*
101347336 AACCTGTTACCCTACTGGTTAGGGGATTAAGG
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGG
101347368 TGCTGAATTT
Statistics
Matches: 395, Mismatches: 32, Indels: 29
0.87 0.07 0.06
Matches are distributed among these distances:
73 62 0.16
74 1 0.00
75 2 0.01
76 6 0.02
81 6 0.02
82 27 0.07
83 3 0.01
84 264 0.67
85 24 0.06
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (84 bp):
AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
AGATAAGATCTGCAAATTT
Found at i:101347214 original size:73 final size:73
Alignment explanation
Indices: 101347133--101347363 Score: 327
Period size: 73 Copynumber: 3.0 Consensus size: 73
101347123 AAGGCGAGTC
*
101347133 TTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCT
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCT
101347198 TAAGGGAT
66 TAAGGGAT
*
101347206 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTACT
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCT
101347271 TAAGGGAT
66 TAAGGGAT
101347279 TAAGGCGAGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
1 T--------TC---GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
* *
101347344 ACCCTACTGGTTAGGGGAT
55 ACCCTACTGCTTAAGGGAT
101347363 T
1 T
101347364 AAGGTGCTGA
Statistics
Matches: 142, Mismatches: 5, Indels: 11
0.90 0.03 0.07
Matches are distributed among these distances:
73 72 0.51
81 2 0.01
84 68 0.48
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (73 bp):
TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCT
TAAGGGAT
Found at i:101347268 original size:157 final size:156
Alignment explanation
Indices: 101346883--101347363 Score: 669
Period size: 157 Copynumber: 3.0 Consensus size: 156
101346873 GCGCATCTTC
* * * * * **
101346883 TTCGATCTGCTCCGCTACTGCTTA-GG-GATAAGAACTGTAAATTTAACTTGTTACTCTACCGCT
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTAC-
* * *
101346946 TAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAATTT
65 TAAGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTT
*
101347011 AACCTGTTATCCTACTGCTTAGGGGATTAAGGTGAGT
130 AACCTGTTACCCTACTGC--------TTAAGG-GA-T
* *
101347048 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTATTATCCTACTAC
1 -TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTAC
*
101347113 TAAGGGAATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGCAAATT
65 TAAGGG-ATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATT
101347178 TAACCTGTTACCCTACTGCTTAAGGGAT
129 TAACCTGTTACCCTACTGCTTAAGGGAT
101347206 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTACT
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTAC-
*
101347271 TAAGGGATTAAGGCGAGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTT
65 TAAGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTT
* *
101347336 AACCTGTTACCCTACTGGTTAGGGGAT
130 AACCTGTTACCCTACTGCTTAAGGGAT
101347363 T
1 T
101347364 AAGGTGCTGA
Statistics
Matches: 291, Mismatches: 20, Indels: 17
0.89 0.06 0.05
Matches are distributed among these distances:
157 145 0.50
158 7 0.02
159 2 0.01
160 6 0.02
166 23 0.08
167 7 0.02
168 101 0.35
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (156 bp):
TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTACT
AAGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTA
ACCTGTTACCCTACTGCTTAAGGGAT
Found at i:101347352 original size:43 final size:43
Alignment explanation
Indices: 101347220--101347359 Score: 137
Period size: 43 Copynumber: 3.3 Consensus size: 43
101347210 ATCTGCTCCA
101347220 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
* * * ** * * *
101347263 CTACTACTTAAGGGA-TTAAG-GC-G-AGTCTTTGATCTGCT-CC
1 CTACTGCTT-AGGGAGATAAGATCTGCA-AATTTAACCTGTTACC
101347303 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
*
101347347 CTACTGGTTAGGG
1 CTACTGCTTAGGG
101347360 GATTAAGGTG
Statistics
Matches: 72, Mismatches: 17, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
40 8 0.11
41 21 0.29
42 2 0.03
43 33 0.46
44 8 0.11
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (43 bp):
CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
Found at i:101347367 original size:241 final size:247
Alignment explanation
Indices: 101346842--101347367 Score: 719
Period size: 241 Copynumber: 2.1 Consensus size: 247
101346832 CTATGTCTTC
* * *
101346842 AACCTGTTACCCTACTGTTTAAGGGG-TTAAGGCGCATCTTCTTCGATCTGCTCCGCTACTGCTT
1 AACCTGTTACCCTACTGCTT-AGGGGATTAAGGCGCA-CGTCTTCGATCTGCTCCACTACTGCTT
* * * *
101346906 AGGGATAAGAACTGTAAATTTAACTTGTTACTCTACCGCTTAGGGGATTAAGGCGGGTCTTCGAT
64 AGGGATAAGAACTGCAAATTTAACCTGTTACCCTA-C-CTT---GGATTAAGGCGGATCTTCGAT
* * *
101346971 CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTATCCTACTGCTTAGGGG
124 CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTACTTAAGGG
*
101347036 ATTAAGGTGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTT
189 ATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTT
* * * * *
101347095 AACCTATTATCCTACTACTAAGGGAATTAAGGCG-A-GTCTTCGATCTGCTCCACTACTGCTTAG
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCACGTCTTCGATCTGCTCCACTACTGCTTAG
* *
101347158 GAAGATAAGATCTGCAAATTTAACCTGTTACCCTA-C-T-GCTTAA-G-GGAT-TTCGATCTGCT
66 G--GATAAGAACTGCAAATTTAACCTGTTACCCTACCTTGGATTAAGGCGGATCTTCGATCTGCT
*
101347217 CCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTACTTAAGGGATTAA
129 CCACTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTACTTAAGGGATTAA
*
101347282 GGCGAGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTT
194 GGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTT
*
101347336 AACCTGTTACCCTACTGGTTAGGGGATTAAGG
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGG
101347368 TGCTGAATTT
Statistics
Matches: 244, Mismatches: 26, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
241 150 0.61
242 3 0.01
243 1 0.00
244 5 0.02
248 1 0.00
249 1 0.00
250 27 0.11
252 33 0.14
253 23 0.09
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (247 bp):
AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCACGTCTTCGATCTGCTCCACTACTGCTTAG
GGATAAGAACTGCAAATTTAACCTGTTACCCTACCTTGGATTAAGGCGGATCTTCGATCTGCTCC
ACTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTACTTAAGGGATTAAGG
CGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTT
Found at i:101348335 original size:11 final size:10
Alignment explanation
Indices: 101348315--101348350 Score: 54
Period size: 11 Copynumber: 3.4 Consensus size: 10
101348305 GGCTTCTCTA
101348315 TTTTTTTCTT
1 TTTTTTTCTT
101348325 TTTTTTCTCTT
1 TTTTTT-TCTT
101348336 TTTCTTTTCTT
1 TTT-TTTTCTT
101348347 TTTT
1 TTTT
101348351 CCTTTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 7 0.29
11 14 0.58
12 3 0.12
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:101348360 original size:22 final size:22
Alignment explanation
Indices: 101348308--101348350 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
101348298 TCACCTTGGC
*
101348308 TTCTCTATTT-TTTTCTTTTTT
1 TTCTCTTTTTCTTTTCTTTTTT
101348329 TTCTCTTTTTCTTTTCTTTTTT
1 TTCTCTTTTTCTTTTCTTTTTT
101348351 CCTTTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.81
Consensus pattern (22 bp):
TTCTCTTTTTCTTTTCTTTTTT
Found at i:101348858 original size:84 final size:84
Alignment explanation
Indices: 101348705--101349475 Score: 1052
Period size: 84 Copynumber: 9.3 Consensus size: 84
101348695 ATCATCTTTG
* *
101348705 ACCCTACTGCTTAGGGG-TTAAGGTGCATCGTCTTCGATCTGCTCCGCTACTGCTT-AGG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAAGGAGATA
101348767 AGATCTGCAAATTTAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
* * * * * *
101348789 ACCCTACTGCTTAGAGGATTAAGACGGGTTTTCGATCTGCTCTATTACTGCTTAAGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGA
101348854 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * * * *
101348873 ACCCTACTACTTAAGGGATTAAGGCGAGTCGTCGTCGATCTGCTCCGCTACCG-TTTAGG-G---
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAAGGAGATA
*
101348933 AGA--TGC-----GAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
* * *
101348948 ACCCTACTACTTAGGGGATTAAGGCAAGTCTTCGATCTGCTCCACTACTACTTAAGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGA
*
101349013 TCTGCAAATTTAACCTATT
66 TCTGCAAATTTAACCTGTT
* * *
101349032 ACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGA
101349097 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * * * *
101349116 ACCCTACTACTTAAGGGATTAAGGTGAGTCTTCGATCTACTCCACTACTGTTTAAGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGA
101349181 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* *
101349200 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTAGTGCAT-AGGAAGATAAG
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAAGG-AGATAAG
101349264 ATCTGCAAATTTAACCTGTT
65 ATCTGCAAATTTAACCTGTT
* *
101349284 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGA
*
101349349 TCTGCAAATTTAACCTATT
66 TCTGCAAATTTAACCTGTT
* * *
101349368 ACCCTACTGCTTAAGGGATTAAGGCGAGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGA
101349433 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
101349452 ACCCTACTGCTTAGGGGATAAAGG
1 ACCCTACTGCTTAGGGGATTAAGG
101349476 GGCTGAATTT
Statistics
Matches: 606, Mismatches: 61, Indels: 40
0.86 0.09 0.06
Matches are distributed among these distances:
72 16 0.03
73 5 0.01
74 2 0.00
75 36 0.06
77 3 0.00
79 3 0.00
80 3 0.00
82 25 0.04
83 6 0.01
84 477 0.79
85 10 0.02
86 5 0.01
87 15 0.02
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (84 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGA
TCTGCAAATTTAACCTGTT
Found at i:101349208 original size:43 final size:43
Alignment explanation
Indices: 101348992--101349472 Score: 162
Period size: 43 Copynumber: 11.4 Consensus size: 43
101348982 ATCTGCTCCA
* *
101348992 CTACTACTTAAGGAGATAAGATCTGCAAATTTAACCTATTACC
1 CTACTGCTTAAGGAGATAAGATCTGCAAATTTAACCTGTTACC
* * * * * * *
101349035 CTACCGCTT-AGGGGATTAAG----GCGAGTCTTCGATCTGCT-CC
1 CTACTGCTTAAGGAGA-TAAGATCTGCAAAT-TT-AACCTGTTACC
*
101349075 GCTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAAGGAGATAAGATCTGCAAATTTAACCTGTTACC
* * * * * **
101349119 CTACTACTTAAGG-GATTAAG--GTG--AGTCTTCGATCTACT-CC
1 CTACTGCTTAAGGAGA-TAAGATCTGCAAAT-TT-AACCTGTTACC
*
101349159 ACTACTGTTTAAGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAAGGAGATAAGATCTGCAAATTTAACCTGTTACC
* * * * * *
101349203 CTACTGCTT-AGGGGATTAAG----GCGAGTCTTCGATCTGCT-CC
1 CTACTGCTTAAGGAGA-TAAGATCTGCAAAT-TT-AACCTGTTACC
* *
101349243 ACTAGTGCAT-AGGAAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAAGG-AGATAAGATCTGCAAATTTAACCTGTTACC
* * * * ** *
101349287 CTACTGCTT-AGGGGATTAAG----GCGAGTCTTCGATTTGCT-CC
1 CTACTGCTTAAGGAGA-TAAGATCTGCAAAT-TT-AACCTGTTACC
* *
101349327 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTATTACC
1 -CTACTGCTTAAGGAGATAAGATCTGCAAATTTAACCTGTTACC
* * * * **
101349371 CTACTGCTTAAGG-GATTAAG----GCGAGTCTTCGATCTACT-CC
1 CTACTGCTTAAGGAGA-TAAGATCTGCAAAT-TT-AACCTGTTACC
*
101349411 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAAGGAGATAAGATCTGCAAATTTAACCTGTTACC
*
101349455 CTACTGCTT-AGGGGATAA
1 CTACTGCTTAAGGAGATAA
101349473 AGGGGCTGAA
Statistics
Matches: 307, Mismatches: 81, Indels: 101
0.63 0.17 0.21
Matches are distributed among these distances:
39 18 0.06
40 20 0.07
41 94 0.31
42 37 0.12
43 100 0.33
44 20 0.07
45 18 0.06
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (43 bp):
CTACTGCTTAAGGAGATAAGATCTGCAAATTTAACCTGTTACC
Found at i:101349416 original size:41 final size:40
Alignment explanation
Indices: 101349287--101349425 Score: 113
Period size: 41 Copynumber: 3.4 Consensus size: 40
101349277 ACCTGTTACC
* *
101349287 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATTTGCTCCA
1 CTACTGCTTA-GGGATTAAGGCGAGTCTTCGATCTACTCCA
* * * * * *
101349328 CTACTGCTTAGGGAGATAAGATCTGCAAAT-TT-AACCTATTACC-
1 CTACTGCTTAGGGA-TTAAG----GCGAGTCTTCGATCTACT-CCA
101349371 CTACTGCTTAAGGGATTAAGGCGAGTCTTCGATCTACTCCA
1 CTACTGCTT-AGGGATTAAGGCGAGTCTTCGATCTACTCCA
101349412 CTACTGCTTAGGGA
1 CTACTGCTTAGGGA
101349426 GATAAGATCT
Statistics
Matches: 74, Mismatches: 14, Indels: 21
0.68 0.13 0.19
Matches are distributed among these distances:
39 4 0.05
40 13 0.18
41 28 0.38
43 16 0.22
44 9 0.12
45 4 0.05
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (40 bp):
CTACTGCTTAGGGATTAAGGCGAGTCTTCGATCTACTCCA
Found at i:101350440 original size:20 final size:19
Alignment explanation
Indices: 101350417--101350470 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
101350407 TCACCTTGGC
101350417 TTCTCTATTTTTTTCTTTTT
1 TTCTCT-TTTTTTTCTTTTT
101350437 TTCTCTTTTTCTTT-TCTTTT
1 TTCTCTTTTT-TTTCT-TTTT
101350457 TTC-CTTTTTTTTCT
1 TTCTCTTTTTTTTCT
101350471 GAACTTATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
18 3 0.10
19 12 0.39
20 16 0.52
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.80
Consensus pattern (19 bp):
TTCTCTTTTTTTTCTTTTT
Found at i:101351220 original size:84 final size:84
Alignment explanation
Indices: 101350888--101351637 Score: 1147
Period size: 84 Copynumber: 9.0 Consensus size: 84
101350878 AAGGTGCATC
* *
101350888 GTCTTCGATCTGCTCCGCTACTGCTTA-GG-GATAAGATCTGTAAATTTAACCTGTTACCCTACT
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
* * *
101350951 TCTTA-GGGATTAAGACGG
66 GCTTAGGGGATTAAGGCGA
* *
101350969 GTTTTCGATCTCCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
* * **
101351034 ACCTAGGGGATTAAGATGA
66 GCTTAGGGGATTAAGGCGA
* *
101351053 GTCGTCGTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGC-----GAACCTGTTACCCT
1 GTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCT
*
101351113 ACTACTTAGGGGATTAAGGCGA
63 ACTGCTTAGGGGATTAAGGCGA
* * *
101351135 GTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACC
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
*
101351200 GCTTAGAGGATTAAGGCGA
66 GCTTAGGGGATTAAGGCGA
*
101351219 GTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
*
101351284 GCTTAAGGGATTAAGGCGA
66 GCTTAGGGGATTAAGGCGA
* * *
101351303 GTCTTCGATCTACTCCCCTACTGCTTAAGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
*
101351368 GCTTAAGGGATTAAGGCGA
66 GCTTAGGGGATTAAGGCGA
* *
101351387 GTCTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGTAAATTTAACCTGTTACCCTACT
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
101351452 GCTTAGGGGATTAAGGCGA
66 GCTTAGGGGATTAAGGCGA
* * *
101351471 GTCTTCGATCTACTCCATTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACT
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
*
101351536 GCTTATGGGATTAAGGCGA
66 GCTTAGGGGATTAAGGCGA
101351555 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
101351620 GCTTAGGGGATTAAGGCG
66 GCTTAGGGGATTAAGGCG
101351638 CTGAATTTTG
Statistics
Matches: 611, Mismatches: 47, Indels: 19
0.90 0.07 0.03
Matches are distributed among these distances:
79 36 0.06
81 25 0.04
82 37 0.06
83 36 0.06
84 439 0.72
85 1 0.00
87 37 0.06
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (84 bp):
GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
GCTTAGGGGATTAAGGCGA
Found at i:101351580 original size:41 final size:39
Alignment explanation
Indices: 101351109--101351585 Score: 160
Period size: 41 Copynumber: 11.4 Consensus size: 39
101351099 GAACCTGTTA
* *
101351109 CCCTACTACTTAGGGGATTAAGGCGAGTCTTTGATCTGCT
1 CCCTACTGCTTA-GGGATTAAGGCGAGTCTTCGATCTGCT
* * * *** ** * *
101351149 CCACTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTT
1 CC-CTACTGCTTAGGGA-TTAAG-GCGA-GTCTTCGATCTGCT
*
101351192 ACCCTACCGCTTAGAGGATTAAGGCGAGTCTTCGATCTGCT
1 -CCCTACTGCTTAG-GGATTAAGGCGAGTCTTCGATCTGCT
* * * * * *
101351233 CCGCTACTGCTTAGGGAGATAAGATCTGCAAAT-TT-AACCTGTT
1 CC-CTACTGCTTAGGGA-TTAAG----GCGAGTCTTCGATCTGCT
*
101351276 ACCCTACTGCTTAAGGGATTAAGGCGAGTCTTCGATCTACT
1 -CCCTACTGCTT-AGGGATTAAGGCGAGTCTTCGATCTGCT
* * * * *
101351317 CCCCTACTGCTTAAGGAGA-TAAGATCTGCAAAT-TT-AACCTGTT
1 -CCCTACTGCTT-AGG-GATTAAG----GCGAGTCTTCGATCTGCT
101351360 ACCCTACTGCTTAAGGGATTAAGGCGAGTCTTCGATCTGCT
1 -CCCTACTGCTT-AGGGATTAAGGCGAGTCTTCGATCTGCT
* * * * *
101351401 CCACTACTGCTTAGGAAGA-TAAGATCTGTAAAT-TT-AACCTGTT
1 CC-CTACTGCTTAGG--GATTAAG-GC-G--AGTCTTCGATCTGCT
*
101351444 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTACT
1 -CCCTACTGCTTA-GGGATTAAGGCGAGTCTTCGATCTGCT
* * * * *** ** * *
101351485 CCATTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTT
1 CC-CTACTGCTTAGGGA-TTAAG-GCGA-GTCTTCGATCTGCT
101351528 ACCCTACTGCTTATGGGATTAAGGCGAGTCTTCGATCTGCT
1 -CCCTACTGCTTA-GGGATTAAGGCGAGTCTTCGATCTGCT
101351569 CCACTACTGCTTAGGGA
1 CC-CTACTGCTTAGGGA
101351586 GATAAGATCT
Statistics
Matches: 312, Mismatches: 82, Indels: 86
0.65 0.17 0.18
Matches are distributed among these distances:
39 10 0.03
40 34 0.11
41 110 0.35
42 18 0.06
43 102 0.33
44 28 0.09
45 10 0.03
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (39 bp):
CCCTACTGCTTAGGGATTAAGGCGAGTCTTCGATCTGCT
Found at i:101355133 original size:40 final size:40
Alignment explanation
Indices: 101355063--101355160 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
101355053 CCATCTCCGT
* * * * *
101355063 CCAACCCAACACACC-A-TGTGGGGATGAAATCTACCTAC
1 CCAACCCTACACACCAAGTATGGGGATAAAATCAACCCAC
* *
101355101 CCAGCCCTACACACCAAGTATGGGGATAAAATCAACCCAT
1 CCAACCCTACACACCAAGTATGGGGATAAAATCAACCCAC
*
101355141 CCAACCCTACACACCCAGTA
1 CCAACCCTACACACCAAGTA
101355161 GTACCGTATA
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
38 13 0.27
39 1 0.02
40 35 0.71
ACGTcount: A:0.36, C:0.37, G:0.13, T:0.14
Consensus pattern (40 bp):
CCAACCCTACACACCAAGTATGGGGATAAAATCAACCCAC
Found at i:101361496 original size:18 final size:17
Alignment explanation
Indices: 101361473--101361508 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
101361463 GTCATTCATT
101361473 TATTCAGTAACAGTCAAA
1 TATTCAGTAACAGT-AAA
*
101361491 TATTCAGTAGCAGTAAA
1 TATTCAGTAACAGTAAA
101361508 T
1 T
101361509 TTTTCAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.31
Consensus pattern (17 bp):
TATTCAGTAACAGTAAA
Found at i:101367114 original size:23 final size:23
Alignment explanation
Indices: 101367083--101367126 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
101367073 ATTGAGTATT
* *
101367083 AAAAGTATATATATAATATAGAC
1 AAAAATATATACATAATATAGAC
*
101367106 AAAAATATATGCATAATATAG
1 AAAAATATATACATAATATAG
101367127 TATGGAAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (23 bp):
AAAAATATATACATAATATAGAC
Found at i:101367195 original size:25 final size:22
Alignment explanation
Indices: 101367151--101367510 Score: 94
Period size: 25 Copynumber: 15.6 Consensus size: 22
101367141 ACATGGGATA
* *
101367151 ATATAAAAATGTATGAATAATGT
1 ATATAAAAATATAT-AATAATAT
101367174 GATATTAAAAATATATACATAATAT
1 -ATA-TAAAAATATATA-ATAATAT
101367199 ATATAAAAA-A-AT-ATAATAT
1 ATATAAAAATATATAATAATAT
101367218 -TA-AAAATATATATACATAATAT
1 ATATAAAA-ATATATA-ATAATAT
101367240 ATAT---AATATATACATAATAT
1 ATATAAAAATATATA-ATAATAT
*
101367260 AGTAT-TAAATATATACATAACATAT
1 A-TATAAAAATATATA-AT-A-ATAT
*
101367285 ACATATCAAAAATA-ATAATGATAT
1 --ATAT-AAAAATATATAATAATAT
* * *
101367309 TTAGGAACAATACTATTAATAATACT
1 ATA-TAAAAATA-TA-TAATAATA-T
* * *
101367335 ACAT--AAATATGTACAT-ACAT
1 ATATAAAAATATATA-ATAATAT
* *
101367355 AT-TAAAAATAAATACATAACA-
1 ATATAAAAATATATA-ATAATAT
* * *
101367376 ATATTAATAGTATGTACATAATAT
1 ATA-TAAAAATATATA-ATAATAT
*
101367400 AGTGTTAAAAATATATACATAATAT
1 A-T-ATAAAAATATATA-ATAATAT
101367425 AGTTATTAAAAAATATATACATAATAT
1 A--TA-T-AAAAATATATA-ATAATAT
*
101367452 A-AT-AAAATGTATGAATAATAT
1 ATATAAAAATATAT-AATAATAT
101367473 GATATTTTAAAAA-ACTATACAT-A-AT
1 -ATA---TAAAAATA-TATA-ATAATAT
101367498 ATATAAAAATATA
1 ATATAAAAATATA
101367511 ATATTTAAAA
Statistics
Matches: 261, Mismatches: 30, Indels: 93
0.68 0.08 0.24
Matches are distributed among these distances:
17 4 0.02
18 3 0.01
19 9 0.03
20 20 0.08
21 45 0.17
22 25 0.10
23 39 0.15
24 18 0.07
25 48 0.18
26 12 0.05
27 33 0.13
28 5 0.02
ACGTcount: A:0.55, C:0.06, G:0.05, T:0.34
Consensus pattern (22 bp):
ATATAAAAATATATAATAATAT
Found at i:101367202 original size:13 final size:13
Alignment explanation
Indices: 101367180--101367244 Score: 62
Period size: 13 Copynumber: 4.9 Consensus size: 13
101367170 ATGTGATATT
101367180 AAAA-ATATATAC
1 AAAATATATATAC
* *
101367192 ATAATATATATAAA
1 AAAATATATAT-AC
101367206 AAAATATAATATTA-
1 AAAATAT-ATA-TAC
101367220 AAAATATATATAC
1 AAAATATATATAC
*
101367233 ATAATATATATA
1 AAAATATATATA
101367245 ATATATACAT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
12 5 0.11
13 20 0.45
14 14 0.32
15 4 0.09
16 1 0.02
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (13 bp):
AAAATATATATAC
Found at i:101367239 original size:11 final size:11
Alignment explanation
Indices: 101367225--101367289 Score: 73
Period size: 11 Copynumber: 6.0 Consensus size: 11
101367215 TATTAAAAAT
101367225 ATATATACATA
1 ATATATACATA
101367236 ATATAT--ATA
1 ATATATACATA
101367245 ATATATACATA
1 ATATATACATA
*
101367256 ATATAGTA-TTAA
1 ATATA-TACAT-A
101367268 ATATATACATA
1 ATATATACATA
*
101367279 ACATATACATA
1 ATATATACATA
101367290 TCAAAAATAA
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
9 9 0.20
11 28 0.61
12 9 0.20
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.37
Consensus pattern (11 bp):
ATATATACATA
Found at i:101367393 original size:23 final size:22
Alignment explanation
Indices: 101367339--101367421 Score: 69
Period size: 23 Copynumber: 3.6 Consensus size: 22
101367329 AATACTACAT
101367339 AAATATGTACAT-ACATATTAA
1 AAATATGTACATAACATATTAA
**
101367360 AAATAAATACATAACAATATTAA
1 AAATATGTACATAAC-ATATTAA
* * *
101367383 TAGTATGTACATAATATAGTGTTAA
1 AAATATGTACATAACATA---TTAA
*
101367408 AAATATATACATAA
1 AAATATGTACATAA
101367422 TATAGTTATT
Statistics
Matches: 47, Mismatches: 10, Indels: 6
0.75 0.16 0.10
Matches are distributed among these distances:
21 10 0.21
22 5 0.11
23 17 0.36
25 15 0.32
ACGTcount: A:0.54, C:0.07, G:0.06, T:0.33
Consensus pattern (22 bp):
AAATATGTACATAACATATTAA
Found at i:101367441 original size:27 final size:25
Alignment explanation
Indices: 101367354--101367452 Score: 112
Period size: 25 Copynumber: 4.0 Consensus size: 25
101367344 TGTACATACA
* *
101367354 TATTAAAAATAAATACATAACA-A-
1 TATTAAAAATATATACATAATATAG
* * *
101367377 TATTAATAGTATGTACATAATATAG
1 TATTAAAAATATATACATAATATAG
*
101367402 TGTTAAAAATATATACATAATATAG
1 TATTAAAAATATATACATAATATAG
101367427 TTATTAAAAAATATATACATAATATA
1 -TATT-AAAAATATATACATAATATA
101367453 ATAAAATGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
23 17 0.27
24 1 0.02
25 21 0.34
26 3 0.05
27 20 0.32
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (25 bp):
TATTAAAAATATATACATAATATAG
Found at i:101367459 original size:48 final size:46
Alignment explanation
Indices: 101367407--101367513 Score: 121
Period size: 48 Copynumber: 2.3 Consensus size: 46
101367397 TATAGTGTTA
101367407 AAAATATATACATAATAT-AGT-TATTAAAAAATATATACATAATATAAT
1 AAAATATATA-ATAATATGA-TATATTAAAAAA-ATATACATAATAT-AT
* * *
101367455 AAAATGTATGAATAATATGATATTTTAAAAAACTATACATAATATAT
1 AAAATATAT-AATAATATGATATATTAAAAAAATATACATAATATAT
101367502 AAAA-ATATAATA
1 AAAATATATAATA
101367514 TTTAAAAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
45 4 0.08
46 3 0.06
47 6 0.12
48 28 0.54
49 11 0.21
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (46 bp):
AAAATATATAATAATATGATATATTAAAAAAATATACATAATATAT
Found at i:101367464 original size:75 final size:74
Alignment explanation
Indices: 101367354--101367500 Score: 167
Period size: 75 Copynumber: 2.0 Consensus size: 74
101367344 TGTACATACA
* * *
101367354 TATTAAAAATAAATACATAACAATATTAATAGTATGTACATAATAT-A-GTGTTAAAAATA-TAT
1 TATTAAAAATAAATACATAACAATAATAAAAGTATG-A-ATAATATGATATGTTAAAAA-ACTAT
101367416 ACATAATATAGT
63 ACATAATATAGT
* * *
101367428 TATTAAAAAATATATACATAA-TATAATAAAATGTATGAATAATATGATATTTTAAAAAACTATA
1 TATT-AAAAATAAATACATAACAATAATAAAA-GTATGAATAATATGATATGTTAAAAAACTATA
101367492 CATAATATA
64 CATAATATA
101367501 TAAAAATATA
Statistics
Matches: 62, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
73 7 0.11
74 14 0.23
75 41 0.66
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.35
Consensus pattern (74 bp):
TATTAAAAATAAATACATAACAATAATAAAAGTATGAATAATATGATATGTTAAAAAACTATACA
TAATATAGT
Found at i:101367513 original size:15 final size:15
Alignment explanation
Indices: 101367493--101367549 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
101367483 AAAACTATAC
101367493 ATAATATATAAAAAT
1 ATAATATATAAAAAT
* *
101367508 ATAATATTTAAAAAA
1 ATAATATATAAAAAT
*
101367523 AT-ATACATAATATAAT
1 ATAATATATAA-A-AAT
101367539 ATTAATATATA
1 A-TAATATATA
101367550 TGCGTAATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
14 6 0.19
15 16 0.50
16 3 0.09
17 1 0.03
18 6 0.19
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (15 bp):
ATAATATATAAAAAT
Found at i:101367546 original size:37 final size:37
Alignment explanation
Indices: 101367465--101367547 Score: 114
Period size: 36 Copynumber: 2.2 Consensus size: 37
101367455 AAAATGTATG
* *
101367465 AATAATATGATATTTTAAAAAACTATACATAATATAT
1 AATAATATAATATTTTAAAAAAATATACATAATATAT
*
101367502 AAAAATATAATA-TTTAAAAAAATATACATAATATAAT
1 AATAATATAATATTTTAAAAAAATATACATAATAT-AT
*
101367539 ATTAATATA
1 AATAATATA
101367548 TATGCGTAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
36 21 0.52
37 19 0.47
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (37 bp):
AATAATATAATATTTTAAAAAAATATACATAATATAT
Found at i:101367722 original size:21 final size:21
Alignment explanation
Indices: 101367682--101367724 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
101367672 AAGTAAAAAT
* **
101367682 AATAATAATAAAATGCTAATA
1 AATAAAAATAAAATAATAATA
101367703 AATAAAAATAAAATAATAATA
1 AATAAAAATAAAATAATAATA
101367724 A
1 A
101367725 CAGTAATAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (21 bp):
AATAAAAATAAAATAATAATA
Found at i:101367732 original size:30 final size:29
Alignment explanation
Indices: 101367665--101367734 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 29
101367655 TTATGTATAT
* *
101367665 AAGTATTAAGTAAAAATAATAATAATAAA
1 AAGTAATAAATAAAAATAATAATAATAAA
*
101367694 ATGCTAATAAATAAAAATAA-AATAATAATA
1 AAG-TAATAAATAAAAATAATAATAATAA-A
101367724 ACAGTAATAAA
1 A-AGTAATAAA
101367735 ATATAATAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
29 10 0.29
30 23 0.68
31 1 0.03
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.26
Consensus pattern (29 bp):
AAGTAATAAATAAAAATAATAATAATAAA
Found at i:101369393 original size:83 final size:85
Alignment explanation
Indices: 101369284--101369546 Score: 343
Period size: 83 Copynumber: 3.0 Consensus size: 85
101369274 TTCTTTTTTG
101369284 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
101369349 GATTTTTG-AAACATAAA-A
66 GATTTTTGAAAACAGAAATA
* * * *
101369367 AAAAATAGAAATTGAAAATACCTCAGCGTATCCTGAGGCTCAACTCACCTCTCGCAATATAAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
101369432 GA-TTTTGACAAACAGAAATTG
66 GATTTTTGA-AAACAGAAA-TA
** * *
101369453 AAAAACAGAAATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTTTCACAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
101369518 TTGATTTTTTTGATAAACAGAAATT
64 TTGA--TTTTTGA-AAACAGAAATA
101369543 AAAA
1 AAAA
101369547 TTACCTCAGC
Statistics
Matches: 155, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
82 5 0.03
83 63 0.41
84 8 0.05
86 26 0.17
88 33 0.21
90 5 0.03
91 15 0.10
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.25
Consensus pattern (85 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAACAGAAATA
Found at i:101369458 original size:14 final size:14
Alignment explanation
Indices: 101369436--101369470 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
101369426 TAAGTTGATT
*
101369436 TTGACAAACAGAAA
1 TTGAAAAACAGAAA
101369450 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
101369464 TTGAAAA
1 TTGAAAA
101369471 TACCTCAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.14, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:101369588 original size:75 final size:75
Alignment explanation
Indices: 101369450--101369905 Score: 666
Period size: 75 Copynumber: 6.0 Consensus size: 75
101369440 CAAACAGAAA
* * * * *
101369450 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGC-CGAGGCTCAACTCACCTTTCACAATA
1 TTGAAAGACAGAAATTGAAAATACCTCAGC--GTG-TCTTGAGGCTCAACTCACCTCTCGCAATA
101369514 TGAGTTGATTTTT
63 TGAGTTGATTTTT
101369527 TTGATAA-ACAGAAATT-AAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGA-AAGACAGAAATTGAAAA-TACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
*
101369590 AAGTTGATTTTT
64 GAGTTGATTTTT
* * *
101369602 TTGAAAGATAGAAGTTGAAAATTACCTCAGTGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAGACAGAAATTGAAAA-TACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
101369667 AGTTGATTTTT
65 AGTTGATTTTT
* *
101369678 TTGAAAGAGAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
101369743 GTTGATTTTTTT
66 GTTGA--TTTTT
* *
101369755 TTTAAAGACAGAAATTGAAAATTACCTTAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAGACAGAAATTGAAAA-TACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
101369820 AGTTGATTTTT
65 AGTTGATTTTT
* * *
101369831 TGGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
101369896 GTTGATTTTT
66 GTTGATTTTT
101369906 GAAACAGAAA
Statistics
Matches: 349, Mismatches: 22, Indels: 18
0.90 0.06 0.05
Matches are distributed among these distances:
74 3 0.01
75 147 0.42
76 104 0.30
77 46 0.13
78 49 0.14
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (75 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:101369821 original size:153 final size:152
Alignment explanation
Indices: 101369258--101369905 Score: 766
Period size: 153 Copynumber: 4.1 Consensus size: 152
101369248 ATGACCTATT
*
101369258 GCAATATGAGCTTGATTTCTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGC
1 GCAATATGAG-TTGATTT-TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTCGAGGC
** * *
101369323 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAAAAAAAATAGAAATTGAAAATAC
64 TCAACTCACCTCTCGCAATATGAGTTGATTTTT------T--TGAAAGACAGAAATTGAAAATAC
* * *
101369388 CTCAGCGTATCCTGAGGCTCAACTCACCTCTC
121 CTCAACGTGTCTTGAGGCTCAACTCACCTCTC
* ***
101369420 GCAATATAAGTTGATTTTGACAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTG
1 GCAATATGAGTTGATTTT---------TTTTTGAAAAACAGAAATTGAAAATACCTCAGC--GTG
* * *
101369485 AGC-CGAGGCTCAACTCACCTTTCACAATATGAGTTGATTTTTTTGATAA-ACAGAAATT-AAAA
55 -TCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAGACAGAAATTGAAAA
*
101369547 TTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTC
118 -TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
* * * * * *
101369583 GCAATATAAGTTGA--TTTTTTTGAAAGATAGAAGTTGAAAATTACCTCAGTGTGTCTTGAGGCT
1 GCAATATGAGTTGATTTTTTTTTGAAAAACAGAAATTGAAAA-TACCTCAGCGTGTCTCGAGGCT
*
101369646 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGAGAGAAATTGAAAATACCTCAACGTG
65 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTG
101369711 TCTTGAGGCTCAACTCACCTCTC
130 TCTTGAGGCTCAACTCACCTCTC
* * * *
101369734 GCAATATGAGTTGATTTTTTTTTTAAAGACAGAAATTGAAAATTACCTTAGCGTGTCTTGAGGCT
1 GCAATATGAGTTGATTTTTTTTTGAAAAACAGAAATTGAAAA-TACCTCAGCGTGTCTCGAGGCT
*
101369799 CAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAGACAGAAATTGAAAATACCTCAACGTG
65 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTG
*
101369864 TCTTGAGGCTCAACTCACCTCTT
130 TCTTGAGGCTCAACTCACCTCTC
101369887 GCAATATGAGTTGATTTTT
1 GCAATATGAGTTGATTTTT
101369906 GAAACAGAAA
Statistics
Matches: 432, Mismatches: 34, Indels: 49
0.84 0.07 0.10
Matches are distributed among these distances:
150 3 0.01
151 98 0.23
152 22 0.05
153 156 0.36
160 1 0.00
161 9 0.02
162 13 0.03
163 56 0.13
164 2 0.00
165 1 0.00
169 30 0.07
171 40 0.09
172 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (152 bp):
GCAATATGAGTTGATTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTCGAGGCTC
AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGT
CTTGAGGCTCAACTCACCTCTC
Found at i:101376696 original size:45 final size:45
Alignment explanation
Indices: 101376645--101376734 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
101376635 TTCATTTTTG
* * *
101376645 GGTTAGTTTTGAGTAGGCATGGTATTTGGTGGGAACATGGCAAAT
1 GGTTAGTTTTAAGCAAGCATGGTATTTGGTGGGAACATGGCAAAT
*
101376690 GGTTAGTTTTAAGCAAGCATGGTGTTTGGTGGGAACATGGCAAAT
1 GGTTAGTTTTAAGCAAGCATGGTATTTGGTGGGAACATGGCAAAT
101376735 AGTCTTTGGT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.08, G:0.34, T:0.32
Consensus pattern (45 bp):
GGTTAGTTTTAAGCAAGCATGGTATTTGGTGGGAACATGGCAAAT
Found at i:101383143 original size:20 final size:21
Alignment explanation
Indices: 101383110--101383148 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
101383100 TAACATTATA
101383110 TATATATATTTTATTATATGT
1 TATATATATTTTATTATATGT
101383131 TATATAT-TTTTATTATAT
1 TATATATATTTTATTATAT
101383149 TACTTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (21 bp):
TATATATATTTTATTATATGT
Found at i:101383144 original size:25 final size:26
Alignment explanation
Indices: 101383105--101383171 Score: 73
Period size: 25 Copynumber: 2.5 Consensus size: 26
101383095 ATTTGTAACA
* * *
101383105 TTATATATATATATTTTATTA-TATG
1 TTATATATTTTTATTATATTACTATG
*
101383130 TTATATATTTTTATTATATTACTTATT
1 TTATATATTTTTATTATATTAC-TATG
101383157 TTATTATATTTTTAT
1 TTA-TATATTTTTAT
101383172 ATGTAAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
25 18 0.51
27 6 0.17
28 11 0.31
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (26 bp):
TTATATATTTTTATTATATTACTATG
Found at i:101383155 original size:9 final size:8
Alignment explanation
Indices: 101383104--101383206 Score: 52
Period size: 9 Copynumber: 12.6 Consensus size: 8
101383094 TATTTGTAAC
101383104 ATTATATAT
1 ATTATAT-T
*
101383113 ATATATTTT
1 AT-TATATT
101383122 ATTATA-T
1 ATTATATT
*
101383129 GTTATA-T
1 ATTATATT
101383136 ATT-T-TT
1 ATTATATT
101383142 ATTATATT
1 ATTATATT
*
101383150 ACTTATTTT
1 A-TTATATT
101383159 ATTATATT
1 ATTATATT
*
101383167 TTTATATGT
1 ATTATAT-T
**
101383176 AAAATATTT
1 ATTATA-TT
* *
101383185 GTTACATT
1 ATTATATT
101383193 ATTATTATT
1 ATTA-TATT
101383202 ATTAT
1 ATTAT
101383207 TATACATATT
Statistics
Matches: 70, Mismatches: 16, Indels: 17
0.68 0.16 0.17
Matches are distributed among these distances:
6 5 0.07
7 10 0.14
8 24 0.34
9 26 0.37
10 5 0.07
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (8 bp):
ATTATATT
Found at i:101383158 original size:17 final size:17
Alignment explanation
Indices: 101383104--101383166 Score: 74
Period size: 17 Copynumber: 3.5 Consensus size: 17
101383094 TATTTGTAAC
101383104 ATTATATATATATATTTT
1 ATTATAT-TATATATTTT
101383122 ATTATATGTTATATATTTTT
1 ATTATA--TTATATA-TTTT
101383142 ATTATATTACT-TATTTT
1 ATTATATTA-TATATTTT
101383159 ATTATATT
1 ATTATATT
101383167 TTTATATGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
17 12 0.29
18 11 0.27
19 7 0.17
20 11 0.27
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (17 bp):
ATTATATTATATATTTT
Found at i:101395465 original size:175 final size:176
Alignment explanation
Indices: 101395189--101395578 Score: 484
Period size: 175 Copynumber: 2.2 Consensus size: 176
101395179 ATCTTCGACG
* * * *
101395189 AGGAGCAAATCGAAGACATAGCAGATCTGACTTTTAGATGTTTTTCACATCAAAGCAGATCCAAA
1 AGGAACAAATCGAAGACATAGCAGATCTGACTTTCAGATGTTTCTCACACCAAAGCAGATCCAAA
* * *
101395254 ATAACCGACTGGAGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGAT-A
66 ATAACAGACTGAAATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGA
* *
101395318 TTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC-
131 TTT-TACTAAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACA
* * * * *
101395364 AGAGAACAAATCAAAGACATAGCAGGTTTGACTTTCGGATG-TTCTCACACCAAAGCAGATCTAA
1 AG-GAACAAATCGAAGACATAGCAGATCTGACTTTCAGATGTTTCTCACACCAAAGCAGATCCAA
* * * *
101395428 GATAACAGATCT-AACATCTCCAT-TTCGACGGAGAGCAGATATATAGTAGATCTAACCTTCAGA
65 AATAACAGA-CTGAA-ATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGA
* *
101395491 TGATTTTACTGAAGTAGATCCAAGATGATTTGGCATCCTTGTGTTCACA
128 TGATTTTACTAAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACA
* * * * *
101395540 AGGAGCAAATCGAAGACACAGTAGATTTGGCTTTCAGAT
1 AGGAACAAATCGAAGACATAGCAGATCTGACTTTCAGAT
101395579 ATTTATACTA
Statistics
Matches: 183, Mismatches: 27, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
175 136 0.74
176 47 0.26
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (176 bp):
AGGAACAAATCGAAGACATAGCAGATCTGACTTTCAGATGTTTCTCACACCAAAGCAGATCCAAA
ATAACAGACTGAAATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGA
TTTTACTAAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACA
Found at i:101395606 original size:262 final size:262
Alignment explanation
Indices: 101395310--101396132 Score: 1300
Period size: 262 Copynumber: 3.2 Consensus size: 262
101395300 AGATCTAACC
*
101395310 TTCAGATATTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC-AGAGAACAAA
1 TTCAGATATTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTGTGCTTACAAG-GAACAAA
* * *
101395374 TCAAAGACATAGCAGGTTTGACTTTCGGATGTTCTCACACCAAAGCAGATCTAAGATAACAGATC
65 TCAAAGACATAGCAGATTTGACTTTCGGATGTTCTTACACCAAAGCAGATCCAAGATAACAGATC
* *
101395439 TAACATCTCCATTTCGACGGAGAGCAGATATATAGTAGATCTAACCTTCAGATGATTTTACTGAA
130 TAGCATCTCCATTTCGACGGAGAGCAGATACATAGTAGATCTAACCTTCAGATGATTTTACTGAA
* *
101395504 GTAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAGTAGATTTG
195 GCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAGCAGATTTG
101395569 GCT
260 GCT
101395572 TTCAGATATTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTGTGCTTACAAGGAACAAAT
1 TTCAGATATTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTGTGCTTACAAGGAACAAAT
* *
101395637 CAAAGACATATCAGATTTGACTTTCAGATGTTCTTACACCAAAGCAGATCCAAGATAACAGATCT
66 CAAAGACATAGCAGATTTGACTTTCGGATGTTCTTACACCAAAGCAGATCCAAGATAACAGATCT
* *
101395702 GGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATGATTTTACTGAAG
131 AGCATCTCCATTTCGACGGAGAGCAGATACATAGTAGATCTAACCTTCAGATGATTTTACTGAAG
* *
101395767 CAGATCCAATATGATTTGGCATCCTTGTCTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGG
196 CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGG
101395832 CT
261 CT
* * * *
101395834 TTCAAATGTTTATACTAAAGCAGATCTAAGATGATTTGGCGTTCTTGTGCTTACAAGGAACAAAT
1 TTCAGATATTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTGTGCTTACAAGGAACAAAT
* * *
101395899 CGAAGACATAGCAGATTTGACTTTCGGATGTTCTTACA-C----TAGATCCAAGATAATAGATCT
66 CAAAGACATAGCAGATTTGACTTTCGGATGTTCTTACACCAAAGCAGATCCAAGATAACAGATCT
* *
101395959 AGCATCTCCATTTCGACAGAGAGCAGATACGTAGTAGATCTAACCTTCAGATGATTTTACTGAAG
131 AGCATCTCCATTTCGACGGAGAGCAGATACATAGTAGATCTAACCTTCAGATGATTTTACTGAAG
* * *
101396024 CAGATCCAAGAGGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGTCATAGCAGATTTGG
196 CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGG
101396089 CT
261 CT
* ** * *
101396091 TTCACG-TGTTTACGCTGAAGCAGATCTAAGATGATTTGGCAT
1 TTCA-GATATTTATACTAAAGCAGATCCAAGATGATTTGGCAT
101396133 CTCTGTATTG
Statistics
Matches: 522, Mismatches: 37, Indels: 9
0.92 0.07 0.02
Matches are distributed among these distances:
257 178 0.34
261 1 0.00
262 341 0.65
263 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (262 bp):
TTCAGATATTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTGTGCTTACAAGGAACAAAT
CAAAGACATAGCAGATTTGACTTTCGGATGTTCTTACACCAAAGCAGATCCAAGATAACAGATCT
AGCATCTCCATTTCGACGGAGAGCAGATACATAGTAGATCTAACCTTCAGATGATTTTACTGAAG
CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGG
CT
Found at i:101395619 original size:87 final size:88
Alignment explanation
Indices: 101395293--101396132 Score: 462
Period size: 87 Copynumber: 9.7 Consensus size: 88
101395283 GAGAGCAGAC
* * *
101395293 ACATAGCAGATCTAACCTTCAGAT-ATTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTG
1 ACATAGCAGATTTGACTTTCAGATGATTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTG
* * *
101395357 TGTTTAC-AGAGAACAAATCAAAG
66 TGTTCACAAG-GAGCAAATCGAAG
* * * * * * **
101395380 ACATAGCAGGTTTGACTTTCGGATG-TTCTCACACCAAAGCAGATCTAAGATAACAGATCTAACA
1 ACATAGCAGATTTGACTTTCAGATGATT-T-ATACTAAAGCAGATCCAAGAT----GATTTGGCA
** * *
101395444 -TCTCCAT-TTCGAC--GGAG---AGC-AGAT
60 TTCT-TGTGTTC-ACAAGGAGCAAATCGA-AG
* * * * * * * *
101395468 ATATAGTAGATCTAACCTTCAGATGATTT-TACTGAAGTAGATCCAAGATGATTTGGCATCCTTG
1 ACATAGCAGATTTGACTTTCAGATGATTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTG
101395532 TGTTCACAAGGAGCAAATCGAAG
66 TGTTCACAAGGAGCAAATCGAAG
* * *
101395555 ACACAGTAGATTTGGCTTTCAGAT-ATTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTG
1 ACATAGCAGATTTGACTTTCAGATGATTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTG
* *
101395619 TGCTT-ACAAGGAACAAATCAAAG
66 TG-TTCACAAGGAGCAAATCGAAG
* * * * *
101395642 ACATATCAGATTTGACTTTCAGATGTTCTTACACCAAAGCAGATCCAAGATAACAGATCTGGCA-
1 ACATAGCAGATTTGACTTTCAGATGAT-TTATACTAAAGCAGATCCAAGAT----GATTTGGCAT
** * *
101395706 TCTCCAT-TTCGAC--GGAG---AGC-AGAT
61 TCT-TGTGTTC-ACAAGGAGCAAATCGA-AG
* * * * * *
101395730 ACATAGCAGATCTAACCTTCAGATGATTT-TACTGAAGCAGATCCAATATGATTTGGCATCCTTG
1 ACATAGCAGATTTGACTTTCAGATGATTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTG
*
101395794 TCTTCACAAGGAGCAAATCGAAG
66 TGTTCACAAGGAGCAAATCGAAG
* * * * *
101395817 ACACAGCAGATTTGGCTTTCAAATG-TTTATACTAAAGCAGATCTAAGATGATTTGGCGTTCTTG
1 ACATAGCAGATTTGACTTTCAGATGATTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTG
*
101395881 TGCTT-ACAAGGAACAAATCGAAG
66 TG-TTCACAAGGAGCAAATCGAAG
* * * ** * * *
101395904 ACATAGCAGATTTGACTTTCGGATGTTCTTACACTAGATCCAAGAT--AATA-GATCTAGCA-TC
1 ACATAGCAGATTTGACTTTCAGATGAT-TTATACTA-AAGC-AGATCCAAGATGATTTGGCATTC
** *
101395965 TCCAT-TTCGAC-AGAGAGC--A--G-AT
63 T-TGTGTTC-ACAAG-GAGCAAATCGAAG
* * * * * * * *
101395987 ACGTAGTAGATCTAACCTTCAGATGATTT-TACTGAAGCAGATCCAAGAGGATTTGGCATCCTTG
1 ACATAGCAGATTTGACTTTCAGATGATTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTG
101396051 TGTTCACAAGGAGCAAATCGAAG
66 TGTTCACAAGGAGCAAATCGAAG
* * ** * *
101396074 TCATAGCAGATTTGGCTTTCACG-TG-TTTACGCTGAAGCAGATCTAAGATGATTTGGCAT
1 ACATAGCAGATTTGACTTTCA-GATGATTTATACTAAAGCAGATCCAAGATGATTTGGCAT
101396133 CTCTGTATTG
Statistics
Matches: 558, Mismatches: 133, Indels: 124
0.68 0.16 0.15
Matches are distributed among these distances:
79 4 0.01
80 2 0.00
81 6 0.01
82 36 0.06
83 38 0.07
84 10 0.02
86 45 0.08
87 255 0.46
88 69 0.12
89 51 0.09
90 2 0.00
91 11 0.02
92 9 0.02
93 20 0.04
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (88 bp):
ACATAGCAGATTTGACTTTCAGATGATTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTG
TGTTCACAAGGAGCAAATCGAAG
Found at i:101399518 original size:20 final size:20
Alignment explanation
Indices: 101399451--101399531 Score: 69
Period size: 20 Copynumber: 4.0 Consensus size: 20
101399441 TACTATACGT
101399451 TATTTTTAC-ATACATATTATA
1 TATTTTT-CTATAC-TATTATA
* *
101399472 TATTTTTCTATATTATTATG
1 TATTTTTCTATACTATTATA
*
101399492 TCA-TTTTGTATACTATTATA
1 T-ATTTTTCTATACTATTATA
101399512 TATTTTTATCTATA-TATTAT
1 TA-TTTT-TCTATACTATTAT
101399532 CATTATTAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
19 1 0.02
20 23 0.47
21 20 0.41
22 5 0.10
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.59
Consensus pattern (20 bp):
TATTTTTCTATACTATTATA
Found at i:101410737 original size:42 final size:42
Alignment explanation
Indices: 101410690--101410781 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
101410680 TGGCCCATAG
* * *
101410690 GCCCATTTCAATATCACATGTAAT-GTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACT-AATGAATGTATGCAA
*
101410732 GCCCATTTCAATATCATATGAAATACTAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACTAATGAATGTATGCAA
101410774 GCCCATTT
1 GCCCATTT
101410782 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 44 0.98
43 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACTAATGAATGTATGCAA
Found at i:101410955 original size:25 final size:26
Alignment explanation
Indices: 101410927--101411074 Score: 212
Period size: 26 Copynumber: 5.8 Consensus size: 26
101410917 CTCTTTTAAT
101410927 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
101410952 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* * **
101410977 AACTAGGGTA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
101411002 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
101411028 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
101411054 AACTGGGGCATAACCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
101411075 GCACTTCCTC
Statistics
Matches: 111, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 54 0.49
26 57 0.51
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:101411057 original size:52 final size:51
Alignment explanation
Indices: 101410927--101411074 Score: 235
Period size: 52 Copynumber: 2.9 Consensus size: 51
101410917 CTCTTTTAAT
**
101410927 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
* *
101410977 AACTAGGGTAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
*
101411028 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAACCCCTTTT
1 AACTGGGGCA-AAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
101411075 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
50 31 0.35
51 23 0.26
52 35 0.39
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (51 bp):
AACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
Found at i:101411939 original size:27 final size:27
Alignment explanation
Indices: 101411877--101411954 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
101411867 GGGCATATTC
101411877 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
101411904 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
101411931 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
101411955 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:101412025 original size:27 final size:27
Alignment explanation
Indices: 101411995--101412166 Score: 105
Period size: 27 Copynumber: 6.1 Consensus size: 27
101411985 GTAAATCTAC
*
101411995 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTAT
* *
101412022 AAACTAATGGTATTTCTA-TAATTTTTAATTT
1 AAACCAAGGGTATTT-TAGTAA-TTTT-A--T
* *
101412053 CACAAACC-AGTGGTATTTTGGTAATTTTAC
1 ---AAACCAAG-GGTATTTTAGTAATTTTAT
* * * *
101412083 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTAT
*
101412110 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTAT
* * *** *
101412137 AAATCGAGGGTAAAATAGTAATTCTAT
1 AAACCAAGGGTATTTTAGTAATTTTAT
101412164 AAA
1 AAA
101412167 TCGAGAGTAA
Statistics
Matches: 113, Mismatches: 21, Indels: 22
0.72 0.13 0.14
Matches are distributed among these distances:
27 84 0.74
28 7 0.06
31 1 0.01
32 1 0.01
33 6 0.05
34 14 0.12
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTAT
Found at i:101412105 original size:61 final size:61
Alignment explanation
Indices: 101411993--101412134 Score: 149
Period size: 61 Copynumber: 2.4 Consensus size: 61
101411983 TGGTAAATCT
** *
101411993 ACAAACCAAGGGTATTTTAGTAATTTTGTAAACTAATGGTATTTCTATAATTTTTAATTTC
1 ACAAACCAAGGGTATTTTAGTAATTTTACAAACTAAGGGTATTTCTATAATTTTTAATTTC
* * *
101412054 ACAAACC-AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTT-TGGTAA----T--TTT-
1 ACAAACCAAG-GGTATTTTAGTAATTTTACAAACTAAGGGTATTTCT-ATAATTTTTAATTTC
101412108 ACAAACCAAGGGTATTTTAGTAATTTT
1 ACAAACCAAGGGTATTTTAGTAATTTT
101412135 GTAAATCGAG
Statistics
Matches: 71, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
54 23 0.32
55 5 0.07
57 1 0.01
60 3 0.04
61 39 0.55
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (61 bp):
ACAAACCAAGGGTATTTTAGTAATTTTACAAACTAAGGGTATTTCTATAATTTTTAATTTC
Found at i:101412167 original size:27 final size:27
Alignment explanation
Indices: 101412127--101412336 Score: 253
Period size: 27 Copynumber: 7.8 Consensus size: 27
101412117 GGGTATTTTA
* *
101412127 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
101412154 GTAATTCTATAAATCGAGAGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
101412181 GTAATTCTATAAATCGAGGGT-AAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
101412207 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * **
101412234 GTAATTATATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
101412261 GTAATTATGTAAATC-AGGAGTAAAATG
1 GTAATTCTGTAAATCGAGG-GTAAAATG
* * *
101412288 GTAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
101412315 GTAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
101412337 CTTTGGTAAT
Statistics
Matches: 162, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
26 27 0.17
27 133 0.82
28 2 0.01
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:101412185 original size:81 final size:81
Alignment explanation
Indices: 101412098--101412353 Score: 237
Period size: 81 Copynumber: 3.2 Consensus size: 81
101412088 AGGGGTATTT
** **
101412098 TGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTA
1 TGGTAATTTTACAAACCAAGGGTATAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTA
*
101412163 TAAATCGAGAGTAAAA
66 TAAATCGAGGGTAAAA
* * * * * * * *
101412179 TGGTAATTCTATAAATCGAGGGTA-AATGGTAATTCTGTAAGTCGAGGGTAAAACGGTAATTATA
1 TGGTAATTTTACAAACCAAGGGTATAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTA
101412243 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
** * ** * * * * *
101412259 CAGTAATTATGTAAATC-AGGAGTAAAATGGTAATTATGTAAATCGGGGGTAAAACGGTAATTCT
1 TGGTAATTTTACAAACCAAGG-GTATAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCT
* * ***
101412323 GTAAATCGGGGGTACTT
65 ATAAATCGAGGGTAAAA
101412340 TGGTAATTTTACAA
1 TGGTAATTTTACAA
101412354 GTCGAAGGTA
Statistics
Matches: 142, Mismatches: 31, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
79 3 0.02
80 63 0.44
81 76 0.54
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (81 bp):
TGGTAATTTTACAAACCAAGGGTATAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTA
TAAATCGAGGGTAAAA
Found at i:101412247 original size:107 final size:108
Alignment explanation
Indices: 101412127--101412336 Score: 298
Period size: 107 Copynumber: 2.0 Consensus size: 108
101412117 GGGTATTTTA
* * * * *
101412127 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATC-GAGAGTAAAATGGTAATTCTAT
1 GTAATTATATAAATCGAGGGTAAAACAGTAATTATATAAATCAG-GAGTAAAATGGTAATTATAT
* *
101412191 AAATCGAGGGT-AAATGGTAATTCTGTAAGTCGAGGGTAAAACG
65 AAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* *
101412234 GTAATTATATAAATCGAGGGTAAAACAGTAATTATGTAAATCAGGAGTAAAATGGTAATTATGTA
1 GTAATTATATAAATCGAGGGTAAAACAGTAATTATATAAATCAGGAGTAAAATGGTAATTATATA
* *
101412299 AATCGGGGGTAAAACGGTAATTCTGTAAATCGGGGGTA
66 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
101412337 CTTTGGTAAT
Statistics
Matches: 90, Mismatches: 11, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
107 65 0.72
108 25 0.28
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (108 bp):
GTAATTATATAAATCGAGGGTAAAACAGTAATTATATAAATCAGGAGTAAAATGGTAATTATATA
AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:101412363 original size:27 final size:27
Alignment explanation
Indices: 101412342--101412431 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
101412332 GGGTACTTTG
*
101412342 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
101412369 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
101412396 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
101412423 GTAATTTTA
1 GTAATTTTA
101412432 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:101412383 original size:54 final size:54
Alignment explanation
Indices: 101412325--101412431 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
101412315 GTAATTCTGT
* * *
101412325 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
101412379 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
101412432 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:101412445 original size:27 final size:27
Alignment explanation
Indices: 101412342--101412446 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
101412332 GGGTACTTTG
* *
101412342 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
101412369 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
101412396 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
101412423 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
101412447 CTAAACAGGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:101415331 original size:44 final size:44
Alignment explanation
Indices: 101415282--101415374 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 44
101415272 GGAACAAGTT
* *
101415282 GAAGATAGCAGATTCGGCATCTCTGTATTGTCAGAAAGCAGATC
1 GAAGATACCAGATTCGGCATCTCTGTATTGGCAGAAAGCAGATC
* * * *
101415326 TAAGATACCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATC
1 GAAGATACCAGATTCGGCATCTCTGTATTGGCAGAAAGCAGATC
101415370 GAAGA
1 GAAGA
101415375 CATAGCTGAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (44 bp):
GAAGATACCAGATTCGGCATCTCTGTATTGGCAGAAAGCAGATC
Found at i:101415344 original size:88 final size:89
Alignment explanation
Indices: 101415159--101415354 Score: 201
Period size: 88 Copynumber: 2.2 Consensus size: 89
101415149 CAAAGAAGCA
* *
101415159 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAGATAGCAAATCTGACATTCATGTGCTT
1 AGATTTGGCATCCCTGTATTTATAGGGAACAGATTGAAGATAGCAAATCTGACATTCATGTGATT
**
101415224 ACAGCAAAACAGATTGAAGATTTC
66 ACAGCAAAACAGATTGAAGATACC
* *
101415248 AGCA--TGGCATCCCTGTATTTATAGGGAACA-AGTTGAAGATAGCAGAT-TCGGCATCTC-TGT
1 AG-ATTTGGCATCCCTGTATTTATAGGGAACAGA-TTGAAGATAGCAAATCT-GACAT-TCATGT
* *
101415308 -ATTGTCAG-AAAGCAGATCT-AAGATACC
62 GATT-ACAGCAAAACAGAT-TGAAGATACC
*
101415335 AGATTTGGCATCTCTGTATT
1 AGATTTGGCATCCCTGTATT
101415355 GGCGGAGAGC
Statistics
Matches: 90, Mismatches: 9, Indels: 17
0.78 0.08 0.15
Matches are distributed among these distances:
86 1 0.01
87 20 0.22
88 64 0.71
89 4 0.04
90 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (89 bp):
AGATTTGGCATCCCTGTATTTATAGGGAACAGATTGAAGATAGCAAATCTGACATTCATGTGATT
ACAGCAAAACAGATTGAAGATACC
Found at i:101415719 original size:205 final size:205
Alignment explanation
Indices: 101415367--101415860 Score: 792
Period size: 205 Copynumber: 2.4 Consensus size: 205
101415357 CGGAGAGCAG
*
101415367 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTATGATGAAGCAAATCTAAGATGATTTGTCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
*
101415432 TCTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATCTCCACTTCAATGGAGAGCAGATACATA
66 TCTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATCTCCACTTCAATGGAGAGCAGACACATA
* *
101415497 GCAGATCTAACCTTCAGATGTTTATACTGAAGCAAATCCAAGATGGTTTGGTATCCTTGTGCTTA
131 GCAGATCTAAACTTCAGATGTTTATACTGAAGCAAATCCAAGATGGTTTGGCATCCTTGTGCTTA
101415562 CAAGGAACAA
196 CAAGGAACAA
* *
101415572 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAAATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
* ** * * *
101415637 TCTCTGTATTGGCAGAGAGCAAATCGAAGTCTGGCGTCTCCACTTCAATGGAGAGTAGACATATA
66 TCTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATCTCCACTTCAATGGAGAGCAGACACATA
* *
101415702 GCAGAT-TCAAACTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTT
131 GCAGATCT-AAACTTCAGATGTTTATACTGAAGCAAATCCAAGATGGTTTGGCATCCTTGTGCTT
* *
101415766 ACAAGGAGCGA
195 ACAAGGAACAA
* * **
101415777 ATCGAAGACATAGCCGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATGAGTCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
101415842 TCTCTGTATTGTCAGAGAA
66 TCTCTGTATTGTCAGAGAA
101415861 CGAATTGAAG
Statistics
Matches: 264, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
204 1 0.00
205 263 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (205 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
TCTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATCTCCACTTCAATGGAGAGCAGACACATA
GCAGATCTAAACTTCAGATGTTTATACTGAAGCAAATCCAAGATGGTTTGGCATCCTTGTGCTTA
CAAGGAACAA
Found at i:101417740 original size:10 final size:10
Alignment explanation
Indices: 101417722--101417788 Score: 55
Period size: 10 Copynumber: 6.6 Consensus size: 10
101417712 TTTACATACA
101417722 TATTATATAT
1 TATTATATAT
*
101417732 TATTCTATAT
1 TATTATATAT
*
101417742 TATTATCTCAT
1 TATTATAT-AT
* *
101417753 T-TTGTATAC
1 TATTATATAT
101417762 TATTATATAT
1 TATTATATAT
* *
101417772 TTTTATCTAT
1 TATTATATAT
101417782 ATATTAT
1 -TATTAT
101417789 CATTATTAAA
Statistics
Matches: 43, Mismatches: 11, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
9 2 0.05
10 33 0.77
11 8 0.19
ACGTcount: A:0.31, C:0.07, G:0.01, T:0.60
Consensus pattern (10 bp):
TATTATATAT
Found at i:101417747 original size:20 final size:19
Alignment explanation
Indices: 101417717--101417785 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 19
101417707 TTATTTTTAC
101417717 ATACATATTATATATTATTCT
1 ATAC-TATTATATATT-TTCT
* * *
101417738 ATATTATTATCTCATTTTGT
1 ATACTATTATAT-ATTTTCT
101417758 ATACTATTATATATTTT-T
1 ATACTATTATATATTTTCT
101417776 AT-CTA-TATAT
1 ATACTATTATAT
101417786 TATCATTATT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
16 5 0.12
17 3 0.07
18 3 0.07
19 5 0.12
20 20 0.48
21 6 0.14
ACGTcount: A:0.33, C:0.09, G:0.01, T:0.57
Consensus pattern (19 bp):
ATACTATTATATATTTTCT
Found at i:101420662 original size:23 final size:23
Alignment explanation
Indices: 101420631--101420674 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
101420621 ATTGAGTATT
* *
101420631 AAAAGTATATATATAATATAGAC
1 AAAAATATATACATAATATAGAC
*
101420654 AAAAATATATGCATAATATAG
1 AAAAATATATACATAATATAG
101420675 TATGGAAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (23 bp):
AAAAATATATACATAATATAGAC
Found at i:101420746 original size:9 final size:9
Alignment explanation
Indices: 101420734--101420822 Score: 58
Period size: 9 Copynumber: 9.8 Consensus size: 9
101420724 TATTAAAAAT
*
101420734 ATATACATA
1 ATATATATA
101420743 ATATATATA
1 ATATATATA
* *
101420752 AAAAATATA
1 ATATATATA
*
101420761 ATAT-TAAAA
1 ATATAT-ATA
101420770 ATATATACATA
1 ATATAT--ATA
101420781 ATATATATA
1 ATATATATA
*
101420790 AAATATATA
1 ATATATATA
101420799 CATA-ATATA
1 -ATATATATA
* *
101420808 GTAT-TAAA
1 ATATATATA
101420816 ATATATA
1 ATATATA
101420823 CATAACATAT
Statistics
Matches: 61, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
8 9 0.15
9 41 0.67
10 3 0.05
11 8 0.13
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (9 bp):
ATATATATA
Found at i:101420750 original size:13 final size:13
Alignment explanation
Indices: 101420732--101420833 Score: 71
Period size: 13 Copynumber: 8.4 Consensus size: 13
101420722 GATATTAAAA
101420732 ATATATACATAAT
1 ATATATACATAAT
* *
101420745 ATATATAAAAAAT
1 ATATATACATAAT
101420758 ATAATATTA-A-AA-
1 AT-ATA-TACATAAT
101420770 ATATATACATAAT
1 ATATATACATAAT
101420783 ATATAT--A-AA-
1 ATATATACATAAT
101420792 ATATATACATAAT
1 ATATATACATAAT
*
101420805 ATAGTAT---TAAA
1 ATA-TATACATAAT
*
101420816 ATATATACATAAC
1 ATATATACATAAT
101420829 ATATA
1 ATATA
101420834 CATATCAGAA
Statistics
Matches: 72, Mismatches: 4, Indels: 26
0.71 0.04 0.25
Matches are distributed among these distances:
9 6 0.08
10 7 0.10
11 12 0.17
12 6 0.08
13 32 0.44
14 7 0.10
15 2 0.03
ACGTcount: A:0.59, C:0.05, G:0.01, T:0.35
Consensus pattern (13 bp):
ATATATACATAAT
Found at i:101420765 original size:38 final size:38
Alignment explanation
Indices: 101420723--101420798 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
101420713 GAATAATGTG
101420723 ATATTAAAAATATATACATAATATATATAAAAAATATA
1 ATATTAAAAATATATACATAATATATATAAAAAATATA
*
101420761 ATATTAAAAATATATACATAATATATATAAAATATATA
1 ATATTAAAAATATATACATAATATATATAAAAAATATA
101420799 CATAATATAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (38 bp):
ATATTAAAAATATATACATAATATATATAAAAAATATA
Found at i:101420769 original size:14 final size:14
Alignment explanation
Indices: 101420742--101420774 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
101420732 ATATATACAT
101420742 AATAT-ATATAAAA
1 AATATAATATAAAA
*
101420755 AATATAATATTAAA
1 AATATAATATAAAA
101420769 AATATA
1 AATATA
101420775 TACATAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AATATAATATAAAA
Found at i:101420770 original size:16 final size:18
Alignment explanation
Indices: 101420740--101420796 Score: 64
Period size: 16 Copynumber: 3.2 Consensus size: 18
101420730 AAATATATAC
101420740 ATAATATATATAAAAAAT
1 ATAATATATATAAAAAAT
*
101420758 ATAATAT-TA-AAAATAT
1 ATAATATATATAAAAAAT
*
101420774 ATACATAATATATATAAAAT
1 ATA-AT-ATATATAAAAAAT
101420794 ATA
1 ATA
101420797 TACATAATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
16 9 0.28
17 4 0.12
18 9 0.28
19 2 0.06
20 8 0.25
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (18 bp):
ATAATATATATAAAAAAT
Found at i:101420834 original size:11 final size:11
Alignment explanation
Indices: 101420731--101420837 Score: 82
Period size: 11 Copynumber: 10.1 Consensus size: 11
101420721 TGATATTAAA
101420731 AATATATACAT
1 AATATATACAT
101420742 AATATAT--AT
1 AATATATACAT
* *
101420751 AA-A-AAATAT
1 AATATATACAT
*
101420760 AATAT-TA-AA
1 AATATATACAT
101420769 AATATATACAT
1 AATATATACAT
* *
101420780 AATATATATAA
1 AATATATACAT
101420791 AATATATACAT
1 AATATATACAT
* *
101420802 AATATAGTATTAA
1 AATATA-TA-CAT
101420815 AATATATACAT
1 AATATATACAT
*
101420826 AACATATACAT
1 AATATATACAT
101420837 A
1 A
101420838 TCAGAAATAA
Statistics
Matches: 75, Mismatches: 13, Indels: 16
0.72 0.12 0.15
Matches are distributed among these distances:
7 1 0.01
8 1 0.01
9 14 0.19
10 4 0.05
11 44 0.59
12 4 0.05
13 7 0.09
ACGTcount: A:0.59, C:0.06, G:0.01, T:0.35
Consensus pattern (11 bp):
AATATATACAT
Found at i:101420941 original size:23 final size:22
Alignment explanation
Indices: 101420885--101420954 Score: 70
Period size: 23 Copynumber: 3.2 Consensus size: 22
101420875 ATAATACTAC
101420885 AAAAATATGTACAT-ACATATT
1 AAAAATATGTACATAACATATT
**
101420906 AAAAATAAATACATAACAATATT
1 AAAAATATGTACATAAC-ATATT
* * * *
101420929 AATAGTATGTACATAATATAAT
1 AAAAATATGTACATAACATATT
101420951 AAAA
1 AAAA
101420955 TGTATGAATA
Statistics
Matches: 38, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
21 12 0.32
22 9 0.24
23 17 0.45
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.30
Consensus pattern (22 bp):
AAAAATATGTACATAACATATT
Found at i:101421020 original size:12 final size:14
Alignment explanation
Indices: 101420989--101421044 Score: 55
Period size: 14 Copynumber: 4.2 Consensus size: 14
101420979 AAAACTATAC
101420989 ATAATATATAAAAT
1 ATAATATATAAAAT
*
101421003 ATAATATTTAAAA-
1 ATAATATATAAAAT
* *
101421016 A-AATATACATAAT
1 ATAATATATAAAAT
*
101421029 ATAATAT-TAATAT
1 ATAATATATAAAAT
101421042 ATA
1 ATA
101421045 TGCGTAACAT
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
12 8 0.24
13 8 0.24
14 17 0.52
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (14 bp):
ATAATATATAAAAT
Found at i:101421023 original size:35 final size:36
Alignment explanation
Indices: 101420964--101421031 Score: 111
Period size: 35 Copynumber: 1.9 Consensus size: 36
101420954 ATGTATGAAT
* *
101420964 AATATGATATTTTAAAAAACTATACATAATATATAA
1 AATATAATATTTTAAAAAAATATACATAATATATAA
101421000 AATATAATA-TTTAAAAAAATATACATAATATA
1 AATATAATATTTTAAAAAAATATACATAATATA
101421032 ATATTAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 22 0.73
36 8 0.27
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.35
Consensus pattern (36 bp):
AATATAATATTTTAAAAAAATATACATAATATATAA
Found at i:101421223 original size:12 final size:12
Alignment explanation
Indices: 101421206--101421231 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
101421196 AATAAATAAA
101421206 AATAACAGTAAT
1 AATAACAGTAAT
101421218 AATAACAGTAAT
1 AATAACAGTAAT
101421230 AA
1 AA
101421232 AATATAATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23
Consensus pattern (12 bp):
AATAACAGTAAT
Found at i:101421247 original size:42 final size:43
Alignment explanation
Indices: 101421170--101421252 Score: 98
Period size: 42 Copynumber: 2.0 Consensus size: 43
101421160 ATAAGTATTA
* *
101421170 AGTAAAAATAATAATAATAAAATGCTAATAAATAAA-AATAAC
1 AGTAAAAATAACAATAATAAAATGATAATAAATAAATAATAAC
* * *
101421212 AGTAATAATAACAGTAATAAAAT-ATAATAGTATAAATAATA
1 AGTAAAAATAACAATAATAAAATGATAATA-AATAAATAATA
101421253 TTAAAATTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
41 5 0.15
42 25 0.74
43 4 0.12
ACGTcount: A:0.64, C:0.04, G:0.06, T:0.27
Consensus pattern (43 bp):
AGTAAAAATAACAATAATAAAATGATAATAAATAAATAATAAC
Found at i:101423344 original size:53 final size:53
Alignment explanation
Indices: 101423252--101423355 Score: 145
Period size: 53 Copynumber: 2.0 Consensus size: 53
101423242 GATTACAAAT
* * *
101423252 TAAGATAATTAAGAATTTAAATTAAATCAGGATATTTAAAGTTTTAATTTATA
1 TAAGATAATTAAGAATTTAAATTAAATCAAGATAATTAAAATTTTAATTTATA
* * * *
101423305 TAAGATAATTAGGAGTTTAAATTAAATTAATATAATTAAAATTTTAATTTA
1 TAAGATAATTAAGAATTTAAATTAAATCAAGATAATTAAAATTTTAATTTA
101423356 ATTAAAAAGA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.48, C:0.01, G:0.09, T:0.42
Consensus pattern (53 bp):
TAAGATAATTAAGAATTTAAATTAAATCAAGATAATTAAAATTTTAATTTATA
Found at i:101423356 original size:27 final size:27
Alignment explanation
Indices: 101423248--101423360 Score: 97
Period size: 27 Copynumber: 4.3 Consensus size: 27
101423238 AGGAGATTAC
101423248 AAATTAAGATAATTAAGAA-TTTAAATT
1 AAATTAAGATAATTAA-AATTTTAAATT
* * * * *
101423275 AAATCAGGATATTTAAAGTTTTAATTT
1 AAATTAAGATAATTAAAATTTTAAATT
* ** *
101423302 ATA-TAAGATAATTAGGAGTTTAAATT
1 AAATTAAGATAATTAAAATTTTAAATT
*
101423328 AAATTAATATAATTAAAATTTT-AATT
1 AAATTAAGATAATTAAAATTTTAAATT
*
101423354 TAATTAA
1 AAATTAA
101423361 AAAGAGTTCT
Statistics
Matches: 64, Mismatches: 20, Indels: 5
0.72 0.22 0.06
Matches are distributed among these distances:
26 28 0.44
27 36 0.56
ACGTcount: A:0.50, C:0.01, G:0.08, T:0.42
Consensus pattern (27 bp):
AAATTAAGATAATTAAAATTTTAAATT
Found at i:101424464 original size:168 final size:167
Alignment explanation
Indices: 101424175--101424682 Score: 757
Period size: 168 Copynumber: 3.0 Consensus size: 167
101424165 CTTTGGGAAC
* * * * *
101424175 TCATGTTTATCTTCCTTATCCTCATCTTGTTTTTCCTTGCACTCGGGTATTTTTGGATATTCGGC
1 TCATCTTTATGTTCCTTATCCTCATCTTG-TTTTCCTTGTACTCGGGTATTTTCGGATATTCGAC
** ** * *
101424240 TTTATGTTTCTCGTGCTCTTTAGGCTTTTCCCATTTGAAGAAATTGGATTTTTCTTTCTCGTACT
65 TTCGTGTTTCTCGTGCTCTTTAGGCTTTTCCCATTTGGGGAAATCGGGTTTTTCTTTCTCGTACT
* * * *
101424305 CTTCGTGATCTTTCGATTCGTGTGACTCGTGGCACTCT
130 CTTCGTGCTCCTTCGATTCGCGTGACTCGTGGTACTCT
*
101424343 TCATCTTTATGTTCCTTA-CTCTTATCTTGCTTTTCCTTGTACTCGGGTATTTTCGGATATTCGA
1 TCATCTTTATGTTCCTTATC-CTCATCTTG-TTTTCCTTGTACTCGGGTATTTTCGGATATTCGA
* *
101424407 CTTCGTGTTTCTCGTGCTCTTTAGGCTTTTCCCATTTGGGGAACTCGGGTTTTTCTTTCTCGTAT
64 CTTCGTGTTTCTCGTGCTCTTTAGGCTTTTCCCATTTGGGGAAATCGGGTTTTTCTTTCTCGTAC
* *
101424472 TCTTCGTGCTCCTTCGATTCGCGTGATTCATGGTACTCT
129 TCTTCGTGCTCCTTCGATTCGCGTGACTCGTGGTACTCT
* *
101424511 TCATTTTTATGTTCCTTATCCTCATCTTGTTTGTCCTTGTACTCGGGTATTTTCGGATATTCAAC
1 TCATCTTTATGTTCCTTATCCTCATCTTGTTT-TCCTTGTACTCGGGTATTTTCGGATATTCGAC
* *
101424576 TTCGTGTTTCTTGTGCTCTTTAGGCTTTTCCCATTTGGGGAAATCGGGTTTTTCTTTATCGTACT
65 TTCGTGTTTCTCGTGCTCTTTAGGCTTTTCCCATTTGGGGAAATCGGGTTTTTCTTTCTCGTACT
101424641 CTTCGTGCTCCTTCGATTCGCGTGACTCGTGGTACTCT
130 CTTCGTGCTCCTTCGATTCGCGTGACTCGTGGTACTCT
101424679 TCAT
1 TCAT
101424683 GATGTTTGCA
Statistics
Matches: 307, Mismatches: 30, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
167 4 0.01
168 302 0.98
169 1 0.00
ACGTcount: A:0.12, C:0.23, G:0.18, T:0.47
Consensus pattern (167 bp):
TCATCTTTATGTTCCTTATCCTCATCTTGTTTTCCTTGTACTCGGGTATTTTCGGATATTCGACT
TCGTGTTTCTCGTGCTCTTTAGGCTTTTCCCATTTGGGGAAATCGGGTTTTTCTTTCTCGTACTC
TTCGTGCTCCTTCGATTCGCGTGACTCGTGGTACTCT
Found at i:101424710 original size:72 final size:73
Alignment explanation
Indices: 101424621--101424780 Score: 295
Period size: 73 Copynumber: 2.2 Consensus size: 73
101424611 TGGGGAAATC
* *
101424621 GGGTTTTTCTTTATCGTACTC-TTCGTGCTCCTTCGATTCGCGTGACTCGTGGTACTCTTCATGA
1 GGGTTTTTGTTTTTCGTACTCATTCGTGCTCCTTCGATTCGCGTGACTCGTGGTACTCTTCATGA
101424685 TGTTTGCA
66 TGTTTGCA
101424693 GGGTTTTTGTTTTTCGTACTCATTCGTGCTCCTTCGATTCGCGTGACTCGTGGTACTCTTCATGA
1 GGGTTTTTGTTTTTCGTACTCATTCGTGCTCCTTCGATTCGCGTGACTCGTGGTACTCTTCATGA
101424758 TGTTTGCA
66 TGTTTGCA
101424766 GGGTTTTTGTTTTTC
1 GGGTTTTTGTTTTTC
101424781 CTCCTTGTGC
Statistics
Matches: 85, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
72 19 0.22
73 66 0.78
ACGTcount: A:0.10, C:0.21, G:0.23, T:0.46
Consensus pattern (73 bp):
GGGTTTTTGTTTTTCGTACTCATTCGTGCTCCTTCGATTCGCGTGACTCGTGGTACTCTTCATGA
TGTTTGCA
Found at i:101425830 original size:21 final size:22
Alignment explanation
Indices: 101425805--101425848 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
101425795 AAAGTATAAT
*
101425805 TATGATTAA-ATTATTATATTA
1 TATGATTAATATGATTATATTA
101425826 TATGATTAATTATGATTATATTA
1 TATGATTAA-TATGATTATATTA
101425849 AACATAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
23 11 0.55
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (22 bp):
TATGATTAATATGATTATATTA
Found at i:101428012 original size:17 final size:18
Alignment explanation
Indices: 101427980--101428014 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
101427970 CCATGTGCCT
101427980 TGCCCATGTGGGCTCACA
1 TGCCCATGTGGGCTCACA
*
101427998 TGCCCGTGT-GGCTCACA
1 TGCCCATGTGGGCTCACA
101428015 CGGCCCAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.14, C:0.34, G:0.29, T:0.23
Consensus pattern (18 bp):
TGCCCATGTGGGCTCACA
Found at i:101428911 original size:14 final size:14
Alignment explanation
Indices: 101428892--101428923 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
101428882 TTCTAGCATA
101428892 AACCCTTTCCAATT
1 AACCCTTTCCAATT
101428906 AACCCTTTCCAATT
1 AACCCTTTCCAATT
101428920 AACC
1 AACC
101428924 ACTAGCTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.38, G:0.00, T:0.31
Consensus pattern (14 bp):
AACCCTTTCCAATT
Found at i:101434019 original size:18 final size:19
Alignment explanation
Indices: 101433975--101434022 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
101433965 TCAGTCATTC
101433975 ATTTATTCAGTAACAGTCAA
1 ATTT-TTCAGTAACAGTCAA
* *
101433995 A-TATTCAGTAGCAGT-AA
1 ATTTTTCAGTAACAGTCAA
101434012 ATTTTTCAGTA
1 ATTTTTCAGTA
101434023 CCTTTATTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 3 0.12
18 19 0.79
19 1 0.04
20 1 0.04
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (19 bp):
ATTTTTCAGTAACAGTCAA
Found at i:101440677 original size:74 final size:74
Alignment explanation
Indices: 101440588--101441300 Score: 990
Period size: 74 Copynumber: 9.7 Consensus size: 74
101440578 AAAATTTAAT
101440588 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTGTCAAA
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTGTCAAA
101440653 AAAATCAAC
66 AAAATCAAC
* * *
101440662 CCGTATTGGGAGAGGTGAGTTGAGCCTC-GGACA-GCTGAGG----TT-AATTT-TCGTT-T---
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT-GTTGTCAA
101440715 -AAAATCAAC
65 AAAAATCAAC
101440724 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTCAATTTCTGTTGTCAAA
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTGTCAAA
101440788 AAAATCAAC
66 AAAATCAAC
*
101440797 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAAATTT-TCGTATGTT
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC-AATTTCT-GT-TG--
101440861 TCAAAAAAATCAAC
61 TCAAAAAAATCAAC
*
101440875 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAAGTATTTTCAATTTCTGTTGTCAAA
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTGTCAAA
101440940 AAAATCAAC
66 AAAATCAAC
101440949 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTCAATTTCTGTTGTCAAA
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTGTCAAA
101441013 AAAATCAAC
66 AAAATCAAC
101441022 TCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGA-GTA-TTTCAA-TTCTGTT-TCAAA
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTGTCAAA
101441082 AAAATCAAC
66 AAAATCAAC
*
101441091 TCATATTGC--GAGG-GAGTTGAGCCTCAGGACACGC-GAGGTATTTTCAATTTCTTTTCAATTT
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA-----TTTC--TGT
101441152 CTGTTCAAAAAAATCAAC
59 -TG-TCAAAAAAATCAAC
*
101441170 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAA
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTGTCAAA
101441235 AAAATCAAC
66 AAAATCAAC
* * * * *
101441244 TCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTAAATTTC
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATTTC
101441301 CGTTTTTCAA
Statistics
Matches: 580, Mismatches: 19, Indels: 78
0.86 0.03 0.12
Matches are distributed among these distances:
62 34 0.06
63 5 0.01
64 7 0.01
66 17 0.03
67 24 0.04
68 16 0.03
69 25 0.04
70 7 0.01
71 9 0.02
72 17 0.03
73 116 0.20
74 131 0.23
75 9 0.02
76 29 0.05
77 8 0.01
78 66 0.11
79 23 0.04
81 4 0.01
82 21 0.04
83 12 0.02
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (74 bp):
TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTGTCAAA
AAAATCAAC
Found at i:101440834 original size:73 final size:73
Alignment explanation
Indices: 101440715--101441292 Score: 859
Period size: 73 Copynumber: 7.8 Consensus size: 73
101440705 ATTTTCGTTT
101440715 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTCAATTTCTG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTCAATTTCTG
101440780 TTGTCAAA
66 TTGTCAAA
101440788 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAAATTT-
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT-TC-AATTTC
101440852 TCGTATGTTTCAAA
64 T-GT-TG--TCAAA
*
101440866 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAAGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTCAATTTCT
101440931 GTTGTCAAA
65 GTTGTCAAA
101440940 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTCAATTTCTG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTCAATTTCTG
101441005 TTGTCAAA
66 TTGTCAAA
101441013 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGA-GTATTTCAA-TTCTG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTCAATTTCTG
101441075 TT-TCAAA
66 TTGTCAAA
101441082 AAAATCAACTCATATTGC--GAGG-GAGTTGAGCCTCAGGACACGC-GAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTCAA-----
*
101441143 TTTCAATTTCTGTTCAAA
60 TTTC--TGT-TG-TCAAA
101441161 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTCAATTTCT
101441226 GTTGTCAAA
65 GTTGTCAAA
* * * *
101441235 AAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTT
101441293 TAAATTTCCG
Statistics
Matches: 468, Mismatches: 8, Indels: 56
0.88 0.02 0.11
Matches are distributed among these distances:
66 15 0.03
67 14 0.03
68 6 0.01
69 23 0.05
70 7 0.01
71 9 0.02
72 10 0.02
73 113 0.24
74 105 0.22
75 13 0.03
76 19 0.04
77 8 0.02
78 64 0.14
79 25 0.05
81 4 0.01
82 21 0.04
83 11 0.02
84 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (73 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTCAATTTCTG
TTGTCAAA
Found at i:101441159 original size:79 final size:82
Alignment explanation
Indices: 101441064--101442115 Score: 357
Period size: 77 Copynumber: 12.7 Consensus size: 82
101441054 ACGCTGAGTA
*
101441064 TTTCAA-TTCTGTTTCAAAAAAATCAACTCATATTGC-GAGG-GAGTTGAGCCTCAGGACACGCG
1 TTTCAATTTCTGCTTCAAAAAAATCAACTCATATTGCAGAGGTGAGTTGAGCCTCAGGACACGCG
101441126 AGGTATTTTCAATTTCT
66 AGGTATTTTCAATTTCT
101441143 TTTCAATTTCTG-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTCAATTTCTGCTTCAAAAAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCAGGACACGC
*
101441207 TGAGGTAATTTCAA-----
65 -GAGGTATTTTCAATTTCT
* * * *
101441221 TTTC--TGT-TG--TCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACAC
1 TTTCAATTTCTGCTTCAAAAAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCAGG--ACAC
*
101441281 GCCGAGGTATTTTAAATTTCCGTT
63 G-CGAGGTATTTTCAATTT-C--T
* * *
101441305 TTTCAATTTCTGCCTTTCAAAATAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCT
1 TTTCAATTTCTG-C-TTC-AAA-AAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCAGG-A
** * *
101441369 CACGCGCTG-A---GC----TAT
60 CACGCGAGGTATTTTCAATTTCT
* * * * * *
101441384 TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGA--G-TGAGTTGAGCCTT-AG-ATC-
1 TTTCAATTTCTG-CTTCAAAAA--AA-TCA-ACT-C-ATATTGCAGAGGTGAG--TTGAGCCTCA
101441443 --ACACGCCGAGGTATTTTCAATTTCCGTT
57 GGACACG-CGAGGTATTTTCAATTT-C--T
* * *
101441471 TTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCT
1 TTTCAATTTCTG-C-TTC--AAAAAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCAGG-A
*
101441535 CATGCGCTGAGCTATTTTCAA-----
60 CA--CGC-GAGGTATTTTCAATTTCT
* * * *
101441556 TTTC--TGTCT--TTCAAAAAAATCAACTCGTATTGCAAGCGGCGAGTTGAGCCTCAGGTCACAC
1 TTTCAATTTCTGCTTCAAAAAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCAGG--ACAC
*
101441617 GTCGAGGTATTTTCAATTTTTGTT
63 G-CGAGGTATTTTCAA--TTT-CT
* *
101441641 TTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCT
1 TTTCAATTTCTG-C-TTC--AAAAAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCAGG--
* *
101441705 CACGCGCTGAGCTATTTTCAA----T
59 -ACACGC-GAGGTATTTTCAATTTCT
* *
101441727 TTT---TGTCT--TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACAC
1 TTTCAATTTCTGCTTCAAAAAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCAG--GACAC
101441787 GCCGAGGTATTTTCAATTTCTATT
63 G-CGAGGTATTTTCAATTTC---T
* *
101441811 TTTCAATTTCTGCCTTTCAAAAAGAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGC
1 TTTCAATTTCTG-C-TTC--AAA-AAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCAGG-
* ** * *
101441875 TCACGCGCTG-A----C---CTAT
59 ACACGCGAGGTATTTTCAATTTCT
* **
101441891 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCTTCAAATCAC
1 TTTCAATTTCTG-C-TTCAAAAAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTC--AGGAC
*
101441956 ACACTGAGGTA-TTT---TTT-T
61 ACGC-GAGGTATTTTCAATTTCT
* * ** *** * *
101441974 ATTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACAT
1 TTTCAATTTCTGCTTCAAAAAAATCAACTCATATTGC-AGAGGTGAGTTGAGCC-TCAG-GACA-
**
101442039 ATCGAGGTATTTTCAAAATTTTCT
62 CGCGAGGTATTTTC--AA-TTTCT
* ** *
101442063 TTTCAAGTTAAGTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTCAATTTCTGCTTCAAAAAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCT
101442116 TGGCTCACGC
Statistics
Matches: 743, Mismatches: 105, Indels: 243
0.68 0.10 0.22
Matches are distributed among these distances:
74 42 0.06
75 6 0.01
76 23 0.03
77 140 0.19
78 25 0.03
79 60 0.08
80 32 0.04
81 52 0.07
82 29 0.04
83 31 0.04
84 12 0.02
85 9 0.01
86 13 0.02
87 63 0.08
88 16 0.02
89 13 0.02
90 9 0.01
91 18 0.02
92 13 0.02
93 102 0.14
94 35 0.05
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (82 bp):
TTTCAATTTCTGCTTCAAAAAAATCAACTCATATTGCAGAGGTGAGTTGAGCCTCAGGACACGCG
AGGTATTTTCAATTTCT
Found at i:101441385 original size:93 final size:90
Alignment explanation
Indices: 101441215--101441399 Score: 221
Period size: 93 Copynumber: 2.0 Consensus size: 90
101441205 GCTGAGGTAA
* *
101441215 TTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACA
1 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
*
101441280 CGCCGAGGTATTTTAAATTTCCGTT
66 CGCCGAGCTATTTTAAATTTCCGTT
* * *
101441305 TTTCAATTTCTGCCTT-TCAAAATAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGC
1 TTTCAATTTCTG--TTGTC-AAA-AAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-
* * * *
101441368 TCACGCGCTGAGCTATTTTCAATTTCTGTT
61 TCACACGCCGAGCTATTTTAAATTTCCGTT
101441398 TT
1 TT
101441400 CAAAAATCAA
Statistics
Matches: 80, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
90 12 0.15
91 2 0.03
92 7 0.09
93 59 0.74
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (90 bp):
TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
CGCCGAGCTATTTTAAATTTCCGTT
Found at i:101441476 original size:74 final size:74
Alignment explanation
Indices: 101441328--101441472 Score: 220
Period size: 73 Copynumber: 2.0 Consensus size: 74
101441318 CTTTCAAAAT
* * * * *
101441328 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCACACGCCGAGCTATTTTCAATTT
*
101441393 CTGTTTTCA
66 CCGTTTTCA
*
101441402 AAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTTAGATCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCACACGCCGAGCTATTTTCAATTT
101441466 CCGTTTT
66 CCGTTTT
101441473 TCAATTTCTG
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
73 43 0.67
74 21 0.33
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCACACGCCGAGCTATTTTCAATTT
CCGTTTTCA
Found at i:101441555 original size:93 final size:92
Alignment explanation
Indices: 101441401--101441569 Score: 248
Period size: 93 Copynumber: 1.8 Consensus size: 92
101441391 TTCTGTTTTC
*
101441401 AAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTTAGATCACACGCCGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTTAGATCACACGCCGAGCTATTTTCAATTT
*
101441466 CCGTTTTTCAATTTCTGCCTTTCAAAA
66 CCGTCTTTCAATTTCTGCCTTTCAAAA
* * * ** *
101441493 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCATGCGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTTAGATCACACGCCGAGCTATTTTCAATT
*
101441558 TCTGTCTTTCAA
65 TCCGTCTTTCAA
101441570 AAAAATCAAC
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
92 22 0.33
93 45 0.67
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (92 bp):
AAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTTAGATCACACGCCGAGCTATTTTCAATTT
CCGTCTTTCAATTTCTGCCTTTCAAAA
Found at i:101441670 original size:170 final size:169
Alignment explanation
Indices: 101441010--101441970 Score: 1364
Period size: 170 Copynumber: 5.8 Consensus size: 169
101441000 TTCTGTTGTC
* ** *
101441010 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAGACACGCTGAG-TA-TTTCAA
1 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
101441070 -TTCTG-TTTCAAAAAAATCAACTCATATTGC--GAGG-GAGTTGAGCCTCAGG--ACACG-CGA
66 TTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGA
101441127 GGTATTTTCAATTTC---TTTTCAATTTCTG---TTC--
131 GGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAA
* * * * *
101441158 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCA
1 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
* * * *
101441220 ATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCG
65 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCG
* *
101441285 AGGTATTTTAAATTTCCGTTTTTCAATTTCTGCCTTTCAA
130 AGGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAA
*
101441325 AATAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
* *
101441390 TTTCTGTTTTC--AAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTTAGATCACACGCCGA
66 TTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGA
*
101441452 GGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAA
131 GGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAA
*
101441491 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCATGCGCTGAGCTATTTTCAA
1 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
* * * * *
101441556 TTTCTGTCTTTCAAAAAAATCAACTCGTATTGCAAGCGGCGAGTTGAGCCTCAGGTCACACGTCG
66 TTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCG
*
101441621 AGGTATTTTCAATTTTTGTTTTTCAATTTCTGCCTTTCAA
130 AGGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAA
101441661 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
* *
101441726 TTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCG
66 TTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCG
*
101441791 AGGTATTTTCAATTTCTATTTTTCAATTTCTGCCTTTCAA
130 AGGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAA
*
101441831 AAAGAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGACCTATTTTCA
1 AAA-AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCA
* * ** * *
101441896 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCTTCAAATCACACACT
65 ATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCC
101441961 GAGGTATTTT
129 GAGGTATTTT
101441971 TTTATTCAAT
Statistics
Matches: 737, Mismatches: 46, Indels: 37
0.90 0.06 0.05
Matches are distributed among these distances:
148 38 0.05
149 10 0.01
150 2 0.00
151 6 0.01
152 5 0.01
153 23 0.03
155 3 0.00
156 15 0.02
158 5 0.01
159 17 0.02
162 13 0.02
165 3 0.00
166 135 0.18
167 62 0.08
169 47 0.06
170 224 0.30
171 129 0.18
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (169 bp):
AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
TTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGA
GGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTCAA
Found at i:101441721 original size:93 final size:91
Alignment explanation
Indices: 101441549--101441739 Score: 242
Period size: 93 Copynumber: 2.1 Consensus size: 91
101441539 CGCTGAGCTA
* * *
101441549 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCGTATTGCAAGCGGCGAGTTGAGCCTCAGGTCA
1 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCAAGAGGCGAGTTGAGCCTCAGGTCA
*
101441614 CACGTCGAGGTATTTTCAATTTTTGT
66 CACGTCGAGCTATTTTCAATTTTTGT
* * * *
101441640 TTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGC
1 TTTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCAAGAGGCGAGTTGAGCCTCAGG-
*
101441704 TCACGCG-CTGAGCTATTTTCAATTTTTGT
63 TCACACGTC-GAGCTATTTTCAATTTTTGT
*
101441733 CTTTCAA
1 TTTTCAA
101441740 AAAAATCAAC
Statistics
Matches: 86, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
91 18 0.21
92 3 0.03
93 65 0.76
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (91 bp):
TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCAAGAGGCGAGTTGAGCCTCAGGTCA
CACGTCGAGCTATTTTCAATTTTTGT
Found at i:101441892 original size:94 final size:91
Alignment explanation
Indices: 101441719--101441910 Score: 249
Period size: 94 Copynumber: 2.1 Consensus size: 91
101441709 CGCTGAGCTA
* *
101441719 TTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
**
101441784 CACGCCGAGGTATTTTCAATTTCTAT
66 CACGCCGACCTATTTTCAATTTCTAT
* ** *
101441810 TTTTCAATTTCTGCCTTTCAAAAAGAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
1 TTTTCAATTTCTGCCTTTC--AAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA
* * *
101441875 TCACGCGCTGACCTATTTTCAATTTCTGT
63 TCACACGCCGACCTATTTTCAATTTCTAT
*
101441904 CTTTCAA
1 TTTTCAA
101441911 AAAAATCAAC
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
91 17 0.20
93 3 0.03
94 66 0.77
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (91 bp):
TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
CACGCCGACCTATTTTCAATTTCTAT
Found at i:101442016 original size:81 final size:81
Alignment explanation
Indices: 101441911--101442113 Score: 225
Period size: 81 Copynumber: 2.4 Consensus size: 81
101441901 TGTCTTTCAA
*
101441911 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCTTCAAATCACACA-CTGAGGTA-TT-TTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT-AAATCACACATC-GAGGTATTTATTTT
* *
101441973 -TATTCAATTTATATTTTTC
64 CTATTCAAGTTA-A-GTTTC
* * *
101441992 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTAAATCACACATCGAGGTA-TTT----A
*
101442057 TTTTCTTTTCAAGTTAAGTTTC
60 TTTTCTATTCAAGTTAAGTTTC
101442079 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
101442114 CTTGGCTCAC
Statistics
Matches: 105, Mismatches: 7, Indels: 15
0.83 0.06 0.12
Matches are distributed among these distances:
81 46 0.44
82 4 0.04
83 2 0.02
86 1 0.01
87 38 0.36
88 5 0.05
89 9 0.09
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (81 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTAAATCACACATCGAGGTATTTATTTTCT
ATTCAAGTTAAGTTTC
Done.