Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 318 of 325
Found at i:102372161 original size:41 final size:41
Alignment explanation
Indices: 102372104--102372185 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
102372094 AAATAAAAAG
102372104 AATGAAGATCTTGTTTGCAACATTGCTGGTTTGCTTTCTTC
1 AATGAAGATCTTGTTTGCAACATTGCTGGTTTGCTTTCTTC
102372145 AATGAAGATCTTGTTTGCAACATTGCTGGTTTGCTTTCTTC
1 AATGAAGATCTTGTTTGCAACATTGCTGGTTTGCTTTCTTC
102372186 TACTATGTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.44
Consensus pattern (41 bp):
AATGAAGATCTTGTTTGCAACATTGCTGGTTTGCTTTCTTC
Found at i:102373291 original size:21 final size:21
Alignment explanation
Indices: 102373239--102373291 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 21
102373229 TATAAAAAAT
102373239 ATTATATTAATTATATATTTAA
1 ATTATATT-ATTATATATTTAA
*
102373261 ATAATAATTA-TATATATTTATA
1 ATTAT-ATTATTATATATTTA-A
*
102373283 TTTATATTA
1 ATTATATTA
102373292 AATCACTAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 14 0.54
22 9 0.35
23 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
ATTATATTATTATATATTTAA
Found at i:102374535 original size:2 final size:2
Alignment explanation
Indices: 102374530--102374568 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
102374520 GAGAGGAGAG
102374530 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
102374569 GAGATCTTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:102376900 original size:16 final size:15
Alignment explanation
Indices: 102376859--102376912 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 15
102376849 AATAAATTTT
102376859 TATTTTTA-TTTA-A
1 TATTTTTATTTTATA
102376872 TATTTATTAATTTTATA
1 TATTT-TT-ATTTTATA
102376889 TACTTTTTATTTTATA
1 TA-TTTTTATTTTATA
*
102376905 AATTTTTA
1 TATTTTTA
102376913 AACATAAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
13 5 0.14
14 2 0.06
15 7 0.20
16 13 0.37
17 5 0.14
18 3 0.09
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (15 bp):
TATTTTTATTTTATA
Found at i:102378958 original size:55 final size:53
Alignment explanation
Indices: 102378805--102379006 Score: 180
Period size: 55 Copynumber: 3.8 Consensus size: 53
102378795 ATTAGGGTTT
* * * * *
102378805 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGAAACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAA-GTTTATAAGGA
* * *
102378860 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAA
1 AAGGAAACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TATAAGG-A
**
102378916 AAGG-TCCCATGTAAGACCATGTCAAGACATGGCAATGGTAAG-TT-TAA--A
1 AAGGAAACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTATAAGGA
* ** * * *
102378964 AAGGATACCACATAATACCATGACAAGTCATGGCAATGGTAAG
1 AAGGAAACCATGTAAGACCATGTCAAGACATGGCAATGGTAAG
102379007 GTACCCGCGT
Statistics
Matches: 124, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
48 5 0.04
49 32 0.26
51 3 0.02
52 1 0.01
53 3 0.02
54 6 0.05
55 70 0.56
56 4 0.03
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (53 bp):
AAGGAAACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTATAAGGA
Found at i:102389152 original size:19 final size:19
Alignment explanation
Indices: 102389128--102389258 Score: 81
Period size: 19 Copynumber: 6.9 Consensus size: 19
102389118 CTAGTATGAT
102389128 AATTTTATAATTTTTTACA
1 AATTTTATAATTTTTTACA
102389147 AATTTT-TAATTTTTTTACA
1 AATTTTATAA-TTTTTTACA
**
102389166 TTTTTTATAATTTTTTTAC-
1 AATTTTATAA-TTTTTTACA
* *
102389185 AACTTTATAATATTTTT-CT
1 AATTTTATAAT-TTTTTACA
* * * *
102389204 ATTTTTCTATATATTTTATA
1 AATTTTATA-ATTTTTTACA
* * * *
102389224 ATTTTTCTAATTTTTAATA
1 AATTTTATAATTTTTTACA
*
102389243 AATGTTA-AATTTTTTA
1 AATTTTATAATTTTTTA
102389259 TTAAAATTTA
Statistics
Matches: 89, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
18 13 0.15
19 53 0.60
20 23 0.26
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (19 bp):
AATTTTATAATTTTTTACA
Found at i:102389161 original size:9 final size:9
Alignment explanation
Indices: 102389149--102389238 Score: 56
Period size: 10 Copynumber: 9.3 Consensus size: 9
102389139 TTTTTACAAA
102389149 TTTTTAATT
1 TTTTTAATT
102389158 TTTTTACATT
1 TTTTTA-ATT
102389168 TTTTATAATT
1 TTTT-TAATT
**
102389178 TTTTTACAAC
1 TTTTTA-ATT
*
102389188 TTTATAATAT
1 TTTTTAAT-T
102389198 TTTTCT-ATT
1 TTTT-TAATT
*
102389207 TTTCTATATAT
1 TTTTTA-AT-T
*
102389218 TTTATAATT
1 TTTTTAATT
*
102389227 TTTCTAATT
1 TTTTTAATT
102389236 TTT
1 TTT
102389239 AATAAATGTT
Statistics
Matches: 64, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
8 1 0.02
9 25 0.39
10 29 0.45
11 9 0.14
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTTAATT
Found at i:102390214 original size:22 final size:22
Alignment explanation
Indices: 102390180--102390232 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
102390170 TAGGTTAACC
*
102390180 AATATTATTTTTTATTTT-TTTA
1 AATATT-TATTTTATTTTATTTA
*
102390202 AATTATTTATTTTATTTTATTTT
1 AA-TATTTATTTTATTTTATTTA
102390225 AATATTTA
1 AATATTTA
102390233 ATACTTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 18 0.67
23 9 0.33
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (22 bp):
AATATTTATTTTATTTTATTTA
Found at i:102403039 original size:16 final size:16
Alignment explanation
Indices: 102403018--102403051 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
102403008 GAGTAAACGT
102403018 GGAAGAAAG-GAAGAAG
1 GGAAGAAAGTG-AGAAG
102403034 GGAAGAAAGTGAGAAG
1 GGAAGAAAGTGAGAAG
102403050 GG
1 GG
102403052 GCAAAGGTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 16 0.94
17 1 0.06
ACGTcount: A:0.50, C:0.00, G:0.47, T:0.03
Consensus pattern (16 bp):
GGAAGAAAGTGAGAAG
Found at i:102414758 original size:125 final size:125
Alignment explanation
Indices: 102414629--102414942 Score: 484
Period size: 125 Copynumber: 2.5 Consensus size: 125
102414619 GCCAAATGGT
102414629 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCATT
* * *
102414694 TTAATTTAAGAAAACATGGATGAAATTCCAAAAGGATATTCCGTATTTTAGTCGAATGAA
66 TTAATTTAAGAAAACATAGACGAAATTCCAAAAGGATATTCCATATTTTAGTCGAATGAA
* * **
102414754 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCAAAATACAAAATATTGCCTCGCT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCATT
* * *
102414819 TTAATTTAAGAGAACATAGACGAAATTTCAAAAGGATATTCTATATTTTAGTCGAATGAA
66 TTAATTTAAGAAAACATAGACGAAATTCCAAAAGGATATTCCATATTTTAGTCGAATGAA
* * * * * *
102414879 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAAGATTTCCTCAT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCAT
102414943 GTTGAGGGGG
Statistics
Matches: 169, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
125 169 1.00
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (125 bp):
AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCATT
TTAATTTAAGAAAACATAGACGAAATTCCAAAAGGATATTCCATATTTTAGTCGAATGAA
Found at i:102415808 original size:24 final size:22
Alignment explanation
Indices: 102415749--102415810 Score: 63
Period size: 24 Copynumber: 2.8 Consensus size: 22
102415739 CATGAATGCC
*
102415749 AAATGAA-TTTAAAGAAATAAT
1 AAATGAATTTTAAAGAAATAAA
* * *
102415770 GAATGGATTATAAAGAATATAAA
1 AAATGAATTTTAAAGAA-ATAAA
102415793 AACATGAATTTTAAAGAA
1 AA-ATGAATTTTAAAGAA
102415811 CTCAATGGAA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
21 5 0.16
22 8 0.26
23 5 0.16
24 13 0.42
ACGTcount: A:0.58, C:0.02, G:0.13, T:0.27
Consensus pattern (22 bp):
AAATGAATTTTAAAGAAATAAA
Found at i:102416166 original size:17 final size:17
Alignment explanation
Indices: 102416144--102416182 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
102416134 TTTGCAGGCA
*
102416144 AGTGGGGTAATGGAGTT
1 AGTGGGGTAATGAAGTT
*
102416161 AGTGGGGTGATGAAGTT
1 AGTGGGGTAATGAAGTT
102416178 AGTGG
1 AGTGG
102416183 CAAGTGGGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.23, C:0.00, G:0.49, T:0.28
Consensus pattern (17 bp):
AGTGGGGTAATGAAGTT
Found at i:102420298 original size:21 final size:22
Alignment explanation
Indices: 102420273--102420313 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
102420263 TTTTATCGAT
*
102420273 GATTAATTAAAAAT-TTTAATA
1 GATTAAATAAAAATATTTAATA
102420294 GATTAAATAAAAATATTTAA
1 GATTAAATAAAAATATTTAA
102420314 AGGATTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (22 bp):
GATTAAATAAAAATATTTAATA
Found at i:102420348 original size:20 final size:19
Alignment explanation
Indices: 102420317--102420362 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
102420307 TATTTAAAGG
102420317 ATTTAAAATAAAT-ATAAA
1 ATTTAAAATAAATAATAAA
102420335 TATTTAAAACTAAATAATAAA
1 -ATTTAAAA-TAAATAATAAA
102420356 ATTTAAA
1 ATTTAAA
102420363 TGTTGAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.32
20 12 0.48
21 5 0.20
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (19 bp):
ATTTAAAATAAATAATAAA
Found at i:102423007 original size:46 final size:46
Alignment explanation
Indices: 102422940--102423029 Score: 153
Period size: 46 Copynumber: 2.0 Consensus size: 46
102422930 TTTATTGTAC
*
102422940 AAGCCCAATCTGAACTAGCCCAAACCCAAGACCCAAAACAGACCCA
1 AAGCCCAATCTGAACCAGCCCAAACCCAAGACCCAAAACAGACCCA
**
102422986 AAGCCCAATCTGAACCAGCCCAAACCCAAGACTTAAAACAGACC
1 AAGCCCAATCTGAACCAGCCCAAACCCAAGACCCAAAACAGACC
102423030 TAACCCCTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.43, C:0.38, G:0.11, T:0.08
Consensus pattern (46 bp):
AAGCCCAATCTGAACCAGCCCAAACCCAAGACCCAAAACAGACCCA
Found at i:102424193 original size:26 final size:23
Alignment explanation
Indices: 102424129--102424193 Score: 60
Period size: 28 Copynumber: 2.7 Consensus size: 23
102424119 ATATTTCTTT
*
102424129 TATATATAAATATA-TTTTTCTA
1 TATATATACATATACTTTTTCTA
*
102424151 TATATTTACATGCATACTTTTTGTACTA
1 TATATATACAT--ATAC-TTTT-T-CTA
102424179 TATATATACATATAC
1 TATATATACATATAC
102424194 ACTTATTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
22 9 0.26
24 3 0.09
26 8 0.24
27 1 0.03
28 13 0.38
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.49
Consensus pattern (23 bp):
TATATATACATATACTTTTTCTA
Found at i:102424409 original size:27 final size:25
Alignment explanation
Indices: 102424378--102424441 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 25
102424368 ATGTGTCCCC
*
102424378 TTTTTATATAT-ATGTAAATCTCCATA
1 TTTTTATATATCATATAAAT-T-CATA
*
102424404 TATTTTACATATGCATATAAATTCATA
1 T-TTTTATATAT-CATATAAATTCATA
102424431 TTTTTATATAT
1 TTTTTATATAT
102424442 TTTATAATAC
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
26 10 0.31
27 14 0.44
28 1 0.03
29 7 0.22
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.52
Consensus pattern (25 bp):
TTTTTATATATCATATAAATTCATA
Found at i:102424616 original size:5 final size:5
Alignment explanation
Indices: 102424602--102424632 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
102424592 ACATAAGTGC
102424602 TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT TT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TT
102424633 GTTTCACATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:102435398 original size:26 final size:23
Alignment explanation
Indices: 102435334--102435398 Score: 60
Period size: 28 Copynumber: 2.7 Consensus size: 23
102435324 ATATTTCTTT
*
102435334 TATATATAAATATA-TTTTTCTA
1 TATATATACATATACTTTTTCTA
*
102435356 TATATTTACATGCATACTTTTTGTACTA
1 TATATATACAT--ATAC-TTTT-T-CTA
102435384 TATATATACATATAC
1 TATATATACATATAC
102435399 ACTTATTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
22 9 0.26
24 3 0.09
26 8 0.24
27 1 0.03
28 13 0.38
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.49
Consensus pattern (23 bp):
TATATATACATATACTTTTTCTA
Found at i:102435820 original size:5 final size:5
Alignment explanation
Indices: 102435806--102435836 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
102435796 ACATAAGTGC
102435806 TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT TT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TT
102435837 GTTTCACATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:102438404 original size:28 final size:29
Alignment explanation
Indices: 102438351--102438434 Score: 73
Period size: 28 Copynumber: 2.8 Consensus size: 29
102438341 GGTTGATTTA
* * *
102438351 TTAATCTATTTTTAAA-TATAATATTATT-
1 TTAATTTATTTTTAAATTTTTA-ATTATTC
102438379 TTAATTTATTTTTAAATTTTTAATTATTC
1 TTAATTTATTTTTAAATTTTTAATTATTC
* *
102438408 ATAATTACCATTTTTAAAATTTTTAAT
1 TTAATT--TATTTTT-AAATTTTTAAT
102438435 ATAATTATAC
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
28 21 0.46
29 8 0.17
31 6 0.13
32 11 0.24
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (29 bp):
TTAATTTATTTTTAAATTTTTAATTATTC
Found at i:102446442 original size:17 final size:17
Alignment explanation
Indices: 102446404--102446442 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
102446394 TTCTTTAGTT
*
102446404 TTTTCTTTAAAATTATAA
1 TTTT-TTTAAAAATATAA
102446422 -TTTTTTAAAAATATAA
1 TTTTTTTAAAAATATAA
102446438 TTTTT
1 TTTTT
102446443 AGAACTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTTTTTAAAAATATAA
Found at i:102446443 original size:15 final size:16
Alignment explanation
Indices: 102446409--102446442 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
102446399 TAGTTTTTTC
*
102446409 TTTAAAATTATAATTT
1 TTTAAAAATATAATTT
102446425 TTTAAAAATATAATTT
1 TTTAAAAATATAATTT
102446441 TT
1 TT
102446443 AGAACTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTAAAAATATAATTT
Found at i:102446496 original size:20 final size:19
Alignment explanation
Indices: 102446457--102446501 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
102446447 CTTTTATTAA
*
102446457 TATTTAGAATCTTTAAAAT
1 TATTTTGAATCTTTAAAAT
*
102446476 TATTTTGAATTTTTGAAAAT
1 TATTTTGAATCTTT-AAAAT
102446496 TATTTT
1 TATTTT
102446502 AACATTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.56
Consensus pattern (19 bp):
TATTTTGAATCTTTAAAAT
Found at i:102446510 original size:21 final size:20
Alignment explanation
Indices: 102446471--102446510 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
102446461 TAGAATCTTT
*
102446471 AAAATTATTTTGAATTTTTG
1 AAAATTATTTTAAATTTTTG
102446491 AAAATTATTTTAACATTTTT
1 AAAATTATTTTAA-ATTTTT
102446511 TGTAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.55
Consensus pattern (20 bp):
AAAATTATTTTAAATTTTTG
Found at i:102450164 original size:19 final size:19
Alignment explanation
Indices: 102450140--102450177 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
102450130 ATTTTATTGT
*
102450140 GTTTGTTTTATAGAAAATA
1 GTTTGTTTAATAGAAAATA
*
102450159 GTTTGTTTAATGGAAAATA
1 GTTTGTTTAATAGAAAATA
102450178 AGTTACAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (19 bp):
GTTTGTTTAATAGAAAATA
Found at i:102450420 original size:22 final size:22
Alignment explanation
Indices: 102450395--102450438 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
102450385 TAGTCTTATA
102450395 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
102450417 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
102450439 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:102450550 original size:15 final size:15
Alignment explanation
Indices: 102450530--102450586 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
102450520 TTCAATTATT
102450530 AATATTTTAATAATA
1 AATATTTTAATAATA
*
102450545 AATATTTATTATAATTATA
1 AATA--T-TT-TAATAATA
*
102450564 AATATATTAATAATA
1 AATATTTTAATAATA
*
102450579 AATGTTTT
1 AATATTTT
102450587 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 17 0.52
16 1 0.03
17 2 0.06
18 2 0.06
19 11 0.33
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:102450559 original size:19 final size:19
Alignment explanation
Indices: 102450532--102450568 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
102450522 CAATTATTAA
*
102450532 TATTTTAATAATAAATATT
1 TATTATAATAATAAATATT
*
102450551 TATTATAATTATAAATAT
1 TATTATAATAATAAATAT
102450569 ATTAATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTATAATAATAAATATT
Found at i:102451065 original size:14 final size:14
Alignment explanation
Indices: 102451046--102451084 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
102451036 CTAATAAAGT
102451046 AAATCATTTTCCAG
1 AAATCATTTTCCAG
**
102451060 AAATCATTTTCTGG
1 AAATCATTTTCCAG
102451074 AAATCATTTTC
1 AAATCATTTTC
102451085 AGTGAAACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:102461300 original size:23 final size:23
Alignment explanation
Indices: 102461269--102461936 Score: 626
Period size: 23 Copynumber: 29.1 Consensus size: 23
102461259 AAATAAGTAC
* *
102461269 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
* *
102461292 TTAAGCACTTCAATTTACAACAT
1 TTAAACACTTCAATTTACAGCAT
*
102461315 TTAAACACTTCAATTTGCAGCAT
1 TTAAACACTTCAATTTACAGCAT
*
102461338 TTAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
*
102461362 TT-AACA-TCTCAA-TTACCAACAT
1 TTAAACACT-TCAATTTA-CAGCAT
* *
102461384 TTATACACCTCAA-TTACAGCGA-
1 TTAAACACTTCAATTTACAGC-AT
* * * *
102461406 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTACAGCAT
* * * *
102461429 CTAAACACTTCAATTTGCAGTAC
1 TTAAACACTTCAATTTACAGCAT
* *
102461452 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
* *
102461475 TTAAGCCCTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
102461498 TTAAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* **
102461521 TCAAACACTTCAATTTGTAGCACT
1 TTAAACACTTCAATTTACAGCA-T
102461545 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* **
102461567 TCAAACACTTCAATTTGTAGCACT
1 TTAAACACTTCAATTTACAGCA-T
102461591 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
*
102461613 TTCAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
102461636 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
102461660 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
102461682 TAAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* * *
102461706 TT-AACATTTCAATTAACAACAT
1 TTAAACACTTCAATTTACAGCAT
*
102461728 TTAAACACTACAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
102461751 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
102461775 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
102461797 TAAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* * *
102461821 TT-AACATTTCAATTAACAACAT
1 TTAAACACTTCAATTTACAGCAT
* * * *
102461843 TTATACACCTCAA-TTACAACAA
1 TTAAACACTTCAATTTACAGCAT
* * *
102461865 TAAAACA-TCTCAATTTCCAGCAA
1 TTAAACACT-TCAATTTACAGCAT
* * * *
102461888 CTAAACACTTCAATTTGCAGTAC
1 TTAAACACTTCAATTTACAGCAT
* *
102461911 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
102461934 TTA
1 TTA
102461937 CTACTAATAT
Statistics
Matches: 530, Mismatches: 90, Indels: 50
0.79 0.13 0.07
Matches are distributed among these distances:
22 50 0.09
23 463 0.87
24 17 0.03
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (23 bp):
TTAAACACTTCAATTTACAGCAT
Found at i:102461876 original size:22 final size:23
Alignment explanation
Indices: 102461823--102461879 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
102461813 GCAGCACTTT
* * *
102461823 AACATTTCAATTAACAACATTTA
1 AACATCTCAATTAACAACAATAA
* *
102461846 TACACCTCAATT-ACAACAATAA
1 AACATCTCAATTAACAACAATAA
102461868 AACATCTCAATT
1 AACATCTCAATT
102461880 TCCAGCAACT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
22 18 0.67
23 9 0.33
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (23 bp):
AACATCTCAATTAACAACAATAA
Found at i:102466833 original size:16 final size:16
Alignment explanation
Indices: 102466807--102466863 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
102466797 AAATATTAAA
*
102466807 TTTTAAATTTTAAAAT
1 TTTTAATTTTTAAAAT
*
102466823 TTTTTATTTTTAAAAT
1 TTTTAATTTTTAAAAT
102466839 TTTTAA-TTTT-AAAT
1 TTTTAATTTTTAAAAT
*
102466853 TTTAAATTTTT
1 TTTTAATTTTT
102466864 TTTGAAGATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
14 9 0.25
15 8 0.22
16 19 0.53
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTTAATTTTTAAAAT
Found at i:102466848 original size:6 final size:7
Alignment explanation
Indices: 102466797--102466862 Score: 69
Period size: 7 Copynumber: 9.0 Consensus size: 7
102466787 ATATGAACTA
*
102466797 AAATATT
1 AAATTTT
102466804 AAATTTT
1 AAATTTT
102466811 AAATTTT
1 AAATTTT
102466818 AAAATTTTT
1 -AAA-TTTT
* *
102466827 TATTTTT
1 AAATTTT
102466834 AAAATTTT
1 -AAATTTT
*
102466842 TAATTTT
1 AAATTTT
102466849 AAATTTT
1 AAATTTT
102466856 AAATTTT
1 AAATTTT
102466863 TTTTGAAGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
7 36 0.73
8 9 0.18
9 4 0.08
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
AAATTTT
Found at i:102466863 original size:15 final size:15
Alignment explanation
Indices: 102466802--102466863 Score: 72
Period size: 15 Copynumber: 4.1 Consensus size: 15
102466792 AACTAAAATA
102466802 TTAAATTTTAAATTT
1 TTAAATTTTAAATTT
* **
102466817 TAAAATTTTTTATTT
1 TTAAATTTTAAATTT
*
102466832 TTAAAATTTTTAA-TT
1 TT-AAATTTTAAATTT
102466847 TTAAATTTTAAATTT
1 TTAAATTTTAAATTT
102466862 TT
1 TT
102466864 TTTGAAGATT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
14 9 0.23
15 21 0.54
16 9 0.23
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TTAAATTTTAAATTT
Found at i:102467711 original size:15 final size:15
Alignment explanation
Indices: 102467676--102467713 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
102467666 AACCCTTAAA
102467676 CCATAAACCATAATT
1 CCATAAACCATAATT
102467691 CC-TAAACACATAA-T
1 CCATAAAC-CATAATT
102467705 CCATAAACC
1 CCATAAACC
102467714 TTAAAACCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (15 bp):
CCATAAACCATAATT
Found at i:102467718 original size:22 final size:22
Alignment explanation
Indices: 102467669--102467718 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
102467659 ACCCCCCAAC
*
102467669 CCTTAAACCATAAACCATAATT
1 CCTTAAACCATAAACCATAATA
*
102467691 CC-TAAACACATAATCCATAA-A
1 CCTTAAAC-CATAAACCATAATA
102467712 CCTTAAA
1 CCTTAAA
102467719 ACCTTAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (22 bp):
CCTTAAACCATAAACCATAATA
Found at i:102467867 original size:7 final size:7
Alignment explanation
Indices: 102467855--102467987 Score: 51
Period size: 7 Copynumber: 19.0 Consensus size: 7
102467845 ATTAATTAAT
102467855 CTAAACC
1 CTAAACC
102467862 CTAAACTC
1 CTAAAC-C
* *
102467870 ATAATCC
1 CTAAACC
102467877 CTAAACC
1 CTAAACC
*
102467884 CTAAATC
1 CTAAACC
* *
102467891 ATAAATC
1 CTAAACC
*
102467898 CTAAAAC
1 CTAAACC
* *
102467905 ATAAGCC
1 CTAAACC
102467912 CTAAACC
1 CTAAACC
* *
102467919 ATAAACA
1 CTAAACC
*
102467926 AT-AA-C
1 CTAAACC
*
102467931 CTTAACC
1 CTAAACC
*
102467938 CTTAACC
1 CTAAACC
102467945 ACT-AACTC
1 -CTAAAC-C
102467953 CT-AACAC
1 CTAAAC-C
102467960 CTAAACC
1 CTAAACC
*
102467967 TTAAACC
1 CTAAACC
*
102467974 C-CAACC
1 CTAAACC
102467980 CTTAAACC
1 C-TAAACC
102467988 ACCCTTAAAC
Statistics
Matches: 96, Mismatches: 22, Indels: 15
0.72 0.17 0.11
Matches are distributed among these distances:
5 1 0.01
6 9 0.09
7 71 0.74
8 15 0.16
ACGTcount: A:0.44, C:0.35, G:0.01, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:102467900 original size:14 final size:14
Alignment explanation
Indices: 102467878--102467924 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
102467868 TCATAATCCC
*
102467878 TAAACCCTAAATCA
1 TAAACCCTAAAACA
*
102467892 TAAATCCTAAAACA
1 TAAACCCTAAAACA
* *
102467906 TAAGCCCTAAACCA
1 TAAACCCTAAAACA
102467920 TAAAC
1 TAAAC
102467925 AATAACCTTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.51, C:0.28, G:0.02, T:0.19
Consensus pattern (14 bp):
TAAACCCTAAAACA
Found at i:102467904 original size:22 final size:22
Alignment explanation
Indices: 102467855--102467902 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
102467845 ATTAATTAAT
102467855 CTAAACCCTAAACTCATAATCC
1 CTAAACCCTAAACTCATAATCC
102467877 CTAAACCCTAAA-TCATAAAT-C
1 CTAAACCCTAAACTCAT-AATCC
102467898 CTAAA
1 CTAAA
102467903 ACATAAGCCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (22 bp):
CTAAACCCTAAACTCATAATCC
Found at i:102467914 original size:35 final size:35
Alignment explanation
Indices: 102467852--102467923 Score: 92
Period size: 35 Copynumber: 2.1 Consensus size: 35
102467842 AACATTAATT
* * *
102467852 AATCTAAACCCTAAACTCATAATCCCTAAACCCTA
1 AATCTAAACCCTAAACACATAAGCCCTAAACCATA
*
102467887 AATCATAAATCCTAAA-ACATAAGCCCTAAACCATA
1 AATC-TAAACCCTAAACACATAAGCCCTAAACCATA
102467922 AA
1 AA
102467924 CAATAACCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 22 0.69
36 10 0.31
ACGTcount: A:0.49, C:0.29, G:0.01, T:0.21
Consensus pattern (35 bp):
AATCTAAACCCTAAACACATAAGCCCTAAACCATA
Found at i:102472960 original size:54 final size:54
Alignment explanation
Indices: 102472900--102473007 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
102472890 TGAAAGTAAA
* * *
102472900 AAAAAATATGATTTGTCATTCTTCTAAG-GTAAAGAAATAAGGATGGCGTGGAAT
1 AAAAAATATGATTTATCATTCTTCTAAGAG-AAAAAAATAAGGATGACGTGGAAT
* * *
102472954 AAAAAATATGATTTATTATTTTTCTATGAGAAAAAAATAAGGATGACGTGGAAT
1 AAAAAATATGATTTATCATTCTTCTAAGAGAAAAAAATAAGGATGACGTGGAAT
102473008 TAGAGTTTTA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 46 0.98
55 1 0.02
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (54 bp):
AAAAAATATGATTTATCATTCTTCTAAGAGAAAAAAATAAGGATGACGTGGAAT
Found at i:102480833 original size:85 final size:86
Alignment explanation
Indices: 102480732--102480888 Score: 235
Period size: 85 Copynumber: 1.8 Consensus size: 86
102480722 AAGTTCAGGC
* *
102480732 CCCAATATGGGAACAATTGTCAAGTCTAAGGACTAATTTGGAC-AAAAAAGGTTTAAACCCTAAT
1 CCCAATATGGGAACAATTGTCAAGTCTAAGGACTAACTTGGACAAAAAAAAGTTTAAACCCTAAT
102480796 ATGAAAATAGTTGTCTAGTTG
66 ATGAAAATAGTTGTCTAGTTG
* * * * *
102480817 CCCAATGTGGGAACAATTGTTAAGTTTAGGGCCTAACTTGGACAAAAAAAAGTTTAAACCCTAAT
1 CCCAATATGGGAACAATTGTCAAGTCTAAGGACTAACTTGGACAAAAAAAAGTTTAAACCCTAAT
*
102480882 GTGAAAA
66 ATGAAAA
102480889 AAATTATCAA
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
85 37 0.59
86 26 0.41
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (86 bp):
CCCAATATGGGAACAATTGTCAAGTCTAAGGACTAACTTGGACAAAAAAAAGTTTAAACCCTAAT
ATGAAAATAGTTGTCTAGTTG
Found at i:102481788 original size:3 final size:3
Alignment explanation
Indices: 102481780--102481819 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
102481770 AATGGAAATT
* *
102481780 ATA ATA ATA AAA ATA ATA ACA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
102481820 AACTTATGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:102483949 original size:16 final size:17
Alignment explanation
Indices: 102483918--102483950 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
102483908 ATAAAATTTT
102483918 AATTTTATACTTAAAAA
1 AATTTTATACTTAAAAA
*
102483935 AATTTT-TATTTAAAAA
1 AATTTTATACTTAAAAA
102483951 TTCAGTACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
AATTTTATACTTAAAAA
Found at i:102484523 original size:27 final size:27
Alignment explanation
Indices: 102484491--102484559 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
102484481 TTGTGCCTTC
*
102484491 CTGACAGGCTCAACTAGTTGAGCCTAT
1 CTGACAGGCACAACTAGTTGAGCCTAT
* *
102484518 CTGACAGGCACGACTAGTTGTGCCT-T
1 CTGACAGGCACAACTAGTTGAGCCTAT
**
102484544 CTTGGTAGGCACAACT
1 C-TGACAGGCACAACT
102484560 GGTGGGGCCC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.06
27 33 0.94
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (27 bp):
CTGACAGGCACAACTAGTTGAGCCTAT
Found at i:102484581 original size:26 final size:26
Alignment explanation
Indices: 102484550--102484600 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
102484540 CCTTCTTGGT
102484550 AGGCACAACTGGTGGGGCCCACATGA
1 AGGCACAACTGGTGGGGCCCACATGA
*
102484576 AGGCACAATTGGTGGGGCCCACATG
1 AGGCACAACTGGTGGGGCCCACATG
102484601 CTTAATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.35, T:0.14
Consensus pattern (26 bp):
AGGCACAACTGGTGGGGCCCACATGA
Found at i:102488243 original size:33 final size:32
Alignment explanation
Indices: 102488189--102488301 Score: 91
Period size: 33 Copynumber: 3.4 Consensus size: 32
102488179 CTTGAGCCGA
* ** *
102488189 GAGGAGTAGAATATGGAGGTGGATATGGGCTGG
1 GAGGAGTAGAGTACAGAGGTGGATA-AGGCTGG
* * *
102488222 GAGGAGTAGAGTACAGCGGTGGATACGGCTCTG
1 GAGGAGTAGAGTACAGAGGTGGATAAGGCT-GG
* * * *
102488255 GAGGAGTTGAGTATATAGGTGGATACAGGCCGG
1 GAGGAGTAGAGTACAGAGGTGGATA-AGGCTGG
*
102488288 AAGGAGTAGAGTAC
1 GAGGAGTAGAGTAC
102488302 TGAGATAAAT
Statistics
Matches: 62, Mismatches: 16, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
32 4 0.06
33 55 0.89
34 3 0.05
ACGTcount: A:0.28, C:0.09, G:0.43, T:0.19
Consensus pattern (32 bp):
GAGGAGTAGAGTACAGAGGTGGATAAGGCTGG
Found at i:102490346 original size:22 final size:22
Alignment explanation
Indices: 102490312--102490375 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
102490302 TCAACATTTT
*
102490312 AATAAATCA-ATAAAAATTATCA
1 AATAAAT-ATATAAAAATTATAA
*
102490334 AATAAATATATAATAA-TATAA
1 AATAAATATATAAAAATTATAA
*
102490355 AAGTACATTATATAAAAATTA
1 AA-TA-AATATATAAAAATTA
102490376 CATTAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.21
22 15 0.44
23 10 0.29
24 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (22 bp):
AATAAATATATAAAAATTATAA
Found at i:102490711 original size:114 final size:114
Alignment explanation
Indices: 102490424--102490864 Score: 707
Period size: 112 Copynumber: 3.9 Consensus size: 114
102490414 ATACTAACAC
* * * *
102490424 AAAATAACTATAAAAGTATTTTTTT-AAATACATTACTAAAAAAAATCACAATACATTAATACAC
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACT-AAAAAAATCACAATACACTAAT--AC
102490488 ACTAAACCACTAAACACTAACAA--TATATAACCTAATCTTAAATTACTAAT
63 ACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
102490538 AAAATAGCTAT-AAAATA-TTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACT
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACT
102490601 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
66 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
* *
102490650 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATTACAATACGCTAAT--ACT
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACT
102490713 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
66 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
*
102490762 AAAATAGCTATAAAATTATTTTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAATACA
1 AAAATAGCTATAAAAATA-TTTTTTT-AAAATATATTACTAAAAAAATCACAATACACTAATACA
* *
102490827 CTAAACTACTAAACACTAACAATTTATATAACCAAATC
64 CTAAACCACTAAACACTAACAATTTATATAACCTAATC
102490865 AACTATAAAA
Statistics
Matches: 307, Mismatches: 11, Indels: 16
0.92 0.03 0.05
Matches are distributed among these distances:
110 25 0.08
112 134 0.44
113 29 0.09
114 82 0.27
116 37 0.12
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.31
Consensus pattern (114 bp):
AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACT
AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
Found at i:102490831 original size:228 final size:223
Alignment explanation
Indices: 102490424--102490864 Score: 706
Period size: 228 Copynumber: 1.9 Consensus size: 223
102490414 ATACTAACAC
* *
102490424 AAAATAACTATAAAAGTATTTTTTTAAATACATTACTAAAAAAAATCACAATACATTAATACACA
1 AAAATAACTATAAAAATATTTTTTTAAATACATTACTAAAAAAAATCACAATACACTAAT--A-A
102490489 CTAAACCACTAAACACTAACAATATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAT
63 CTAAACCACTAAACACTAACAATATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAT
102490554 ATTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAAC
128 ATTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAAC
*
102490619 AATTTATATAACCTAATCTTAAATTACTAAT
193 AATTTATATAACCAAATCTTAAATTACTAAT
* * * *
102490650 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACT-AAAAAAATTACAATACGCTAAT-ACT
1 AAAATAACTATAAAAATATTTTTTT-AAATACATTACTAAAAAAAATCACAATACACTAATAACT
102490713 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAT
65 AAACCACTAAACACTAACAA--TATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAA-
*
102490778 TATTTTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACTACTAAACAC
127 TA--TTTTTT-AAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACAC
102490843 TAACAATTTATATAACCAAATC
189 TAACAATTTATATAACCAAATC
102490865 AACTATAAAA
Statistics
Matches: 200, Mismatches: 8, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
222 23 0.12
224 42 0.21
225 2 0.01
226 42 0.21
227 17 0.09
228 74 0.37
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.31
Consensus pattern (223 bp):
AAAATAACTATAAAAATATTTTTTTAAATACATTACTAAAAAAAATCACAATACACTAATAACTA
AACCACTAAACACTAACAATATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAATATT
TTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAAT
TTATATAACCAAATCTTAAATTACTAAT
Found at i:102491156 original size:13 final size:13
Alignment explanation
Indices: 102491138--102491194 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 13
102491128 TTACATTTTT
102491138 TTTCTTCTTCTTC
1 TTTCTTCTTCTTC
102491151 TTTCTTCTTTCTTC
1 TTTCTTC-TTCTTC
* *
102491165 -TTCTCCTTCTCC
1 TTTCTTCTTCTTC
*
102491177 TTTC-TCTCCTTTC
1 TTTCTTCTTC-TTC
102491190 TTTCT
1 TTTCT
102491195 CACAGTCGGT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
12 8 0.23
13 21 0.60
14 6 0.17
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (13 bp):
TTTCTTCTTCTTC
Found at i:102491157 original size:7 final size:7
Alignment explanation
Indices: 102491138--102491166 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
102491128 TTACATTTTT
102491138 TTTCTTC
1 TTTCTTC
102491145 -TTCTTC
1 TTTCTTC
102491151 TTTCTTC
1 TTTCTTC
102491158 TTTCTTC
1 TTTCTTC
102491165 TT
1 TT
102491167 CTCCTTCTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTCTTC
Found at i:102491163 original size:20 final size:20
Alignment explanation
Indices: 102491138--102491195 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
102491128 TTACATTTTT
*
102491138 TTTCTTCTTCTTCTTTCTTC
1 TTTCTTCTTCTTCTTTCTCC
*
102491158 TTTCTTCTTC-TCCTTCTCC
1 TTTCTTCTTCTTCTTTCTCC
*
102491177 TTTC-TCTCCTTTCTTTCTC
1 TTTCTTCTTC-TTCTTTCTC
102491196 ACAGTCGGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
18 4 0.12
19 11 0.34
20 17 0.53
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTCTTCTTCTTCTTTCTCC
Found at i:102495737 original size:18 final size:18
Alignment explanation
Indices: 102495699--102495752 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 18
102495689 CAATGACAAT
*
102495699 ATTTATATTTATAA-TTT-
1 ATTTAT-TTTTTAATTTTA
102495716 ATTTATTTTTTAATTTTA
1 ATTTATTTTTTAATTTTA
102495734 ATTT-TTTTTATAATTTTA
1 ATTTATTTTT-TAATTTTA
102495752 A
1 A
102495753 AGGTTTTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
16 6 0.18
17 14 0.42
18 13 0.39
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTATTTTTTAATTTTA
Found at i:102504339 original size:21 final size:21
Alignment explanation
Indices: 102504315--102504355 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
102504305 TGGAAATAAA
*
102504315 TATATAAAAAATTTAGAAAAC
1 TATATAAAAAATCTAGAAAAC
*
102504336 TATATAAATAATCTAGAAAA
1 TATATAAAAAATCTAGAAAA
102504356 AAAACATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (21 bp):
TATATAAAAAATCTAGAAAAC
Found at i:102504357 original size:23 final size:22
Alignment explanation
Indices: 102504295--102504357 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 22
102504285 ATGCTATAAA
*
102504295 ATATAAAAAA--TGGAAATAAAT
1 ATATAAAAAATCTAGAAA-AAAT
* *
102504316 ATATAAAAAATTTAG-AAAACT
1 ATATAAAAAATCTAGAAAAAAT
*
102504337 ATATAAATAATCTAGAAAAAA
1 ATATAAAAAATCTAGAAAAAA
102504358 AACATATAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
21 26 0.76
22 6 0.18
23 2 0.06
ACGTcount: A:0.65, C:0.03, G:0.06, T:0.25
Consensus pattern (22 bp):
ATATAAAAAATCTAGAAAAAAT
Found at i:102504674 original size:7 final size:7
Alignment explanation
Indices: 102504646--102504686 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
102504636 TTTATAAAAA
102504646 ATATTAT
1 ATATTAT
* *
102504653 AAATTTT
1 ATATTAT
102504660 AT-TTAT
1 ATATTAT
102504666 ATATTAT
1 ATATTAT
102504673 ATATTAT
1 ATATTAT
102504680 ATATTAT
1 ATATTAT
102504687 CTTTTTACGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 5 0.17
7 24 0.83
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
ATATTAT
Found at i:102505171 original size:15 final size:15
Alignment explanation
Indices: 102505153--102505182 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
102505143 TTAAATAAAT
102505153 TTTTAGAATTATATA
1 TTTTAGAATTATATA
*
102505168 TTTTAGAATTTTATA
1 TTTTAGAATTATATA
102505183 AAAAATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (15 bp):
TTTTAGAATTATATA
Found at i:102505326 original size:20 final size:20
Alignment explanation
Indices: 102505301--102505361 Score: 81
Period size: 20 Copynumber: 3.1 Consensus size: 20
102505291 AAATTTTATT
*
102505301 TTTATA-ATTTTTT-TATAA
1 TTTATATATTTTTTCTAGAA
*
102505319 TTTATATATTTTTTCTAGAT
1 TTTATATATTTTTTCTAGAA
*
102505339 TTTATATATTTTTTCTAAAA
1 TTTATATATTTTTTCTAGAA
102505359 TTT
1 TTT
102505362 TTATGTATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.16
19 7 0.19
20 24 0.65
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTATATATTTTTTCTAGAA
Found at i:102507718 original size:21 final size:21
Alignment explanation
Indices: 102507694--102507735 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
102507684 CATCACTTAA
*
102507694 TACGTTAGTATAACATAATTT
1 TACGTCAGTATAACATAATTT
*
102507715 TACGTCGGTATAACATAATTT
1 TACGTCAGTATAACATAATTT
102507736 ACAAATAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (21 bp):
TACGTCAGTATAACATAATTT
Found at i:102509406 original size:22 final size:22
Alignment explanation
Indices: 102509381--102509424 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
102509371 AAACCACAAC
102509381 ACGAAGGTTTTACAATCTCAAA
1 ACGAAGGTTTTACAATCTCAAA
102509403 ACGAAGGTTTTACAATCTCAAA
1 ACGAAGGTTTTACAATCTCAAA
102509425 TGCGCTCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (22 bp):
ACGAAGGTTTTACAATCTCAAA
Found at i:102512825 original size:10 final size:10
Alignment explanation
Indices: 102512810--102512834 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
102512800 AGTAGTTATT
102512810 TTTCTGTTAC
1 TTTCTGTTAC
102512820 TTTCTGTTAC
1 TTTCTGTTAC
102512830 TTTCT
1 TTTCT
102512835 TTCCTTGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.20, G:0.08, T:0.64
Consensus pattern (10 bp):
TTTCTGTTAC
Found at i:102517685 original size:24 final size:25
Alignment explanation
Indices: 102517656--102517713 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 25
102517646 AATGAAATAG
*
102517656 AAATTATAAAAATATA-GATTATTA
1 AAATTATAAAAATATATGATTATAA
* **
102517680 AAATTATAAAATTATATTTTTATAA
1 AAATTATAAAAATATATGATTATAA
102517705 AAATTATAA
1 AAATTATAA
102517714 TTTAATTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 15 0.52
25 14 0.48
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (25 bp):
AAATTATAAAAATATATGATTATAA
Found at i:102517821 original size:23 final size:25
Alignment explanation
Indices: 102517787--102517843 Score: 75
Period size: 22 Copynumber: 2.4 Consensus size: 25
102517777 TATACTTAAA
*
102517787 AAATATATTAAAATTTTTAA-A-TAT
1 AAATATAAT-AAATTTTTAATATTAT
102517811 -AATATAATAAATTTTTAATATTAT
1 AAATATAATAAATTTTTAATATTAT
102517835 AAATATAAT
1 AAATATAAT
102517844 TTATGCTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 10 0.34
23 8 0.28
24 3 0.10
25 8 0.28
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
AAATATAATAAATTTTTAATATTAT
Found at i:102518020 original size:12 final size:12
Alignment explanation
Indices: 102518003--102518028 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
102517993 ATTTTTTTTT
102518003 ATTTTAGAAATA
1 ATTTTAGAAATA
102518015 ATTTTAGAAATA
1 ATTTTAGAAATA
102518027 AT
1 AT
102518029 AGATATGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (12 bp):
ATTTTAGAAATA
Found at i:102519052 original size:32 final size:32
Alignment explanation
Indices: 102519016--102519082 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
102519006 AGACAAGTTG
102519016 AAACTTTAGGGGTTACAAGCTCTCATGACCTA
1 AAACTTTAGGGGTTACAAGCTCTCATGACCTA
*
102519048 AAACTTTAGGGGTTACAAGCTCTCATGACTTA
1 AAACTTTAGGGGTTACAAGCTCTCATGACCTA
102519080 AAA
1 AAA
102519083 AATATAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.28
Consensus pattern (32 bp):
AAACTTTAGGGGTTACAAGCTCTCATGACCTA
Found at i:102519326 original size:29 final size:29
Alignment explanation
Indices: 102519290--102519346 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
102519280 GCTTATATGA
** *
102519290 ATTTTAATATTTTTTTAT-ATTTTTTAAG
1 ATTTTAATACATTTTTATAATATTTTAAG
102519318 ATTTCTAATACATTTTTATAATATTTTAA
1 ATTT-TAATACATTTTTATAATATTTTAA
102519347 ATATGTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.17
29 12 0.50
30 8 0.33
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (29 bp):
ATTTTAATACATTTTTATAATATTTTAAG
Found at i:102519343 original size:11 final size:11
Alignment explanation
Indices: 102519294--102519401 Score: 55
Period size: 11 Copynumber: 9.7 Consensus size: 11
102519284 ATATGAATTT
102519294 TAATATTTTT-
1 TAATATTTTTA
*
102519304 TTATATTTTT-
1 TAATATTTTTA
* *
102519314 TAAGATTTCTA
1 TAATATTTTTA
*
102519325 -ATACATTTTTA
1 TA-ATATTTTTA
102519336 TAATA-TTTTA
1 TAATATTTTTA
102519346 -AATATGTTTTA
1 TAATAT-TTTTA
*
102519357 TTAATTTTTTTAA
1 -TAATATTTTT-A
* *
102519370 AAATTATAATTTA
1 TAA-TAT-TTTTA
*
102519383 TTATATTTTTA
1 TAATATTTTTA
102519394 TAATATTT
1 TAATATTT
102519402 ATAAGTTTTT
Statistics
Matches: 73, Mismatches: 15, Indels: 19
0.68 0.14 0.18
Matches are distributed among these distances:
9 4 0.05
10 22 0.30
11 25 0.34
12 10 0.14
13 9 0.12
14 3 0.04
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (11 bp):
TAATATTTTTA
Found at i:102519387 original size:10 final size:9
Alignment explanation
Indices: 102519373--102519415 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
102519363 TTTTTAAAAA
102519373 TTATAATTT
1 TTATAATTT
102519382 ATTAT-ATTT
1 -TTATAATTT
*
102519391 TTATAATAT
1 TTATAATTT
102519400 TTATAAGTTT
1 TTATAA-TTT
102519410 TTATAA
1 TTATAA
102519416 GTTGATGTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 4 0.14
9 13 0.45
10 12 0.41
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (9 bp):
TTATAATTT
Found at i:102519403 original size:27 final size:28
Alignment explanation
Indices: 102519353--102519414 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
102519343 TTAAATATGT
*
102519353 TTTATTA-ATTTTTTTAAAAATTATAA-
1 TTTATTATATTTTTATAAAAATTATAAG
* *
102519379 TTTATTATATTTTTATAATATTTATAAG
1 TTTATTATATTTTTATAAAAATTATAAG
102519407 TTT-TTATA
1 TTTATTATA
102519415 AGTTGATGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.23
27 21 0.68
28 3 0.10
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (28 bp):
TTTATTATATTTTTATAAAAATTATAAG
Found at i:102521679 original size:3 final size:3
Alignment explanation
Indices: 102521673--102521713 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
102521663 AAATATACAC
*
102521673 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
102521714 TTGAAATACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:102521697 original size:147 final size:151
Alignment explanation
Indices: 102521529--102521847 Score: 416
Period size: 147 Copynumber: 2.1 Consensus size: 151
102521519 ATATATATGT
* * * *
102521529 TAATAATGATGATAATGATAATAATACTAGCAATAATAATGAAATACAAAAA-AAAACAAATATA
1 TAATAATAATAATAATAATAATAATAATAGCAATAATAATGAAATACAAAAACAAAACAAATATA
* * *
102521593 ATATAATAATGTTAAAATAAAGTAATT-AAAAATAGTACTATATAT-AA-ATATAT-ATATACGT
66 ATA-AA-AATATTAAAATAAAGTAATTAAAAAATAATACTATATATAAATATATATAATATACAT
102521654 ATATAAT-AAAAATATACACTAA
129 ATATAATAAAAAATATACACTAA
* * ***
102521676 TAATAATAATAATAATAATAATAATAATAGTAATAATATTGAAATACAAAAAGCAAATGTAATAT
1 TAATAATAATAATAATAATAATAATAATAGCAATAATAATGAAATACAAAAA-CAAAACAAATAT
*
102521741 AATAAAAATATTAAAATAAAGTAATTAAAAAATAATACTATGTATAAATATATATACATATACAT
65 AATAAAAATATTAAAATAAAGTAATTAAAAAATAATACTATATATAAATATATATA-ATATACAT
102521806 ATATAATAAAAAAATATACACTAA
129 ATATAAT-AAAAAATATACACTAA
*
102521830 TATGTAATAATAATAATA
1 TA-ATAATAATAATAATA
102521848 GTGATTAGAT
Statistics
Matches: 148, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
147 65 0.44
148 18 0.12
149 14 0.09
150 6 0.04
152 14 0.09
154 17 0.11
155 14 0.09
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.31
Consensus pattern (151 bp):
TAATAATAATAATAATAATAATAATAATAGCAATAATAATGAAATACAAAAACAAAACAAATATA
ATAAAAATATTAAAATAAAGTAATTAAAAAATAATACTATATATAAATATATATAATATACATAT
ATAATAAAAAATATACACTAA
Found at i:102525181 original size:16 final size:15
Alignment explanation
Indices: 102525148--102525181 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
102525138 AATCATTATG
102525148 TTTTAATCTGATCAT
1 TTTTAATCTGATCAT
102525163 TTTTAATCTTGAT-AT
1 TTTTAATC-TGATCAT
102525178 TTTT
1 TTTT
102525182 CAAATTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.24, C:0.09, G:0.06, T:0.62
Consensus pattern (15 bp):
TTTTAATCTGATCAT
Found at i:102528473 original size:3 final size:3
Alignment explanation
Indices: 102528465--102528501 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
102528455 AATGAATCGA
102528465 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
102528502 GACTTAACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:102534908 original size:39 final size:34
Alignment explanation
Indices: 102534829--102534907 Score: 149
Period size: 34 Copynumber: 2.3 Consensus size: 34
102534819 TGAGAAACAA
102534829 AAATGTCATGTTTTTATTTATTTTCTTGTTGAAC
1 AAATGTCATGTTTTTATTTATTTTCTTGTTGAAC
*
102534863 AAATGTCATGTTTTTATTTTTTTTCTTGTTGAAC
1 AAATGTCATGTTTTTATTTATTTTCTTGTTGAAC
102534897 AAATGTCATGT
1 AAATGTCATGT
102534908 CTTTCTTTGT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.24, C:0.09, G:0.13, T:0.54
Consensus pattern (34 bp):
AAATGTCATGTTTTTATTTATTTTCTTGTTGAAC
Found at i:102535015 original size:16 final size:16
Alignment explanation
Indices: 102534994--102535027 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
102534984 TTTTGAAATG
102534994 TTATTTTTATATAATT
1 TTATTTTTATATAATT
* *
102535010 TTATTTTTTTATCATT
1 TTATTTTTATATAATT
102535026 TT
1 TT
102535028 GATTAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATTTTTATATAATT
Found at i:102536868 original size:37 final size:37
Alignment explanation
Indices: 102536834--102536915 Score: 92
Period size: 37 Copynumber: 2.2 Consensus size: 37
102536824 AGGTTTTAGA
*
102536834 GACTAAATCGTAAAAATTATAAAATTTGAATTTTAAG
1 GACTAAATCGTAAAAACTATAAAATTTGAATTTTAAG
** * * ** *
102536871 GACTATTTTGTAAAAACTGTAAAATTTGAGGTATAAG
1 GACTAAATCGTAAAAACTATAAAATTTGAATTTTAAG
102536908 GACTAAAT
1 GACTAAAT
102536916 ATTGACATAA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.34
Consensus pattern (37 bp):
GACTAAATCGTAAAAACTATAAAATTTGAATTTTAAG
Found at i:102541490 original size:25 final size:24
Alignment explanation
Indices: 102541449--102541532 Score: 64
Period size: 25 Copynumber: 3.4 Consensus size: 24
102541439 GCTAAGTAAT
*
102541449 GGGAAGCTCATA-TGAGCTGTATATC
1 GGGAAGCTCA-AGAGAGCT-TATATC
*
102541474 GGGAAGCTTAAGAGAGCCATTA-ATC
1 GGGAAGCTCAAGAGAG-C-TTATATC
* **
102541499 GGGAAGCTCATGAGAGCCAAATATC
1 GGGAAGCTCAAGAGAG-CTTATATC
102541524 GGGAAGCTC
1 GGGAAGCTC
102541533 GTGAGAGCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
24 2 0.04
25 43 0.88
26 3 0.06
27 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.30, T:0.20
Consensus pattern (24 bp):
GGGAAGCTCAAGAGAGCTTATATC
Found at i:102541537 original size:25 final size:25
Alignment explanation
Indices: 102541469--102541542 Score: 96
Period size: 25 Copynumber: 3.0 Consensus size: 25
102541459 TATGAGCTGT
* *
102541469 ATATCGGGAAGCTTAAGAGAGCC-A
1 ATATCGGGAAGCTCATGAGAGCCAA
*
102541493 TTAATCGGGAAGCTCATGAGAGCCAA
1 AT-ATCGGGAAGCTCATGAGAGCCAA
*
102541519 ATATCGGGAAGCTCGTGAGAGCCA
1 ATATCGGGAAGCTCATGAGAGCCA
102541543 TGGTGTGTCC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
24 1 0.02
25 40 0.93
26 2 0.05
ACGTcount: A:0.34, C:0.19, G:0.30, T:0.18
Consensus pattern (25 bp):
ATATCGGGAAGCTCATGAGAGCCAA
Found at i:102542647 original size:20 final size:20
Alignment explanation
Indices: 102542622--102542675 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
102542612 AGGGGCACAT
* *
102542622 GCCCGTGTGGCTTGGGACAC
1 GCCCGTGTGGCCTGGAACAC
*
102542642 GCCCGTGTGGCCTGGAACAT
1 GCCCGTGTGGCCTGGAACAC
102542662 GCCCGTGTGGCCTG
1 GCCCGTGTGGCCTG
102542676 CCCATGTGCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.09, C:0.31, G:0.39, T:0.20
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGAACAC
Found at i:102544093 original size:9 final size:9
Alignment explanation
Indices: 102544053--102544092 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
102544043 AAATATAATA
*
102544053 AATAATAAT
1 AATAACAAT
102544062 AATAACAAT
1 AATAACAAT
102544071 AATAACAAT
1 AATAACAAT
*
102544080 AATAGCAAT
1 AATAACAAT
102544089 AATA
1 AATA
102544093 GTAAAAATAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.65, C:0.07, G:0.03, T:0.25
Consensus pattern (9 bp):
AATAACAAT
Found at i:102544278 original size:3 final size:3
Alignment explanation
Indices: 102544272--102544518 Score: 90
Period size: 3 Copynumber: 80.7 Consensus size: 3
102544262 ATAGTAAATG
* * *
102544272 TAA TAA TAA TAA TAA TAA TAA TAT TAA GT-A TAG T-A TAAA TAA TATG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TA-A
* * *
102544318 TACA TAA CAG TAA TAA TAA TAA GTAA CAA TAA TAA TAA TAA TAA T-A
1 TA-A TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
* *
102544364 TAGA -AA TTCAA -AA -AA GTAA -ACA TAA T-A TAA TGA TAT TAA -AA
1 TA-A TAA -T-AA TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA
* * *
102544405 TAA -AA T-A TACA CTAA TAT TTA TAAA TAA TAA TAG TAA -ATA TAA TAA
1 TAA TAA TAA TA-A -TAA TAA TAA T-AA TAA TAA TAA TAA TA-A TAA TAA
* * * *
102544451 TAA TAA TAA GT-A TAG T-A TAAA TAA TATG TACA TAA CAG TAA TAA TAA
1 TAA TAA TAA -TAA TAA TAA T-AA TAA TA-A TA-A TAA TAA TAA TAA TAA
102544498 TAA GTAA TAA TAA TAA TAA TA
1 TAA -TAA TAA TAA TAA TAA TA
102544519 TAGAAATTCA
Statistics
Matches: 182, Mismatches: 32, Indels: 60
0.66 0.12 0.22
Matches are distributed among these distances:
2 21 0.12
3 128 0.70
4 29 0.16
5 4 0.02
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:102544490 original size:23 final size:22
Alignment explanation
Indices: 102544445--102544518 Score: 64
Period size: 22 Copynumber: 3.4 Consensus size: 22
102544435 ATAGTAAATA
*
102544445 TAATAATAATAA-TAAGT-ATAG
1 TAATAATAATAAGTAA-TAACAG
*
102544466 T-ATAAATAATATGTACATAACAG
1 TAAT-AATAATAAGTA-ATAACAG
* *
102544489 TAATAATAATAAGTAATAATAA
1 TAATAATAATAAGTAATAACAG
102544511 TAATAATA
1 TAATAATA
102544519 TAGAAATTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
20 2 0.05
21 8 0.19
22 16 0.37
23 15 0.35
24 2 0.05
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.32
Consensus pattern (22 bp):
TAATAATAATAAGTAATAACAG
Found at i:102546721 original size:52 final size:52
Alignment explanation
Indices: 102546623--102546723 Score: 141
Period size: 52 Copynumber: 1.9 Consensus size: 52
102546613 TTCACATCAC
* * *
102546623 ACCGATGCCATAACCCAGCTATGGTCTTATACGGGAGTATGAATCACATTGT
1 ACCGATGCCATAACCCAGCTATGGTCTTATACGGAAGCATCAATCACATTGT
* *
102546675 ACCGATGCCATAGCCTAGCTATGGTCTTATACGGAAGCA-CATATCACAT
1 ACCGATGCCATAACCCAGCTATGGTCTTATACGGAAGCATCA-ATCACAT
102546724 CTTTTCCGTC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
51 1 0.02
52 42 0.98
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (52 bp):
ACCGATGCCATAACCCAGCTATGGTCTTATACGGAAGCATCAATCACATTGT
Found at i:102551867 original size:22 final size:23
Alignment explanation
Indices: 102551829--102551875 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
102551819 TGTTCGAATG
102551829 CTTTCTGTTCTCTTTTCTCTATT
1 CTTTCTGTTCTCTTTTCTCTATT
* *
102551852 CTTTTTGTT-TCTTTTCTTTATT
1 CTTTCTGTTCTCTTTTCTCTATT
102551874 CT
1 CT
102551876 ATTTCTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.04, C:0.21, G:0.04, T:0.70
Consensus pattern (23 bp):
CTTTCTGTTCTCTTTTCTCTATT
Found at i:102555809 original size:80 final size:80
Alignment explanation
Indices: 102555676--102556024 Score: 479
Period size: 80 Copynumber: 4.3 Consensus size: 80
102555666 TAATCTTTTT
* ** *
102555676 ACTCTATCAAGTAAAACCTAATTATCATACACACCT-TCCTTTGCTGCCAACACTTAACACCAAT
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCT-CTCCGCCGCCAACACTTAACACCAAT
102555740 CCTAAAACTCCTTAGA-
65 CCTAAAACTCCTTA-AC
* *
102555756 ACTCTATCAAGTAAAACCTAAATATCATGCACACCTCTATCCGCCGCCAACACTTAACACCAATC
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCGCCGCCAACACTTAACACCAATC
* * *
102555821 CTTAAGCTCCTTAAT
66 CTAAAACTCCTTAAC
* * *
102555836 ATTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCACCGCCAACACTTAATACCAATC
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCGCCGCCAACACTTAACACCAATC
*
102555901 CTAAAACTCATTAAC
66 CTAAAACTCCTTAAC
102555916 ACTCTATCAAGTAAAACCTAAATATCATACACACCT-TCCTCCGCCGCCAACACTTAACACCAAT
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCT-CTCCGCCGCCAACACTTAACACCAAT
* *
102555980 TCTAAAACTCTTTAAC
65 CCTAAAACTCCTTAAC
* * *
102555996 ATTTTATCAAGTAAAAACTAAATACTCAT
1 ACTCTATCAAGTAAAACCTAAATA-TCAT
102556025 TAATACTCTT
Statistics
Matches: 240, Mismatches: 25, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
79 2 0.01
80 233 0.97
81 5 0.02
ACGTcount: A:0.38, C:0.31, G:0.04, T:0.26
Consensus pattern (80 bp):
ACTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCGCCGCCAACACTTAACACCAATC
CTAAAACTCCTTAAC
Found at i:102556131 original size:114 final size:113
Alignment explanation
Indices: 102555900--102556137 Score: 336
Period size: 114 Copynumber: 2.1 Consensus size: 113
102555890 TAATACCAAT
* *
102555900 CCTAAA-ACTCATTAACACTCTATCAAGTAAAACCTAAATATCATACACACCTTCCTCCGCCGCC
1 CCTAAATACTCATTAACACTCTATAAAGTAAAACCTAAAGATCATACACACCTTCCTCCGCCGCC
* * *
102555964 AACACTTAACACCAATTCTAAAACTCTTTAACATTTTATCAAGTAAAA
66 AACACTTAAAACCAATTCTAAAACTCATTAACACTTTATCAAGTAAAA
* * * **
102556012 ACTAAATACTCATTAATACTCTTATAAAGTAAAACCTAAAGATCATTCACATTTTCCTCCGCCGC
1 CCTAAATACTCATTAACACTC-TATAAAGTAAAACCTAAAGATCATACACACCTTCCTCCGCCGC
* * *
102556077 CAACACTTAAAACCAGTTCTAAAACTCATTAATACTTTATCAAGTGAAA
65 CAACACTTAAAACCAATTCTAAAACTCATTAACACTTTATCAAGTAAAA
102556126 CCTAAATA-TCAT
1 CCTAAATACTCAT
102556138 GTGAACCTCC
Statistics
Matches: 110, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
112 5 0.05
113 17 0.15
114 88 0.80
ACGTcount: A:0.40, C:0.26, G:0.05, T:0.29
Consensus pattern (113 bp):
CCTAAATACTCATTAACACTCTATAAAGTAAAACCTAAAGATCATACACACCTTCCTCCGCCGCC
AACACTTAAAACCAATTCTAAAACTCATTAACACTTTATCAAGTAAAA
Found at i:102556137 original size:80 final size:77
Alignment explanation
Indices: 102556013--102556297 Score: 277
Period size: 80 Copynumber: 3.6 Consensus size: 77
102556003 CAAGTAAAAA
* * * *
102556013 CTAAATACTCATTAATACTCTTATAAAGTAAAACCTAAAGATCATTCACATTTTCCTCCGCCGCC
1 CTAAA-ACTCATTAATACT-TTATCAAGTAAAACCTAAATATCATTCA-A-CTTCCTCTGCCGCC
*
102556078 AACACTTAAAACCAGTT
62 AACACTTAACACCA-TT
* * * *
102556095 CTAAAACTCATTAATACTTTATCAAGTGAAACCTAAATATCATGTGAACCTCCTTTTGCCGCCAA
1 CTAAAACTCATTAATACTTTATCAAGTAAAACCTAAATATCAT-TCAACTTCC-TCTGCCGCCAA
*
102556160 CACTTAACACCAAT
64 CACTTAACACCATT
* * * * *
102556174 CTTAAAACTCCTTAACAC--TATCAAGTAAAACCTAAATATCATACATACCTCCCTCTGCCACCA
1 C-TAAAACTCATTAATACTTTATCAAGTAAAACCTAAATATCATTCA-A-CTTCCTCTGCCGCCA
*
102556237 ACACTTAACACCAATA
63 ACACTTAACACC-ATT
* * *
102556253 CTAAAACTCCTTAAAACTCTATCAAGTAAAACCTAAATACTCATT
1 CTAAAACTCATTAATACTTTATCAAGTAAAACCTAAATA-TCATT
102556298 GATACTCTAT
Statistics
Matches: 171, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
77 1 0.01
78 59 0.35
79 10 0.06
80 77 0.45
81 19 0.11
82 5 0.03
ACGTcount: A:0.39, C:0.28, G:0.05, T:0.28
Consensus pattern (77 bp):
CTAAAACTCATTAATACTTTATCAAGTAAAACCTAAATATCATTCAACTTCCTCTGCCGCCAACA
CTTAACACCATT
Found at i:102556173 original size:194 final size:190
Alignment explanation
Indices: 102555831--102556215 Score: 490
Period size: 194 Copynumber: 2.0 Consensus size: 190
102555821 CTTAAGCTCC
* * * *
102555831 TTAATATTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCACCGCCAACACTTAATAC
1 TTAATACTCTATAAAGTAAAACCTAAAGATCATACACACCTCTCTCCACCGCCAACACTTAAAAC
102555896 CAATCCTAAAACTCATTAACACTCTATCAAGTAAAACCTAAATATCATACACACCTTCCTCCGCC
66 CAATCCTAAAACTCATTAACACTCTATCAAGTAAAACCTAAATATCATACACACCTTCCTCCGCC
* *
102555961 GCCAACACTTAACACCAAT-TCTAAAACTCTTTAACATTTTATCAAGTAAAAACTAAATACTCA
131 GCCAACACTTAACACCAATCT-TAAAACTCCTTAACA--CTATCAAGTAAAAACTAAATA-TCA
* * * *
102556024 TTAATACTCTTATAAAGTAAAACCTAAAGATCATTCACA-TTTTCCTCCGCCGCCAACACTTAAA
1 TTAATACTC-TATAAAGTAAAACCTAAAGATCATACACACCTCT-CTCCACCGCCAACACTTAAA
* * * * * ** *
102556088 ACCAGTTCTAAAACTCATTAATACTTTATCAAGTGAAACCTAAATATCATGTGA-ACC-TCCTTT
64 ACCAATCCTAAAACTCATTAACACTCTATCAAGTAAAACCTAAATATCAT-ACACACCTTCC-TC
* *
102556151 TGCCGCCAACACTTAACACCAATCTTAAAACTCCTTAACACTATCAAGTAAAACCTAAATATCA
127 CGCCGCCAACACTTAACACCAATCTTAAAACTCCTTAACACTATCAAGTAAAAACTAAATATCA
102556215 T
1 T
102556216 ACATACCTCC
Statistics
Matches: 167, Mismatches: 20, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
191 4 0.02
192 19 0.11
193 13 0.08
194 129 0.77
195 2 0.01
ACGTcount: A:0.39, C:0.28, G:0.05, T:0.28
Consensus pattern (190 bp):
TTAATACTCTATAAAGTAAAACCTAAAGATCATACACACCTCTCTCCACCGCCAACACTTAAAAC
CAATCCTAAAACTCATTAACACTCTATCAAGTAAAACCTAAATATCATACACACCTTCCTCCGCC
GCCAACACTTAACACCAATCTTAAAACTCCTTAACACTATCAAGTAAAAACTAAATATCA
Found at i:102556224 original size:78 final size:78
Alignment explanation
Indices: 102556067--102556296 Score: 259
Period size: 78 Copynumber: 2.9 Consensus size: 78
102556057 TTCACATTTT
* * * * * *
102556067 CCTCCGCCGCCAACACTTAAAACCAGT-TCTAAAACTCATTAATACTTTATCAAGTGAAACCTAA
1 CCTCTGCCGCCAACACTTAACACCAATCT-TAAAACTCCTTAACAC--TATCAAGTAAAACCTAA
**
102556131 ATATCATGTGAACCTC
63 ATATCATGACAACCTC
* *
102556147 CTTTTGCCGCCAACACTTAACACCAATCTTAAAACTCCTTAACACTATCAAGTAAAACCTAAATA
1 CCTCTGCCGCCAACACTTAACACCAATCTTAAAACTCCTTAACACTATCAAGTAAAACCTAAATA
102556212 TCAT-ACATACCTC
66 TCATGACA-ACCTC
* *
102556225 CCTCTGCCACCAACACTTAACACCAATAC-TAAAACTCCTTAAAACTCTATCAAGTAAAACCTAA
1 CCTCTGCCGCCAACACTTAACACCAAT-CTTAAAACTCCTT--AACACTATCAAGTAAAACCTAA
102556289 ATACTCAT
63 ATA-TCAT
102556297 TGATACTCTA
Statistics
Matches: 130, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
77 1 0.01
78 63 0.48
79 1 0.01
80 60 0.46
81 5 0.04
ACGTcount: A:0.39, C:0.30, G:0.05, T:0.26
Consensus pattern (78 bp):
CCTCTGCCGCCAACACTTAACACCAATCTTAAAACTCCTTAACACTATCAAGTAAAACCTAAATA
TCATGACAACCTC
Found at i:102556389 original size:113 final size:112
Alignment explanation
Indices: 102556191--102556408 Score: 337
Period size: 113 Copynumber: 1.9 Consensus size: 112
102556181 CTCCTTAACA
* * * *
102556191 CTATCAAGTAAAACCTAAATATCATACATACCTCCCTCTGCCACCAACACTTAACACCAATACTA
1 CTATCAAGTAAAACCTAAAGATCATACACACCTCCCTCCGCCACCAACACTTAAAACCAATACTA
102556256 AAACTCCTTAAAACTCTATCAAGTAAAACCTAAATACTCATTGATACT
66 AAACTCCTTAAAACTCTATCAAGTAAAACCTAAATA-TCATTGATACT
* * *
102556304 CTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCCAACACTTAAAACCAATCCTA
1 CTATCAAGTAAAACCTAAAGATCATACACACCTCCCTCCGCCACCAACACTTAAAACCAATACTA
* * *
102556369 AAACTCCTTAATACTTTATCAAGTGAAACCTAAATATCAT
66 AAACTCCTTAAAACTCTATCAAGTAAAACCTAAATATCAT
102556409 GTGAACCTCC
Statistics
Matches: 95, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
112 4 0.04
113 91 0.96
ACGTcount: A:0.40, C:0.30, G:0.05, T:0.25
Consensus pattern (112 bp):
CTATCAAGTAAAACCTAAAGATCATACACACCTCCCTCCGCCACCAACACTTAAAACCAATACTA
AAACTCCTTAAAACTCTATCAAGTAAAACCTAAATATCATTGATACT
Found at i:102556418 original size:80 final size:80
Alignment explanation
Indices: 102556284--102556490 Score: 263
Period size: 80 Copynumber: 2.6 Consensus size: 80
102556274 TCAAGTAAAA
* * *
102556284 CCTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCC
1 CCTAAA-ACTCCTTAATACTCTATCAAGTAAAACCTAAATATCATTCACACCTCCCTCCGCCGCC
102556349 AACACTTAAAACCAAT
65 AACACTTAAAACCAAT
* * * * *
102556365 CCTAAAACTCCTTAATACTTTATCAAGTGAAACCTAAATATCATGTGA-ACCTCCCTCTGTCGCC
1 CCTAAAACTCCTTAATACTCTATCAAGTAAAACCTAAATATCAT-TCACACCTCCCTCCGCCGCC
* *
102556429 ATCACTTAACACCAAT
65 AACACTTAAAACCAAT
* * *
102556445 CTTAAAACTCCTTAACACTCTATCAATTAAAACCTAAATACTCATT
1 CCTAAAACTCCTTAATACTCTATCAAGTAAAACCTAAATA-TCATT
102556491 GATACTCTAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
80 97 0.89
81 12 0.11
ACGTcount: A:0.37, C:0.30, G:0.05, T:0.28
Consensus pattern (80 bp):
CCTAAAACTCCTTAATACTCTATCAAGTAAAACCTAAATATCATTCACACCTCCCTCCGCCGCCA
ACACTTAAAACCAAT
Found at i:102556457 original size:193 final size:192
Alignment explanation
Indices: 102556095--102556596 Score: 719
Period size: 193 Copynumber: 2.6 Consensus size: 192
102556085 AAAACCAGTT
* * * * * * **
102556095 CTAAA-ACTCATTAATACTTTATCAAGTGAAACCTAAATATCATGTGA-ACCTCCTTTTGCCGCC
1 CTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCAT-TCACACCTCCCTCCGCCGCC
*
102556158 AACACTTAACACCAATCTTAAAACTCCTTAACAC-TATCAAGTAAAACCTAAATATCATACATAC
65 AACACTTAACACCAATCCTAAAACTCCTTAACACTTATCAAGTAAAACCTAAATATCATACATAC
102556222 CTCCCTCTGCCACCAACACTTAACACCAATACTAAAACTCCTTAAAACTCTATCAAGTAAAAC
130 CTCCCTCTGCCACCAACACTTAACACCAATACTAAAACTCCTTAAAACTCTATCAAGTAAAAC
102556285 CTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCCA
1 CTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCCA
* * * **
102556350 ACACTTAAAACCAATCCTAAAACTCCTTAATACTTTATCAAGTGAAACCTAAATATCATGTGA-A
66 ACACTTAACACCAATCCTAAAACTCCTTAACAC-TTATCAAGTAAAACCTAAATATCAT-ACATA
* * * * *
102556414 CCTCCCTCTGTCGCCATCACTTAACACCAAT-CTTAAAACTCCTTAACACTCTATCAATTAAAAC
129 CCTCCCTCTGCCACCAACACTTAACACCAATAC-TAAAACTCCTTAAAACTCTATCAAGTAAAAC
*
102556478 CTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCTCTCCGCCGCCA
1 CTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCCA
* *
102556543 ACACTTATCACCAATACTAAAACT-CTTAACACTCTATCAAGTAAAACCTAAATA
66 ACACTTAACACCAATCCTAAAACTCCTTAACACT-TATCAAGTAAAACCTAAATA
102556597 CTCCTTGATA
Statistics
Matches: 280, Mismatches: 25, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
190 7 0.03
191 79 0.28
192 27 0.10
193 166 0.59
194 1 0.00
ACGTcount: A:0.39, C:0.30, G:0.05, T:0.26
Consensus pattern (192 bp):
CTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCCA
ACACTTAACACCAATCCTAAAACTCCTTAACACTTATCAAGTAAAACCTAAATATCATACATACC
TCCCTCTGCCACCAACACTTAACACCAATACTAAAACTCCTTAAAACTCTATCAAGTAAAAC
Found at i:102556502 original size:113 final size:114
Alignment explanation
Indices: 102556365--102556684 Score: 436
Period size: 112 Copynumber: 2.9 Consensus size: 114
102556355 TAAAACCAAT
* * * * *
102556365 CCTAAA-ACTCCTTAATACTTTATCAAGTGAAACCTAAATATCATGTGA-ACCTCCCTCTGTCGC
1 CCTAAATACTCCTTGATACTCTATCAAGTAAAACCTAAAGATCAT-TCACACCTCCCTCTGTCGC
* *
102556428 CATCACTTAACACCAAT-CTTAAAACTCCTTAACACTCTATCAATTAAAA
65 CAACACTTAACACCAATACTTAAAACTCCTTAACACTCTATCAAGTAAAA
* * * *
102556477 CCTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCTCTCCGCCGCC
1 CCTAAATACTCCTTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCTGTCGCC
*
102556542 AACACTTATCACCAATAC-TAAAACT-CTTAACACTCTATCAAGTAAAA
66 AACACTTAACACCAATACTTAAAACTCCTTAACACTCTATCAAGTAAAA
* *
102556589 CCTAAATACTCCTTGATACTCTATCAAGTAAAACCTAAAGATCACTCACACCTCCCCCTGTCGCC
1 CCTAAATACTCCTTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCTGTCGCC
* * *
102556654 AACACTTAAAACCAATCCTT-AAATTCCTTAA
66 AACACTTAACACCAATACTTAAAACTCCTTAA
102556685 TAACAATAAG
Statistics
Matches: 181, Mismatches: 22, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
112 107 0.59
113 73 0.40
114 1 0.01
ACGTcount: A:0.37, C:0.31, G:0.05, T:0.27
Consensus pattern (114 bp):
CCTAAATACTCCTTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCTGTCGCC
AACACTTAACACCAATACTTAAAACTCCTTAACACTCTATCAAGTAAAA
Found at i:102560993 original size:18 final size:19
Alignment explanation
Indices: 102560957--102560994 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
102560947 CCTCACGTAA
102560957 TTAAACTCTCCTAAGACTT
1 TTAAACTCTCCTAAGACTT
*
102560976 TTAAACTCT-CTTAGACTT
1 TTAAACTCTCCTAAGACTT
102560994 T
1 T
102560995 ACCTAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.42
Consensus pattern (19 bp):
TTAAACTCTCCTAAGACTT
Found at i:102562852 original size:21 final size:22
Alignment explanation
Indices: 102562823--102562866 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
102562813 TTTTTGCGTT
*
102562823 AAAAGAGATGGAGAAG-AGAAG
1 AAAAGAGATGAAGAAGCAGAAG
*
102562844 AAAATAGATGAAGAAGCAGAAG
1 AAAAGAGATGAAGAAGCAGAAG
102562866 A
1 A
102562867 GAATGAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.59, C:0.02, G:0.32, T:0.07
Consensus pattern (22 bp):
AAAAGAGATGAAGAAGCAGAAG
Found at i:102579604 original size:21 final size:21
Alignment explanation
Indices: 102579578--102579620 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
102579568 AAACCGCTGA
102579578 ACATAGAGAATAGATCTTCGT
1 ACATAGAGAATAGATCTTCGT
102579599 ACATAGAGAATAGATCTTCGT
1 ACATAGAGAATAGATCTTCGT
102579620 A
1 A
102579621 TTATTTGACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.28
Consensus pattern (21 bp):
ACATAGAGAATAGATCTTCGT
Found at i:102582223 original size:18 final size:20
Alignment explanation
Indices: 102582191--102582229 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
102582181 AATACTTTTA
102582191 AAAATATTTACTAAAAAAAT
1 AAAATATTTACTAAAAAAAT
*
102582211 AAAAT-TTTA-TAAAATAAT
1 AAAATATTTACTAAAAAAAT
102582229 A
1 A
102582230 TCCAAAACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 4 0.22
20 5 0.28
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAATATTTACTAAAAAAAT
Found at i:102587640 original size:13 final size:14
Alignment explanation
Indices: 102587622--102587655 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
102587612 AACATCCCTA
102587622 TAATTATTTT-TTT
1 TAATTATTTTATTT
102587635 TAATTATTTTATTT
1 TAATTATTTTATTT
102587649 TATATTA
1 TA-ATTA
102587656 AATTTGATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.53
14 5 0.26
15 4 0.21
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
TAATTATTTTATTT
Found at i:102593851 original size:18 final size:19
Alignment explanation
Indices: 102593823--102593862 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
102593813 AGGACACTCT
*
102593823 CTACTAAATCAAATAACTA
1 CTACTAAATCAAATAACAA
102593842 CTAC-AAATCAAATAACAA
1 CTACTAAATCAAATAACAA
102593860 CTA
1 CTA
102593863 TTTGACTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (19 bp):
CTACTAAATCAAATAACAA
Found at i:102600674 original size:29 final size:30
Alignment explanation
Indices: 102600618--102600690 Score: 75
Period size: 29 Copynumber: 2.5 Consensus size: 30
102600608 CTTGGCACGA
102600618 ATATATTATGTT--ATAAAAATATTATA-TT
1 ATAT-TTATGTTAAATAAAAATATTATATTT
*
102600646 A-ATTAATATGTTAAATAATAAT-TTATATTT
1 ATATT--TATGTTAAATAAAAATATTATATTT
102600676 ATATTTATGTTAAAT
1 ATATTTATGTTAAAT
102600691 CAAGAATCAA
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 7 0.18
29 15 0.39
30 10 0.26
31 3 0.08
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (30 bp):
ATATTTATGTTAAATAAAAATATTATATTT
Found at i:102603542 original size:23 final size:23
Alignment explanation
Indices: 102603514--102603856 Score: 120
Period size: 23 Copynumber: 14.9 Consensus size: 23
102603504 ATCATTTCTA
*
102603514 ATATATATATATCGTATATGTTTTT
1 ATATATAT-TAT-GTATATATTTTT
102603539 ATATATATTATGTATATATTTTT
1 ATATATATTATGTATATATTTTT
102603562 A-ATATTATTA-GTTATATATCTTTT
1 ATATA-TATTATG-TATATAT-TTTT
102603586 ATACTAT-TTCATGTATATATTTTT
1 ATA-TATATT-ATGTATATATTTTT
* ** *
102603610 ATGT-TATCCT-TAT-TA-TTAT
1 ATATATATTATGTATATATTTTT
*
102603629 -TA-ATATTA-GTATAT-GTTTT
1 ATATATATTATGTATATATTTTT
* *
102603648 AT-TATA-T-G-TATATATCTTT
1 ATATATATTATGTATATATTTTT
*
102603667 A-ATATATATATGTATATATTTAT
1 ATATATAT-TATGTATATATTTTT
*
102603690 GTA-ATATTAT-TA-ATAGTTGTTT
1 ATATATATTATGTATATA-TT-TTT
* *
102603712 -TTTAACATTAT-TAT-TATTTCTAAT
1 ATAT-ATATTATGTATATATTT-T--T
* * **
102603736 ATGTATATACTATGTAAATATTTCA
1 A--TATATATTATGTATATATTTTT
*
102603761 ATACTATATTATGTATGTATTTTT
1 ATA-TATATTATGTATATATTTTT
* * * *
102603785 AACATTATATTACGTACATACTTTTA
1 -ATA-TATATTATGTATATA-TTTTT
102603811 ATATCATTATTATGTATATATTTTT
1 ATAT-A-TATTATGTATATATTTTT
*
102603836 A-ATATATATATGTGTATATTT
1 ATATATAT-TATGTATATATTT
102603857 ATGTAGTATT
Statistics
Matches: 237, Mismatches: 40, Indels: 84
0.66 0.11 0.23
Matches are distributed among these distances:
18 12 0.05
19 16 0.07
20 9 0.04
21 10 0.04
22 17 0.07
23 64 0.27
24 36 0.15
25 41 0.17
26 23 0.10
27 4 0.02
28 5 0.02
ACGTcount: A:0.34, C:0.05, G:0.06, T:0.55
Consensus pattern (23 bp):
ATATATATTATGTATATATTTTT
Found at i:102603834 original size:25 final size:25
Alignment explanation
Indices: 102603766--102603856 Score: 96
Period size: 25 Copynumber: 3.7 Consensus size: 25
102603756 TTTCAATACT
* * *
102603766 ATATTATGTATGTATTTTTAACATT
1 ATATTATGTATATATTTTTAATATC
* * *
102603791 ATATTACGTACATACTTTTAATATC
1 ATATTATGTATATATTTTTAATATC
102603816 ATTATTATGTATATATTTTTAATAT-
1 A-TATTATGTATATATTTTTAATATC
*
102603841 ATA-TATGTGTATATTT
1 ATATTATGTATATATTT
102603857 ATGTAGTATT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
23 12 0.22
24 2 0.04
25 21 0.38
26 20 0.36
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54
Consensus pattern (25 bp):
ATATTATGTATATATTTTTAATATC
Found at i:102603933 original size:11 final size:11
Alignment explanation
Indices: 102603919--102603943 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
102603909 TATATTATAT
102603919 ATATATTTTCA
1 ATATATTTTCA
102603930 ATATATTTTCA
1 ATATATTTTCA
102603941 ATA
1 ATA
102603944 CTATGTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (11 bp):
ATATATTTTCA
Found at i:102603964 original size:21 final size:20
Alignment explanation
Indices: 102603930--102603968 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
102603920 TATATTTTCA
102603930 ATATATTTTCAATACTATGT
1 ATATATTTTCAATACTATGT
*
102603950 ATATACTTTTTAATACTAT
1 ATATA-TTTTCAATACTAT
102603969 ATTATGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.36, C:0.10, G:0.03, T:0.51
Consensus pattern (20 bp):
ATATATTTTCAATACTATGT
Found at i:102603975 original size:26 final size:23
Alignment explanation
Indices: 102603903--102603993 Score: 64
Period size: 22 Copynumber: 4.0 Consensus size: 23
102603893 TTATTTCTAA
*
102603903 TATGTATATATTAT-ATATATAT
1 TATGTATATATTTTAATATATAT
* ** * *
102603925 TTTCAATATATTTT--CA-ATAC
1 TATGTATATATTTTAATATATAT
102603945 TATGTATATACTTTTTAATACTATAT
1 TATGTATATA--TTTTAATA-TATAT
*
102603971 TATGTTTATATTTTAATATATAT
1 TATGTATATATTTTAATATATAT
102603994 ACGTATGTAT
Statistics
Matches: 51, Mismatches: 12, Indels: 11
0.69 0.16 0.15
Matches are distributed among these distances:
20 10 0.20
21 1 0.02
22 14 0.27
23 5 0.10
24 9 0.18
26 12 0.24
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.55
Consensus pattern (23 bp):
TATGTATATATTTTAATATATAT
Found at i:102607567 original size:21 final size:21
Alignment explanation
Indices: 102607527--102607567 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
102607517 AGGGTAATAG
* *
102607527 GGTGGAGGAGGGTAAGCGCCT
1 GGTGGACGAGGGTAACCGCCT
*
102607548 GGTGGACGAGGGTATCCGCC
1 GGTGGACGAGGGTAACCGCC
102607568 ATATGGGTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.20, G:0.49, T:0.15
Consensus pattern (21 bp):
GGTGGACGAGGGTAACCGCCT
Found at i:102609169 original size:45 final size:45
Alignment explanation
Indices: 102609119--102609206 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
102609109 CTATTTTTGT
* *
102609119 TGTTAAAAACTGATAATTGTACGTCAACATGAAATAAATCTGATA
1 TGTTAAAAACTGATAATTATACATCAACATGAAATAAATCTGATA
* *
102609164 TGTTAAAAACTGATAATTATACATCAACATGAATTACATCTGA
1 TGTTAAAAACTGATAATTATACATCAACATGAAATAAATCTGA
102609207 CATGCTACAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.32
Consensus pattern (45 bp):
TGTTAAAAACTGATAATTATACATCAACATGAAATAAATCTGATA
Found at i:102615792 original size:16 final size:17
Alignment explanation
Indices: 102615766--102615801 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
102615756 GCGGTGTGAA
102615766 TAAAGATATAAACATAC
1 TAAAGATATAAACATAC
102615783 TAAA-ATATAAACATAC
1 TAAAGATATAAACATAC
102615799 TAA
1 TAA
102615802 TAATTCAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.61, C:0.11, G:0.03, T:0.25
Consensus pattern (17 bp):
TAAAGATATAAACATAC
Found at i:102621065 original size:21 final size:21
Alignment explanation
Indices: 102621038--102621086 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
102621028 ACCTTTGCTA
102621038 TTTTTGTTGCTATTTTTCCA-
1 TTTTTGTTGCTATTTTTCCAC
* *
102621058 TGTTTTGTTGTTGTTTTTCCAC
1 T-TTTTGTTGCTATTTTTCCAC
102621080 TTTTTGT
1 TTTTTGT
102621087 CATTGTTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 23 0.92
22 1 0.04
ACGTcount: A:0.06, C:0.12, G:0.14, T:0.67
Consensus pattern (21 bp):
TTTTTGTTGCTATTTTTCCAC
Found at i:102621092 original size:21 final size:21
Alignment explanation
Indices: 102621050--102621095 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
102621040 TTTGTTGCTA
**
102621050 TTTTTCCATGTTTTGTTGTTG
1 TTTTTCCATGTTTTGTCATTG
102621071 TTTTTCCACT-TTTTGTCATTG
1 TTTTTCCA-TGTTTTGTCATTG
102621092 TTTT
1 TTTT
102621096 GTTACCATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.07, C:0.13, G:0.13, T:0.67
Consensus pattern (21 bp):
TTTTTCCATGTTTTGTCATTG
Found at i:102622069 original size:12 final size:12
Alignment explanation
Indices: 102622052--102622077 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
102622042 ATTGATTGAA
102622052 TGGGATAAAGGT
1 TGGGATAAAGGT
102622064 TGGGATAAAGGT
1 TGGGATAAAGGT
102622076 TG
1 TG
102622078 CTTAAGTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.42, T:0.27
Consensus pattern (12 bp):
TGGGATAAAGGT
Found at i:102624678 original size:6 final size:6
Alignment explanation
Indices: 102624651--102624710 Score: 52
Period size: 6 Copynumber: 10.3 Consensus size: 6
102624641 GTACACTTCC
* * * *
102624651 CCACCC CCACC- CCACC- CCACCT CCACCT CCGCCT CCGCCT CCGCCT
1 CCACCT CCACCT CCACCT CCACCT CCACCT CCACCT CCACCT CCACCT
* *
102624697 CCGCCT CCGCCT CC
1 CCACCT CCACCT CC
102624711 TGTACCAAAA
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
5 10 0.19
6 42 0.81
ACGTcount: A:0.08, C:0.72, G:0.08, T:0.12
Consensus pattern (6 bp):
CCACCT
Found at i:102624691 original size:12 final size:12
Alignment explanation
Indices: 102624670--102624710 Score: 73
Period size: 12 Copynumber: 3.4 Consensus size: 12
102624660 CCCCACCCCA
*
102624670 CCTCCACCTCCG
1 CCTCCGCCTCCG
102624682 CCTCCGCCTCCG
1 CCTCCGCCTCCG
102624694 CCTCCGCCTCCG
1 CCTCCGCCTCCG
102624706 CCTCC
1 CCTCC
102624711 TGTACCAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.02, C:0.68, G:0.12, T:0.17
Consensus pattern (12 bp):
CCTCCGCCTCCG
Found at i:102624697 original size:18 final size:18
Alignment explanation
Indices: 102624670--102624710 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
102624660 CCCCACCCCA
102624670 CCTCCACCTCCGCCTCCG
1 CCTCCACCTCCGCCTCCG
*
102624688 CCTCCGCCTCCGCCTCCG
1 CCTCCACCTCCGCCTCCG
102624706 CCTCC
1 CCTCC
102624711 TGTACCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.02, C:0.68, G:0.12, T:0.17
Consensus pattern (18 bp):
CCTCCACCTCCGCCTCCG
Found at i:102624726 original size:81 final size:81
Alignment explanation
Indices: 102624619--102624779 Score: 218
Period size: 81 Copynumber: 2.0 Consensus size: 81
102624609 GCCTCCACCT
* *
102624619 CCTCCCCCTCCTGTACCAAAATGTACACTT-CCCCACCCCCACC-CCACCCCACCTCCACCTCCG
1 CCTCCCCCTCCTGTACCAAAATGTACACTTCCCCCACCCCCACCTCCA--CCACCTCCACCACCA
102624682 CCTCCGCCTCCGCCTCCG
64 CCTCCGCCTCCGCCTCCG
* * * * *
102624700 CCTCCGCCTCCTGTACCAAAATGTACATTTCCCCCACCTCCACCTCCACCTCCTCCGCCACCACC
1 CCTCCCCCTCCTGTACCAAAATGTACACTTCCCCCACCCCCACCTCCACCACCTCCACCACCACC
*
102624765 TCCTCCTCCGCCTCC
66 TCCGCCTCCGCCTCC
102624780 ATGTAAGTTC
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
81 55 0.79
82 12 0.17
83 3 0.04
ACGTcount: A:0.15, C:0.60, G:0.07, T:0.19
Consensus pattern (81 bp):
CCTCCCCCTCCTGTACCAAAATGTACACTTCCCCCACCCCCACCTCCACCACCTCCACCACCACC
TCCGCCTCCGCCTCCG
Found at i:102636289 original size:36 final size:36
Alignment explanation
Indices: 102636249--102636320 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
102636239 TTCTTTTTGC
102636249 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
1 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
* *
102636285 CGTTCCAAATTCCCACCCCCTTCCCGAATTTTTCCT
1 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
102636321 TTCTTCTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.17, C:0.47, G:0.04, T:0.32
Consensus pattern (36 bp):
CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
Found at i:102636762 original size:16 final size:16
Alignment explanation
Indices: 102636743--102636774 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
102636733 TACTAATCAA
*
102636743 AGTTTCTATGTTTCTG
1 AGTTTCCATGTTTCTG
102636759 AGTTTCCATGTTTCTG
1 AGTTTCCATGTTTCTG
102636775 CCTGTCTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.16, G:0.19, T:0.53
Consensus pattern (16 bp):
AGTTTCCATGTTTCTG
Found at i:102636922 original size:45 final size:45
Alignment explanation
Indices: 102636852--102636942 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
102636842 AATTAAATTA
** *
102636852 ACCATTATTAGCAGGTTTAGTTTCATTTAAGTCATGCATATATAT
1 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
102636897 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
1 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
102636942 A
1 A
102636943 TTAATGCATA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (45 bp):
ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
Done.