Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 317 of 325
Found at i:102067022 original size:18 final size:17
Alignment explanation
Indices: 102066990--102067023 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
102066980 TCTATATCAA
*
102066990 TTAAAAATTATATTTTG
1 TTAAAAATTAAATTTTG
102067007 TTAAATAATTAAATTTT
1 TTAAA-AATTAAATTTT
102067024 ATAAGCTGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TTAAAAATTAAATTTTG
Found at i:102069831 original size:17 final size:17
Alignment explanation
Indices: 102069809--102069842 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
102069799 GGTACGCAGG
102069809 GCCTTAGCATCTTAAAT
1 GCCTTAGCATCTTAAAT
102069826 GCCTTAGCATCTTAAAT
1 GCCTTAGCATCTTAAAT
102069843 TAGATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (17 bp):
GCCTTAGCATCTTAAAT
Found at i:102074109 original size:17 final size:17
Alignment explanation
Indices: 102074087--102074121 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
102074077 CTAATTTTAA
102074087 AATAGAGTTATT-ATTTG
1 AATAGAGTT-TTAATTTG
102074104 AATAGAGTTTTAATTTG
1 AATAGAGTTTTAATTTG
102074121 A
1 A
102074122 GTTAATTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.46
Consensus pattern (17 bp):
AATAGAGTTTTAATTTG
Found at i:102074242 original size:22 final size:22
Alignment explanation
Indices: 102074212--102074253 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
102074202 GATATGTTAG
102074212 AAATGC-TTTACTTATAATTTGA
1 AAATGCTTTTA-TTATAATTTGA
*
102074234 AAATTCTTTTATTATAATTT
1 AAATGCTTTTATTATAATTT
102074254 TTGAATTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.52
Consensus pattern (22 bp):
AAATGCTTTTATTATAATTTGA
Found at i:102074493 original size:24 final size:24
Alignment explanation
Indices: 102074461--102074508 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
102074451 TTTATAAGTC
102074461 CCTTTGTAGCACAGTAATAGTGCG
1 CCTTTGTAGCACAGTAATAGTGCG
102074485 CCTTTGTAGCACAGTAATAGTGCG
1 CCTTTGTAGCACAGTAATAGTGCG
102074509 TCCGCGTCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (24 bp):
CCTTTGTAGCACAGTAATAGTGCG
Found at i:102075095 original size:21 final size:23
Alignment explanation
Indices: 102075071--102075112 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
102075061 CTTTTAAAAA
102075071 TAAAAAAAAAT-AA-AATGAAAC
1 TAAAAAAAAATGAACAATGAAAC
102075092 TAAAAAAAAATGAACAATGAA
1 TAAAAAAAAATGAACAATGAA
102075113 GCTTCTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.58
22 2 0.11
23 6 0.32
ACGTcount: A:0.74, C:0.05, G:0.07, T:0.14
Consensus pattern (23 bp):
TAAAAAAAAATGAACAATGAAAC
Found at i:102081182 original size:38 final size:38
Alignment explanation
Indices: 102081127--102081320 Score: 307
Period size: 38 Copynumber: 5.1 Consensus size: 38
102081117 TATTTGATGC
** *
102081127 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
1 ATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATT
*
102081165 ATATCCGGGTTTTATCCCGCAGGCTTTGTGCTGGTATT
1 ATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATT
* * *
102081203 ATATCCGGATTTTATCCTGCAGGCTTCGTGCTGGTATT
1 ATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATT
102081241 ATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATT
1 ATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATT
**
102081279 ATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATT
1 ATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATT
102081317 ATAT
1 ATAT
102081321 TCGAGCTTAA
Statistics
Matches: 145, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 145 1.00
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (38 bp):
ATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATT
Found at i:102082133 original size:86 final size:87
Alignment explanation
Indices: 102082009--102082184 Score: 327
Period size: 86 Copynumber: 2.0 Consensus size: 87
102081999 TAATATATAT
102082009 GTGTAAGATAATATGTGATTTATAAGAAAATGAAATGTGAATATGTGCTCT-ATATATATGAAAT
1 GTGTAAGATAATATGTGATTTATAAGAAAATGAAATGTGAATATGTGCTCTAATATATATGAAAT
102082073 TGAAATGTAGCCAAATGGATAA
66 TGAAATGTAGCCAAATGGATAA
*
102082095 GTGTAAGATGATATGTGATTTATAAGAAAATGAAATGTGAATATGTGCTCTAAATATATATGAAA
1 GTGTAAGATAATATGTGATTTATAAGAAAATGAAATGTGAATATGTGCTCT-AATATATATGAAA
102082160 TTGAAATGTAGCCAAATGGATAA
65 TTGAAATGTAGCCAAATGGATAA
102082183 GT
1 GT
102082185 TATATATGAA
Statistics
Matches: 87, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
86 50 0.57
88 37 0.43
ACGTcount: A:0.43, C:0.05, G:0.20, T:0.32
Consensus pattern (87 bp):
GTGTAAGATAATATGTGATTTATAAGAAAATGAAATGTGAATATGTGCTCTAATATATATGAAAT
TGAAATGTAGCCAAATGGATAA
Found at i:102089217 original size:38 final size:40
Alignment explanation
Indices: 102089167--102089428 Score: 233
Period size: 46 Copynumber: 6.0 Consensus size: 40
102089157 CTGATATGAA
102089167 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-TG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATG
102089206 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----ATG
102089249 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----ATG
*
102089295 AAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACCTGATATGAG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----AT--G
* *
102089343 ATGTGTAAAACCATGGTTGAAAGATACCATAGCAACGTGACATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC----CATG
* **
102089387 AAAAGAATAAGACCATGGTTGAAAGATACCATGGCAA-CATG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATG
102089428 A
1 A
102089429 CAGAAAATAA
Statistics
Matches: 198, Mismatches: 9, Indels: 32
0.83 0.04 0.13
Matches are distributed among these distances:
38 36 0.18
39 1 0.01
41 4 0.02
43 2 0.01
44 1 0.01
46 152 0.77
48 1 0.01
50 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.23
Consensus pattern (40 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATG
Found at i:102089273 original size:46 final size:46
Alignment explanation
Indices: 102089206--102089458 Score: 355
Period size: 46 Copynumber: 5.5 Consensus size: 46
102089196 TGGCAACCTG
102089206 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
102089252 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
102089298 TGTGTAAGACCATGGTTGAAAGATACCATAGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* * * *
102089344 TGTGTAAAACCATGGTTGAAAGATACCATAGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * *
102089390 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
** *
102089436 TAAGTAAGACCATAGTTGAAAGA
1 TGTGTAAGACCATGGTTGAAAGA
102089459 CACTATAGCA
Statistics
Matches: 188, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 187 0.99
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:102089400 original size:138 final size:130
Alignment explanation
Indices: 102089160--102089468 Score: 386
Period size: 138 Copynumber: 2.3 Consensus size: 130
102089150 GTGCTCTCTG
* *
102089160 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTTGA
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACCTGTGTGTAAAACCATGGTTGA
* * * ** *
102089225 AAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
66 AAGATACCATAGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATA
102089290 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACCTGATATGAGATGTGTAAAACC
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACC-----T--G-TGTGTAAAACC
*
102089355 ATGGTTGAAAGATACCATAGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATG
58 ATGGTTGAAAGATACCATAGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATG
*
102089420 GCAACATG
123 GCAACATA
* ** * * *
102089428 ACA-GAAAATAAGTAAGACCATAGTTGAAAGACACTATAGCA
1 ATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATAGCA
102089469 TCACGTCAAA
Statistics
Matches: 154, Mismatches: 16, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
130 43 0.28
135 1 0.01
137 2 0.01
138 108 0.70
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.22
Consensus pattern (130 bp):
ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACCTGTGTGTAAAACCATGGTTGA
AAGATACCATAGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATA
Found at i:102089774 original size:23 final size:25
Alignment explanation
Indices: 102089729--102089775 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
102089719 AATAAATATA
*
102089729 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
102089754 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
102089776 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:102090475 original size:38 final size:39
Alignment explanation
Indices: 102090424--102090580 Score: 241
Period size: 38 Copynumber: 4.1 Consensus size: 39
102090414 ATATTTGATG
* *
102090424 TATATCCGGGTTTTATCCCACAGGCTTCA-TGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTTAGTGCTGGTAT
*
102090462 TATATCTGGGTTTTATCCCGCAGGCTTT-GTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTTAGTGCTGGTAT
102090500 TATATCCGGGTTTTATCCCGCAGG-TTTAGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTTAGTGCTGGTAT
**
102090538 TATATCCGGGTTAAATCCCGCAGGC-TTAGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTTAGTGCTGGTAT
102090576 TATAT
1 TATAT
102090581 TCGAGCTTAA
Statistics
Matches: 110, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
37 3 0.03
38 107 0.97
ACGTcount: A:0.18, C:0.20, G:0.24, T:0.38
Consensus pattern (39 bp):
TATATCCGGGTTTTATCCCGCAGGCTTTAGTGCTGGTAT
Found at i:102094019 original size:12 final size:12
Alignment explanation
Indices: 102094004--102094030 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
102093994 ACTTGACACA
102094004 TTACCAAATTTT
1 TTACCAAATTTT
102094016 TTACCAAATTTT
1 TTACCAAATTTT
102094028 TTA
1 TTA
102094031 TATGTTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (12 bp):
TTACCAAATTTT
Found at i:102096645 original size:87 final size:87
Alignment explanation
Indices: 102096536--102096700 Score: 285
Period size: 87 Copynumber: 1.9 Consensus size: 87
102096526 AAATGATAAT
* *
102096536 ATTATTAAAAGAGTTCTGTTAAATTGAATATATGATATCTTAATTTTCAGTTGTGTCCCTTCCTT
1 ATTATTAAAAGAGTTCTATTAAACTGAATATATGATATCTTAATTTTCAGTTGTGTCCCTTCCTT
102096601 TTTCTATTTATTTCTATGGTCA
66 TTTCTATTTATTTCTATGGTCA
* * *
102096623 ATTATTAAAAGATTTCTATTAAACTGAATATATGATATTTTAATTTTCAGTTGTGTCTCTTCCTT
1 ATTATTAAAAGAGTTCTATTAAACTGAATATATGATATCTTAATTTTCAGTTGTGTCCCTTCCTT
102096688 TTTCTATTTATTT
66 TTTCTATTTATTT
102096701 TTAATGATCG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 73 1.00
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.52
Consensus pattern (87 bp):
ATTATTAAAAGAGTTCTATTAAACTGAATATATGATATCTTAATTTTCAGTTGTGTCCCTTCCTT
TTTCTATTTATTTCTATGGTCA
Found at i:102097961 original size:13 final size:13
Alignment explanation
Indices: 102097943--102097967 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102097933 TGAAAATAAA
102097943 CATGATAACAAAG
1 CATGATAACAAAG
102097956 CATGATAACAAA
1 CATGATAACAAA
102097968 TTTAACCATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.12, T:0.16
Consensus pattern (13 bp):
CATGATAACAAAG
Found at i:102103275 original size:14 final size:14
Alignment explanation
Indices: 102103253--102103283 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
102103243 TAGTTTTTTC
*
102103253 TTTAGAAATTTCTA
1 TTTAAAAATTTCTA
102103267 TTTAAAAATTTCTA
1 TTTAAAAATTTCTA
102103281 TTT
1 TTT
102103284 GTACTCGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (14 bp):
TTTAAAAATTTCTA
Found at i:102109269 original size:24 final size:25
Alignment explanation
Indices: 102109242--102109294 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
102109232 TATTTTTTAC
* *
102109242 ATATT-ATGTAATTTATATAAAACA
1 ATATTAATATAATATATATAAAACA
*
102109266 ATATTAAATATAATATATATAATACA
1 ATATT-AATATAATATATATAAAACA
102109292 ATA
1 ATA
102109295 ACGTAATTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 5 0.21
26 19 0.79
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.40
Consensus pattern (25 bp):
ATATTAATATAATATATATAAAACA
Found at i:102112829 original size:53 final size:53
Alignment explanation
Indices: 102112762--102112921 Score: 216
Period size: 53 Copynumber: 3.0 Consensus size: 53
102112752 TATTCTTATT
* *
102112762 TTATATAATATATTTGAAAATAATAACATATTTATTACCCCCAATTACGACTGAA
1 TTAT-TAA-ATATTTGAAAATAATAATATATTTATTACCCCCAATTACGACTCAA
* * *
102112817 TTCTTAAATATTT-AAATATAATAATGTATTTATTACCCCAAATTACGACTCAA
1 TTATTAAATATTTGAAA-ATAATAATATATTTATTACCCCCAATTACGACTCAA
* *
102112870 TTATTAAATATTTGAATATAATAATATATTTATTA-ACCCAATTACGACTCAA
1 TTATTAAATATTTGAAAATAATAATATATTTATTACCCCCAATTACGACTCAA
102112922 GGATCACAAA
Statistics
Matches: 93, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
52 18 0.19
53 67 0.72
54 5 0.05
55 3 0.03
ACGTcount: A:0.43, C:0.14, G:0.04, T:0.39
Consensus pattern (53 bp):
TTATTAAATATTTGAAAATAATAATATATTTATTACCCCCAATTACGACTCAA
Found at i:102119163 original size:15 final size:15
Alignment explanation
Indices: 102119110--102119164 Score: 71
Period size: 15 Copynumber: 3.9 Consensus size: 15
102119100 TCCACCACCG
*
102119110 GGATATCCTCCACAA
1 GGATATCCTCCTCAA
102119125 GGATA---TCCTCAA
1 GGATATCCTCCTCAA
*
102119137 GGTTATCCTCCTCAA
1 GGATATCCTCCTCAA
102119152 GGATATCCTCCTC
1 GGATATCCTCCTC
102119165 CTTACGCCCC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
12 10 0.29
15 24 0.71
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (15 bp):
GGATATCCTCCTCAA
Found at i:102126547 original size:15 final size:16
Alignment explanation
Indices: 102126511--102126548 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
102126501 GAGCAGTTGC
102126511 AGAAGCAGAAGCTGCA
1 AGAAGCAGAAGCTGCA
*
102126527 A-TAGCAGAAGCTG-A
1 AGAAGCAGAAGCTGCA
102126541 AGAAGCAG
1 AGAAGCAG
102126549 CAAGAGAGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
14 2 0.11
15 16 0.84
16 1 0.05
ACGTcount: A:0.45, C:0.16, G:0.32, T:0.08
Consensus pattern (16 bp):
AGAAGCAGAAGCTGCA
Found at i:102126594 original size:21 final size:21
Alignment explanation
Indices: 102126570--102126609 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
102126560 GAGGTTGCTG
*
102126570 AAGCTGATGCAGAGGCAGCGC
1 AAGCTGATGCAGAAGCAGCGC
**
102126591 AAGCTTTTGCAGAAGCAGC
1 AAGCTGATGCAGAAGCAGC
102126610 AATGAAAACT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.23, G:0.33, T:0.15
Consensus pattern (21 bp):
AAGCTGATGCAGAAGCAGCGC
Found at i:102126927 original size:29 final size:29
Alignment explanation
Indices: 102126894--102126980 Score: 138
Period size: 29 Copynumber: 3.0 Consensus size: 29
102126884 TGTTGACGAT
*
102126894 TTTTGCAGCAGGCACCCAGTCATCATCCC
1 TTTTGCAGCAGGCACCCAGTGATCATCCC
*
102126923 TTTTGCAGCAGGCACCCAGTGATCGTCCC
1 TTTTGCAGCAGGCACCCAGTGATCATCCC
*
102126952 TATTTGTAGCAGGCACCCAGTGATCATCC
1 T-TTTGCAGCAGGCACCCAGTGATCATCC
102126981 TTATTATTTG
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 28 0.53
30 25 0.47
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.25
Consensus pattern (29 bp):
TTTTGCAGCAGGCACCCAGTGATCATCCC
Found at i:102126965 original size:30 final size:30
Alignment explanation
Indices: 102126895--102126985 Score: 139
Period size: 30 Copynumber: 3.1 Consensus size: 30
102126885 GTTGACGATT
*
102126895 TTTGCAGCAGGCACCCAGTCATCATCCCT-
1 TTTGCAGCAGGCACCCAGTGATCATCCCTA
*
102126924 TTTGCAGCAGGCACCCAGTGATCGTCCCTA
1 TTTGCAGCAGGCACCCAGTGATCATCCCTA
* *
102126954 TTTGTAGCAGGCACCCAGTGATCATCCTTA
1 TTTGCAGCAGGCACCCAGTGATCATCCCTA
102126984 TT
1 TT
102126986 ATTTGTAGCC
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
29 27 0.48
30 29 0.52
ACGTcount: A:0.21, C:0.32, G:0.20, T:0.27
Consensus pattern (30 bp):
TTTGCAGCAGGCACCCAGTGATCATCCCTA
Found at i:102129314 original size:16 final size:16
Alignment explanation
Indices: 102129293--102129360 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
102129283 TTTGGTTCGC
102129293 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
102129309 TGTATTGGATTAGATG
1 TGTATTGGATTAGAGG
*
102129325 TGTAATGGATTAGAGG
1 TGTATTGGATTAGAGG
102129341 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
102129357 TGTA
1 TGTA
102129361 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:102129625 original size:14 final size:15
Alignment explanation
Indices: 102129585--102129627 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
102129575 ATTTAAACAT
*
102129585 TATTATTATTAAATA
1 TATTATAATTAAATA
102129600 TATTATAATTAAA-A
1 TATTATAATTAAATA
*
102129614 TA-TATAATTTAATA
1 TATTATAATTAAATA
102129628 AAATTCTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.36
14 4 0.16
15 12 0.48
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
TATTATAATTAAATA
Found at i:102129738 original size:18 final size:18
Alignment explanation
Indices: 102129717--102129764 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
102129707 TTATTATTAA
102129717 ATATATTATAATTAAAAT
1 ATATATTATAATTAAAAT
102129735 ATATAATT-TAA-TAAAAT
1 ATAT-ATTATAATTAAAAT
*
102129752 -TAT-TAATAATTAA
1 ATATATTATAATTAA
102129765 TATTCTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
14 1 0.04
15 3 0.12
16 6 0.23
17 6 0.23
18 7 0.27
19 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATATATTATAATTAAAAT
Found at i:102129745 original size:14 final size:15
Alignment explanation
Indices: 102129696--102129747 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
102129686 ATAAAATATA
102129696 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
102129711 TATTAAATATATTAT
1 AATTAAATATATTAT
102129726 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
102129739 AATTTAATA
1 AATTAAATA
102129748 AAATTATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:102129753 original size:44 final size:43
Alignment explanation
Indices: 102129673--102129756 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 43
102129663 CTCAAATCAT
* *
102129673 AATATATGATACTATAAAATATAAATTAACATAATTATTATTA
1 AATATATGATAATATAAAATATAAATTAACAAAATTATTATTA
* *
102129716 AATATATTATAAT-TAAAATATATAATTTAATAAAATTATTA
1 AATATATGATAATATAAAATATA-AA-TTAACAAAATTATTA
102129757 ATAATTAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 9 0.26
43 13 0.37
44 13 0.37
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (43 bp):
AATATATGATAATATAAAATATAAATTAACAAAATTATTATTA
Found at i:102132085 original size:12 final size:13
Alignment explanation
Indices: 102132057--102132090 Score: 61
Period size: 12 Copynumber: 2.7 Consensus size: 13
102132047 TGGAGAAAGC
102132057 AAAGCAAAGGAAG
1 AAAGCAAAGGAAG
102132070 AAAGCAAAGG-AG
1 AAAGCAAAGGAAG
102132082 AAAGCAAAG
1 AAAGCAAAG
102132091 CAAAGAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.62, C:0.09, G:0.29, T:0.00
Consensus pattern (13 bp):
AAAGCAAAGGAAG
Found at i:102132159 original size:19 final size:19
Alignment explanation
Indices: 102132135--102132171 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
102132125 AATCGGGCGA
102132135 AACAGAAGAGGCAAAGGGG
1 AACAGAAGAGGCAAAGGGG
*
102132154 AACAGAAGAGGCAGAGGG
1 AACAGAAGAGGCAAAGGG
102132172 TAAAACAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.11, G:0.43, T:0.00
Consensus pattern (19 bp):
AACAGAAGAGGCAAAGGGG
Found at i:102133879 original size:57 final size:57
Alignment explanation
Indices: 102133791--102133905 Score: 230
Period size: 57 Copynumber: 2.0 Consensus size: 57
102133781 AAAAATTATA
102133791 ATTTGTTGAGTAGAGTGATAAAAGAGTTCAATACTTTTAAGTAAAGTTTTAAGTTCG
1 ATTTGTTGAGTAGAGTGATAAAAGAGTTCAATACTTTTAAGTAAAGTTTTAAGTTCG
102133848 ATTTGTTGAGTAGAGTGATAAAAGAGTTCAATACTTTTAAGTAAAGTTTTAAGTTCG
1 ATTTGTTGAGTAGAGTGATAAAAGAGTTCAATACTTTTAAGTAAAGTTTTAAGTTCG
102133905 A
1 A
102133906 GTTTTGTGAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (57 bp):
ATTTGTTGAGTAGAGTGATAAAAGAGTTCAATACTTTTAAGTAAAGTTTTAAGTTCG
Found at i:102133903 original size:27 final size:27
Alignment explanation
Indices: 102133815--102133903 Score: 74
Period size: 27 Copynumber: 3.2 Consensus size: 27
102133805 GTGATAAAAG
102133815 AGTTCAATACTTTTAAGTAAAGTTTTA
1 AGTTCAATACTTTTAAGTAAAGTTTTA
* * * **
102133842 AGTTCGAT--TTGTTGAGTAGAGTGATAAAA
1 AGTTCAATACTT-TTAAGTAAAGT--T-TTA
102133871 GAGTTCAATACTTTTAAGTAAAGTTTTA
1 -AGTTCAATACTTTTAAGTAAAGTTTTA
102133899 AGTTC
1 AGTTC
102133904 GAGTTTTGTG
Statistics
Matches: 45, Mismatches: 10, Indels: 14
0.65 0.14 0.20
Matches are distributed among these distances:
25 2 0.04
26 9 0.20
27 12 0.27
28 2 0.04
29 2 0.04
30 7 0.16
31 9 0.20
32 2 0.04
ACGTcount: A:0.35, C:0.07, G:0.18, T:0.40
Consensus pattern (27 bp):
AGTTCAATACTTTTAAGTAAAGTTTTA
Found at i:102136009 original size:3 final size:3
Alignment explanation
Indices: 102136001--102136031 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
102135991 CACAACCTCA
102136001 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
102136032 GTAACAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:102140473 original size:70 final size:69
Alignment explanation
Indices: 102140326--102140479 Score: 175
Period size: 70 Copynumber: 2.2 Consensus size: 69
102140316 GTTGAACACT
* * * *
102140326 AGCAATAAGATGGACACAGGACATTGTTTATGTAGAGGTTATTTTTAAGAAATAAAGTTAATGCA
1 AGCAATAAGATGGACAAAGAACATTGTTTA-GCAGAGGTTATTTTTAAGAAATAAAATTAATGCA
*
102140391 AGCCC
65 AACCC
** * * *
102140396 AATAATAAGATGGACAAAGAACATTGTTTA-CAGAGGCTTCTTTTTAAGACAATAAAATTAGTTC
1 AGCAATAAGATGGACAAAGAACATTGTTTAGCAGAGG-TTATTTTTAAGA-AATAAAATTAATGC
*
102140460 AAATCC
64 AAACCC
102140466 AGCAATAAGATGGA
1 AGCAATAAGATGGA
102140480 GGTGGAAATT
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
68 5 0.07
69 11 0.16
70 53 0.77
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.28
Consensus pattern (69 bp):
AGCAATAAGATGGACAAAGAACATTGTTTAGCAGAGGTTATTTTTAAGAAATAAAATTAATGCAA
ACCC
Found at i:102143963 original size:17 final size:20
Alignment explanation
Indices: 102143933--102143974 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
102143923 ATTCAACATA
102143933 TTTTAATAGTAAAAT-ATTT
1 TTTTAATAGTAAAATAATTT
102143952 TTTTAA-AG-AAAATAATTT
1 TTTTAATAGTAAAATAATTT
102143970 TTTTA
1 TTTTA
102143975 GCACTTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.23
18 11 0.50
19 6 0.27
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (20 bp):
TTTTAATAGTAAAATAATTT
Found at i:102150730 original size:18 final size:20
Alignment explanation
Indices: 102150707--102150752 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
102150697 GTATTATTGT
*
102150707 ATAAATTAT-CGAT-AATAC
1 ATAAATTATACCATCAATAC
102150725 ATAAATTATACCATCAATAC
1 ATAAATTATACCATCAATAC
102150745 ATTAAATT
1 A-TAAATT
102150753 TAACCCATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 9 0.38
19 3 0.12
20 6 0.25
21 6 0.25
ACGTcount: A:0.50, C:0.13, G:0.02, T:0.35
Consensus pattern (20 bp):
ATAAATTATACCATCAATAC
Found at i:102153125 original size:16 final size:16
Alignment explanation
Indices: 102153104--102153152 Score: 89
Period size: 16 Copynumber: 3.1 Consensus size: 16
102153094 TTCGCTATAT
102153104 TGGATTAGAGGTGTAA
1 TGGATTAGAGGTGTAA
*
102153120 TGGATTAGAGGTGTAT
1 TGGATTAGAGGTGTAA
102153136 TGGATTAGAGGTGTAA
1 TGGATTAGAGGTGTAA
102153152 T
1 T
102153153 AGCAAATCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGGATTAGAGGTGTAA
Found at i:102153404 original size:16 final size:16
Alignment explanation
Indices: 102153367--102153408 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
102153357 TTAATCATAT
*
102153367 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
102153383 TT-AAATATATTATAA
1 TTAAAATATATTATAA
102153398 TTAAAATATAT
1 TTAAAATATAT
102153409 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:102153415 original size:14 final size:15
Alignment explanation
Indices: 102153376--102153417 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
102153366 TTTAAACATA
*
102153376 ATTATTATTAAATAT
1 ATTATAATTAAATAT
102153391 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
102153405 A-TATAATTTAATA
1 ATTATAATTAAATA
102153418 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:102153535 original size:14 final size:15
Alignment explanation
Indices: 102153486--102153656 Score: 60
Period size: 15 Copynumber: 11.6 Consensus size: 15
102153476 ATAAAATATA
102153486 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
102153501 TATTAAATATATTAT
1 AATTAAATATATTAT
*
102153516 AATTAAAATATATAATTT
1 AATT-AAATATAT--TAT
* * *
102153534 AATAAAAT-TCTTAA
1 AATTAAATATATTAT
102153548 AATT-AATATTATTAT
1 AATTAAATA-TATTAT
* * *
102153563 -A-TGAATTTACTCA-
1 AATTAAATATA-TTAT
* *
102153576 AATCATAATATATGAT
1 AATTA-AATATATTAT
*
102153592 ACTATAAA-ATA-TA-
1 AAT-TAAATATATTAT
102153605 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
102153620 TATTAAATATATTAT
1 AATTAAATATATTAT
102153635 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
102153648 AATTTAATA
1 AATTAAATA
102153657 AAATTATTAA
Statistics
Matches: 114, Mismatches: 23, Indels: 39
0.65 0.13 0.22
Matches are distributed among these distances:
12 3 0.03
13 19 0.17
14 25 0.22
15 38 0.33
16 19 0.17
17 5 0.04
18 5 0.04
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:102153606 original size:119 final size:120
Alignment explanation
Indices: 102153370--102153690 Score: 610
Period size: 119 Copynumber: 2.7 Consensus size: 120
102153360 ATCATATTTA
102153370 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
102153435 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
102153490 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAA-AATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
102153554 TATTATTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
*
102153609 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
102153674 TATTCTTATAT-AATTTA
66 TATTCTTATATGAATTTA
102153691 ATAAAACAAT
Statistics
Matches: 197, Mismatches: 3, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
119 123 0.62
120 74 0.38
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:102153647 original size:18 final size:18
Alignment explanation
Indices: 102153626--102153673 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
102153616 TTATTATTAA
102153626 ATATATTATAATTAAAAT
1 ATATATTATAATTAAAAT
102153644 ATATAATT-TAA-TAAAAT
1 ATAT-ATTATAATTAAAAT
*
102153661 -TAT-TAATAATTAA
1 ATATATTATAATTAA
102153674 TATTCTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
14 1 0.04
15 3 0.12
16 6 0.23
17 6 0.23
18 7 0.27
19 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATATATTATAATTAAAAT
Found at i:102153663 original size:44 final size:43
Alignment explanation
Indices: 102153582--102153665 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 43
102153572 CTCAAATCAT
* *
102153582 AATATATGATACTATAAAATATAAATTAACATAATTATTATTA
1 AATATATGATAATATAAAATATAAATTAACAAAATTATTATTA
* *
102153625 AATATATTATAAT-TAAAATATATAATTTAATAAAATTATTA
1 AATATATGATAATATAAAATATA-AA-TTAACAAAATTATTA
102153666 ATAATTAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 9 0.26
43 13 0.37
44 13 0.37
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (43 bp):
AATATATGATAATATAAAATATAAATTAACAAAATTATTATTA
Found at i:102155994 original size:12 final size:13
Alignment explanation
Indices: 102155966--102155999 Score: 61
Period size: 12 Copynumber: 2.7 Consensus size: 13
102155956 TGGAGAAAGC
102155966 AAAGCAAAGGAAG
1 AAAGCAAAGGAAG
102155979 AAAGCAAAGG-AG
1 AAAGCAAAGGAAG
102155991 AAAGCAAAG
1 AAAGCAAAG
102156000 CAAAGAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.62, C:0.09, G:0.29, T:0.00
Consensus pattern (13 bp):
AAAGCAAAGGAAG
Found at i:102156068 original size:19 final size:19
Alignment explanation
Indices: 102156044--102156080 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
102156034 AATCGGGCGA
102156044 AACAGAAGAGGCAAAGGGG
1 AACAGAAGAGGCAAAGGGG
*
102156063 AACAGAAGAGGCAGAGGG
1 AACAGAAGAGGCAAAGGG
102156081 TAAAACAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.11, G:0.43, T:0.00
Consensus pattern (19 bp):
AACAGAAGAGGCAAAGGGG
Found at i:102156695 original size:16 final size:15
Alignment explanation
Indices: 102156663--102156691 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
102156653 TATCTGTCTT
102156663 TTTTTTAAATATTTA
1 TTTTTTAAATATTTA
102156678 TTTTTTAAATATTT
1 TTTTTTAAATATTT
102156692 TATTATAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTTAAATATTTA
Found at i:102170046 original size:40 final size:41
Alignment explanation
Indices: 102169991--102170087 Score: 151
Period size: 40 Copynumber: 2.4 Consensus size: 41
102169981 TAGGTATGCC
* *
102169991 CTTGTCATGTCCACCGCCACTGGCACGCCTGCTG-CACTGG
1 CTTGTCATGTCCACCGCCACTGGCACGCCTACTGCCACCGG
*
102170031 CTTGTCATGTCCACCGCCACTGGCGCGCCTACTGCCACCGG
1 CTTGTCATGTCCACCGCCACTGGCACGCCTACTGCCACCGG
*
102170072 CTTGTCACGTCCACCG
1 CTTGTCATGTCCACCG
102170088 TCTTCAAGTT
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
40 32 0.62
41 20 0.38
ACGTcount: A:0.12, C:0.42, G:0.24, T:0.22
Consensus pattern (41 bp):
CTTGTCATGTCCACCGCCACTGGCACGCCTACTGCCACCGG
Found at i:102171296 original size:13 final size:14
Alignment explanation
Indices: 102171280--102171315 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
102171270 CAATCTCATA
102171280 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
102171293 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
102171306 TCTC-ATTTCA
1 TCTCAATTTCA
102171316 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:102171305 original size:18 final size:19
Alignment explanation
Indices: 102171267--102171307 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
102171257 TGGTTCATGT
102171267 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
102171286 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
102171304 TTTC
1 TTTC
102171308 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:102171497 original size:39 final size:40
Alignment explanation
Indices: 102171454--102171565 Score: 93
Period size: 39 Copynumber: 2.8 Consensus size: 40
102171444 TCGGATAGTT
* *
102171454 CGAAGCAATATTTGACACCCAGTGTCTCATCG-GCCTAAC
1 CGAAGAAATATTTGACACCCAGTGTCTCATCGAACCTAAC
* * ** ** * * *
102171493 CGAAGTAA-AGTTGGTACCCAGTACCTTATCGAATCTATC
1 CGAAGAAATATTTGACACCCAGTGTCTCATCGAACCTAAC
*
102171532 CGAAGAAATATAGTGACACCCAGTGTCTCATCGA
1 CGAAGAAATAT-TTGACACCCAGTGTCTCATCGA
102171566 CTCGAGGTCG
Statistics
Matches: 52, Mismatches: 18, Indels: 4
0.70 0.24 0.05
Matches are distributed among these distances:
38 17 0.33
39 18 0.35
40 1 0.02
41 16 0.31
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (40 bp):
CGAAGAAATATTTGACACCCAGTGTCTCATCGAACCTAAC
Found at i:102171831 original size:18 final size:19
Alignment explanation
Indices: 102171805--102171843 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
102171795 TTTCAATTTA
102171805 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
102171824 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
102171842 AT
1 AT
102171844 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:102173154 original size:5 final size:5
Alignment explanation
Indices: 102173144--102173200 Score: 62
Period size: 5 Copynumber: 11.0 Consensus size: 5
102173134 TTACTTATTT
* *
102173144 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
102173192 ATAT- ATATA
1 ATATA ATATA
102173201 TTTTAACACA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 7 0.16
7 4 0.09
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:102173160 original size:12 final size:12
Alignment explanation
Indices: 102173143--102173198 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
102173133 TTTACTTATT
102173143 TATATAATATAA
1 TATATAATATAA
102173155 TATATAATATAATA
1 TATATAATAT-A-A
102173169 TACTATAATATAA
1 TA-TATAATATAA
*
102173182 TA-ATAATTTAA
1 TATATAATATAA
102173193 TATATA
1 TATATA
102173199 TATTTTAACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:102173213 original size:26 final size:26
Alignment explanation
Indices: 102173145--102173200 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
102173135 TACTTATTTA
*
102173145 TATAATATAATATATAATATAATATAC
1 TATAATATAACA-ATAATATAATATAC
* *
102173172 TATAATATAATAATAATTTAATATA-
1 TATAATATAACAATAATATAATATAC
102173197 TATA
1 TATA
102173201 TTTTAACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 4 0.14
26 12 0.43
27 12 0.43
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
TATAATATAACAATAATATAATATAC
Found at i:102173738 original size:65 final size:65
Alignment explanation
Indices: 102173647--102173776 Score: 215
Period size: 65 Copynumber: 2.0 Consensus size: 65
102173637 TCCCTTTTGC
* * *
102173647 TTTTATAATTAGACGTGGGCGTTCTCCTTTTCCAAAGGCTTTCTTCCCTTTCCTTCTCCAGCAAG
1 TTTTATAATTACACGTGGGCGCTCTCCTTTTCCAAAGGCTTTCTTCCCTCTCCTTCTCCAGCAAG
* *
102173712 TTTTTTAATTACACGTTGGCGCTCTCCTTTTCCAAAGGCTTTCTTCCCTCTCCTTCTCCAGCAAG
1 TTTTATAATTACACGTGGGCGCTCTCCTTTTCCAAAGGCTTTCTTCCCTCTCCTTCTCCAGCAAG
102173777 CATGGAAGAG
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 60 1.00
ACGTcount: A:0.16, C:0.30, G:0.14, T:0.40
Consensus pattern (65 bp):
TTTTATAATTACACGTGGGCGCTCTCCTTTTCCAAAGGCTTTCTTCCCTCTCCTTCTCCAGCAAG
Found at i:102180517 original size:29 final size:29
Alignment explanation
Indices: 102180470--102180538 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
102180460 ATTAATAATT
*
102180470 TATAAGAATTAGATTAAATAAAAATTTAT-G
1 TATAA-AATTAGATAAAATAAAAATTT-TCG
* * *
102180500 TATAAAATTATATAAAATTAATATTTTCG
1 TATAAAATTAGATAAAATAAAAATTTTCG
102180529 TATAAAATTA
1 TATAAAATTA
102180539 CATATTAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 1 0.03
29 28 0.82
30 5 0.15
ACGTcount: A:0.52, C:0.01, G:0.06, T:0.41
Consensus pattern (29 bp):
TATAAAATTAGATAAAATAAAAATTTTCG
Found at i:102191900 original size:9 final size:9
Alignment explanation
Indices: 102191873--102191902 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
102191863 TTTTAAAATT
102191873 AAAATTATTA
1 AAAATTA-TA
102191883 AAAATTATA
1 AAAATTATA
102191892 AAAATTATA
1 AAAATTATA
102191901 AA
1 AA
102191903 TTAATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 13 0.65
10 7 0.35
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
AAAATTATA
Found at i:102193529 original size:42 final size:42
Alignment explanation
Indices: 102193450--102193532 Score: 105
Period size: 45 Copynumber: 1.9 Consensus size: 42
102193440 CTAATTAATT
*
102193450 TATTTTTTTCAAATCATTATAATAGAATATTTTTTTCAAATATA
1 TATTTTTTCCAAATCATTATAATAGAATA--TTTTTCAAATATA
* *
102193494 TATTTTTTCCGAACTCATTATGATAGAATA-TTTTCAAAT
1 TATTTTTTCC-AAATCATTATAATAGAATATTTTTCAAAT
102193533 CAAATAAAGC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 9 0.26
44 9 0.26
45 17 0.49
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.49
Consensus pattern (42 bp):
TATTTTTTCCAAATCATTATAATAGAATATTTTTCAAATATA
Found at i:102195626 original size:61 final size:61
Alignment explanation
Indices: 102195555--102195679 Score: 250
Period size: 61 Copynumber: 2.0 Consensus size: 61
102195545 GTTTTAGTCA
102195555 AAATTTAAATTAAAAATAATAATTAGACTATTCTTTAATGTTTAATGGTCAAATTTAACTC
1 AAATTTAAATTAAAAATAATAATTAGACTATTCTTTAATGTTTAATGGTCAAATTTAACTC
102195616 AAATTTAAATTAAAAATAATAATTAGACTATTCTTTAATGTTTAATGGTCAAATTTAACTC
1 AAATTTAAATTAAAAATAATAATTAGACTATTCTTTAATGTTTAATGGTCAAATTTAACTC
102195677 AAA
1 AAA
102195680 AGAATAATAA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 64 1.00
ACGTcount: A:0.46, C:0.08, G:0.06, T:0.40
Consensus pattern (61 bp):
AAATTTAAATTAAAAATAATAATTAGACTATTCTTTAATGTTTAATGGTCAAATTTAACTC
Found at i:102195653 original size:30 final size:30
Alignment explanation
Indices: 102195558--102195653 Score: 72
Period size: 30 Copynumber: 3.2 Consensus size: 30
102195548 TTAGTCAAAA
102195558 TTTAAATTAAAAATAATAATTAGACTATTC
1 TTTAAATTAAAAATAATAATTAGACTATTC
* *** * **
102195588 TTTAATGTTTAATGGTCAA-ATTTA-ACTCA-AA
1 TTTAA--ATTAAAAAT-AATAATTAGACT-ATTC
102195619 TTTAAATTAAAAATAATAATTAGACTATTC
1 TTTAAATTAAAAATAATAATTAGACTATTC
102195649 TTTAA
1 TTTAA
102195654 TGTTTAATGG
Statistics
Matches: 45, Mismatches: 14, Indels: 14
0.62 0.19 0.19
Matches are distributed among these distances:
28 2 0.04
29 10 0.22
30 13 0.29
31 8 0.18
32 10 0.22
33 2 0.04
ACGTcount: A:0.46, C:0.07, G:0.05, T:0.42
Consensus pattern (30 bp):
TTTAAATTAAAAATAATAATTAGACTATTC
Found at i:102201680 original size:17 final size:17
Alignment explanation
Indices: 102201658--102201694 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
102201648 AAAATATATA
102201658 TAAGCACCCCTCTTTTT
1 TAAGCACCCCTCTTTTT
102201675 TAAGCACCCCTCTTTTT
1 TAAGCACCCCTCTTTTT
102201692 TAA
1 TAA
102201695 TTTCTTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.22, C:0.32, G:0.05, T:0.41
Consensus pattern (17 bp):
TAAGCACCCCTCTTTTT
Found at i:102223113 original size:49 final size:48
Alignment explanation
Indices: 102223041--102223140 Score: 182
Period size: 49 Copynumber: 2.1 Consensus size: 48
102223031 AATGACTTGA
*
102223041 TTGCTATAATAATGATACTTTTAGAATTCAATTAAAAATATTTTAAAAT
1 TTGCTATAATAATGATAATTTTAGAATTCAATT-AAAATATTTTAAAAT
102223090 TTGCTATAATAATGATAATTTTAGAATTCAATTAAAATATTTTAAAAT
1 TTGCTATAATAATGATAATTTTAGAATTCAATTAAAATATTTTAAAAT
102223138 TTG
1 TTG
102223141 AAGAGCAATT
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 18 0.36
49 32 0.64
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (48 bp):
TTGCTATAATAATGATAATTTTAGAATTCAATTAAAATATTTTAAAAT
Found at i:102223133 original size:21 final size:21
Alignment explanation
Indices: 102223059--102223138 Score: 61
Period size: 21 Copynumber: 3.5 Consensus size: 21
102223049 ATAATGATAC
*
102223059 TTTTAGAATTCAATTAAAAATA
1 TTTTAAAATTCAATT-AAAATA
* *
102223081 TTTTAAAATTTGCTATAATAATGATAA
1 TTTTAAAA-TT-C-A-ATTAA-AAT-A
*
102223108 TTTTAGAATTCAATTAAAATA
1 TTTTAAAATTCAATTAAAATA
102223129 TTTTAAAATT
1 TTTTAAAATT
102223139 TGAAGAGCAA
Statistics
Matches: 45, Mismatches: 7, Indels: 13
0.69 0.11 0.20
Matches are distributed among these distances:
21 10 0.22
22 9 0.20
23 6 0.13
24 2 0.04
25 4 0.09
26 6 0.13
27 8 0.18
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.45
Consensus pattern (21 bp):
TTTTAAAATTCAATTAAAATA
Found at i:102228133 original size:9 final size:9
Alignment explanation
Indices: 102228119--102228143 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
102228109 TAGAGAGTTT
102228119 TTTTTTTTC
1 TTTTTTTTC
102228128 TTTTTTTTC
1 TTTTTTTTC
102228137 TTTTTTT
1 TTTTTTT
102228144 CTCACATCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:102229009 original size:14 final size:14
Alignment explanation
Indices: 102228990--102229036 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
102228980 GTTTCAATTT
102228990 TTAAAATATAAAGA
1 TTAAAATATAAAGA
* *
102229004 TTAAAAATTTCAA-A
1 TT-AAAATATAAAGA
*
102229018 TTAAAATATAAAGG
1 TTAAAATATAAAGA
102229032 TTAAA
1 TTAAA
102229037 TTCACAATTG
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
13 8 0.31
14 10 0.38
15 8 0.31
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (14 bp):
TTAAAATATAAAGA
Found at i:102230679 original size:31 final size:31
Alignment explanation
Indices: 102230601--102230682 Score: 96
Period size: 31 Copynumber: 2.6 Consensus size: 31
102230591 TACAAGCCAG
* *
102230601 TGACTTAAATAAAAACTTTT-AGATAGTTAAA
1 TGACTTAAATGAAAATTTTTGA-ATAGTTAAA
*
102230632 TGACTTAAATGAAAATTTTTGAATAGTTTAA
1 TGACTTAAATGAAAATTTTTGAATAGTTAAA
*
102230663 TGA-TTAAATTGTAAATTTTT
1 TGACTTAAA-TGAAAATTTTT
102230683 TAATTAAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
30 5 0.11
31 39 0.87
32 1 0.02
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.43
Consensus pattern (31 bp):
TGACTTAAATGAAAATTTTTGAATAGTTAAA
Found at i:102233291 original size:19 final size:20
Alignment explanation
Indices: 102233255--102233301 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
102233245 TTCCAACAAA
* *
102233255 AAAAATTCAGAATAATTT-T
1 AAAAATTTAAAATAATTTAT
102233274 CAAAAATTTAAAAT-ATTTAT
1 -AAAAATTTAAAATAATTTAT
102233294 AAAAATTT
1 AAAAATTT
102233302 CATAATTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.38
Consensus pattern (20 bp):
AAAAATTTAAAATAATTTAT
Found at i:102233489 original size:16 final size:16
Alignment explanation
Indices: 102233468--102233498 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
102233458 TTTGAAAGAA
102233468 TTTCAAATATATATGG
1 TTTCAAATATATATGG
*
102233484 TTTCAAATTTATATG
1 TTTCAAATATATATG
102233499 CTCTAATATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGG
Found at i:102237933 original size:18 final size:19
Alignment explanation
Indices: 102237876--102237939 Score: 71
Period size: 18 Copynumber: 3.4 Consensus size: 19
102237866 ATTTTTAATA
102237876 TTAATTTTGATATCTTATAT
1 TTAATTTTGATAT-TTATAT
* *
102237896 TT-TTTTTCA-ATTTAGTAT
1 TTAATTTTGATATTTA-TAT
102237914 TTAATTTTGATATTTA-AT
1 TTAATTTTGATATTTATAT
102237932 TTAATTTT
1 TTAATTTT
102237940 TCGATCAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
17 3 0.08
18 17 0.46
19 10 0.27
20 7 0.19
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (19 bp):
TTAATTTTGATATTTATAT
Found at i:102244849 original size:46 final size:48
Alignment explanation
Indices: 102244745--102244864 Score: 154
Period size: 48 Copynumber: 2.5 Consensus size: 48
102244735 TGTCTTCGAC
** * *
102244745 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
* * *
102244793 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
*
102244839 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
102244865 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 27 0.43
47 1 0.02
48 35 0.56
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:102245509 original size:14 final size:14
Alignment explanation
Indices: 102245490--102245529 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
102245480 TTGATTGGCA
102245490 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
102245504 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
102245518 GGAAAATGTTTT
1 GTAAAATGTTTT
102245530 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:102245538 original size:20 final size:20
Alignment explanation
Indices: 102245513--102245552 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
102245503 CGTAAAATGA
*
102245513 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
102245533 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
102245553 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:102245542 original size:34 final size:35
Alignment explanation
Indices: 102245498--102245564 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
102245488 CAGTAAAATG
*
102245498 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
102245532 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
102245565 CTAGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:102245676 original size:20 final size:20
Alignment explanation
Indices: 102245651--102245689 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
102245641 GTTTTTACAT
102245651 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
102245671 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
102245690 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:102245749 original size:15 final size:15
Alignment explanation
Indices: 102245720--102245772 Score: 52
Period size: 17 Copynumber: 3.2 Consensus size: 15
102245710 TATTGCAATG
*
102245720 ATTTATTTATAAATAA
1 ATTT-TTTATTAATAA
102245736 ATTTTTTATTAATAAA
1 ATTTTTTATTAAT-AA
102245752 AGTTTTTTATCTAATTAA
1 A-TTTTTTAT-TAA-TAA
102245770 ATT
1 ATT
102245773 CCAAATGTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
15 8 0.25
16 7 0.22
17 10 0.31
18 6 0.19
19 1 0.03
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (15 bp):
ATTTTTTATTAATAA
Found at i:102245963 original size:14 final size:14
Alignment explanation
Indices: 102245944--102245983 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
102245934 TTGATTGCCA
102245944 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
102245958 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
102245972 GGAAAATGTTTT
1 GTAAAATGTTTT
102245984 ACTTTTCTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:102248822 original size:18 final size:18
Alignment explanation
Indices: 102248801--102248851 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
102248791 AGGAATGAAG
102248801 GAAGGGAGAAGAATGGAT
1 GAAGGGAGAAGAATGGAT
*** *
102248819 GAAGGGAGCTTACTGGAT
1 GAAGGGAGAAGAATGGAT
102248837 GAAGGGAGAAGAATG
1 GAAGGGAGAAGAATG
102248852 CCTGAGAGCT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.39, C:0.04, G:0.43, T:0.14
Consensus pattern (18 bp):
GAAGGGAGAAGAATGGAT
Found at i:102251801 original size:19 final size:15
Alignment explanation
Indices: 102251763--102251793 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
102251753 ATAATATTTC
102251763 TATTAATTTATTTAA
1 TATTAATTTATTTAA
102251778 TATTAATTTATTTAA
1 TATTAATTTATTTAA
102251793 T
1 T
102251794 TTGAATTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTAATTTATTTAA
Found at i:102253405 original size:8 final size:8
Alignment explanation
Indices: 102253392--102253433 Score: 84
Period size: 8 Copynumber: 5.2 Consensus size: 8
102253382 GATTTATGAA
102253392 CATTTTCC
1 CATTTTCC
102253400 CATTTTCC
1 CATTTTCC
102253408 CATTTTCC
1 CATTTTCC
102253416 CATTTTCC
1 CATTTTCC
102253424 CATTTTCC
1 CATTTTCC
102253432 CA
1 CA
102253434 AGTTTAATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.14, C:0.38, G:0.00, T:0.48
Consensus pattern (8 bp):
CATTTTCC
Found at i:102261201 original size:28 final size:29
Alignment explanation
Indices: 102261169--102261240 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 29
102261159 TCAGTCGAGG
102261169 TCGGTTAATAATTTTTTG-AAAGTTTGAT
1 TCGGTTAATAATTTTTTGAAAAGTTTGAT
* *
102261197 TCGGTTAAT-TTTTTTTGAAAAAATTTTGAT
1 TCGGTTAATAATTTTTTG--AAAAGTTTGAT
*
102261227 TCGGTTAACAATTT
1 TCGGTTAATAATTT
102261241 AAAAGGGTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 7 0.19
28 9 0.25
30 17 0.47
31 3 0.08
ACGTcount: A:0.29, C:0.06, G:0.15, T:0.50
Consensus pattern (29 bp):
TCGGTTAATAATTTTTTGAAAAGTTTGAT
Found at i:102261877 original size:6 final size:6
Alignment explanation
Indices: 102261866--102261892 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
102261856 AGAAATTGAT
102261866 GCTCAA GCTCAA GCTCAA GCTCAA GCT
1 GCTCAA GCTCAA GCTCAA GCTCAA GCT
102261893 TGTCACTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.33, G:0.19, T:0.19
Consensus pattern (6 bp):
GCTCAA
Found at i:102266198 original size:30 final size:28
Alignment explanation
Indices: 102266130--102266198 Score: 68
Period size: 32 Copynumber: 2.3 Consensus size: 28
102266120 AGAATTTCTA
* *
102266130 TAAATTTTGAGGGTTAAGTTAAAATTTT
1 TAAATTTTGAGGGTTAAGTAAAAAATTT
102266158 TAAAAGTTTTGAAAGGGTTAA-TGAAAAAATTT
1 T-AAA-TTTTG--AGGGTTAAGT-AAAAAATTT
102266190 TAAATTTTG
1 TAAATTTTG
102266199 TTTCTTGGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
28 1 0.03
29 3 0.09
30 10 0.29
31 4 0.12
32 16 0.47
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.42
Consensus pattern (28 bp):
TAAATTTTGAGGGTTAAGTAAAAAATTT
Found at i:102267042 original size:30 final size:30
Alignment explanation
Indices: 102267008--102267095 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 30
102266998 CTTAAAAAAA
*
102267008 TTTGAAAGCTCTAACTAAAATTTTTAAACT
1 TTTGAAAGCTCTAATTAAAATTTTTAAACT
* * *
102267038 TTTGAAAG-TTTAATTAGAAATTTTAAAAGT
1 TTTGAAAGCTCTAATTA-AAATTTTTAAACT
* *
102267068 TTTGAAGGAC-CTAATTAAAATATTTAAA
1 TTTGAAAG-CTCTAATTAAAATTTTTAAA
102267096 AAATTTGGAA
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
29 6 0.13
30 35 0.74
31 6 0.13
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (30 bp):
TTTGAAAGCTCTAATTAAAATTTTTAAACT
Found at i:102271078 original size:40 final size:40
Alignment explanation
Indices: 102270977--102271109 Score: 232
Period size: 40 Copynumber: 3.4 Consensus size: 40
102270967 CTTATAGTCT
*
102270977 GCAGGCTTTGTGCTGGCAATAGATATCCGGGTTAAATCCC
1 GCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATCCC
*
102271017 TCAGGC-TTGTGCTGGTAATAGATATCCGGGTTAAATCCC
1 GCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATCCC
*
102271056 GCAGGCTTTGTGCTGGTAATAGATATCCGGATTAAATCCC
1 GCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATCCC
102271096 GCAGGCTTTGTGCT
1 GCAGGCTTTGTGCT
102271110 AGAAATTGGA
Statistics
Matches: 88, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
39 37 0.42
40 51 0.58
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (40 bp):
GCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATCCC
Found at i:102280113 original size:13 final size:13
Alignment explanation
Indices: 102280095--102280119 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102280085 ACTTATATAA
102280095 AAAAAATAAAAAT
1 AAAAAATAAAAAT
102280108 AAAAAATAAAAA
1 AAAAAATAAAAA
102280120 CTCAACACTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:102285554 original size:203 final size:211
Alignment explanation
Indices: 102285186--102285755 Score: 728
Period size: 203 Copynumber: 2.7 Consensus size: 211
102285176 TATCAAATGT
* * * *
102285186 GACAGTAAGACTTCAGAACCATACGTTCTGTGGGTTTTAAGGAATAAACAATTTAAGCCAGCATC
1 GACAATAAGACTTCAGAACCATACGTTCTGTGGTTTTTAACGAATAAACAATTTAAGCCAACATC
* * * *
102285251 TTAATTTCATTTAGACAACACATGAAATGCCAATAACCAACAAGATCATCACCTTGCAAGGACAA
66 TTAATTCCATTTAGAGAACACATGAAATGCCAATAAACAACAAGATCATCACATTGCAAGG--AA
*
102285316 TCAATAAGCACACTTAACAATATGCAGCCACTCCATGGACCATACTAATCAAACG-CCTTTAACA
129 TCAATAAGCACACTTAACAATACGCAGCCACTCCATGGACCATACTAATCAAA-GTCCTTTAACA
102285380 CCATA-AC-AAGACC-A-A
193 CCATAGACTAAGACCAATA
* * * * * * * **
102285395 -ACAATAAGACTTCAAAACTATATGTACTGTAGTTTTTAATGAATAAACTACGTAAGCCAACATC
1 GACAATAAGACTTCAGAACCATACGTTCTGTGGTTTTTAACGAATAAACAATTTAAGCCAACATC
* * * * *
102285459 -TAAATCCATTTAGAGAACATATAAAATGCCAATAATCAACAGGATCATCACATTGCATA-G-A-
66 TTAATTCCATTTAGAGAACACATGAAATGCCAATAAACAACAAGATCATCACATTGCA-AGGAAT
*
102285520 CAATAAGCACACTTAATAATACGCAGCCACTCCATGGACCATACTAATCAAAGTCCTTTAACACC
130 CAATAAGCACACTTAACAATACGCAGCCACTCCATGGACCATACTAATCAAAGTCCTTTAACACC
* *
102285585 ATAGCCTATGACCAAATA
195 ATAGACTAAGACC-AATA
*
102285603 TGACAATAAGACTTCAGAACCATACATTCTGTGGTTTTTAACGAATAAACAATTTAAGCCAACAT
1 -GACAATAAGACTTCAGAACCATACGTTCTGTGGTTTTTAACGAATAAACAATTTAAGCCAACAT
* *
102285668 CTTAATTCTATTTAGAGAACACATGAAATGCCAATAAACAACAAGATCATCACATTGCAATGACT
65 CTTAATTCCATTTAGAGAACACATGAAATGCCAATAAACAACAAGATCATCACATTGCAAGGA--
*
102285733 ATCAATAATCACACTTAACAATA
128 ATCAATAAGCACACTTAACAATA
102285756 AAGAAAATAC
Statistics
Matches: 304, Mismatches: 42, Indels: 24
0.82 0.11 0.06
Matches are distributed among these distances:
202 1 0.00
203 64 0.21
204 2 0.01
205 5 0.02
207 51 0.17
208 54 0.18
210 55 0.18
211 52 0.17
214 1 0.00
215 19 0.06
ACGTcount: A:0.42, C:0.22, G:0.11, T:0.25
Consensus pattern (211 bp):
GACAATAAGACTTCAGAACCATACGTTCTGTGGTTTTTAACGAATAAACAATTTAAGCCAACATC
TTAATTCCATTTAGAGAACACATGAAATGCCAATAAACAACAAGATCATCACATTGCAAGGAATC
AATAAGCACACTTAACAATACGCAGCCACTCCATGGACCATACTAATCAAAGTCCTTTAACACCA
TAGACTAAGACCAATA
Found at i:102287405 original size:31 final size:31
Alignment explanation
Indices: 102287370--102287434 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
102287360 AATAGCCCAA
*
102287370 TGACTTAAATAAAAACTTTTGTATAGTTTAG
1 TGACTTAAATAAAAACTTTTGAATAGTTTAG
*
102287401 TGACTTAAATAAAAACTTTTGAATGGTTTAG
1 TGACTTAAATAAAAACTTTTGAATAGTTTAG
102287432 TGA
1 TGA
102287435 TCAAATTGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.40
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTTGAATAGTTTAG
Found at i:102292416 original size:42 final size:38
Alignment explanation
Indices: 102292370--102292458 Score: 117
Period size: 37 Copynumber: 2.3 Consensus size: 38
102292360 TAAAAATTAT
102292370 TTATATTAAAAAAACACTATCATAAATATAATAAATATTTTA
1 TTATATTAAAAAAACAC-AT-A-AAA-ATAATAAATATTTTA
*
102292412 TTATATT-AAAAAACACATAAAAATATTAAATATTTTA
1 TTATATTAAAAAAACACATAAAAATAATAAATATTTTA
*
102292449 TTGTATTAAA
1 TTATATTAAA
102292459 TATAATTTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
37 20 0.45
38 5 0.11
39 1 0.02
40 2 0.05
41 9 0.20
42 7 0.16
ACGTcount: A:0.54, C:0.06, G:0.01, T:0.39
Consensus pattern (38 bp):
TTATATTAAAAAAACACATAAAAATAATAAATATTTTA
Found at i:102295880 original size:32 final size:32
Alignment explanation
Indices: 102295844--102295908 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
102295834 ATTTTCTGTC
102295844 ATGTTGCCATGGTATCTTTCAACCATGGTCTT
1 ATGTTGCCATGGTATCTTTCAACCATGGTCTT
*
102295876 ATGTTGCCATGGTTTCTTTCAACCATGGTCTT
1 ATGTTGCCATGGTATCTTTCAACCATGGTCTT
102295908 A
1 A
102295909 CACATTTCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.42
Consensus pattern (32 bp):
ATGTTGCCATGGTATCTTTCAACCATGGTCTT
Found at i:102295901 original size:16 final size:16
Alignment explanation
Indices: 102295850--102295904 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
102295840 TGTCATGTTG
*
102295850 CCATGGTATCTTTCAA
1 CCATGGTTTCTTTCAA
* *
102295866 CCATGGTCTTATGTT--G
1 CCATGGT-TTCT-TTCAA
102295882 CCATGGTTTCTTTCAA
1 CCATGGTTTCTTTCAA
102295898 CCATGGT
1 CCATGGT
102295905 CTTACACATT
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
14 2 0.07
15 3 0.10
16 21 0.70
17 2 0.07
18 2 0.07
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.40
Consensus pattern (16 bp):
CCATGGTTTCTTTCAA
Found at i:102295907 original size:96 final size:96
Alignment explanation
Indices: 102295414--102295877 Score: 883
Period size: 96 Copynumber: 4.8 Consensus size: 96
102295404 TTTGACATGA
102295414 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
1 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
102295479 CAACCATGGTCTTATTCTTTTCATGTCACGT
66 CAACCATGGTCTTATTCTTTTCATGTCACGT
102295510 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
1 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
*
102295575 CAATCATGGTCTTATTCTTTTCATGTCACGT
66 CAACCATGGTCTTATTCTTTTCATGTCACGT
* * *
102295606 TGCCATGGTGTCTTTCAACTATGGTCTTTCTCATTCATTTTCTGTCATGTTGCCATGATATCTTT
1 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
102295671 CAACCATGGTCTTATTCTTTTCATGTCACGT
66 CAACCATGGTCTTATTCTTTTCATGTCACGT
102295702 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
1 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
*
102295767 CAACCATGGTCTTATTCTTTTTATGTCACGT
66 CAACCATGGTCTTATTCTTTTCATGTCACGT
102295798 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
1 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
102295863 CAACCATGGTCTTAT
66 CAACCATGGTCTTAT
102295878 GTTGCCATGG
Statistics
Matches: 359, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 359 1.00
ACGTcount: A:0.18, C:0.22, G:0.15, T:0.45
Consensus pattern (96 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
CAACCATGGTCTTATTCTTTTCATGTCACGT
Found at i:102295930 original size:46 final size:46
Alignment explanation
Indices: 102295878--102295969 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
102295868 ATGGTCTTAT
*
102295878 GTTGCCATGGTTTCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
102295924 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
102295970 AGAGCACACT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
Found at i:102295945 original size:78 final size:80
Alignment explanation
Indices: 102295796--102295954 Score: 225
Period size: 78 Copynumber: 2.0 Consensus size: 80
102295786 TTTATGTCAC
* * *
102295796 GTTGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCT
1 GTTGCCATAGTGTCTTTCAACCATGGTCTTAC-CA-TCATTTTCTATCAGGTTGCCATGGTATCT
102295861 TTCAACCATGGTCTTAT
64 TTCAACCATGGTCTTAT
* *
102295878 GTTGCCATGGTTTCTTTCAACCATGGTCTTA-CA-CA-TTTCATATCAGGTTGCCATGGTATCTT
1 GTTGCCATAGTGTCTTTCAACCATGGTCTTACCATCATTTTC-TATCAGGTTGCCATGGTATCTT
102295940 TCAACCATGGTCTTA
65 TCAACCATGGTCTTA
102295955 CACATTTCAT
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
77 4 0.06
78 37 0.52
80 2 0.03
82 28 0.39
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (80 bp):
GTTGCCATAGTGTCTTTCAACCATGGTCTTACCATCATTTTCTATCAGGTTGCCATGGTATCTTT
CAACCATGGTCTTAT
Found at i:102298037 original size:21 final size:22
Alignment explanation
Indices: 102298013--102298062 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
102298003 AAATCCGAAT
102298013 TTTTCCCTTT-TTCCTTCTTTC
1 TTTTCCCTTTCTTCCTTCTTTC
*
102298034 TTTT--TTTTCCTTCCTTCTTTC
1 TTTTCCCTTT-CTTCCTTCTTTC
*
102298055 TTTCCCCT
1 TTTTCCCT
102298063 GCTCTCTGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 6
0.71 0.10 0.19
Matches are distributed among these distances:
19 3 0.14
21 18 0.82
23 1 0.05
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (22 bp):
TTTTCCCTTTCTTCCTTCTTTC
Found at i:102298042 original size:17 final size:17
Alignment explanation
Indices: 102298020--102298053 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
102298010 AATTTTTCCC
*
102298020 TTTTTCCTTCTTTCTTT
1 TTTTTCCTTCCTTCTTT
102298037 TTTTTCCTTCCTTCTTT
1 TTTTTCCTTCCTTCTTT
102298054 CTTTCCCCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTCCTTCCTTCTTT
Found at i:102298114 original size:16 final size:17
Alignment explanation
Indices: 102298093--102298124 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
102298083 CCTTTCTTTC
102298093 TTTTTCTA-TTCTTTTT
1 TTTTTCTATTTCTTTTT
102298109 TTTTTCTATTTCTTTT
1 TTTTTCTATTTCTTTT
102298125 ACTTTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTTCTATTTCTTTTT
Found at i:102309144 original size:42 final size:42
Alignment explanation
Indices: 102309086--102309180 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
102309076 TTCATAGTAG
*
102309086 TTAAT-AAATTTAATAGCTCTTATTTGAGTTAAGATTAAAAT
1 TTAATAAAATTTAATAGCTCTTATTTGAGTCAAGATTAAAAT
* *
102309127 TTAATAAAATTTAATAGCTCTTGTTTGAGTCAAGATTGAAAT
1 TTAATAAAATTTAATAGCTCTTATTTGAGTCAAGATTAAAAT
102309169 TT--TAAAATTTAA
1 TTAATAAAATTTAA
102309181 AAAATATAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
40 10 0.20
41 5 0.10
42 35 0.70
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (42 bp):
TTAATAAAATTTAATAGCTCTTATTTGAGTCAAGATTAAAAT
Found at i:102314360 original size:51 final size:51
Alignment explanation
Indices: 102314228--102314368 Score: 135
Period size: 51 Copynumber: 2.8 Consensus size: 51
102314218 TTGTGTAGAT
*
102314228 ATTGATAGAATATGTAAATATTGCAAA-TTAACA-TTGTTAAATCATGACCAA
1 ATTGATAGAATATGTAAATATT-AAAAGTTAA-ATTTGTTAAATCATGACCAA
* * * *** *
102314279 ATTGACAAAATATGTAAATGTTATGGGTTAAATTTGTTAAATCAAT-ATCAA
1 ATTGATAGAATATGTAAATATTAAAAGTTAAATTTGTTAAATC-ATGACCAA
* * *
102314330 GTTGATAGGATATGTAAATATTAAAAGTTAATTTTGTTA
1 ATTGATAGAATATGTAAATATTAAAAGTTAAATTTGTTA
102314369 CTATATCGAT
Statistics
Matches: 70, Mismatches: 17, Indels: 6
0.75 0.18 0.06
Matches are distributed among these distances:
50 1 0.01
51 67 0.96
52 2 0.03
ACGTcount: A:0.43, C:0.06, G:0.14, T:0.38
Consensus pattern (51 bp):
ATTGATAGAATATGTAAATATTAAAAGTTAAATTTGTTAAATCATGACCAA
Found at i:102315488 original size:15 final size:15
Alignment explanation
Indices: 102315457--102315498 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
102315447 TAATAAATAT
*
102315457 ATTATATTCTTTCAA
1 ATTATTTTCTTTCAA
102315472 ATTACTTTTCTTT-AA
1 ATTA-TTTTCTTTCAA
102315487 ATTATTTT-TTTC
1 ATTATTTTCTTTC
102315499 TTTATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
13 3 0.12
14 4 0.17
15 10 0.42
16 7 0.29
ACGTcount: A:0.26, C:0.12, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTATTTTCTTTCAA
Found at i:102317994 original size:217 final size:216
Alignment explanation
Indices: 102317601--102318584 Score: 1483
Period size: 215 Copynumber: 4.6 Consensus size: 216
102317591 ATATATATAT
* ** *
102317601 ATATATATAACATACGCATGTCTAGTTAGAATATTTAGACAAGTTGTCGGCCACCTTATCTGTAA
1 ATATATATAACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAA
* * *
102317666 AATGTGATCATTTTGGCAAATATTCCATATTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATG
66 AATGTGATCATTTTAGCAAATATTCCAT-CTTAAGAACTTTCCTGGAAATTTTTCTGAAACTATG
* * *
102317731 ACCCATCAAGGCTCTTGGCAGAATCGTAAGATAAAACCTGAAGCAGAATTGAGACACATCAATAT
130 ACCCATCAAGGCTCTTAGCAGAATCGTGAGATAAAACCCGAAGCAGAATTGAGACACATCAATAT
102317796 ATATATCCATTTGTATATCTCA
195 ATATATCCATTTGTATATCTCA
* * * *
102317818 ATAGATATACACATACGCATGTGTGGTTAGAATATTTGGACAAGTTGTCCTCTACCTTATCTGTA
1 ATATATATA-ACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTA
102317883 AAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACTATG
65 AAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACTATG
* *
102317948 ACCCATCAAGGCTCTTAGCAGAATGGTGAGATAAAACCCGAAGCAGAATTGAGACACTTC-A-AT
130 ACCCATCAAGGCTCTTAGCAGAATCGTGAGATAAAACCCGAAGCAGAATTGAGACACATCAATAT
*
102318011 ATATATCCAATTGTATATCTCA
195 ATATATCCATTTGTATATCTCA
* *
102318033 ATATATATATACATACGCATGTCTAGTTAGACTATTTGGACAAGTTGTCATCTATCTTATCTGTA
1 ATATATATA-ACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTA
* *
102318098 AAATGTGATTATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATG
65 AAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACTATG
* * * *
102318163 ACCCATCAAGACTCTTAGCAGAGTCGTGAGATAGAACCCGAAGCAGAACTGAGACACATCAATAT
130 ACCCATCAAGGCTCTTAGCAGAATCGTGAGATAAAACCCGAAGCAGAATTGAGACACATCAATAT
102318228 ATATATCCATTTG----T-T--
195 ATATATCCATTTGTATATCTCA
*
102318243 ATATATAT-ACATACGCATGTCTAGTTAGAATATTTGGTCAAGTTGTCATCTACCTTATCTGTAA
1 ATATATATAACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAA
* *
102318307 AATGTGATCATTTTAGCAAACATTCCATCTTAAGAACTTTACTGGAAATTTTTCTGAAACTATGA
66 AATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACTATGA
* * * * * *
102318372 CTCATCAAGGCTCTTAGCAGAGTCGTGAGGTAAAACCCAAAGCAGAATTGAGCCACACCAATATA
131 CCCATCAAGGCTCTTAGCAGAATCGTGAGATAAAACCCGAAGCAGAATTGAGACACATC-A-ATA
102318437 TATATATCCATTTGTATATCTCAA
194 TATATATCCATTTGTATATCTC-A
*
102318461 TATATATATACACATACGCGTGTCTAGTTAGAAT-TTTGGACAAG-T-T-ATCTACCTTATCTGT
1 -ATATATATA-ACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGT
102318522 AAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACT
64 AAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACT
102318585 TTTTTTTTCC
Statistics
Matches: 700, Mismatches: 51, Indels: 32
0.89 0.07 0.04
Matches are distributed among these distances:
208 165 0.24
209 1 0.00
210 25 0.04
212 1 0.00
213 1 0.00
214 1 0.00
215 199 0.28
216 2 0.00
217 187 0.27
218 78 0.11
219 9 0.01
220 9 0.01
221 22 0.03
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (216 bp):
ATATATATAACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAA
AATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACTATGA
CCCATCAAGGCTCTTAGCAGAATCGTGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATA
TATATCCATTTGTATATCTCA
Found at i:102318362 original size:208 final size:212
Alignment explanation
Indices: 102317598--102318584 Score: 1276
Period size: 208 Copynumber: 4.6 Consensus size: 212
102317588 TCAATATATA
* ** *
102317598 TATATATATATAACATACGCATGTCTAGTTAGAATATTTAGACAAGTTGTCGGCCACCTTATCTG
1 TATATATATAT-ACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTG
* * *
102317663 TAAAATGTGATCATTTTGGCAAATATTCCATATTTAAGAACTTTCCTGGAAAATTTTCTGAAACT
65 TAAAATGTGATCATTTTAGCAAATATTCCAT-CTTAAGAACTTTCCTGGAAATTTTTCTGAAACT
* * * * ** * *
102317728 ATGACCCATCAAGGCTCTTGGCAGAATCGTAAGATAAAACCTGAAGCAGAATTGAGACACATC-A
129 ATGACCCATCAAGACTCTTAGCAGAGTCGTGAGATAAAACCCAAAGCAGAACTGAGACACACCAA
102317792 -ATATATATATCCATTTGT
194 TATATATATATCCATTTGT
* * * *
102317810 ATATCTCAATAGATATACACATACGCATGTGTGGTTAGAATATTTGGACAAGTTGTCCTCTACCT
1 -TA--T--AT--ATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCT
102317875 TATCTGTAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTG
59 TATCTGTAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTG
* * * * *
102317940 AAACTATGACCCATCAAGGCTCTTAGCAGAATGGTGAGATAAAACCCGAAGCAGAATTGAGACAC
124 AAACTATGACCCATCAAGACTCTTAGCAGAGTCGTGAGATAAAACCCAAAGCAGAACTGAGACAC
** ** * *
102318005 TTCAATATATATCCA-ATTGTATATCT
189 ACCAATATATAT--ATA-TCCATTTGT
* * *
102318031 CAATATATATATACATACGCATGTCTAGTTAGACTATTTGGACAAGTTGTCATCTATCTTATCTG
1 -TATATATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTG
* *
102318096 TAAAATGTGATTATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACTA
65 TAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACTA
* * *
102318161 TGACCCATCAAGACTCTTAGCAGAGTCGTGAGATAGAACCCGAAGCAGAACTGAGACACATC-A-
130 TGACCCATCAAGACTCTTAGCAGAGTCGTGAGATAAAACCCAAAGCAGAACTGAGACACACCAAT
102318224 ATATATATATCCATTTG-
195 ATATATATATCCATTTGT
*
102318241 T-TATATATATACATACGCATGTCTAGTTAGAATATTTGGTCAAGTTGTCATCTACCTTATCTGT
1 TATATATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGT
* *
102318305 AAAATGTGATCATTTTAGCAAACATTCCATCTTAAGAACTTTACTGGAAATTTTTCTGAAACTAT
66 AAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACTAT
* * * * *
102318370 GACTCATCAAGGCTCTTAGCAGAGTCGTGAGGTAAAACCCAAAGCAGAATTGAGCCACACCAATA
131 GACCCATCAAGACTCTTAGCAGAGTCGTGAGATAAAACCCAAAGCAGAACTGAGACACACCAATA
102318435 TATATATATCCATTTGTATAT
196 TATATATATCCATTTG----T
*
102318456 CTCAATATATATATACACATACGCGTGTCTAGTTAGAAT-TTTGGACAAG-T-T-ATCTACCTTA
1 -T--ATATATATAT--ACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTA
102318517 TCTGTAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAA
61 TCTGTAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAA
102318582 ACT
126 ACT
102318585 TTTTTTTTCC
Statistics
Matches: 690, Mismatches: 59, Indels: 46
0.87 0.07 0.06
Matches are distributed among these distances:
208 174 0.25
209 1 0.00
210 17 0.02
211 5 0.01
212 1 0.00
213 8 0.01
214 1 0.00
215 173 0.25
216 1 0.00
217 169 0.24
218 79 0.11
219 22 0.03
220 10 0.01
221 29 0.04
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.34
Consensus pattern (212 bp):
TATATATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGT
AAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACTAT
GACCCATCAAGACTCTTAGCAGAGTCGTGAGATAAAACCCAAAGCAGAACTGAGACACACCAATA
TATATATATCCATTTGT
Found at i:102320875 original size:3 final size:3
Alignment explanation
Indices: 102320867--102320901 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
102320857 TGATTTCTTT
102320867 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
102320902 TTTAGTTCGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:102323016 original size:24 final size:23
Alignment explanation
Indices: 102322987--102323038 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 23
102322977 GTAACAAGTC
102322987 CATCTTCTTAGCTTTCACTAGAG
1 CATCTTCTTAGCTTTCACTAGAG
102323010 TCATCTTCTTAGCTTTCACTAGAG
1 -CATCTTCTTAGCTTTCACTAGAG
102323034 CATCT
1 CATCT
102323039 GTGGTGATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 5 0.18
24 23 0.82
ACGTcount: A:0.21, C:0.27, G:0.12, T:0.40
Consensus pattern (23 bp):
CATCTTCTTAGCTTTCACTAGAG
Found at i:102327664 original size:19 final size:21
Alignment explanation
Indices: 102327642--102327691 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
102327632 TTGTTTTATG
102327642 AAAAATAATT-TA-ATCAATA
1 AAAAATAATTATAGATCAATA
* *
102327661 AAAAATGACTTATAGATTAATA
1 AAAAAT-AATTATAGATCAATA
102327683 AAAAATAAT
1 AAAAATAAT
102327692 ATATTTTTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 6 0.24
20 3 0.12
21 4 0.16
22 12 0.48
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (21 bp):
AAAAATAATTATAGATCAATA
Found at i:102328933 original size:14 final size:14
Alignment explanation
Indices: 102328901--102328938 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
102328891 AAATAATAAT
102328901 TCAATTTTTAGAAA
1 TCAATTTTTAGAAA
*
102328915 T-AATTTTTCGAAA
1 TCAATTTTTAGAAA
102328928 TCAATTTTTAG
1 TCAATTTTTAG
102328939 TGAAACAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.47
Consensus pattern (14 bp):
TCAATTTTTAGAAA
Found at i:102331133 original size:22 final size:22
Alignment explanation
Indices: 102331085--102331133 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
102331075 TGAATTATCT
* *
102331085 GTTTTCTTTTAATATTTTATTA
1 GTTTTCTTTTAATATTTAAATA
* * *
102331107 ATTTTCTTTTTATATTTAAATG
1 GTTTTCTTTTAATATTTAAATA
102331129 GTTTT
1 GTTTT
102331134 GAATTTTTTT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.22, C:0.04, G:0.06, T:0.67
Consensus pattern (22 bp):
GTTTTCTTTTAATATTTAAATA
Found at i:102333162 original size:25 final size:26
Alignment explanation
Indices: 102333128--102333178 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
102333118 TATTATTCTA
102333128 CATTTAAATTTTATT-ATATATATTC
1 CATTTAAATTTTATTGATATATATTC
* *
102333153 CATTTAAATTTTTTTGATTTATATTC
1 CATTTAAATTTTATTGATATATATTC
102333179 AAATATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (26 bp):
CATTTAAATTTTATTGATATATATTC
Found at i:102333165 original size:26 final size:25
Alignment explanation
Indices: 102333128--102333178 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
102333118 TATTATTCTA
102333128 CATTTAAATTTTATT-ATATATATTC
1 CATTTAAATTTT-TTGATATATATTC
*
102333153 CATTTAAATTTTTTTGATTTATATTC
1 CATTTAAA-TTTTTTGATATATATTC
102333179 AAATATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (25 bp):
CATTTAAATTTTTTGATATATATTC
Found at i:102340323 original size:30 final size:30
Alignment explanation
Indices: 102340288--102340453 Score: 226
Period size: 30 Copynumber: 5.5 Consensus size: 30
102340278 CCCCCAGTTT
* *
102340288 CAACTCCTCCACCCAG-TTCTCCTCCTCCCG
1 CAACTCCACCA-CCAGCTTCTCCACCTCCCG
* *
102340318 CAACTCCACCACCTGCTTCTCCACCTCCTG
1 CAACTCCACCACCAGCTTCTCCACCTCCCG
* *
102340348 CAACTCCACCTCCAGCTTCTCCACCTCCTG
1 CAACTCCACCACCAGCTTCTCCACCTCCCG
*
102340378 CAACTCCACCTCCAGCTTCTCCACCTCCCG
1 CAACTCCACCACCAGCTTCTCCACCTCCCG
* *
102340408 CCACTCCTCCACCAGCTTCTCCACCTCCCG
1 CAACTCCACCACCAGCTTCTCCACCTCCCG
*
102340438 CCACTCCACCACCAGC
1 CAACTCCACCACCAGC
102340454 AACCCCCCAC
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
29 3 0.02
30 121 0.98
ACGTcount: A:0.16, C:0.57, G:0.07, T:0.20
Consensus pattern (30 bp):
CAACTCCACCACCAGCTTCTCCACCTCCCG
Found at i:102340324 original size:15 final size:15
Alignment explanation
Indices: 102340306--102340456 Score: 113
Period size: 15 Copynumber: 10.1 Consensus size: 15
102340296 CCACCCAGTT
* *
102340306 CTCCTCCTCCCGCAA
1 CTCCACCTCCAGCAA
* * **
102340321 CTCCACCACCTGCTT
1 CTCCACCTCCAGCAA
*
102340336 CTCCACCTCCTGCAA
1 CTCCACCTCCAGCAA
**
102340351 CTCCACCTCCAGCTT
1 CTCCACCTCCAGCAA
*
102340366 CTCCACCTCCTGCAA
1 CTCCACCTCCAGCAA
**
102340381 CTCCACCTCCAGCTT
1 CTCCACCTCCAGCAA
* *
102340396 CTCCACCTCCCGCCA
1 CTCCACCTCCAGCAA
* * **
102340411 CTCCTCCACCAGCTT
1 CTCCACCTCCAGCAA
* *
102340426 CTCCACCTCCCGCCA
1 CTCCACCTCCAGCAA
*
102340441 CTCCACCACCAGCAA
1 CTCCACCTCCAGCAA
102340456 C
1 C
102340457 CCCCCACCTG
Statistics
Matches: 103, Mismatches: 33, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 103 1.00
ACGTcount: A:0.17, C:0.57, G:0.07, T:0.20
Consensus pattern (15 bp):
CTCCACCTCCAGCAA
Found at i:102341149 original size:28 final size:28
Alignment explanation
Indices: 102341104--102341160 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
102341094 CTTTCTTATA
102341104 TTAACAACGGTATCTATGTCAATCGAAT
1 TTAACAACGGTATCTATGTCAATCGAAT
* * *
102341132 TTAACAATGGTA-CTTATGTTAATTGAAT
1 TTAACAACGGTATC-TATGTCAATCGAAT
102341160 T
1 T
102341161 AAGACTGAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 1 0.04
28 24 0.96
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (28 bp):
TTAACAACGGTATCTATGTCAATCGAAT
Found at i:102344009 original size:30 final size:31
Alignment explanation
Indices: 102343971--102344048 Score: 81
Period size: 30 Copynumber: 2.6 Consensus size: 31
102343961 TTTATCCCTA
102343971 ATAT-TTATGTATTATGTAAATA-TTTTAAT
1 ATATATTATGTATTATGTAAATATTTTTAAT
* * * **
102344000 TTATATTATGTA-TATCTATATATTTTTCGT
1 ATATATTATGTATTATGTAAATATTTTTAAT
102344030 ATATATTATGTATATATGT
1 ATATATTATGTAT-TATGT
102344049 TTTCAATATT
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
29 11 0.29
30 23 0.61
32 4 0.11
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (31 bp):
ATATATTATGTATTATGTAAATATTTTTAAT
Found at i:102344057 original size:24 final size:25
Alignment explanation
Indices: 102344016--102344071 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
102344006 TATGTATATC
*
102344016 TATATATTTTTCGTATATAT-TATG-
1 TATATATTTTTCGAATAT-TGTATGT
102344040 TATATATGTTTTC-AATATTGTATGT
1 TATATAT-TTTTCGAATATTGTATGT
102344065 TATATAT
1 TATATAT
102344072 ATTATTGTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 1 0.04
24 15 0.54
25 12 0.43
ACGTcount: A:0.30, C:0.04, G:0.09, T:0.57
Consensus pattern (25 bp):
TATATATTTTTCGAATATTGTATGT
Found at i:102344162 original size:19 final size:19
Alignment explanation
Indices: 102344128--102344164 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
102344118 CTATTTTATA
* *
102344128 TATATTTCTTATATCATTG
1 TATATTTCTAACATCATTG
102344147 TATATTTCTAACATCATT
1 TATATTTCTAACATCATT
102344165 ATTATTTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.14, G:0.03, T:0.54
Consensus pattern (19 bp):
TATATTTCTAACATCATTG
Found at i:102344269 original size:20 final size:18
Alignment explanation
Indices: 102344233--102344272 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
102344223 TCATTTCTAA
*
102344233 TATATATTATATGTATTT
1 TATATATTATATATATTT
102344251 TATATATTATGTATATATTT
1 TATATATTA--TATATATTT
102344271 TA
1 TA
102344273 ATGTTATTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (18 bp):
TATATATTATATATATTT
Found at i:102355635 original size:13 final size:13
Alignment explanation
Indices: 102355617--102355642 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
102355607 TTGTCCTAGT
102355617 GATTAAATTAAAA
1 GATTAAATTAAAA
102355630 GATTAAATTAAAA
1 GATTAAATTAAAA
102355643 ATAAGTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (13 bp):
GATTAAATTAAAA
Found at i:102359202 original size:16 final size:15
Alignment explanation
Indices: 102359181--102359211 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
102359171 ATTCAATCAA
102359181 TATTATATTATTTTTT
1 TATTATATT-TTTTTT
102359197 TATTATATTTTTTTT
1 TATTATATTTTTTTT
102359212 CACTTACAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
TATTATATTTTTTTT
Found at i:102359584 original size:31 final size:29
Alignment explanation
Indices: 102359545--102359619 Score: 91
Period size: 30 Copynumber: 2.5 Consensus size: 29
102359535 TTAATAATTT
102359545 AAGATAAAATTTAAAATATAAAAAATA-AAA
1 AAGATAAAATTTAAAA-AT-AAAAATACAAA
102359575 AAGATTAAAATTTTAAAAATAAAAATACAAA
1 AAGA-TAAAA-TTTAAAAATAAAAATACAAA
102359606 AA-ATATAAATTTAA
1 AAGATA-AAATTTAA
102359620 CTAAAATCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
29 7 0.17
30 15 0.37
31 12 0.29
32 7 0.17
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.27
Consensus pattern (29 bp):
AAGATAAAATTTAAAAATAAAAATACAAA
Found at i:102361911 original size:78 final size:78
Alignment explanation
Indices: 102361782--102361935 Score: 308
Period size: 78 Copynumber: 2.0 Consensus size: 78
102361772 ATTTCTATGG
102361782 TTAAATATTGATAAACACTGACTACATCTTCATATCTCCTTGGATTCCTTGAGCTGAAGAAACAT
1 TTAAATATTGATAAACACTGACTACATCTTCATATCTCCTTGGATTCCTTGAGCTGAAGAAACAT
102361847 AATTTTCCTTTGC
66 AATTTTCCTTTGC
102361860 TTAAATATTGATAAACACTGACTACATCTTCATATCTCCTTGGATTCCTTGAGCTGAAGAAACAT
1 TTAAATATTGATAAACACTGACTACATCTTCATATCTCCTTGGATTCCTTGAGCTGAAGAAACAT
102361925 AATTTTCCTTT
66 AATTTTCCTTT
102361936 ATTTTTCAGT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (78 bp):
TTAAATATTGATAAACACTGACTACATCTTCATATCTCCTTGGATTCCTTGAGCTGAAGAAACAT
AATTTTCCTTTGC
Done.