Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 33 of 325
Found at i:9760191 original size:27 final size:26
Alignment explanation
Indices: 9760146--9760200 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
9760136 CTCATAATAG
* *
9760146 TTACAATTTCATCAATTTTTACGACTT
1 TTACAATTTAATCAATTTTCAC-ACTT
**
9760173 TTACAATTTAATCTTTTTTCACACTT
1 TTACAATTTAATCAATTTTCACACTT
9760199 TT
1 TT
9760201 CTTTCACCCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.27, C:0.18, G:0.02, T:0.53
Consensus pattern (26 bp):
TTACAATTTAATCAATTTTCACACTT
Found at i:9763396 original size:53 final size:53
Alignment explanation
Indices: 9763315--9763465 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
9763305 CTTACACGGT
* *
9763315 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
9763370 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
9763423 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
9763466 GCACACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:9765136 original size:20 final size:21
Alignment explanation
Indices: 9765112--9765158 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
9765102 GAGCTCCGTC
9765112 CAGCTCAACTC-AGCTTA-TTT
1 CAGCTCAAC-CGAGCTTACTTT
*
9765132 GAGCTCAACCGAGCTTACTTT
1 CAGCTCAACCGAGCTTACTTT
9765153 CAGCTC
1 CAGCTC
9765159 GTTCTTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 1 0.04
20 14 0.61
21 8 0.35
ACGTcount: A:0.23, C:0.32, G:0.15, T:0.30
Consensus pattern (21 bp):
CAGCTCAACCGAGCTTACTTT
Found at i:9775074 original size:5 final size:5
Alignment explanation
Indices: 9775064--9775108 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
9775054 AATTTTTTTA
* * *
9775064 AAAAT AAAAT AAAAT AAAAAT AAAAG AAAAT TAAAT AAAGT AAAA
1 AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
9775109 AGTTATTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
5 28 0.85
6 5 0.15
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:9775081 original size:16 final size:16
Alignment explanation
Indices: 9775062--9775108 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
9775052 ATAATTTTTT
9775062 TAAAAATAAAATAAAA
1 TAAAAATAAAATAAAA
*
9775078 TAAAAATAAAAGAAAA
1 TAAAAATAAAATAAAA
* *
9775094 T-TAAATAAAGTAAAA
1 TAAAAATAAAATAAAA
9775109 AGTTATTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
15 11 0.41
16 16 0.59
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (16 bp):
TAAAAATAAAATAAAA
Found at i:9778440 original size:40 final size:39
Alignment explanation
Indices: 9778276--9778461 Score: 158
Period size: 41 Copynumber: 4.6 Consensus size: 39
9778266 GACAAATCAA
* * * *
9778276 CTATATGTGGCACTTAGTGTGCGATTCAACATAG-TTTCGG
1 CTATATATGGCACTTAGTGTGCAATT-GAGATAGCTTT-GG
* * * *
9778316 CTATATATGGCATTTCGTGTGCGAGATTGAGATAACTTTGT
1 CTATATATGGCACTTAGTGTGC-A-ATTGAGATAGCTTTGG
* * *
9778357 CTATATATGGCACTTTGTATGCGAGATTGAGATAGCTTCGG
1 CTATATATGGCACTTAGTGTGC-A-ATTGAGATAGCTTTGG
*
9778398 CTATATATGGCACTTAGTGTGCAATTTGAGATGGCTTTGG
1 CTATATATGGCACTTAGTGTGCAA-TTGAGATAGCTTTGG
* * * *
9778438 CTATGTACGACACTTAATGTGCAA
1 CTATATATGGCACTTAGTGTGCAA
9778462 GATATCGAGT
Statistics
Matches: 120, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 1 0.01
40 53 0.44
41 60 0.50
42 6 0.05
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (39 bp):
CTATATATGGCACTTAGTGTGCAATTGAGATAGCTTTGG
Found at i:9782755 original size:22 final size:22
Alignment explanation
Indices: 9782727--9782787 Score: 86
Period size: 22 Copynumber: 2.8 Consensus size: 22
9782717 ATTAAATAGG
* *
9782727 GAGCACTAAAGTGTTATACAGA
1 GAGCACTAAAGTGCTAAACAGA
*
9782749 GAGCACTAATGTGCTAAACAGA
1 GAGCACTAAAGTGCTAAACAGA
*
9782771 GAGCACTAACGTGCTAA
1 GAGCACTAAAGTGCTAA
9782788 TAATCAGAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (22 bp):
GAGCACTAAAGTGCTAAACAGA
Found at i:9784926 original size:64 final size:64
Alignment explanation
Indices: 9784858--9785063 Score: 179
Period size: 64 Copynumber: 3.2 Consensus size: 64
9784848 GATTGTTCAT
*
9784858 GATATTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGTGAACCTTAATGATATCAGCTGC
1 GATATTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGTGAACCTAAATGATATCAGCTGC
* * * * * *
9784922 GATATTAAATCAGCAA-GCTATTTGGAGTTGCGATATTAAATCAAGT-AA-CTCAAATAAGAT-T
1 GATATTAAATC-G-AATG-AACTTAG-GTTGCGATATTAAATC-AGTGAACCT-AAATGATATCA
*
9784983 G-TTC
60 GCTGC
** * *
9784987 ATGATATTAAATCGAATGAACTTAGGTTGCGATATTAAATCAACGAACCTCAATGATATCAACTG
1 --GATATTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGTGAACCTAAATGATATCAGCTG
*
9785052 T
64 C
*
9785053 AATATTAAATC
1 GATATTAAATC
9785064 AGCTAGCTAT
Statistics
Matches: 108, Mismatches: 21, Indels: 26
0.70 0.14 0.17
Matches are distributed among these distances:
63 1 0.01
64 45 0.42
65 12 0.11
66 12 0.11
67 35 0.32
68 3 0.03
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (64 bp):
GATATTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGTGAACCTAAATGATATCAGCTGC
Found at i:9784959 original size:67 final size:67
Alignment explanation
Indices: 9784881--9785095 Score: 176
Period size: 67 Copynumber: 3.3 Consensus size: 67
9784871 ATGAACTTAG
*
9784881 GTTGCGATATTAAATCAGTGAACCTTAATGATATCAGCTGCGATATTAAATCAGCAAGCTATTTG
1 GTTGCGATATTAAATCAGTGAACCTAAATGATATCAGCTGCGATATTAAATCAGCAAGCTATTTG
9784946 GA
66 GA
* * * * *
9784948 GTTGCGATATTAAATCAAGT-AA-CTCAAATAAGAT-TG-TTCATGATATTAAATC-G-AATG-A
1 GTTGCGATATTAAATC-AGTGAACCT-AAATGATATCAGCTGC--GATATTAAATCAGCAA-GCT
* *
9785006 ACTTAG-
61 ATTTGGA
** * * ** *
9785012 GTTGCGATATTAAATCAACGAACCTCAATGATATCAACTGTAATATTAAATCAGCTAGCTATTTG
1 GTTGCGATATTAAATCAGTGAACCTAAATGATATCAGCTGCGATATTAAATCAGCAAGCTATTTG
9785077 GA
66 GA
* *
9785079 GTTGTGATTTTAAATCA
1 GTTGCGATATTAAATCA
9785096 TTTAAGTCAA
Statistics
Matches: 111, Mismatches: 24, Indels: 26
0.69 0.15 0.16
Matches are distributed among these distances:
63 1 0.01
64 34 0.31
65 12 0.11
66 11 0.10
67 50 0.45
68 3 0.03
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (67 bp):
GTTGCGATATTAAATCAGTGAACCTAAATGATATCAGCTGCGATATTAAATCAGCAAGCTATTTG
GA
Found at i:9785125 original size:67 final size:65
Alignment explanation
Indices: 9784922--9785261 Score: 171
Period size: 67 Copynumber: 5.2 Consensus size: 65
9784912 TATCAGCTGC
* * * **
9784922 GATATTAAATCAGCAAGCTATTTGGAGTTGCGATATTAAATCAAGTAACTCAAATAAGATTGTTC
1 GATATTAAATCAACTAG-TATTTGGAGTTGTGATATTAAATCATTTAA-TCAAATAAGATTGTTC
9784987 AT
64 AT
* * * * *** *
9784989 GATATTAAATCGAA-T-GAACTTAG-GTTGCGATATTAAATCAACGAACCTC-AAT--GA-T-AT
1 GATATTAAATC-AACTAGTATTTGGAGTTGTGATATTAAATCATTTAA--TCAAATAAGATTGTT
9785046 CAACT
63 C-A-T
* *
9785051 GTAATATTAAATCAGCTAGCTATTTGGAGTTGTGATTTTAAATCATTTAAGTCAAATAAGATTGT
1 G--ATATTAAATCAACTAG-TATTTGGAGTTGTGATATTAAATCATTTAA-TCAAATAAGATTGT
9785116 TCAT
62 TCAT
* * * * * ** * * * * *
9785120 GATATTAAATCAAAT-GAACTTAG-GTTGTGATCTTAAATCATAGAACCTTAACAATATCAGTT-
1 GATATTAAATCAACTAGTATTTGGAGTTGTGATATTAAATCATTTAATC-AAATAAGAT-TGTTC
*
9785182 GT
64 AT
* * ** *
9785184 GATATTAAATCAACGAGTTGTTTGGAGTTGCAATATTAAATCAATTAACTCAAATAAGATTGTTC
1 GATATTAAATCAACTAG-TATTTGGAGTTGTGATATTAAATCATTTAA-TCAAATAAGATTGTTC
9785249 AT
64 AT
9785251 GATATTAAATC
1 GATATTAAATC
9785262 GAATGAACTT
Statistics
Matches: 200, Mismatches: 51, Indels: 44
0.68 0.17 0.15
Matches are distributed among these distances:
60 2 0.01
61 2 0.01
62 4 0.02
63 2 0.01
64 73 0.37
65 16 0.08
66 14 0.07
67 77 0.38
68 2 0.01
69 4 0.02
70 2 0.01
71 2 0.01
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.35
Consensus pattern (65 bp):
GATATTAAATCAACTAGTATTTGGAGTTGTGATATTAAATCATTTAATCAAATAAGATTGTTCAT
Found at i:9785298 original size:131 final size:131
Alignment explanation
Indices: 9784705--9785328 Score: 764
Period size: 131 Copynumber: 4.8 Consensus size: 131
9784695 GAAAATTAGC
* * * * *
9784705 TAACACAAATGAA-ATTGTTCATGATATTAAATCGAATGAACTTAGATTACGAAATTAAATCAAC
1 TAACTCAAAT-AAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGC
* * * * * * * * *
9784769 GAACCTTAACGATATCAATTGCGATTTTTAATCAGCGAGTTGTTTGGAGATGCGATCTTAAATTA
65 GAACCTTAACGATATCAGTTGTGATATTAAATCAGCGAGCTATTTGGAGTTGCGATATTAAATCA
**
9784834 GC
130 AT
* * *
9784836 TAAATCAAATATGATTGTTCATGATATTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGTG
1 TAACTCAAATAAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGCG
* * * *
9784901 AACCTTAATGATATCAGCTGCGATATTAAATCAGCAAGCTATTTGGAGTTGCGATATTAAATCAA
66 AACCTTAACGATATCAGTTGTGATATTAAATCAGCGAGCTATTTGGAGTTGCGATATTAAATCAA
*
9784966 G
131 T
*
9784967 TAACTCAAATAAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTGCGATATTAAATCAACG
1 TAACTCAAATAAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGCG
* * ** * * * * *
9785032 AACCTCAATGATATCAACTGTAATATTAAATCAGCTAGCTATTTGGAGTTGTGATTTTAAATCAT
66 AACCTTAACGATATCAGTTGTGATATTAAATCAGCGAGCTATTTGGAGTTGCGATATTAAATCAA
9785097 T
131 T
* * * * **
9785098 TAAGTCAAATAAGATTGTTCATGATATTAAATCAAATGAACTTAGGTTGTGATCTTAAATCATAG
1 TAACTCAAATAAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGCG
* * * * *
9785163 AACCTTAACAATATCAGTTGTGATATTAAATCAACGAGTTGTTTGGAGTTGCAATATTAAATCAA
66 AACCTTAACGATATCAGTTGTGATATTAAATCAGCGAGCTATTTGGAGTTGCGATATTAAATCAA
9785228 T
131 T
* *
9785229 TAACTCAAATAAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTGCGATATTAAATTAGCA
1 TAACTCAAATAAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGCG
** * * *
9785294 AACCTTAAATATTTCAGTTATGATCTTAAATCAGC
66 AACCTTAACGATATCAGTTGTGATATTAAATCAGC
9785329 TGACTCAAAT
Statistics
Matches: 424, Mismatches: 68, Indels: 2
0.86 0.14 0.00
Matches are distributed among these distances:
130 1 0.00
131 423 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.34
Consensus pattern (131 bp):
TAACTCAAATAAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTGCGATATTAAATCAGCG
AACCTTAACGATATCAGTTGTGATATTAAATCAGCGAGCTATTTGGAGTTGCGATATTAAATCAA
T
Found at i:9789622 original size:4 final size:4
Alignment explanation
Indices: 9789613--9789639 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
9789603 AAATTATATA
9789613 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
9789640 GATTTGCGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:9796076 original size:19 final size:20
Alignment explanation
Indices: 9796033--9796083 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
9796023 GAAAAAAATT
9796033 ATAAAAATAATAAATTTTAG
1 ATAAAAATAATAAATTTTAG
* *
9796053 A-AAAATTATTAAATTTTA-
1 ATAAAAATAATAAATTTTAG
9796071 ATAAAAAT-ATAAA
1 ATAAAAATAATAAA
9796084 AAATTAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 5 0.19
19 20 0.77
20 1 0.04
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (20 bp):
ATAAAAATAATAAATTTTAG
Found at i:9796089 original size:26 final size:25
Alignment explanation
Indices: 9796060--9796108 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
9796050 TAGAAAAATT
*
9796060 ATTAAATTTTAATAAAAATATAAAAA
1 ATTAAAATTTAATAAAAAT-TAAAAA
*
9796086 ATTAAAATTTATTAAAAATTAAA
1 ATTAAAATTTAATAAAAATTAAA
9796109 TTTTTTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (25 bp):
ATTAAAATTTAATAAAAATTAAAAA
Found at i:9796404 original size:46 final size:49
Alignment explanation
Indices: 9796323--9796430 Score: 143
Period size: 47 Copynumber: 2.3 Consensus size: 49
9796313 TGTAAAAAAT
* *
9796323 TTTATGAAATTTT-TATTTCTTTACATTTTGTATAATTTTCTTACGA-C
1 TTTATAAAATTTTATATTTCTATACATTTTGTATAATTTTCTTACGATC
* * *
9796370 TTTATAAAATTTTATATTTCTATATA-TTT-TATAATTTTTTTACGATT
1 TTTATAAAATTTTATATTTCTATACATTTTGTATAATTTTCTTACGATC
9796417 TTTATAAAATTTTA
1 TTTATAAAATTTTA
9796431 CAATTTTTTA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
46 15 0.28
47 29 0.54
48 10 0.19
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (49 bp):
TTTATAAAATTTTATATTTCTATACATTTTGTATAATTTTCTTACGATC
Found at i:9796421 original size:20 final size:20
Alignment explanation
Indices: 9796396--9796471 Score: 75
Period size: 20 Copynumber: 3.8 Consensus size: 20
9796386 TTTCTATATA
*
9796396 TTTTATAATTTTTTTACGAT
1 TTTTATAATTTTTTTACAAT
**
9796416 TTTTATAA-AATTTTACAAT
1 TTTTATAATTTTTTTACAAT
* *
9796435 TTTT-TATATTGTTTCACAAT
1 TTTTATA-ATTTTTTTACAAT
9796455 TTTTAATAATTTTTTTA
1 TTTT-ATAATTTTTTTA
9796472 TTAAAATTTA
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
18 2 0.05
19 13 0.30
20 20 0.45
21 7 0.16
22 2 0.05
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (20 bp):
TTTTATAATTTTTTTACAAT
Found at i:9796443 original size:47 final size:46
Alignment explanation
Indices: 9796353--9796444 Score: 123
Period size: 47 Copynumber: 2.0 Consensus size: 46
9796343 TTACATTTTG
*
9796353 TATAATTTTCTTACGACTTTATAAAATTTTATATTTCTATATATTT
1 TATAATTTTCTTACGACTTTATAAAATTTTAAATTTCTATATATTT
* * *
9796399 TATAATTTTTTTACGATTTTTATAAAATTTTACAATTT-TTTATATT
1 TATAATTTTCTTACGA-CTTTATAAAATTTTA-AATTTCTATATATT
9796445 GTTTCACAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
46 15 0.38
47 21 0.52
48 4 0.10
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.59
Consensus pattern (46 bp):
TATAATTTTCTTACGACTTTATAAAATTTTAAATTTCTATATATTT
Found at i:9796687 original size:87 final size:85
Alignment explanation
Indices: 9796567--9796752 Score: 237
Period size: 85 Copynumber: 2.2 Consensus size: 85
9796557 AAAAAAAAAA
* * ** ** *
9796567 TTGAGGGTCTTTTTGATACATTTTGAAAGTTCAAGTACTCAATTGCGTACAAAAAAATTAGGGGC
1 TTGAGGGTC-TTTTGATACATTTTGAAACTTCAAGTACTCAAATGAATA-AAAAAAAGCA-AGGC
* *
9796632 TTAATTGCTTTTTTTGAAAAGGT
63 TTAATTGCATTTTTTGAAAAAGT
**
9796655 TTGAGGGTCTTTTGATGTATTTTGAAACTTCAAGTACTCAAATGAATAAAAAAAAGCAAGGCTTA
1 TTGAGGGTCTTTTGATACATTTTGAAACTTCAAGTACTCAAATGAATAAAAAAAAGCAAGGCTTA
9796720 ATTGCATTTTTTGAAAAAGT
66 ATTGCATTTTTTGAAAAAGT
*
9796740 TTGAGGGTTTTTT
1 TTGAGGGTCTTTT
9796753 TTGCATTCTT
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
85 36 0.42
86 8 0.09
87 33 0.38
88 9 0.10
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (85 bp):
TTGAGGGTCTTTTGATACATTTTGAAACTTCAAGTACTCAAATGAATAAAAAAAAGCAAGGCTTA
ATTGCATTTTTTGAAAAAGT
Found at i:9796755 original size:87 final size:88
Alignment explanation
Indices: 9796567--9796753 Score: 236
Period size: 87 Copynumber: 2.2 Consensus size: 88
9796557 AAAAAAAAAA
* * * ** ** *
9796567 TTGAGGGTCTTTTTGATACATTTTGAAAGTTCAAGTACTCAATTGCGTACAAAAAAATTAGGGGC
1 TTGAGGGTTTTTTTGATACATTTTGAAACTTCAAGTACTCAAATGAATACAAAAAAAGCAGAGGC
* *
9796632 TTAATTGCTTTTTTTGAAAAGGT
66 TTAATTGCATTTTTTGAAAAAGT
* **
9796655 TTGAGGG-TCTTTTGATGTATTTTGAAACTTCAAGTACTCAAATGAATA-AAAAAAAGCA-AGGC
1 TTGAGGGTTTTTTTGATACATTTTGAAACTTCAAGTACTCAAATGAATACAAAAAAAGCAGAGGC
9796717 TTAATTGCATTTTTTGAAAAAGT
66 TTAATTGCATTTTTTGAAAAAGT
9796740 TTGAGGGTTTTTTT
1 TTGAGGGTTTTTTT
9796754 TGCATTCTTA
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
85 31 0.37
86 13 0.15
87 33 0.39
88 7 0.08
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (88 bp):
TTGAGGGTTTTTTTGATACATTTTGAAACTTCAAGTACTCAAATGAATACAAAAAAAGCAGAGGC
TTAATTGCATTTTTTGAAAAAGT
Found at i:9804588 original size:13 final size:13
Alignment explanation
Indices: 9804570--9804595 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9804560 ATTATTTATC
9804570 ATTTAAATATATA
1 ATTTAAATATATA
9804583 ATTTAAATATATA
1 ATTTAAATATATA
9804596 TAAATTTAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTTAAATATATA
Found at i:9804603 original size:16 final size:15
Alignment explanation
Indices: 9804576--9804632 Score: 57
Period size: 16 Copynumber: 3.9 Consensus size: 15
9804566 TATCATTTAA
9804576 ATATATAATTTAAAT
1 ATATATAATTTAAAT
*
9804591 ATATATAAATTTAAGT
1 ATATAT-AATTTAAAT
9804607 ATAT-TAA--TAATAT
1 ATATATAATTTAA-AT
*
9804620 ATAAATAATTTAA
1 ATATATAATTTAA
9804633 CAATATAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
12 3 0.09
13 4 0.12
14 5 0.15
15 7 0.21
16 15 0.44
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (15 bp):
ATATATAATTTAAAT
Found at i:9808448 original size:21 final size:21
Alignment explanation
Indices: 9808424--9808465 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
9808414 ATTTGATCAA
* *
9808424 ACTCCACCTGTTTTGGAGTAT
1 ACTCCACCTGCTATGGAGTAT
9808445 ACTCCACCTGCTATGGAGTAT
1 ACTCCACCTGCTATGGAGTAT
9808466 CGCTCGTCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.33
Consensus pattern (21 bp):
ACTCCACCTGCTATGGAGTAT
Found at i:9816142 original size:17 final size:16
Alignment explanation
Indices: 9816111--9816144 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
9816101 GGTATATTTA
9816111 TTTTCTTTTAGTTTTT
1 TTTTCTTTTAGTTTTT
9816127 TTTTCTCTTTA-TTTTT
1 TTTTCT-TTTAGTTTTT
9816143 TT
1 TT
9816145 CCTTTCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.06, C:0.09, G:0.03, T:0.82
Consensus pattern (16 bp):
TTTTCTTTTAGTTTTT
Found at i:9816843 original size:3 final size:3
Alignment explanation
Indices: 9816782--9816834 Score: 63
Period size: 3 Copynumber: 17.7 Consensus size: 3
9816772 TTTGTTAACT
* *
9816782 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TCT- TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
*
9816827 TTA GTA TT
1 TTA TTA TT
9816835 GGTATTATTG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
2 1 0.02
3 41 0.98
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:9816915 original size:22 final size:23
Alignment explanation
Indices: 9816868--9816916 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
9816858 ATCTCTATTC
*
9816868 ATATATACTTATGTATTTTCAAAT
1 ATATATACTTATGTATTATC-AAT
9816892 ATATATATCTTAT-TATTATC-AT
1 ATATATA-CTTATGTATTATCAAT
9816914 ATA
1 ATA
9816917 AGTGCTTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 5 0.22
24 13 0.57
25 5 0.22
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.51
Consensus pattern (23 bp):
ATATATACTTATGTATTATCAAT
Found at i:9817042 original size:36 final size:36
Alignment explanation
Indices: 9816963--9817042 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
9816953 AATTTGTTTA
* *
9816963 ATATATATACGTATACTCATATTTCTTTTTATATAT
1 ATATATATACATATACTCATATTTATTTTTATATAT
* *
9816999 ATCTATATACATATACAT-ATTTTTATTTTTATA-AGT
1 ATATATATACATATAC-TCATATTTATTTTTATATA-T
9817035 ATATATAT
1 ATATATAT
9817043 TTATATGTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
35 1 0.03
36 35 0.95
37 1 0.03
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.53
Consensus pattern (36 bp):
ATATATATACATATACTCATATTTATTTTTATATAT
Found at i:9821929 original size:7 final size:8
Alignment explanation
Indices: 9821908--9821937 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
9821898 TCTCATGAAT
9821908 TCAAAAAA
1 TCAAAAAA
9821916 TCAAAAAA
1 TCAAAAAA
9821924 TCAAAAAAA
1 TC-AAAAAA
9821933 TCAAA
1 TCAAA
9821938 GTCAAAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.73, C:0.13, G:0.00, T:0.13
Consensus pattern (8 bp):
TCAAAAAA
Found at i:9824215 original size:44 final size:43
Alignment explanation
Indices: 9824163--9824881 Score: 324
Period size: 44 Copynumber: 16.7 Consensus size: 43
9824153 GAAGCCAGAG
*
9824163 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATAG-A
* * * * *
9824207 ATCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG---G-
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATAGA
* * * *
9824246 ATCTTATCTCTCTGA-AGTTACAGTAGAGAAGATC--ACATCAG-
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAT-AGA
* *
9824287 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATATA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATAGA
* * * *
9824330 ATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAA-ATAAAGG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAT--AGA
* * *
9824374 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATC---GCATCAG-
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAG-AT-AGA
* * * * *
9824415 GTCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-ATAG-A
* *
9824460 GATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCAAAGATAGAA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATAG-A
* ** * *
9824505 ATCCTATCTCCCTGA-AGTTACAGTGGAGTGGATTAAA-ATAAAGG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAT--AGA
* * ** *
9824549 ATCTTATCTCTCTGA-AGTTACAGTAGAATAGATC--ACATCAG-
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAT-AGA
* * * * * * * *
9824590 GTCTTATTTCCCTGAGGTTACAGCGGAGTAGACCGAAGAATTGAA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-ATAG-A
* * * *
9824635 GATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTAAAGATATA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATAGA
* * * *
9824679 ATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAA-ATAAAGG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAT--AGA
* * * *
9824723 ATCTCATCTCTCTGA-AGTTACAGTAGAGTAGATC---GCATCAG-
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAG-AT-AGA
* * * * * * *
9824764 GTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-ATAG-A
* * ** **
9824809 GATCTTATCCCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATAGA
* *
9824853 GGTCTTATCTCCCTGATATTACAGTGGAG
1 -ATCTTATCTCCCTGAGATTACAGTGGAG
9824882 TAGACTTAAA
Statistics
Matches: 515, Mismatches: 116, Indels: 88
0.72 0.16 0.12
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
39 24 0.05
41 109 0.21
42 15 0.03
43 78 0.15
44 182 0.35
45 9 0.02
46 96 0.19
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (43 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATAGA
Found at i:9824413 original size:128 final size:129
Alignment explanation
Indices: 9824161--9824533 Score: 467
Period size: 128 Copynumber: 2.9 Consensus size: 129
9824151 TTGAAGCCAG
*
9824161 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTG-AGAT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCCTGAAG-T
* *
9824225 TACAATGGAGCGGA-T----TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATC
65 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATC
9824285 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATA-TAATCCTATCTCCCTGAAGTT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCCTGAAGTT
*
9824349 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATC
* * * * * * * * *
9824413 AGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGCAGATCTTATCTCCCTGAGG
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-ATAGTA-ATCCTATCTCCCTGAAG
* * * * * *
9824478 TTACAGCGGAGCAGATCAAAGATAGAA--ATCCTATCTCCCTGAAGTTACAGTGGAGT
64 TTACAGTGGAGCGGATTAAA-ATA-AAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
9824534 GGATTAAAAT
Statistics
Matches: 219, Mismatches: 19, Indels: 15
0.87 0.08 0.06
Matches are distributed among these distances:
123 29 0.13
124 46 0.21
128 78 0.36
129 2 0.01
130 1 0.00
131 58 0.26
132 3 0.01
133 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (129 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCCTGAAGTT
ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATC
Found at i:9824843 original size:174 final size:174
Alignment explanation
Indices: 9824284--9824842 Score: 965
Period size: 174 Copynumber: 3.2 Consensus size: 174
9824274 AAGATCACAT
*
9824284 CAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATATAATCCTATCTCCCTGAAGTT
1 CAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCAAAGATATAATCCTATCTCCCTGAAGTT
9824349 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
* **
9824414 GGTCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTG
131 GGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTG
*
9824458 CAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCAAAGATAGAAATCCTATCTCCCTGAAGT
1 CAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCAAAGATA-TAATCCTATCTCCCTGAAGT
* * *
9824523 TACAGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAATAGATCACATC
65 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
* *
9824588 AGGTCTTATTTCCCTGAGGTTACAGCGGAGTAGACCGAAGAATTG
130 AGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTG
* *
9824633 AAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTAAAGATATAATCCTATCTCCCTGAAGTT
1 CAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCAAAGATATAATCCTATCTCCCTGAAGTT
*
9824698 ACAGTGGAGCGGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
*
9824763 GGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTG
131 GGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTG
* *
9824807 CAGATCTTATCCCCCTGAGGTTACAGTGGAGCAGAT
1 CAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGAT
9824843 TGAAGCCAGA
Statistics
Matches: 361, Mismatches: 23, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
174 198 0.55
175 163 0.45
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (174 bp):
CAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCAAAGATATAATCCTATCTCCCTGAAGTT
ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
GGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTG
Found at i:9825472 original size:14 final size:14
Alignment explanation
Indices: 9825447--9825489 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
9825437 ATTTTCGGTA
9825447 TATTTATTTTCT-TT
1 TATTT-TTTTCTCTT
9825461 TAGTTTTTTTCTCTT
1 TA-TTTTTTTCTCTT
9825476 TATTTTTTTC-CTT
1 TATTTTTTTCTCTT
9825489 T
1 T
9825490 CGAATTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 4 0.15
14 16 0.59
15 7 0.26
ACGTcount: A:0.09, C:0.12, G:0.02, T:0.77
Consensus pattern (14 bp):
TATTTTTTTCTCTT
Found at i:9826181 original size:3 final size:3
Alignment explanation
Indices: 9826120--9826172 Score: 63
Period size: 3 Copynumber: 17.7 Consensus size: 3
9826110 TTTGTTAACT
* *
9826120 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TCT- TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
*
9826165 TTA GTA TT
1 TTA TTA TT
9826173 GGTATTATTG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
2 1 0.02
3 41 0.98
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:9826253 original size:22 final size:23
Alignment explanation
Indices: 9826206--9826254 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
9826196 ATCTCTATTC
*
9826206 ATATATACTTATGTATTTTCAAAT
1 ATATATACTTATGTATTATC-AAT
9826230 ATATATATCTTAT-TATTATC-AT
1 ATATATA-CTTATGTATTATCAAT
9826252 ATA
1 ATA
9826255 AGTGCTTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 5 0.22
24 13 0.57
25 5 0.22
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.51
Consensus pattern (23 bp):
ATATATACTTATGTATTATCAAT
Found at i:9841577 original size:9 final size:9
Alignment explanation
Indices: 9841563--9841597 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
9841553 CCCAAATAGT
*
9841563 CTTCTTCGC
1 CTTCTTCTC
9841572 CTTCTTCTC
1 CTTCTTCTC
9841581 CTTCTTCTC
1 CTTCTTCTC
9841590 CTTCTTCT
1 CTTCTTCT
9841598 TTTATCTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.00, C:0.43, G:0.03, T:0.54
Consensus pattern (9 bp):
CTTCTTCTC
Found at i:9841578 original size:3 final size:3
Alignment explanation
Indices: 9841562--9841618 Score: 53
Period size: 3 Copynumber: 19.0 Consensus size: 3
9841552 ACCCAAATAG
* * * * *
9841562 TCT TCT TCG CCT TCT TCT CCT TCT TCT CCT TCT TCT TTT ATCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT -TCT TCT
9841608 T-T TCT TCT TCT
1 TCT TCT TCT TCT
9841619 AGAAGAAGAT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
2 2 0.05
3 38 0.90
4 2 0.05
ACGTcount: A:0.02, C:0.35, G:0.02, T:0.61
Consensus pattern (3 bp):
TCT
Found at i:9842360 original size:19 final size:18
Alignment explanation
Indices: 9842331--9842372 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
9842321 GTGTTGATCC
*
9842331 AATTGTAATTTTTGTTTT
1 AATTTTAATTTTTGTTTT
*
9842349 ATATTTTAATTTTTTTTTT
1 A-ATTTTAATTTTTGTTTT
9842368 AATTT
1 AATTT
9842373 CTTTGGCAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (18 bp):
AATTTTAATTTTTGTTTT
Found at i:9845547 original size:17 final size:19
Alignment explanation
Indices: 9845510--9845547 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
9845500 TAATACTTCA
9845510 AAAAATACATTGTTAATAT
1 AAAAATACATTGTTAATAT
*
9845529 AAAAATATATT-TT-ATAT
1 AAAAATACATTGTTAATAT
9845546 AA
1 AA
9845548 TATATTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 2 0.11
19 10 0.56
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (19 bp):
AAAAATACATTGTTAATAT
Found at i:9850209 original size:13 final size:13
Alignment explanation
Indices: 9850191--9850220 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
9850181 TTCTTGTAAA
9850191 CATTTCACATAAC
1 CATTTCACATAAC
*
9850204 CATTTCATATAAC
1 CATTTCACATAAC
9850217 CATT
1 CATT
9850221 CGTTATCTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (13 bp):
CATTTCACATAAC
Found at i:9850363 original size:46 final size:46
Alignment explanation
Indices: 9850304--9850533 Score: 318
Period size: 46 Copynumber: 5.0 Consensus size: 46
9850294 TTATCTTTGA
* * * *
9850304 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACTCA-TTTCATAT
*
9850350 CATGTTGCCATAGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* * *
9850396 CATGTTGCCATAGTATCTTTCAACCATGGTTTTATTCATTCCATAT
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* * *
9850442 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* * *
9850488 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCATAT
9850534 TAGAGAGCAC
Statistics
Matches: 169, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 165 0.98
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCATAT
Found at i:9851156 original size:55 final size:55
Alignment explanation
Indices: 9851087--9851205 Score: 213
Period size: 55 Copynumber: 2.2 Consensus size: 55
9851077 ATTTCATTTA
*
9851087 ATTTATTA-ATTTAGATAATAAAACAATTCATTCTCTTCAATTTGTTCATTTTGAC
1 ATTT-TTACATTTAGATAATAAAACAATTCATTCTCTTCAATTTGTTCATTTTAAC
9851142 ATTTTTACATTTAGATAATAAAACAATTCATTCTCTTCAATTTGTTCATTTTAAC
1 ATTTTTACATTTAGATAATAAAACAATTCATTCTCTTCAATTTGTTCATTTTAAC
9851197 ATTTTTACA
1 ATTTTTACA
9851206 AAATTGCCCC
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
54 3 0.05
55 59 0.95
ACGTcount: A:0.34, C:0.13, G:0.04, T:0.48
Consensus pattern (55 bp):
ATTTTTACATTTAGATAATAAAACAATTCATTCTCTTCAATTTGTTCATTTTAAC
Found at i:9852033 original size:10 final size:11
Alignment explanation
Indices: 9852007--9852039 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
9851997 TTCTACACTA
9852007 TTTCTCTTCAC
1 TTTCTCTTCAC
*
9852018 TTTCTCTT-AT
1 TTTCTCTTCAC
9852028 TTTCTCTTCAC
1 TTTCTCTTCAC
9852039 T
1 T
9852040 AACATGACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.09, C:0.30, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTCTCTTCAC
Found at i:9853771 original size:25 final size:25
Alignment explanation
Indices: 9853738--9853819 Score: 128
Period size: 25 Copynumber: 3.3 Consensus size: 25
9853728 CTATAAGCGA
* *
9853738 TAAGCTCCTCCAAGCTGAATAACGG
1 TAAGCTCCTTCGAGCTGAATAACGG
* *
9853763 TAAGTTCCTTCGAGCTAAATAACGG
1 TAAGCTCCTTCGAGCTGAATAACGG
9853788 TAAGCTCCTTCGAGCTGAATAACGG
1 TAAGCTCCTTCGAGCTGAATAACGG
9853813 TAAGCTC
1 TAAGCTC
9853820 ATAACTGAGT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 51 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (25 bp):
TAAGCTCCTTCGAGCTGAATAACGG
Found at i:9858281 original size:6 final size:6
Alignment explanation
Indices: 9858233--9858293 Score: 50
Period size: 6 Copynumber: 9.5 Consensus size: 6
9858223 AAAAAGTTTA
* * * *
9858233 AAAACAT AACAAT AAACAT AAAAAT AGAAAT AAAACTAA AAAAAT AAAAAT
1 AAAA-AT AAAAAT AAAAAT AAAAAT AAAAAT AAAA--AT AAAAAT AAAAAT
9858284 AAATAAT AAA
1 AAA-AAT AAA
9858294 TAGACTCAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
6 29 0.67
7 9 0.21
8 5 0.12
ACGTcount: A:0.75, C:0.07, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:9867908 original size:11 final size:11
Alignment explanation
Indices: 9867889--9867917 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
9867879 ACTCCTGTGA
9867889 AAAAT-AAAAT
1 AAAATAAAAAT
9867899 AAAATAAAAAT
1 AAAATAAAAAT
9867910 AAAATAAA
1 AAAATAAA
9867918 GAACACACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:9872296 original size:11 final size:11
Alignment explanation
Indices: 9872277--9872305 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
9872267 CAATTTGTGA
9872277 AAAAT-AAAAT
1 AAAATAAAAAT
9872287 AAAATAAAAAT
1 AAAATAAAAAT
9872298 AAAATAAA
1 AAAATAAA
9872306 GAACACACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:9875211 original size:11 final size:11
Alignment explanation
Indices: 9875195--9875223 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
9875185 ATATATATAC
9875195 TAATTACTCTA
1 TAATTACTCTA
9875206 TAATTACTCTA
1 TAATTACTCTA
9875217 TAATTAC
1 TAATTAC
9875224 AAGTCATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.00, T:0.45
Consensus pattern (11 bp):
TAATTACTCTA
Found at i:9886523 original size:18 final size:19
Alignment explanation
Indices: 9886492--9886527 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
9886482 ATGTCACAAA
9886492 AAAAAAACCAAAATTACAG
1 AAAAAAACCAAAATTACAG
*
9886511 AAAACAACC-AAATTACA
1 AAAAAAACCAAAATTACA
9886528 CAATGTGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.67, C:0.19, G:0.03, T:0.11
Consensus pattern (19 bp):
AAAAAAACCAAAATTACAG
Found at i:9890439 original size:45 final size:45
Alignment explanation
Indices: 9890371--9890503 Score: 151
Period size: 45 Copynumber: 3.0 Consensus size: 45
9890361 TAGGATTTTG
* * * *
9890371 ATATGTATTTTCGAGTAAGACCACGTCAGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAAACCACGTCAGGGACATTGGCATCGAT
*
9890416 ATATGTGTTTTCGTGTAAAACCACGTCTGGGACATTGGCATCGAT
1 ATATGTGTTTTCGTGTAAAACCACGTCAGGGACATTGGCATCGAT
* * * * * *
9890461 ATATGTGGTTACGTGTGAGACCATGTCTA-GAACATTGGCATCG
1 ATATGTGTTTTCGTGTAAAACCACGTC-AGGGACATTGGCATCG
9890504 TATTAGATTC
Statistics
Matches: 75, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
45 75 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAAACCACGTCAGGGACATTGGCATCGAT
Found at i:9903996 original size:55 final size:55
Alignment explanation
Indices: 9903928--9904061 Score: 200
Period size: 55 Copynumber: 2.4 Consensus size: 55
9903918 GCCCATATGT
*
9903928 CTTGGCCGTGGTCGACACTGACTTGGGTCACACGGCTAGCCACACGCCCGTGTGC
1 CTTGACCGTGGTCGACACTGACTTGGGTCACACGGCTAGCCACACGCCCGTGTGC
* * *
9903983 CTT-AGCTGTGGTCGGCATTGACTTGGGTCACACGGCTAGCCACACGCCCGTGTGC
1 CTTGA-CCGTGGTCGACACTGACTTGGGTCACACGGCTAGCCACACGCCCGTGTGC
9904038 CTTGACCGTGGTCGAGC-CTGACTT
1 CTTGACCGTGGTCGA-CACTGACTT
9904062 ACAAATGTAG
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
55 67 0.97
56 2 0.03
ACGTcount: A:0.14, C:0.32, G:0.31, T:0.23
Consensus pattern (55 bp):
CTTGACCGTGGTCGACACTGACTTGGGTCACACGGCTAGCCACACGCCCGTGTGC
Found at i:9905127 original size:40 final size:41
Alignment explanation
Indices: 9905079--9905169 Score: 114
Period size: 40 Copynumber: 2.3 Consensus size: 41
9905069 CTCAATATTG
**
9905079 CACACTTAGTGGC-ACATATAGCCGAAGCTATTCCAATTCA
1 CACACTTAGTGGCTACATATAGCCGAAGCTATTCCAAACCA
** * *
9905119 CACACTTAGT-GCTATTTATAGCCGAAGCTATTTCAAACCG
1 CACACTTAGTGGCTACATATAGCCGAAGCTATTCCAAACCA
9905159 CACACTTAGTG
1 CACACTTAGTG
9905170 CCGAACATAG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
39 2 0.05
40 41 0.95
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.27
Consensus pattern (41 bp):
CACACTTAGTGGCTACATATAGCCGAAGCTATTCCAAACCA
Found at i:9910941 original size:55 final size:55
Alignment explanation
Indices: 9910872--9911059 Score: 252
Period size: 55 Copynumber: 3.4 Consensus size: 55
9910862 CACAATACAT
* *
9910872 GCCCGTGTGTCTTGGCCGTGGTCGACACTGACTTGGGTCACACAACTAGCCACAC
1 GCCCGTGTGCCTTGGCCGTGGTCGACACTGACTTGGGTCACACAGCTAGCCACAC
* * * * *
9910927 GCCCGTGTGCCTTGGCCGTGGTCGGCAATGAATTGGGTCACATAGCTAGCCACAT
1 GCCCGTGTGCCTTGGCCGTGGTCGACACTGACTTGGGTCACACAGCTAGCCACAC
* * * *
9910982 GTCCGTGTGCCTTGGCCATGATCGAGC-CTAACTTGGGTCACACAGCTAGCCACAC
1 GCCCGTGTGCCTTGGCCGTGGTCGA-CACTGACTTGGGTCACACAGCTAGCCACAC
*
9911037 GCCCATGTGCCTTGGCCGTGGTC
1 GCCCGTGTGCCTTGGCCGTGGTC
9911060 AAGCCTGACT
Statistics
Matches: 112, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
55 111 0.99
56 1 0.01
ACGTcount: A:0.17, C:0.31, G:0.29, T:0.23
Consensus pattern (55 bp):
GCCCGTGTGCCTTGGCCGTGGTCGACACTGACTTGGGTCACACAGCTAGCCACAC
Found at i:9911938 original size:19 final size:19
Alignment explanation
Indices: 9911914--9911952 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
9911904 ACAAACTCGT
9911914 ACTTAACTATTACATTATC
1 ACTTAACTATTACATTATC
*
9911933 ACTTAACTATTATATTATC
1 ACTTAACTATTACATTATC
9911952 A
1 A
9911953 TTTCAATGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (19 bp):
ACTTAACTATTACATTATC
Found at i:9924282 original size:20 final size:21
Alignment explanation
Indices: 9924254--9924294 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
9924244 GAATACCATT
*
9924254 AATATTGATTGAATATTAATA
1 AATATTGATAGAATATTAATA
*
9924275 AATA-TGATAGTATATTAATA
1 AATATTGATAGAATATTAATA
9924295 TAAAATTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (21 bp):
AATATTGATAGAATATTAATA
Found at i:9926501 original size:17 final size:18
Alignment explanation
Indices: 9926451--9926501 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
9926441 ATTTTTTATA
*
9926451 ATAATATTTTTACAAATTT
1 ATAATCTTTTTA-AAATTT
*
9926470 ATAATCTTTTAAAAATATT
1 ATAATCTTTTTAAAAT-TT
9926489 -TAA-CTTTTTAAAA
1 ATAATCTTTTTAAAA
9926502 AATTAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 9 0.32
18 7 0.25
19 12 0.43
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (18 bp):
ATAATCTTTTTAAAATTT
Found at i:9932394 original size:3 final size:3
Alignment explanation
Indices: 9932386--9932413 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
9932376 AAATAGAATA
9932386 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
9932414 GAACGAACGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:9935159 original size:3 final size:3
Alignment explanation
Indices: 9935151--9935176 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
9935141 TGAAATTTGT
9935151 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
9935177 CACCTGTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:9945876 original size:14 final size:14
Alignment explanation
Indices: 9945857--9945885 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9945847 TACTCTTCTA
9945857 ATCAAATTCTAATT
1 ATCAAATTCTAATT
9945871 ATCAAATTCTAATT
1 ATCAAATTCTAATT
9945885 A
1 A
9945886 ATGATGGGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.41
Consensus pattern (14 bp):
ATCAAATTCTAATT
Found at i:9954042 original size:46 final size:44
Alignment explanation
Indices: 9953938--9954045 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
9953928 TGTCTTTGAC
** * * *
9953938 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
9953982 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
9954028 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
9954046 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:9956074 original size:11 final size:11
Alignment explanation
Indices: 9956037--9956075 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
9956027 AAAATGTAAG
9956037 AAAATAAATAA
1 AAAATAAATAA
9956048 AAAAGTAAA-AA
1 AAAA-TAAATAA
9956059 TAAAATAAATAA
1 -AAAATAAATAA
9956071 AAAAT
1 AAAAT
9956076 GATTATAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 15 0.60
12 10 0.40
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (11 bp):
AAAATAAATAA
Found at i:9957177 original size:9 final size:9
Alignment explanation
Indices: 9957153--9957182 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
9957143 AATGGACTTG
9957153 TTTTTATTT
1 TTTTTATTT
9957162 TTCTTTATTT
1 TT-TTTATTT
9957172 TTTTTATTT
1 TTTTTATTT
9957181 TT
1 TT
9957183 GGTCTTTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.10, C:0.03, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTTATTT
Found at i:9965434 original size:21 final size:23
Alignment explanation
Indices: 9965387--9965429 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
9965377 TTTATATTTT
9965387 AAATATTAAAATATAACTATTAC
1 AAATATTAAAATATAACTATTAC
9965410 AAAT-TTAAATATATAA-TATT
1 AAATATTAAA-ATATAACTATT
9965430 GAAATAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (23 bp):
AAATATTAAAATATAACTATTAC
Found at i:9973594 original size:20 final size:23
Alignment explanation
Indices: 9973546--9973595 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
9973536 TTTTCCTGCA
9973546 TCATATTTATTTTTTCATATTGAT
1 TCATATTTATTTTTTCATATT-AT
*
9973570 ACATATTT-TTTTTTCA-ATT-T
1 TCATATTTATTTTTTCATATTAT
9973590 TCATAT
1 TCATAT
9973596 CTAAAATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 6 0.25
22 3 0.12
23 8 0.33
24 7 0.29
ACGTcount: A:0.26, C:0.10, G:0.02, T:0.62
Consensus pattern (23 bp):
TCATATTTATTTTTTCATATTAT
Found at i:9975715 original size:75 final size:75
Alignment explanation
Indices: 9975630--9975782 Score: 202
Period size: 75 Copynumber: 2.0 Consensus size: 75
9975620 TAGTTGTCCC
* * * *
9975630 ATAATTTTTTGGTGTTATAG-G-AATCAAGTTGACAATATGTTTGCAACGTGTTGACTGCTTCTA
1 ATAATTTTTTGATGTCAT-GTGAAAT-AAGTTGACAACATGTTCGCAACGTGTTGACTGCTTCTA
9975693 TTAGGATTTTAT
64 TTAGGATTTTAT
* * *
9975705 ATAATTTTTTGATGTCATGTGAAATAGGTTGACAACATGTTCGCAACTTGTTGACTGCTTTTATT
1 ATAATTTTTTGATGTCATGTGAAATAAGTTGACAACATGTTCGCAACGTGTTGACTGCTTCTATT
*
9975770 AGGATTTTGT
66 AGGATTTTAT
9975780 ATA
1 ATA
9975783 TAAATTACTA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
74 1 0.01
75 64 0.94
76 3 0.04
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.44
Consensus pattern (75 bp):
ATAATTTTTTGATGTCATGTGAAATAAGTTGACAACATGTTCGCAACGTGTTGACTGCTTCTATT
AGGATTTTAT
Found at i:9976088 original size:37 final size:38
Alignment explanation
Indices: 9975974--9976715 Score: 478
Period size: 37 Copynumber: 20.3 Consensus size: 38
9975964 GAGGCAAAGA
* *
9975974 TCTATCCCAAC-CTTTTTTAAGTTTGCCTTAGAC-AGG
1 TCTATCCCAACTTTTTTTTAAGGTTGCCTTAGACAAGG
* * * *
9976010 TTTA-CCCTAAC--CTTTTTAAGGTTGCTTTAGACGA-G
1 TCTATCCC-AACTTTTTTTTAAGGTTGCCTTAGACAAGG
* * *
9976045 TTTATCCGAACTTTTTTTTAA-GTTGCCTTAGAAAAGG
1 TCTATCCCAACTTTTTTTTAAGGTTGCCTTAGACAAGG
* * * *
9976082 TCTATCCCAAC--CTTTTTAGGGTTG-TTGTAAACAA-G
1 TCTATCCCAACTTTTTTTTAAGGTTGCCT-TAGACAAGG
* * * *
9976117 TCTAT-GCAAC--ATTTTTAACGTTGTCTTAGAC-AGG
1 TCTATCCCAACTTTTTTTTAAGGTTGCCTTAGACAAGG
* * * * * * *
9976151 TCAATCCTAACCTTTTCTAAAAGTTGCCTTAGACAAGA
1 TCTATCCCAACTTTTTTTTAAGGTTGCCTTAGACAAGG
* * *
9976189 TTTATCCCAAC--CTTTTTAAGGTTACCTTAGACGAA--
1 TCTATCCCAACTTTTTTTTAAGGTTGCCTTAGAC-AAGG
* *
9976224 TCTATCCCAAC--CTTTTTAAGGTTGCTTTAGACAA-G
1 TCTATCCCAACTTTTTTTTAAGGTTGCCTTAGACAAGG
* *
9976259 TCTATCCCAACCTTTTATTAAGGTTGCCTTAGACAA-G
1 TCTATCCCAACTTTTTTTTAAGGTTGCCTTAGACAAGG
* *
9976296 TCTATCCCAACCTTTTTTTAAGGTTGCCTTAGAC-AGA
1 TCTATCCCAACTTTTTTTTAAGGTTGCCTTAGACAAGG
* * *
9976333 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGATAAGG
1 TCTATCCCAACTTTTTTTTAAGGTTGCCTTAGACAAGG
* ** *
9976371 TTTAT-CCAACTTTTTTAAAAGGTTGCCTTAGATAAGG
1 TCTATCCCAACTTTTTTTTAAGGTTGCCTTAGACAAGG
* * ** *
9976408 TCTAT-ACTACCCTTTTTAAAGGTTGCCTTAGACAAGG
1 TCTATCCCAACTTTTTTTTAAGGTTGCCTTAGACAAGG
* * * * *
9976445 TCTATACTAAC--TTATTTAAGGTTGCCTTAGACGA-T
1 TCTATCCCAACTTTTTTTTAAGGTTGCCTTAGACAAGG
* *
9976480 TCTATCCCAA-TCATTTTTAAAGGTTGCCTTAGACAAGG
1 TCTATCCCAACT-TTTTTTTAAGGTTGCCTTAGACAAGG
* * * *
9976518 TTTATCACAA-TTTTTTTTAAATGTTGCCTTAGATAAGG
1 TCTATCCCAACTTTTTTTT-AAGGTTGCCTTAGACAAGG
* * ** *
9976556 TCTATCCCAACTTTTTTTAAAAAGTTATCTTAGAC-TGG
1 TCTATCCCAACTTTTTTT-TAAGGTTGCCTTAGACAAGG
* *
9976594 TCTATCCCAAC--CTTTTTAAGGTTGCCTTAGAC-ATG
1 TCTATCCCAACTTTTTTTTAAGGTTGCCTTAGACAAGG
* * ** *
9976629 TCTATCACAACCTTTTTCAAAGGTTGGCCTTA-ACTAGG
1 TCTATCCCAACTTTTTTTTAAGGTT-GCCTTAGACAAGG
* ** * * *
9976667 CCTATCCCAACCCTTTTTAAAGGTTGGTCTT-GACTAGG
1 TCTATCCCAACTTTTTTTTAAGGTT-GCCTTAGACAAGG
*
9976705 TCTTTCCCAAC
1 TCTATCCCAAC
9976716 CTTTCAATAA
Statistics
Matches: 567, Mismatches: 106, Indels: 64
0.77 0.14 0.09
Matches are distributed among these distances:
33 1 0.00
34 25 0.04
35 117 0.21
36 70 0.12
37 222 0.39
38 114 0.20
39 18 0.03
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.38
Consensus pattern (38 bp):
TCTATCCCAACTTTTTTTTAAGGTTGCCTTAGACAAGG
Found at i:9976176 original size:107 final size:108
Alignment explanation
Indices: 9975974--9976523 Score: 345
Period size: 107 Copynumber: 5.1 Consensus size: 108
9975964 GAGGCAAAGA
* * * * * * *
9975974 TCTATCCCAACCTTTTTTAAGTTTGCCTTAGAC-AGGTTTA-CCCTAACCTTTTTAAGGTTGCTT
1 TCTATCCCAACC-TTTTTAAGGTTACCTTAAACGA-ATCTATCCC-AACATTTTTAACGTTGCTT
* ** * * ** *
9976037 TAGACGAGTTTATCCGAA-CTTTTTTTTAAGTTGCCTTAGAAAAGG
63 TAGACAAGTCAATCCCAACCTTTTATAAAAGTTGCCTTAGACAAGG
* ** *
9976082 TCTATCCCAACCTTTTTAGGGTT-GTTGTAAAC-AAGTCTAT-GCAACATTTTTAACGTTG-TCT
1 TCTATCCCAACCTTTTTAAGGTTACCT-TAAACGAA-TCTATCCCAACATTTTTAACGTTGCT-T
* * * *
9976143 TAGACAGGTCAATCCTAACCTTTTCTAAAAGTTGCCTTAGACAAGA
63 TAGACAAGTCAATCCCAACCTTTTATAAAAGTTGCCTTAGACAAGG
* * * *
9976189 TTTATCCCAACCTTTTTAAGGTTACCTTAGACGAATCTATCCCAACCTTTTTAAGGTTGCTTTAG
1 TCTATCCCAACCTTTTTAAGGTTACCTTAAACGAATCTATCCCAACATTTTTAACGTTGCTTTAG
* * *
9976254 ACAAGTCTATCCCAACCTTTTATTAAGGTTGCCTTAGACAA-G
66 ACAAGTCAATCCCAACCTTTTATAAAAGTTGCCTTAGACAAGG
* * * *
9976296 TCTATCCCAACCTTTTTTTAAGGTTGCCTTAGAC-AGATCTATCCCAACCTTTTTTAAAGGTTGC
1 TCTATCCCAACC--TTTTTAAGGTTACCTTAAACGA-ATCTATCCCAA-CATTTTT-AACGTTGC
* * ** * *
9976360 CTTAGATAAGGTTTAT-CCAA-CTTTTTTAAAAGGTTGCCTTAGATAAGG
61 TTTAGACAA-GTCAATCCCAACCTTTTATAAAA-GTTGCCTTAGACAAGG
* * * * * * * * *
9976408 TCTATACTACCCTTTTTAAAGGTTGCCTTAGAC-AAGGTCTATACTAAC-TTATTTAAGGTTGCC
1 TCTATCCCAACCTTTTT-AAGGTTACCTTAAACGAA--TCTATCCCAACATT-TTTAACGTTGCT
* * * * *
9976471 TTAGACGATTCTATCCCAATCATTTT-TAAAGGTTGCCTTAGACAAGG
62 TTAGACAAGTCAATCCCAA-CCTTTTATAAAAGTTGCCTTAGACAAGG
*
9976518 TTTATC
1 TCTATC
9976524 ACAATTTTTT
Statistics
Matches: 359, Mismatches: 59, Indels: 46
0.77 0.13 0.10
Matches are distributed among these distances:
105 1 0.00
106 29 0.08
107 81 0.23
108 70 0.19
109 35 0.10
110 60 0.17
111 56 0.16
112 27 0.08
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.38
Consensus pattern (108 bp):
TCTATCCCAACCTTTTTAAGGTTACCTTAAACGAATCTATCCCAACATTTTTAACGTTGCTTTAG
ACAAGTCAATCCCAACCTTTTATAAAAGTTGCCTTAGACAAGG
Found at i:9976328 original size:74 final size:72
Alignment explanation
Indices: 9975974--9976719 Score: 590
Period size: 73 Copynumber: 10.2 Consensus size: 72
9975964 GAGGCAAAGA
* * * *
9975974 TCTATCCCAACCTTTTTTAAGTTTGCCTTAGACAGGTTTA-CCCTAACC-TTTTTAAGGTTGCTT
1 TCTATCCCAACCTTTTTTAAGGTTGCCTTAGACAAGTCTATCCC-AACCTTTTTTAAGGTTGCCT
*
9976037 TAGACGAG
65 TAGACAAG
* * * * * *
9976045 TTTATCCGAACTTTTTTTTAA-GTTGCCTTAGAAAAGGTCTATCCCAACC-TTTTTAGGGTTG-T
1 TCTATCCCAAC-CTTTTTTAAGGTTGCCTTAGACAA-GTCTATCCCAACCTTTTTTAAGGTTGCC
*
9976107 TGTAAACAAG
64 T-TAGACAAG
* * * * * * * * *
9976117 TCTAT-GCAA-CATTTTTAACGTTGTCTTAGACAGGTCAATCCTAACCTTTTCTAAAAGTTGCCT
1 TCTATCCCAACCTTTTTTAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTT-TTAAGGTTGCCT
9976180 TAGACAAG
65 TAGACAAG
* * *
9976188 ATTTATCCCAACC-TTTTTAAGGTTACCTTAGACGAA-TCTATCCCAACC-TTTTTAAGGTTGCT
1 -TCTATCCCAACCTTTTTTAAGGTTGCCTTAGAC-AAGTCTATCCCAACCTTTTTTAAGGTTGCC
9976250 TTAGACAAG
64 TTAGACAAG
9976259 TCTATCCCAACCTTTTATTAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTTTAAGGTTGCC
1 TCTATCCCAACCTTTT-TTAAGGTTGCCTTAGACAAGTCTATCCCAACC-TTTTTTAAGGTTGCC
9976324 TTAGAC-AG
64 TTAGACAAG
* *
9976332 ATCTATCCCAACCTTTTTTAAAGGTTGCCTTAGATAAGGTTTAT-CCAA-CTTTTTTAAAAGGTT
1 -TCTATCCCAACCTTTTTT-AAGGTTGCCTTAGACAA-GTCTATCCCAACCTTTTTT--AAGGTT
*
9976395 GCCTTAGATAAGG
61 GCCTTAGACAA-G
* * * * * * *
9976408 TCTATACTACCCTTTTTAAAGGTTGCCTTAGACAAGGTCTATACTAA-CTTATTTAAGGTTGCCT
1 TCTATCCCAACCTTTTTTAAGGTTGCCTTAGACAA-GTCTATCCCAACCTTTTTTAAGGTTGCCT
* *
9976472 TAGACGAT
65 TAGACAAG
* * * * ** *
9976480 TCTATCCCAATCATTTTTAAAGGTTGCCTTAGACAAGGTTTATCACAATTTTTTTTAAATGTTGC
1 TCTATCCCAA-CCTTTTTTAAGGTTGCCTTAGACAA-GTCTATCCCAACCTTTTTT-AAGGTTGC
*
9976545 CTTAGATAAGG
63 CTTAGACAA-G
* * ** **
9976556 TCTATCCCAACTTTTTTTAAAAAGTTATCTTAGACTGGTCTATCCCAACC-TTTTTAAGGTTGCC
1 TCTATCCCAACCTTTTTT--AAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTTAAGGTTGCC
*
9976620 TTAGACATG
64 TTAGACAAG
* * * * *
9976629 TCTATCACAACCTTTTTCAAAGGTTGGCCTTA-ACTAGGCCTATCCCAACCCTTTTTAAAGGTTG
1 TCTATCCCAACCTTTTT-TAAGGTT-GCCTTAGAC-AAGTCTATCCCAA-CCTTTTTTAAGGTT-
* *
9976693 GTCTT-GACTAGG
61 GCCTTAGAC-AAG
*
9976705 TCTTTCCCAACCTTT
1 TCTATCCCAACCTTT
9976720 CAATAAGGGT
Statistics
Matches: 543, Mismatches: 94, Indels: 71
0.77 0.13 0.10
Matches are distributed among these distances:
69 18 0.03
70 25 0.05
71 59 0.11
72 93 0.17
73 116 0.21
74 114 0.21
75 67 0.12
76 39 0.07
77 12 0.02
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.38
Consensus pattern (72 bp):
TCTATCCCAACCTTTTTTAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTTAAGGTTGCCTT
AGACAAG
Found at i:9976424 original size:111 final size:110
Alignment explanation
Indices: 9975974--9976719 Score: 568
Period size: 111 Copynumber: 6.8 Consensus size: 110
9975964 GAGGCAAAGA
* * * *
9975974 TCTATCCCAACCTTTTTTAAGTTTGCCTTAGACAGGTTTA-CCCTAACC-TTTTTAAGGTTGCTT
1 TCTATCACAACCTTTTTTAAGGTTGCCTTAGACAGGTCTATCCC-AACCTTTTTTAAGGTTGCCT
* * * * * *
9976037 TAG-ACGAGTTTATCCGAACTTTTTTTTAA-GTTGCCTTAGAAAAGG
65 TAGAAAG-GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* * * * * * * * *
9976082 TCTATCCCAACC-TTTTTAGGGTTG-TTGTAAACAAGTCTAT-GCAA-CATTTTTAACGTTGTCT
1 TCTATCACAACCTTTTTTAAGGTTGCCT-TAGACAGGTCTATCCCAACCTTTTTTAAGGTTGCCT
* * * * * *
9976143 TAGACAGGTCAATCCTAACCTTTTCTAAAAGTTGCCTTAGACAAGA
65 TAGAAAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* * * * *
9976189 TTTATCCCAACC-TTTTTAAGGTTACCTTAGAC-GAATCTATCCCAACC-TTTTTAAGGTTGCTT
1 TCTATCACAACCTTTTTTAAGGTTGCCTTAGACAG-GTCTATCCCAACCTTTTTTAAGGTTGCCT
9976251 TAGACAA-GTCTATCCCAACCTTTTATT-AAGGTTGCCTTAGACAA-G
65 TAGA-AAGGTCTATCCCAACCTTTT-TTAAAGGTTGCCTTAGACAAGG
* *
9976296 TCTATCCCAACCTTTTTTTAAGGTTGCCTTAGACAGATCTATCCCAACCTTTTTTAAAGGTTGCC
1 TCTATCACAACC-TTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTT-AAGGTTGCC
* *
9976361 TTAGATAAGGTTTAT-CCAA-CTTTTTTAAAAGGTTGCCTTAGATAAGG
64 TTAGA-AAGGTCTATCCCAACCTTTTTT-AAAGGTTGCCTTAGACAAGG
* * * * *
9976408 TCTAT-ACTACCCTTTTTAAAGGTTGCCTTAGACAAGGTCTATACTAA-CTTATTTAAGGTTGCC
1 TCTATCAC-AACCTTTTTTAAGGTTGCCTTAGAC-AGGTCTATCCCAACCTTTTTTAAGGTTGCC
* * * *
9976471 TTAG-ACGATTCTATCCCAATCATTTTTAAAGGTTGCCTTAGACAAGG
64 TTAGAAAG-GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* ** * * * * *
9976518 TTTATCACAATTTTTTTTAAATGTTGCCTTAGATAAGGTCTATCCCAACTTTTTTTAAAAAGTTA
1 TCTATCACAACCTTTTTT-AAGGTTGCCTTAGA-CAGGTCTATCCCAACCTTTTTT--AAGGTTG
* ** *
9976583 TCTTAGACTGGTCTATCCCAACC-TTTTT-AAGGTTGCCTTAGAC-ATG
62 CCTTAGAAAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* * *
9976629 TCTATCACAACCTTTTTCAAAGGTTGGCCTTA-ACTAGGCCTATCCCAACCCTTTTTAAAGGTTG
1 TCTATCACAACCTTTTT-TAAGGTT-GCCTTAGAC-AGGTCTATCCCAA-CCTTTTTTAAGGTT-
* * *
9976693 GTCTT-GACTAGGTCTTTCCCAACCTTT
61 GCCTTAGA-AAGGTCTATCCCAACCTTT
9976720 CAATAAGGGT
Statistics
Matches: 511, Mismatches: 88, Indels: 74
0.76 0.13 0.11
Matches are distributed among these distances:
105 1 0.00
106 34 0.07
107 76 0.15
108 65 0.13
109 41 0.08
110 64 0.13
111 145 0.28
112 58 0.11
113 5 0.01
114 21 0.04
115 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.38
Consensus pattern (110 bp):
TCTATCACAACCTTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAGGTTGCCTT
AGAAAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
Found at i:9979124 original size:19 final size:18
Alignment explanation
Indices: 9979102--9979141 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
9979092 TGAATAAAAC
9979102 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
9979121 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
9979139 TTA
1 TTA
9979142 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:9982858 original size:40 final size:40
Alignment explanation
Indices: 9982814--9982942 Score: 213
Period size: 40 Copynumber: 3.2 Consensus size: 40
9982804 CTCTCGATAC
*
9982814 AATATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGT
1 AATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
9982854 AATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
1 AATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
*
9982894 AATATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGT
1 -A-ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
*
9982936 ACTATAT
1 AATATAT
9982943 CCGGACTTAG
Statistics
Matches: 84, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
40 44 0.52
41 2 0.02
42 38 0.45
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (40 bp):
AATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
Found at i:9982901 original size:42 final size:42
Alignment explanation
Indices: 9982815--9982942 Score: 215
Period size: 42 Copynumber: 3.1 Consensus size: 42
9982805 TCTCGATACA
*
9982815 ATATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGT-A-
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
9982855 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* *
9982897 ATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTACT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
9982939 ATAT
1 ATAT
9982943 CCGGACTTAG
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
40 38 0.46
41 1 0.01
42 44 0.53
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.32
Consensus pattern (42 bp):
ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
Found at i:9987514 original size:61 final size:61
Alignment explanation
Indices: 9987390--9987546 Score: 176
Period size: 61 Copynumber: 2.6 Consensus size: 61
9987380 CTTCTAAAAG
* * * * *
9987390 TTTACACATTTTATTAATTTAATTCTAA-TCTAAACAATTCAACAAATTTAACCCATAATA
1 TTTACAAAATTTATCAATTTAATTCTAATTCTAAAAAAATCAACAAATTTAACCCATAATA
* * **
9987450 TTTACAAAATTTATCATTTTAATTCTAATTCTAAAAAAATCAATAAATTTTGCCC-TCAATA
1 TTTACAAAATTTATCAATTTAATTCTAATTCTAAAAAAATCAACAAATTTAACCCAT-AATA
* * *
9987511 TTTACAAAATTTGTGAATTTAGTTCTAATT-TAAAAA
1 TTTACAAAATTTATCAATTTAATTCTAATTCTAAAAA
9987547 GTTTGAGTAG
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
60 31 0.38
61 51 0.62
ACGTcount: A:0.43, C:0.13, G:0.03, T:0.41
Consensus pattern (61 bp):
TTTACAAAATTTATCAATTTAATTCTAATTCTAAAAAAATCAACAAATTTAACCCATAATA
Found at i:9995025 original size:25 final size:24
Alignment explanation
Indices: 9995001--9995097 Score: 79
Period size: 25 Copynumber: 4.0 Consensus size: 24
9994991 GAGGAACCAT
* *
9995001 TAATCAGGAAGCTCCAGATAGCCA
1 TAATCAGGAAGCTCAAGAGAGCCA
* * *
9995025 TATATCAAGAAGTTCAAGCGAGCCA
1 TA-ATCAGGAAGCTCAAGAGAGCCA
* **
9995050 T-ATCGGGAAGCTCTGGAGAGCCA
1 TAATCAGGAAGCTCAAGAGAGCCA
*
9995073 TTAATCAGGAAGCTCACAAAGAGCC
1 -TAATCAGGAAGCTCA-AGAGAGCC
9995098 TTTCATCGGG
Statistics
Matches: 54, Mismatches: 15, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
23 16 0.30
24 3 0.06
25 29 0.54
26 6 0.11
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (24 bp):
TAATCAGGAAGCTCAAGAGAGCCA
Found at i:9995109 original size:26 final size:26
Alignment explanation
Indices: 9995066--9995140 Score: 80
Period size: 26 Copynumber: 2.9 Consensus size: 26
9995056 GAAGCTCTGG
9995066 AGAGCCATTAATCAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* * * *
9995092 AGAGCCTTTCATCGGGAAGCTCACGA
1 AGAGCCATTAATCAGGAAGCTCACAA
* *
9995118 AGAGTCATATAA-CAGGATGCTCA
1 AGAGCCAT-TAATCAGGAAGCTCA
9995141 TAAGAGTTGC
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
26 37 0.95
27 2 0.05
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.19
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:10000089 original size:18 final size:18
Alignment explanation
Indices: 10000066--10000103 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
10000056 AATATATATT
*
10000066 AACCCAAGTGCCCAACCC
1 AACCCAAGTACCCAACCC
*
10000084 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
10000102 AA
1 AA
10000104 TCATAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.47, G:0.05, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:10000096 original size:13 final size:13
Alignment explanation
Indices: 10000080--10000104 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10000070 CAAGTGCCCA
10000080 ACCCAACCCAATT
1 ACCCAACCCAATT
10000093 ACCCAACCCAAT
1 ACCCAACCCAAT
10000105 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:10000142 original size:5 final size:6
Alignment explanation
Indices: 10000129--10000169 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
10000119 ATAATTTAAT
*
10000129 AAATAA AAATAA AAATTTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
10000170 AACATATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:10000157 original size:20 final size:21
Alignment explanation
Indices: 10000121--10000164 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
10000111 AATTACAAAT
10000121 AATTTAATAAATAAAAATAAA
1 AATTTAATAAATAAAAATAAA
*
10000142 AATTTAA-AACTAAAAATAAA
1 AATTTAATAAATAAAAATAAA
10000162 AAT
1 AAT
10000165 AAAAAAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (21 bp):
AATTTAATAAATAAAAATAAA
Found at i:10000170 original size:20 final size:20
Alignment explanation
Indices: 10000132--10000170 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10000122 ATTTAATAAA
**
10000132 TAAAAATAAAAATTTAAAAC
1 TAAAAATAAAAATAAAAAAC
10000152 TAAAAATAAAAATAAAAAA
1 TAAAAATAAAAATAAAAAA
10000171 ACATATAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:10000230 original size:36 final size:36
Alignment explanation
Indices: 10000189--10000257 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
10000179 TTTTATACAA
10000189 ATAATTCGGTTAATTCGGTTAATTTGGGTAATTCGG
1 ATAATTCGGTTAATTCGGTTAATTTGGGTAATTCGG
*
10000225 ATAATTCGGTTAATTCGGTTAATTTGGTTAATT
1 ATAATTCGGTTAATTCGGTTAATTTGGGTAATT
10000258 TTATACTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.26, C:0.07, G:0.22, T:0.45
Consensus pattern (36 bp):
ATAATTCGGTTAATTCGGTTAATTTGGGTAATTCGG
Found at i:10000258 original size:9 final size:9
Alignment explanation
Indices: 10000190--10000257 Score: 100
Period size: 9 Copynumber: 7.6 Consensus size: 9
10000180 TTTATACAAA
10000190 TAATTCGGT
1 TAATTCGGT
10000199 TAATTCGGT
1 TAATTCGGT
* *
10000208 TAATTTGGG
1 TAATTCGGT
*
10000217 TAATTCGGA
1 TAATTCGGT
10000226 TAATTCGGT
1 TAATTCGGT
10000235 TAATTCGGT
1 TAATTCGGT
*
10000244 TAATTTGGT
1 TAATTCGGT
10000253 TAATT
1 TAATT
10000258 TTATACTTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 53 1.00
ACGTcount: A:0.25, C:0.07, G:0.22, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:10006518 original size:40 final size:40
Alignment explanation
Indices: 10006453--10006546 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
10006443 CCAACTTCGT
* * * *
10006453 CCAACCCAACACACC--ATGTGGGGATAAAATCGACCTAC
1 CCAACCCTACACACCAAATATGGGGATAAAATCAACCCAC
* * *
10006491 CCATCCTTACACACCAAATATGGGGATAAAATCAACCCAT
1 CCAACCCTACACACCAAATATGGGGATAAAATCAACCCAC
10006531 CCAACCCTACACACCA
1 CCAACCCTACACACCA
10006547 TAAAGTACCG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
38 12 0.27
40 33 0.73
ACGTcount: A:0.38, C:0.36, G:0.11, T:0.15
Consensus pattern (40 bp):
CCAACCCTACACACCAAATATGGGGATAAAATCAACCCAC
Found at i:10010469 original size:25 final size:26
Alignment explanation
Indices: 10010359--10010472 Score: 98
Period size: 25 Copynumber: 4.6 Consensus size: 26
10010349 ACAGCTTTCT
* *
10010359 TGAGCTTCTCGA-TACTT-GACTCTCA
1 TGAGCTTCCCGATTACTTAG-CTCACA
* * *
10010384 TGAGCTTCCCGA-TATTTGGCTCGCA
1 TGAGCTTCCCGATTACTTAGCTCACA
* *
10010409 AGAGCTTCCCGATATAC--AGCTCATA
1 TGAGCTTCCCGAT-TACTTAGCTCACA
10010434 TGAGCTTCCC-ATTACTTAGCTCACA
1 TGAGCTTCCCGATTACTTAGCTCACA
10010459 TGAGCTTCCC-ATTA
1 TGAGCTTCCCGATTA
10010473 TATGGCTCGG
Statistics
Matches: 74, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
23 3 0.04
24 2 0.03
25 66 0.89
26 1 0.01
27 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.32
Consensus pattern (26 bp):
TGAGCTTCCCGATTACTTAGCTCACA
Found at i:10010480 original size:25 final size:25
Alignment explanation
Indices: 10010382--10010494 Score: 88
Period size: 25 Copynumber: 4.5 Consensus size: 25
10010372 ACTTGACTCT
* * *
10010382 CATGAGCTTCCCGATATTTGGCTCG
1 CATGAGCTTCCCGATATATAGCTCA
* *
10010407 CAAGAGCTTCCCGATATACAGCTCA
1 CATGAGCTTCCCGATATATAGCTCA
*
10010432 TATGAGCTTCCC-AT-TACTTAGCTCA
1 CATGAGCTTCCCGATATA--TAGCTCA
* *
10010457 CATGAGCTTCCC-ATTATATGGCTCG
1 CATGAGCTTCCCGA-TATATAGCTCA
* *
10010482 GAAGAGCTTCCCG
1 CATGAGCTTCCCG
10010495 TTTACATGCT
Statistics
Matches: 70, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
23 2 0.03
24 2 0.03
25 63 0.90
26 1 0.01
27 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (25 bp):
CATGAGCTTCCCGATATATAGCTCA
Found at i:10011537 original size:30 final size:30
Alignment explanation
Indices: 10011503--10011576 Score: 121
Period size: 30 Copynumber: 2.5 Consensus size: 30
10011493 ATGTGCCTTA
*
10011503 GCCGTGTGTGACACATGGCTAGATGACATG
1 GCCGTGTGTGACACATGGCCAGATGACATG
*
10011533 GCCGTGTGTGACACATGGCCAGGTGACATG
1 GCCGTGTGTGACACATGGCCAGATGACATG
*
10011563 GCCGTGTGTAACAC
1 GCCGTGTGTGACAC
10011577 CACTTGCTCG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.22, C:0.23, G:0.34, T:0.22
Consensus pattern (30 bp):
GCCGTGTGTGACACATGGCCAGATGACATG
Found at i:10011544 original size:15 final size:15
Alignment explanation
Indices: 10011526--10011571 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 15
10011516 CATGGCTAGA
10011526 TGACATGGCCGTGTG
1 TGACATGGCCGTGTG
*
10011541 TGACACATGGCC-AG-G
1 TG--ACATGGCCGTGTG
10011556 TGACATGGCCGTGTG
1 TGACATGGCCGTGTG
10011571 T
1 T
10011572 AACACCACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
13 8 0.32
14 1 0.04
15 7 0.28
16 1 0.04
17 8 0.32
ACGTcount: A:0.17, C:0.22, G:0.37, T:0.24
Consensus pattern (15 bp):
TGACATGGCCGTGTG
Found at i:10011550 original size:17 final size:17
Alignment explanation
Indices: 10011528--10011576 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
10011518 TGGCTAGATG
10011528 ACATGGCCGTGTGTGAC
1 ACATGGCCGTGTGTGAC
*
10011545 ACATGGCC-AG-GTG--
1 ACATGGCCGTGTGTGAC
*
10011558 ACATGGCCGTGTGTAAC
1 ACATGGCCGTGTGTGAC
10011575 AC
1 AC
10011577 CACTTGCTCG
Statistics
Matches: 25, Mismatches: 3, Indels: 8
0.69 0.08 0.22
Matches are distributed among these distances:
13 8 0.32
14 1 0.04
15 5 0.20
16 1 0.04
17 10 0.40
ACGTcount: A:0.22, C:0.24, G:0.33, T:0.20
Consensus pattern (17 bp):
ACATGGCCGTGTGTGAC
Found at i:10012926 original size:53 final size:54
Alignment explanation
Indices: 10012841--10013047 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 54
10012831 TTCCTTTTTA
* * * *
10012841 AACTTACCATTGTCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
10012894 AACTCACCATTGCCATGCCTTGGCATGTTCTTACATGGAATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * ** * * *
10012948 TAGTTTATCAATGCCATGTTTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
10013003 AACTTACCAATGCCATGCCTTGGCGTGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
10013048 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 32, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 44 0.37
54 36 0.30
55 40 0.33
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:10012996 original size:55 final size:53
Alignment explanation
Indices: 10012854--10013047 Score: 165
Period size: 54 Copynumber: 3.6 Consensus size: 53
10012844 TTACCATTGT
* * *
10012854 CATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTGC
1 CATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGC
* * * * ** * *
10012907 CATGCCTTGGCATGTTCTTACATGGA-ATCTTTGCCTTATAGTAGTTTATCAATGC
1 CATGTCTTGACATGGTCTTACAT-GATATCCTTGCCTTAT-G-AACTCACCAATGC
* * * *
10012962 CATGTTTTGACATGGTCTTACATGATTTCCTTGCCTTGTAGAACTTACCAATGC
1 CATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAT-GAACTCACCAATGC
* * * * *
10013016 CATGCCTTGGCGTGGTCTTACTTGGTATCCTT
1 CATGTCTTGACATGGTCTTACATGATATCCTT
10013048 AAACCCTAAT
Statistics
Matches: 109, Mismatches: 28, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
53 31 0.28
54 39 0.36
55 39 0.36
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGC
Found at i:10015917 original size:28 final size:28
Alignment explanation
Indices: 10015856--10015913 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
10015846 TTTTTTAAGT
10015856 TATATCATTATTATTTTAAAACCTTCTTA
1 TATATCATTATTATTTTAAAA-CTTCTTA
10015885 TATATCA-TATTATTTTAAAA-TT-TTA
1 TATATCATTATTATTTTAAAACTTCTTA
10015910 TATA
1 TATA
10015914 ATATTTCATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 7 0.24
26 2 0.07
28 13 0.45
29 7 0.24
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (28 bp):
TATATCATTATTATTTTAAAACTTCTTA
Found at i:10016045 original size:26 final size:27
Alignment explanation
Indices: 10016006--10016072 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 27
10015996 ATCCCTTGTT
*
10016006 ATTT-TTTATATATAATTT-CTTTTAA
1 ATTTATTTATATATAATTTCCTTTCAA
10016031 ATTTATTTATATAT-ATTTCCTTTCAA
1 ATTTATTTATATATAATTTCCTTTCAA
* *
10016057 ATCTATTATGTATATA
1 ATTTATT-TATATATA
10016073 GTTTATTCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 8 0.23
26 21 0.60
27 6 0.17
ACGTcount: A:0.33, C:0.07, G:0.01, T:0.58
Consensus pattern (27 bp):
ATTTATTTATATATAATTTCCTTTCAA
Found at i:10018829 original size:40 final size:40
Alignment explanation
Indices: 10018785--10018861 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
10018775 GAAAAATAGG
* *
10018785 GCACATATGTGCAATCAGG-GACATCATAGTGCAAACATGA
1 GCACAAATGTGCAATCAGGAG-CACCATAGTGCAAACATGA
* *
10018825 GCACAAATGTGCTATCAGGAGCACCATAGTGCTAACA
1 GCACAAATGTGCAATCAGGAGCACCATAGTGCAAACA
10018862 AGATGCATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 31 0.97
41 1 0.03
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (40 bp):
GCACAAATGTGCAATCAGGAGCACCATAGTGCAAACATGA
Found at i:10019646 original size:10 final size:9
Alignment explanation
Indices: 10019634--10019696 Score: 74
Period size: 10 Copynumber: 6.8 Consensus size: 9
10019624 TTGATTAAAT
*
10019634 TTTTTAATG
1 TTTTTAATA
10019643 TTTTTAATA
1 TTTTTAATA
*
10019652 TTTTCAATAA
1 TTTTTAAT-A
10019662 TTTTTATATA
1 TTTTTA-ATA
10019672 TTTTTAATA
1 TTTTTAATA
10019681 TTTTTTAAT-
1 -TTTTTAATA
10019690 TTTTTAA
1 TTTTTAA
10019697 AATAAATTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
8 7 0.15
9 18 0.38
10 21 0.44
11 2 0.04
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (9 bp):
TTTTTAATA
Found at i:10019654 original size:29 final size:27
Alignment explanation
Indices: 10019628--10019734 Score: 90
Period size: 28 Copynumber: 3.7 Consensus size: 27
10019618 CAGTATTTGA
*
10019628 TTAAATTTTTTAATGTTTTTAATATTT
1 TTAAATTTTTTAATATTTTTAATATTT
* *
10019655 TCAATAATTTTTATATATTTTTAATATTT
1 TTAA-ATTTTTTA-ATATTTTTAATATTT
*
10019684 TTTAATTTTTTAAAATAAATTTTTAAAATATTT
1 TTAAATTTTTT--AAT--ATTTTT--AATATTT
*
10019717 TTTAATTTTTTAA-ATTTT
1 TTAAATTTTTTAATATTTT
10019735 AAAAAATTAA
Statistics
Matches: 66, Mismatches: 6, Indels: 15
0.76 0.07 0.17
Matches are distributed among these distances:
27 3 0.05
28 18 0.27
29 18 0.27
30 1 0.02
31 8 0.12
33 18 0.27
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.64
Consensus pattern (27 bp):
TTAAATTTTTTAATATTTTTAATATTT
Found at i:10019655 original size:18 final size:19
Alignment explanation
Indices: 10019634--10019726 Score: 77
Period size: 20 Copynumber: 4.8 Consensus size: 19
10019624 TTGATTAAAT
*
10019634 TTTTTAAT-GTTTTTAATA
1 TTTTTAATAATTTTTAATA
*
10019652 TTTTCAATAATTTTTATATA
1 TTTTTAATAATTTTTA-ATA
*
10019672 TTTTTAATATTTTTTAAT-
1 TTTTTAATAATTTTTAATA
10019690 TTTTTAAAATAAATTTTTAAAATA
1 TTTTT--AAT-AATTTTT--AATA
10019714 TTTTT--TAATTTTT
1 TTTTTAATAATTTTT
10019727 TAAATTTTAA
Statistics
Matches: 62, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
18 12 0.19
19 15 0.24
20 21 0.34
21 6 0.10
23 3 0.05
24 5 0.08
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (19 bp):
TTTTTAATAATTTTTAATA
Found at i:10019666 original size:11 final size:10
Alignment explanation
Indices: 10019634--10019726 Score: 56
Period size: 10 Copynumber: 9.5 Consensus size: 10
10019624 TTGATTAAAT
*
10019634 TTTTTAAT-G
1 TTTTTAATAA
10019643 TTTTTAAT-A
1 TTTTTAATAA
*
10019652 TTTTCAATAA
1 TTTTTAATAA
10019662 TTTTT-ATATA
1 TTTTTAATA-A
*
10019672 TTTTTAATAT
1 TTTTTAATAA
10019682 TTTTTAAT--
1 TTTTTAATAA
10019690 TTTTTAAAATAAA
1 TTTTT--AAT-AA
10019703 TTTTTAA-AA
1 TTTTTAATAA
*
10019712 TATTTT-TTAA
1 T-TTTTAATAA
10019722 TTTTT
1 TTTTT
10019727 TAAATTTTAA
Statistics
Matches: 69, Mismatches: 5, Indels: 20
0.73 0.05 0.21
Matches are distributed among these distances:
8 5 0.07
9 25 0.36
10 29 0.42
11 5 0.07
13 5 0.07
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:10019719 original size:13 final size:13
Alignment explanation
Indices: 10019686--10019721 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
10019676 TAATATTTTT
10019686 TAATTTTTTAAAA
1 TAATTTTTTAAAA
*
10019699 TAAATTTTTAAAA
1 TAATTTTTTAAAA
10019712 T-ATTTTTTAA
1 TAATTTTTTAA
10019722 TTTTTTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 8 0.38
13 13 0.62
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TAATTTTTTAAAA
Found at i:10019726 original size:9 final size:9
Alignment explanation
Indices: 10019628--10019734 Score: 58
Period size: 9 Copynumber: 11.0 Consensus size: 9
10019618 CAGTATTTGA
10019628 TTAAATTTT
1 TTAAATTTT
10019637 TT-AATGTTT
1 TTAAAT-TTT
10019646 TT-AATATTT
1 TTAAAT-TTT
* *
10019655 TCAATAATTT
1 TTAA-ATTTT
*
10019665 TTATATATTT
1 TTAAAT-TTT
10019675 TTAATATTTT
1 TTAA-ATTTT
10019685 TT-AATTTT
1 TTAAATTTT
10019693 TTAAAATAAATTT
1 TT-AAAT---TTT
10019706 TTAAAATATTT
1 TT-AAAT-TTT
*
10019717 TTTAATTTT
1 TTAAATTTT
10019726 TTAAATTTT
1 TTAAATTTT
10019735 AAAAAATTAA
Statistics
Matches: 79, Mismatches: 9, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
8 10 0.13
9 27 0.34
10 23 0.29
11 9 0.11
13 10 0.13
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.64
Consensus pattern (9 bp):
TTAAATTTT
Found at i:10020207 original size:13 final size:13
Alignment explanation
Indices: 10020189--10020249 Score: 70
Period size: 13 Copynumber: 4.7 Consensus size: 13
10020179 TCGATAATAC
*
10020189 TTTTAAAAAGTGT
1 TTTTAAAAAGTAT
10020202 TTTTAAAAAGTAT
1 TTTTAAAAAGTAT
* *
10020215 TGTGAAAAAGTATT
1 TTTTAAAAAGTA-T
*
10020229 TTTTAGAAA-TAT
1 TTTTAAAAAGTAT
10020241 TTTTAAAAA
1 TTTTAAAAA
10020250 ATTTAAATGT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
12 9 0.22
13 24 0.60
14 7 0.17
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (13 bp):
TTTTAAAAAGTAT
Found at i:10020251 original size:13 final size:13
Alignment explanation
Indices: 10020184--10020251 Score: 55
Period size: 13 Copynumber: 5.2 Consensus size: 13
10020174 GACTATCGAT
*
10020184 AATACTTTTAAAA
1 AATATTTTTAAAA
* *
10020197 AGTGTTTTTAAAA
1 AATATTTTTAAAA
* * *
10020210 AGTATTGTGAAAA
1 AATATTTTTAAAA
* * *
10020223 AGTATTTTTTAGA
1 AATATTTTTAAAA
10020236 AATATTTTTAAAA
1 AATATTTTTAAAA
10020249 AAT
1 AAT
10020252 TTAAATGTTT
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
13 42 1.00
ACGTcount: A:0.46, C:0.01, G:0.10, T:0.43
Consensus pattern (13 bp):
AATATTTTTAAAA
Found at i:10020852 original size:3 final size:3
Alignment explanation
Indices: 10020844--10020882 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
10020834 TGATTCACCG
* * *
10020844 TCA TCA TCA CCA TCA TCA TCG TCG TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
10020883 CTTTCTCGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.28, C:0.36, G:0.05, T:0.31
Consensus pattern (3 bp):
TCA
Found at i:10022538 original size:72 final size:71
Alignment explanation
Indices: 10022275--10022512 Score: 363
Period size: 72 Copynumber: 3.3 Consensus size: 71
10022265 AAAATCATAT
* ** *
10022275 ATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGTAGAACATAAATCAATATCCAAAT
1 ATAAACAACTATTGGTAAAACTAGA-TTACACATAAATAAGTAGAACATAAATCAATATCCAAAA
10022338 ACCAAAC
65 ACCAAAC
**
10022345 ATAAACAACTATTAATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGGTAAAACTAGATTACACATAAATAAGTAGAACATAAA-TCAATATCCAAAA
10022410 ACCAAAC
65 ACCAAAC
*
10022417 ATAAACAACCATTGGTAAAACTAGATTACACATAAATAAGTAGAACATAAAGTCAATATCCAAAA
1 ATAAACAACTATTGGTAAAACTAGATTACACATAAATAAGTAGAACATAAA-TCAATATCCAAAA
10022482 ACCAAAC
65 ACCAAAC
*
10022489 ATAAATAACTATTGGTAAAACTAG
1 ATAAACAACTATTGGTAAAACTAG
10022513 TTTAGCATTT
Statistics
Matches: 155, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
70 25 0.16
71 21 0.14
72 109 0.70
ACGTcount: A:0.55, C:0.16, G:0.07, T:0.23
Consensus pattern (71 bp):
ATAAACAACTATTGGTAAAACTAGATTACACATAAATAAGTAGAACATAAATCAATATCCAAAAA
CCAAAC
Found at i:10023938 original size:22 final size:23
Alignment explanation
Indices: 10023886--10023947 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 23
10023876 CGCATAAGAT
* **
10023886 AATATATATAAATATATATGGTC
1 AATATATAAAAATATATACAGTC
10023909 -ATAGTATAAAAATAT-TACAGTC
1 AATA-TATAAAAATATATACAGTC
*
10023931 AATATATAAATATATAT
1 AATATATAAAAATATAT
10023948 GGACATAGTC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
22 18 0.56
23 14 0.44
ACGTcount: A:0.52, C:0.05, G:0.06, T:0.37
Consensus pattern (23 bp):
AATATATAAAAATATATACAGTC
Found at i:10030631 original size:30 final size:30
Alignment explanation
Indices: 10030595--10030709 Score: 185
Period size: 30 Copynumber: 3.8 Consensus size: 30
10030585 ATCCATATTT
* * *
10030595 ATGGAAAATTAAAGATATGTGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
10030625 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
10030655 TTGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
10030685 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
10030710 GAGATATTGG
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 81 1.00
ACGTcount: A:0.44, C:0.06, G:0.23, T:0.27
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:10030651 original size:15 final size:15
Alignment explanation
Indices: 10030605--10030709 Score: 72
Period size: 15 Copynumber: 7.0 Consensus size: 15
10030595 ATGGAAAATT
*
10030605 AAAGATATGTGTATC
1 AAAGATATGGGTATC
* **
10030620 AAATA-ATGGAAAGTC
1 AAAGATATGGGTA-TC
10030635 AAAGATATGGGTATC
1 AAAGATATGGGTATC
* **
10030650 AAATAT-TGGAAAGTC
1 AAAGATATGGGTA-TC
10030665 AAAGATATGGGTATC
1 AAAGATATGGGTATC
* **
10030680 AAATAT-TGGAAAGTC
1 AAAGATATGGGTA-TC
10030695 AAAGATATGGGTATC
1 AAAGATATGGGTATC
10030710 GAGATATTGG
Statistics
Matches: 65, Mismatches: 19, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 40 0.62
16 13 0.20
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.27
Consensus pattern (15 bp):
AAAGATATGGGTATC
Found at i:10031501 original size:77 final size:77
Alignment explanation
Indices: 10031370--10031523 Score: 272
Period size: 77 Copynumber: 2.0 Consensus size: 77
10031360 TTCAGAGAGC
* *
10031370 CTATATCTTGTTCACTAAAGTTTTATACCCTGTGGATTTGCCAAGGAGATCAACAATAACACATT
1 CTATATCTTGTTCACTAAAGTTTTATACCCTATGGATTTGCCAAGGAGACCAACAATAACACATT
10031435 ACTCCATGCTTT
66 ACTCCATGCTTT
* *
10031447 CTATATCTTGTTCACTAAGGTTTTATACCCTATGGATTTGCCAAGGAGACCAACAATATCACATT
1 CTATATCTTGTTCACTAAAGTTTTATACCCTATGGATTTGCCAAGGAGACCAACAATAACACATT
10031512 ACTCCATGCTTT
66 ACTCCATGCTTT
10031524 AGTCTAACAA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 73 1.00
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (77 bp):
CTATATCTTGTTCACTAAAGTTTTATACCCTATGGATTTGCCAAGGAGACCAACAATAACACATT
ACTCCATGCTTT
Found at i:10033163 original size:35 final size:34
Alignment explanation
Indices: 10033098--10033180 Score: 94
Period size: 34 Copynumber: 2.4 Consensus size: 34
10033088 TGTAATCATT
* * *
10033098 AAAAATAAAAAAACTGATAAAAATTATAAAAATT
1 AAAAATAAAAAAACTGACAAAAATCATAAAAATA
* **
10033132 GAAAATAAAAAAACTGACACCAATCATTAAAAATA
1 AAAAATAAAAAAACTGACAAAAATCA-TAAAAATA
10033167 AAAAATATAAAAAA
1 AAAAATA-AAAAAA
10033181 ATATAAAAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
34 21 0.52
35 13 0.32
36 6 0.15
ACGTcount: A:0.70, C:0.07, G:0.04, T:0.19
Consensus pattern (34 bp):
AAAAATAAAAAAACTGACAAAAATCATAAAAATA
Found at i:10033181 original size:10 final size:10
Alignment explanation
Indices: 10033166--10033190 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10033156 CATTAAAAAT
10033166 AAAAAATATA
1 AAAAAATATA
10033176 AAAAAATATA
1 AAAAAATATA
10033186 AAAAA
1 AAAAA
10033191 TTGAAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAAATATA
Found at i:10034067 original size:3 final size:3
Alignment explanation
Indices: 10034059--10034089 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
10034049 AACGTGTTGC
10034059 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
10034090 ACATAACTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:10035705 original size:13 final size:13
Alignment explanation
Indices: 10035687--10035724 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
10035677 TCAATTAAAA
*
10035687 TTATATTTAATTT
1 TTATATTAAATTT
10035700 TTATATTAAATTT
1 TTATATTAAATTT
*
10035713 TTTTA-TAAATTT
1 TTATATTAAATTT
10035725 ACTATGTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TTATATTAAATTT
Found at i:10042257 original size:18 final size:19
Alignment explanation
Indices: 10042234--10042269 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
10042224 ATATTTTATT
*
10042234 TTATTAC-ACTTTAAAACG
1 TTATTACTACTTAAAAACG
10042252 TTATTACTACTTAAAAAC
1 TTATTACTACTTAAAAAC
10042270 ATATTTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.39
Consensus pattern (19 bp):
TTATTACTACTTAAAAACG
Found at i:10042322 original size:23 final size:23
Alignment explanation
Indices: 10042296--10042374 Score: 79
Period size: 23 Copynumber: 3.4 Consensus size: 23
10042286 GCATGGTGAT
*
10042296 TGATTAAATTTAAAATATAAATA
1 TGATAAAATTTAAAATATAAATA
*** *
10042319 TGATAAAATTATTTTATTTAAA-A
1 TGATAAAATT-TAAAATATAAATA
* *
10042342 TGAAAAAAATTAAAATATAAATA
1 TGATAAAATTTAAAATATAAATA
10042365 TGATAAAATT
1 TGATAAAATT
10042375 ATTTTATTTA
Statistics
Matches: 41, Mismatches: 13, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
22 7 0.17
23 27 0.66
24 7 0.17
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (23 bp):
TGATAAAATTTAAAATATAAATA
Found at i:10042372 original size:22 final size:22
Alignment explanation
Indices: 10042300--10042375 Score: 73
Period size: 22 Copynumber: 3.4 Consensus size: 22
10042290 GGTGATTGAT
*
10042300 TAAATTTAAAATATAAATATGA
1 TAAAATTAAAATATAAATATGA
** *
10042322 TAAAATTATTTTATTTAAA-ATGAA
1 TAAAATTA--AAATATAAATATG-A
*
10042346 AAAAATTAAAATATAAATATGA
1 TAAAATTAAAATATAAATATGA
10042368 TAAAATTA
1 TAAAATTA
10042376 TTTTATTTAA
Statistics
Matches: 41, Mismatches: 9, Indels: 8
0.71 0.16 0.14
Matches are distributed among these distances:
22 21 0.51
23 6 0.15
24 14 0.34
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (22 bp):
TAAAATTAAAATATAAATATGA
Found at i:10049623 original size:10 final size:10
Alignment explanation
Indices: 10049593--10049623 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
10049583 ACTACAGTTT
10049593 TTTTTTTAAA
1 TTTTTTTAAA
*
10049603 ATTTTTTAAA
1 TTTTTTTAAA
10049613 TTTTTTTAAA
1 TTTTTTTAAA
10049623 T
1 T
10049624 ATCAATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTTTTTAAA
Found at i:10050871 original size:2 final size:2
Alignment explanation
Indices: 10050864--10050892 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10050854 TTCCCCAAGG
10050864 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
10050893 TTCAAAATGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:10062970 original size:27 final size:26
Alignment explanation
Indices: 10062906--10063047 Score: 99
Period size: 26 Copynumber: 5.3 Consensus size: 26
10062896 CGTTTATATA
* * * *
10062906 TTATCTTAAATGATTTCATAAATTAT
1 TTATTTTAAATTATTTTATATATTAT
*
10062932 TTATTTTAAATTGTTTTATATATTAT
1 TTATTTTAAATTATTTTATATATTAT
* * *
10062958 TTCATTTTGAATTATTTTGTATACTAAT
1 TT-ATTTTAAATTATTTTATATA-TTAT
* * *
10062986 TTGTTTTCAATTA-TTT-TATATGAT
1 TTATTTTAAATTATTTTATATATTAT
* *
10063010 TTACTTTAAATTGCTTTTATAGTATCTAT
1 TTATTTTAAATT-ATTTTATA-TAT-TAT
10063039 TCTATTTTA
1 T-TATTTTA
10063048 TTTCTATCAT
Statistics
Matches: 90, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
24 12 0.13
25 4 0.04
26 29 0.32
27 28 0.31
28 8 0.09
29 3 0.03
30 6 0.07
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (26 bp):
TTATTTTAAATTATTTTATATATTAT
Found at i:10063068 original size:22 final size:21
Alignment explanation
Indices: 10063042--10063082 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
10063032 TATCTATTCT
10063042 ATTTTATTTCTATCATTTTAGA
1 ATTTTATTTCTAT-ATTTTAGA
* *
10063064 ATTTTTTTTTTATATTTTA
1 ATTTTATTTCTATATTTTA
10063083 TTTTAAATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.68
Consensus pattern (21 bp):
ATTTTATTTCTATATTTTAGA
Found at i:10063118 original size:22 final size:21
Alignment explanation
Indices: 10063068--10063120 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
10063058 TTTAGAATTT
10063068 TTTTTTTATATTTTATTTTAAA
1 TTTTTTTATA-TTTATTTTAAA
* *
10063090 TTGTTTTATA-TTATTTATATTA
1 TTTTTTTATATTTATTT-TA-AA
10063112 TTTTTTTAT
1 TTTTTTTAT
10063121 TGTTAATGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 6 0.23
21 2 0.08
22 18 0.69
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (21 bp):
TTTTTTTATATTTATTTTAAA
Found at i:10066811 original size:19 final size:20
Alignment explanation
Indices: 10066784--10066826 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
10066774 CTTTTTTGCA
* *
10066784 TTCATTCATTTGCACTACAT
1 TTCATTCATATGCACTAAAT
*
10066804 TTCA-TCATATGCATTAAAT
1 TTCATTCATATGCACTAAAT
10066823 TTCA
1 TTCA
10066827 CAAAAAGACC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.30, C:0.21, G:0.05, T:0.44
Consensus pattern (20 bp):
TTCATTCATATGCACTAAAT
Found at i:10075069 original size:133 final size:133
Alignment explanation
Indices: 10074831--10075306 Score: 568
Period size: 133 Copynumber: 3.6 Consensus size: 133
10074821 TACAAATCAT
* * * * * * *
10074831 AAGTCTTATCTCCCTGAAGTTGCAGGGGAGCAGACTGAAGACAATATATTTTATCTCTCTGAAGT
1 AAGTCTTATCTCCCTGAAGTTGCTGTGGAGCAGACTGAAGATAGTAGATTTTATCTCCCTAAAGT
* * * *
10074896 TGCAGTGGAGCAGGTCGAAGTTACGAACCTCATCTCCCTGAAGTTACGGTAGAGTAGGTTAAAAT
66 TGCAGTGGAGCAGGTCGAAGTTACAAACCTCATCTCCCTGAAGTTGCGGTGGAGCAGGTTAAAAT
10074961 AGC
131 AGC
* *
10074964 AAGTCTTATCTCTCC-GAAGTTGCTGTGCAGCAGACTGAAGATAGTAGATCTTATCTCCCTAAAG
1 AAGTCTTATCTC-CCTGAAGTTGCTGTGGAGCAGACTGAAGATAGTAGATTTTATCTCCCTAAAG
* * *
10075028 TTGTAGTGGAACAGGTTGAAGTTACAAACCTCATCTCCCTGAAGTTGCGGTGGAGCAGGTTAAAA
65 TTGCAGTGGAGCAGGTCGAAGTTACAAACCTCATCTCCCTGAAGTTGCGGTGGAGCAGGTTAAAA
10075093 TAGC
130 TAGC
* * *
10075097 AAGTCTTATCTCCCTGAAGTTGCGGTGAAGCAGACTGAAGATAGTAGATTTTATTTCCC-AGAAG
1 AAGTCTTATCTCCCTGAAGTTGCTGTGGAGCAGACTGAAGATAGTAGATTTTATCTCCCTA-AAG
* * * * * * *
10075161 TTGCAGTAGAGCAGATCGAAGTTACAGACCTTATCTCTCTGAAGTTGCGGTGGAGCAAGTTGAAG
65 TTGCAGTGGAGCAGGTCGAAGTTACAAACCTCATCTCCCTGAAGTTGCGGTGGAGCAGGTT-AAA
10075226 ATA-C
129 ATAGC
* * * * * *
10075230 AAATCTTATCTCCCTGAAGTTG-TAGTGGAGCAGAATGAAGATAAT-GAATCTCATC-CCACTAG
1 AAGTCTTATCTCCCTGAAGTTGCT-GTGGAGCAGACTGAAGATAGTAG-ATTTTATCTCC-CTAA
10075292 AGTTGCAGTGGAGCA
63 AGTTGCAGTGGAGCA
10075307 TATTGAAGCT
Statistics
Matches: 295, Mismatches: 40, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
132 6 0.02
133 281 0.95
134 8 0.03
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (133 bp):
AAGTCTTATCTCCCTGAAGTTGCTGTGGAGCAGACTGAAGATAGTAGATTTTATCTCCCTAAAGT
TGCAGTGGAGCAGGTCGAAGTTACAAACCTCATCTCCCTGAAGTTGCGGTGGAGCAGGTTAAAAT
AGC
Found at i:10075225 original size:89 final size:88
Alignment explanation
Indices: 10074835--10075263 Score: 243
Period size: 89 Copynumber: 4.8 Consensus size: 88
10074825 AATCATAAGT
* * * * *
10074835 CTTATCTCCCTGAAGTTGCAGG-GGAGCAGACTGAAGACA-ATATATTTTATCTCTCTGAAGTTG
1 CTTATCTCCCTGAAGTTGC-GGTGAAGCAGACTGAAGATACA-A-ATCTTATCTCCCAGAAGTTG
* *
10074898 CAGTGGAGCAGGTCGAAGTTAC-GAAC
63 CAGTAGAGCAGATCGAAGTTACAG-AC
* * * * * * *
10074924 CTCATCTCCCTGAAGTTACGGT-AGAGTAG-GTTAAAATAGCAAGTCTTATCTCTCC-GAAGTTG
1 CTTATCTCCCTGAAGTTGCGGTGA-AGCAGACTGAAGATA-CAAATCTTATCTC-CCAGAAGTTG
* * * *
10074986 CTGT-GCAGCAGA-CTGAAGATAGTAGAT
63 CAGTAG-AGCAGATC-GAAGTTA-CAGAC
* ** ** * * * * *
10075013 CTTATCTCCCTAAAGTTGTAGTGGAA-CAGGTTGAAGTTACAAACCTCATCTCCCTGAAGTTGCG
1 CTTATCTCCCTGAAGTTGCGGT-GAAGCAGACTGAAGATACAAATCTTATCTCCCAGAAGTTGCA
* * * ** *
10075077 GTGGAGCAGGT-TAAAATAGCA-AGT
65 GTAGAGCAGATCGAAGTTA-CAGA-C
* * * *
10075101 CTTATCTCCCTGAAGTTGCGGTGAAGCAGACTGAAGATAGTAGATTTTATTTCCCAGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCGGTGAAGCAGACTGAAGATA-CAAATCTTATCTCCCAGAAGTTGCA
10075166 GTAGAGCAGATCGAAGTTACAGAC
65 GTAGAGCAGATCGAAGTTACAGAC
* * * * *
10075190 CTTATCTCTCTGAAGTTGCGGTGGAGCA-AGTTGAAGATACAAATCTTATCTCCCTGAAGTTGTA
1 CTTATCTCCCTGAAGTTGCGGTGAAGCAGA-CTGAAGATACAAATCTTATCTCCCAGAAGTTGCA
*
10075254 GTGGAGCAGA
65 GTAGAGCAGA
10075264 ATGAAGATAA
Statistics
Matches: 255, Mismatches: 64, Indels: 43
0.70 0.18 0.12
Matches are distributed among these distances:
87 6 0.02
88 104 0.41
89 130 0.51
90 14 0.05
91 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (88 bp):
CTTATCTCCCTGAAGTTGCGGTGAAGCAGACTGAAGATACAAATCTTATCTCCCAGAAGTTGCAG
TAGAGCAGATCGAAGTTACAGAC
Done.