Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 42 of 325
Found at i:12599214 original size:11 final size:11
Alignment explanation
Indices: 12599195--12599228 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
12599185 TGTATGTTAT
*
12599195 TGATGTGAATA
1 TGATTTGAATA
12599206 TGATTTGAATA
1 TGATTTGAATA
12599217 TGATTTGAATA
1 TGATTTGAATA
12599228 T
1 T
12599229 TCATTGTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (11 bp):
TGATTTGAATA
Found at i:12599658 original size:46 final size:46
Alignment explanation
Indices: 12599606--12599971 Score: 422
Period size: 46 Copynumber: 8.0 Consensus size: 46
12599596 GCTCTCTGAA
* *
12599606 ATGAAATATGTAAGATCATGGTTGAAAGATACCATAGCAACATGAT
1 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
12599652 ATGAAATGTGTAAGACCATAGTTTAAAGATACCATGGCAACATGAT
1 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
12599698 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * *
12599744 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACGTGAG
1 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
12599790 ATGAAA-A-GAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATATG--TAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * * *
12599836 GGGAAATGA-ATAAGACCATGGTTGAAAGATACCATGGAAACATGAC
1 ATGAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
12599882 ATGAAA-A-GAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATATG--TAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * * *
12599928 A-GAAA-ATGAGTAAGACCATACTTGAAAGACACTATGGCATCATG
1 ATGAAATAT--GTAAGACCATGGTTGAAAGATACCATGGCAACATG
12599972 TCAAAAATAA
Statistics
Matches: 284, Mismatches: 27, Indels: 18
0.86 0.08 0.05
Matches are distributed among these distances:
44 2 0.01
45 5 0.02
46 275 0.97
48 2 0.01
ACGTcount: A:0.43, C:0.14, G:0.22, T:0.21
Consensus pattern (46 bp):
ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:12599772 original size:92 final size:92
Alignment explanation
Indices: 12599616--12599971 Score: 480
Period size: 92 Copynumber: 3.9 Consensus size: 92
12599606 ATGAAATATG
* * * * *
12599616 TAAGATCATGGTTGAAAGATACCATAGCAACATGATATGAAATGTGTAAGACCATAGTTTAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGA
* * **
12599681 TACCATGGCAACATGATATGAAATGTG
66 TACCATGGCAACATGACATGAAAAGAA
* * *
12599708 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGA
* * *
12599773 TACCATGACAACGTGAGATGAAAAGAA
66 TACCATGGCAACATGACATGAAAAGAA
** * *
12599800 TAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGA
*
12599865 TACCATGGAAACATGACATGAAAAGAA
66 TACCATGGCAACATGACATGAAAAGAA
*
12599892 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATACTTGAAAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCATAGTTGAAAG
* * *
12599956 ACACTATGGCATCATG
65 ATACCATGGCAACATG
12599972 TCAAAAATAA
Statistics
Matches: 236, Mismatches: 27, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
91 1 0.00
92 235 1.00
ACGTcount: A:0.42, C:0.14, G:0.22, T:0.21
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGA
TACCATGGCAACATGACATGAAAAGAA
Found at i:12599795 original size:138 final size:138
Alignment explanation
Indices: 12599606--12599989 Score: 477
Period size: 138 Copynumber: 2.8 Consensus size: 138
12599596 GCTCTCTGAA
* * * *
12599606 ATGAAATATGTAAGATCATGGTTGAAAGATACCAT-AGCAACATGATATGAAATGTGTAAGACCA
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGA-CAACATGACATGAAATGAGTAAGACCA
* * * **
12599670 TAGTTTAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
65 TAGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGATACCATGG
* *
12599735 CAACATGAT
130 AAACATGAC
* * * *
12599744 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACGTGAGATGAAAAGAATAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGACATGAAATGAGTAAGACCAT
* *
12599809 GGTTGAAAGATACCATGGCAACATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGA
66 AGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGATACCATGGA
12599874 AACATGAC
131 AACATGAC
* ** *
12599882 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCA
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGACATG-AAATGAGTAAGACCA
* * * * * * *
12599946 TACTTGAAAGACACTATGGCATCATGTCA-AAAATAAATAAGACC
65 TAGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACC
12599990 GTGGATGGGA
Statistics
Matches: 211, Mismatches: 33, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
137 14 0.07
138 196 0.93
139 1 0.00
ACGTcount: A:0.43, C:0.14, G:0.22, T:0.21
Consensus pattern (138 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGACATGAAATGAGTAAGACCAT
AGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGATACCATGGA
AACATGAC
Found at i:12603198 original size:7 final size:7
Alignment explanation
Indices: 12603186--12603278 Score: 114
Period size: 7 Copynumber: 13.0 Consensus size: 7
12603176 GATTTTATTA
12603186 CCTAAAC
1 CCTAAAC
12603193 CCTAAAC
1 CCTAAAC
12603200 CCTAAAAC
1 CCT-AAAC
12603208 CCTAAAC
1 CCTAAAC
*
12603215 CATAAAC
1 CCTAAAC
* *
12603222 ACTAAAG
1 CCTAAAC
*
12603229 CTTAAAC
1 CCTAAAC
12603236 CCTAAAC
1 CCTAAAC
*
12603243 CCTAAAG
1 CCTAAAC
12603250 CCTAAAAC
1 CCT-AAAC
*
12603258 CCTAAAT
1 CCTAAAC
12603265 CCTAAAC
1 CCTAAAC
12603272 CCTAAAC
1 CCTAAAC
12603279 ATTTGAGCCC
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
7 59 0.82
8 13 0.18
ACGTcount: A:0.46, C:0.35, G:0.02, T:0.16
Consensus pattern (7 bp):
CCTAAAC
Found at i:12603214 original size:22 final size:21
Alignment explanation
Indices: 12603186--12603278 Score: 114
Period size: 22 Copynumber: 4.3 Consensus size: 21
12603176 GATTTTATTA
12603186 CCTAAACCCTAAACCCTAAAAC
1 CCTAAACCCTAAACCCT-AAAC
* * *
12603208 CCTAAACCATAAACACTAAAG
1 CCTAAACCCTAAACCCTAAAC
* *
12603229 CTTAAACCCTAAACCCTAAAG
1 CCTAAACCCTAAACCCTAAAC
*
12603250 CCTAAAACCCTAAATCCTAAAC
1 CCT-AAACCCTAAACCCTAAAC
12603272 CCTAAAC
1 CCTAAAC
12603279 ATTTGAGCCC
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
21 27 0.44
22 34 0.56
ACGTcount: A:0.46, C:0.35, G:0.02, T:0.16
Consensus pattern (21 bp):
CCTAAACCCTAAACCCTAAAC
Found at i:12603235 original size:36 final size:37
Alignment explanation
Indices: 12603187--12603277 Score: 116
Period size: 36 Copynumber: 2.5 Consensus size: 37
12603177 ATTTTATTAC
*
12603187 CTAAACCCTAAACCCTAAAACCCTAAA-CC-ATAAACA
1 CTAAAGCCTAAACCCTAAAACCCTAAAGCCTA-AAACA
* *
12603223 CTAAAGCTTAAACCCT-AAACCCTAAAGCCTAAAACC
1 CTAAAGCCTAAACCCTAAAACCCTAAAGCCTAAAACA
*
12603259 CTAAATCCTAAACCCTAAA
1 CTAAAGCCTAAACCCTAAA
12603278 CATTTGAGCC
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
35 10 0.21
36 34 0.72
37 3 0.06
ACGTcount: A:0.47, C:0.34, G:0.02, T:0.16
Consensus pattern (37 bp):
CTAAAGCCTAAACCCTAAAACCCTAAAGCCTAAAACA
Found at i:12606071 original size:24 final size:22
Alignment explanation
Indices: 12606035--12606158 Score: 97
Period size: 23 Copynumber: 5.4 Consensus size: 22
12606025 GCTGATAAAC
*
12606035 AGTAAGCTTTATTGAGCTGAAA
1 AGTAAGCTCTATTGAGCTGAAA
* *
12606057 ATGGTCAGCTCTATTGAGCTGAAC
1 A--GTAAGCTCTATTGAGCTGAAA
* *
12606081 AGTAAGCTCTTTTGAGCTGAATC
1 AGTAAGCTCTATTGAGCTGAA-A
* * *
12606104 TGTAAGCTCCAATGAGCTGAAA
1 AGTAAGCTCTATTGAGCTGAAA
* *
12606126 TAGTAAGCTCT-TACGAGCTGAATC
1 -AGTAAGCTCTAT-TGAGCTGAA-A
12606150 AGTAAGCTC
1 AGTAAGCTC
12606159 ATACGAGCTG
Statistics
Matches: 81, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
22 19 0.23
23 43 0.53
24 19 0.23
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (22 bp):
AGTAAGCTCTATTGAGCTGAAA
Found at i:12606112 original size:23 final size:23
Alignment explanation
Indices: 12606063--12606158 Score: 106
Period size: 23 Copynumber: 4.2 Consensus size: 23
12606053 GAAAATGGTC
*
12606063 AGCTCTATTGAGCTGAA-CAGTA
1 AGCTCTTTTGAGCTGAATCAGTA
*
12606085 AGCTCTTTTGAGCTGAATCTGTA
1 AGCTCTTTTGAGCTGAATCAGTA
***
12606108 AGCTCCAATGAGCTGAAAT-AGTA
1 AGCTCTTTTGAGCTG-AATCAGTA
**
12606131 AGCTCTTACGAGCTGAATCAGTA
1 AGCTCTTTTGAGCTGAATCAGTA
12606154 AGCTC
1 AGCTC
12606159 ATACGAGCTG
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
22 19 0.31
23 40 0.65
24 3 0.05
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (23 bp):
AGCTCTTTTGAGCTGAATCAGTA
Found at i:12606131 original size:46 final size:45
Alignment explanation
Indices: 12606032--12606158 Score: 139
Period size: 46 Copynumber: 2.8 Consensus size: 45
12606022 TGAGCTGATA
** * * *
12606032 AACAGTAAGCT-TTATTGAGCTGAAAATGGTCAGCTCTATTGAGCTG
1 AACAGTAAGCTCTT-TTGAGCTGAATCT-GTAAGCTCCAATGAGCTG
12606078 AACAGTAAGCTCTTTTGAGCTGAATCTGTAAGCTCCAATGAGCTG
1 AACAGTAAGCTCTTTTGAGCTGAATCTGTAAGCTCCAATGAGCTG
* ** *
12606123 AAATAGTAAGCTCTTACGAGCTGAATCAGTAAGCTC
1 -AACAGTAAGCTCTTTTGAGCTGAATCTGTAAGCTC
12606159 ATACGAGCTG
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
45 15 0.21
46 53 0.76
47 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (45 bp):
AACAGTAAGCTCTTTTGAGCTGAATCTGTAAGCTCCAATGAGCTG
Found at i:12606163 original size:23 final size:23
Alignment explanation
Indices: 12606072--12606168 Score: 101
Period size: 23 Copynumber: 4.3 Consensus size: 23
12606062 CAGCTCTATT
* **
12606072 GAGCTGAA-CAGTAAGCTCTTTT
1 GAGCTGAATCAGTAAGCTCATAC
* *
12606094 GAGCTGAATCTGTAAGCTCCA-AT
1 GAGCTGAATCAGTAAGCT-CATAC
*
12606117 GAGCTGAAAT-AGTAAGCTCTTAC
1 GAGCTG-AATCAGTAAGCTCATAC
12606140 GAGCTGAATCAGTAAGCTCATAC
1 GAGCTGAATCAGTAAGCTCATAC
12606163 GAGCTG
1 GAGCTG
12606169 TGGTGAGTCC
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
22 12 0.19
23 47 0.75
24 4 0.06
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (23 bp):
GAGCTGAATCAGTAAGCTCATAC
Found at i:12606167 original size:46 final size:45
Alignment explanation
Indices: 12606072--12606168 Score: 124
Period size: 46 Copynumber: 2.1 Consensus size: 45
12606062 CAGCTCTATT
** * *
12606072 GAGCTGAACAGTAAGCTCTTTTGAGCTGAATCTGTAAGCTCCAAT
1 GAGCTGAACAGTAAGCTCTTACGAGCTGAATCAGTAAGCTCCAAC
*
12606117 GAGCTGAAATAGTAAGCTCTTACGAGCTGAATCAGTAAGCT-CATAC
1 GAGCTG-AACAGTAAGCTCTTACGAGCTGAATCAGTAAGCTCCA-AC
12606163 GAGCTG
1 GAGCTG
12606169 TGGTGAGTCC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
45 8 0.18
46 37 0.82
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (45 bp):
GAGCTGAACAGTAAGCTCTTACGAGCTGAATCAGTAAGCTCCAAC
Found at i:12609045 original size:13 final size:13
Alignment explanation
Indices: 12609018--12609050 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
12609008 CCAATCTTTG
12609018 ATTTA-TTATCCT
1 ATTTATTTATCCT
*
12609030 ATTTATTTATCTT
1 ATTTATTTATCCT
12609043 ATTTATTT
1 ATTTATTT
12609051 GTTTGTTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 5 0.26
13 14 0.74
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (13 bp):
ATTTATTTATCCT
Found at i:12609910 original size:7 final size:7
Alignment explanation
Indices: 12609898--12609928 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
12609888 TGAGAGTGAA
12609898 AGAAAAG
1 AGAAAAG
12609905 AGAAAAG
1 AGAAAAG
12609912 AGAAAAG
1 AGAAAAG
*
12609919 AGAGAAG
1 AGAAAAG
12609926 AGA
1 AGA
12609929 TGGTGAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (7 bp):
AGAAAAG
Found at i:12616034 original size:27 final size:27
Alignment explanation
Indices: 12615992--12616105 Score: 151
Period size: 27 Copynumber: 4.2 Consensus size: 27
12615982 AGGAAGCGTC
*
12615992 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
12616019 CTGGTGGCTCTTCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
12616046 CTGATGGCTCTGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
12616073 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
12616100 CTGGTG
1 CTGGTG
12616106 ACTTCGTCAC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 8 0.11
27 66 0.87
28 2 0.03
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:12616078 original size:54 final size:54
Alignment explanation
Indices: 12615996--12616102 Score: 171
Period size: 54 Copynumber: 2.0 Consensus size: 54
12615986 AGCGTCCTGG
*
12615996 TGGCTATGCCACAATTATCTGATCTGGTGGCTCTTCCACATATATCTGT-TCTGA
1 TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACA-ATATCTGTATCTGA
* *
12616050 TGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACAATATCTGTATCTG
1 TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACAATATCTGTATCTG
12616103 GTGACTTCGT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
53 8 0.16
54 41 0.84
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (54 bp):
TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACAATATCTGTATCTGA
Found at i:12616116 original size:27 final size:26
Alignment explanation
Indices: 12615992--12616123 Score: 122
Period size: 27 Copynumber: 4.9 Consensus size: 26
12615982 AGGAAGCGTC
* *
12615992 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGAT
* * *
12616019 CTGGTGGCTCTTCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGAT
* * *
12616046 CTGATGGCTCTGCCACGATTATCTGAT
1 CTGGTGACTCTGCCAC-AATATCTGAT
*
12616073 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTG-AT
*
12616100 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
12616124 GCAGCCTCGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 8 0.09
27 80 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGAT
Found at i:12626706 original size:19 final size:19
Alignment explanation
Indices: 12626682--12626743 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
12626672 AATCTTTAAG
12626682 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
12626701 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
12626720 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
12626741 GAT
1 GAT
12626744 CTTGTAATCT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
21 9 0.22
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:12627116 original size:19 final size:19
Alignment explanation
Indices: 12627092--12627135 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
12627082 TTAACCTTTT
*
12627092 TATATAGTTTATTTTCAAA
1 TATATAGTTTATTTGCAAA
* * *
12627111 TATATATTTTCTTTGCATA
1 TATATAGTTTATTTGCAAA
12627130 TATATA
1 TATATA
12627136 TTATATTATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.55
Consensus pattern (19 bp):
TATATAGTTTATTTGCAAA
Found at i:12627459 original size:24 final size:23
Alignment explanation
Indices: 12627423--12627472 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 23
12627413 TATGTTCATG
12627423 TTATTTAGTTTTGTCAT-AATAATA
1 TTATTTAGTTTTGT-ATGAA-AATA
12627447 TTATTTA-TGTTTGTATGAAAATA
1 TTATTTAGT-TTTGTATGAAAATA
12627470 TTA
1 TTA
12627473 GAATATTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
23 10 0.42
24 14 0.58
ACGTcount: A:0.34, C:0.02, G:0.10, T:0.54
Consensus pattern (23 bp):
TTATTTAGTTTTGTATGAAAATA
Found at i:12630816 original size:92 final size:92
Alignment explanation
Indices: 12630652--12630897 Score: 366
Period size: 92 Copynumber: 2.7 Consensus size: 92
12630642 ACTTTACCGA
* * *
12630652 TATCGGTATAGCAGATTATCGTATTGCACTGTACTGCATGTACATTAGCTACGCTGCGTACCTTT
1 TATCAGTATAGCAGATTACCGTATTGCACTGTACTGCATGTACATTAGCTACGCTACGTACCTTT
* *
12630717 CATTGAACTGGTAGTTTTACTGCAACC
66 CACTGAACTGGCAGTTTTACTGCAACC
* *
12630744 TATCAGTATAGCAGATTACCGTATTGCACTGTACCGCATGTACATTAGCTACGCTACGTATCTTT
1 TATCAGTATAGCAGATTACCGTATTGCACTGTACTGCATGTACATTAGCTACGCTACGTACCTTT
* *
12630809 GACTGAACTGGCAGTTTTATTGCAACC
66 CACTGAACTGGCAGTTTTACTGCAACC
* * * * *
12630836 TATCAATATAGCGGATTACCGCATTGCACTGTACTGCATGTACGTTAGCTACGCTATGTACC
1 TATCAGTATAGCAGATTACCGTATTGCACTGTACTGCATGTACATTAGCTACGCTACGTACC
12630898 ACTATCTGAT
Statistics
Matches: 138, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
92 138 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (92 bp):
TATCAGTATAGCAGATTACCGTATTGCACTGTACTGCATGTACATTAGCTACGCTACGTACCTTT
CACTGAACTGGCAGTTTTACTGCAACC
Found at i:12632242 original size:7 final size:7
Alignment explanation
Indices: 12632226--12632275 Score: 50
Period size: 7 Copynumber: 7.1 Consensus size: 7
12632216 ATCCAATACT
*
12632226 TATCACA
1 TATCAAA
12632233 TATCAAA
1 TATCAAA
12632240 TATCAAA
1 TATCAAA
12632247 TATCAAACA
1 TATC-AA-A
12632256 TAT-AAA
1 TATCAAA
*
12632262 -ATCACA
1 TATCAAA
12632268 TATCAAA
1 TATCAAA
12632275 T
1 T
12632276 TTGCATTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
5 2 0.06
6 3 0.08
7 25 0.69
8 2 0.06
9 4 0.11
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.28
Consensus pattern (7 bp):
TATCAAA
Found at i:12632273 original size:21 final size:23
Alignment explanation
Indices: 12632230--12632274 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
12632220 AATACTTATC
12632230 ACATATCAAATATCAAATATCAA
1 ACATATCAAATATCAAATATCAA
*
12632253 ACATAT-AAA-ATCACATATCAA
1 ACATATCAAATATCAAATATCAA
12632274 A
1 A
12632275 TTTGCATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 12 0.57
22 3 0.14
23 6 0.29
ACGTcount: A:0.58, C:0.18, G:0.00, T:0.24
Consensus pattern (23 bp):
ACATATCAAATATCAAATATCAA
Found at i:12632399 original size:30 final size:30
Alignment explanation
Indices: 12632358--12632414 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
12632348 ACGGGAATAA
*
12632358 GTTGTTCACACAAGCTGACAATATATTAGG
1 GTTGCTCACACAAGCTGACAATATATTAGG
*
12632388 GTTGCTCACACAAGCTGACAGTATATT
1 GTTGCTCACACAAGCTGACAATATATT
12632415 GAGGTTACTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (30 bp):
GTTGCTCACACAAGCTGACAATATATTAGG
Found at i:12633580 original size:21 final size:21
Alignment explanation
Indices: 12633556--12633595 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
12633546 CCAATCCCAT
12633556 GCAT-CAGATAATAACAACATG
1 GCATGCAGA-AATAACAACATG
*
12633577 GCATGCATAAATAACAACA
1 GCATGCAGAAATAACAACA
12633596 ATCAAACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.50, C:0.20, G:0.12, T:0.17
Consensus pattern (21 bp):
GCATGCAGAAATAACAACATG
Found at i:12635176 original size:26 final size:26
Alignment explanation
Indices: 12635145--12635252 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
12635135 TGAAATGCCC
*
12635145 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
12635171 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
12635197 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
12635223 AACATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
12635249 ATCA
1 ATCA
12635253 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:12640885 original size:26 final size:27
Alignment explanation
Indices: 12640824--12640885 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 27
12640814 AATTTTAAAA
12640824 ATTATATTTAATAAAATAAAAAATATT
1 ATTATATTTAATAAAATAAAAAATATT
* * * *
12640851 A-TATTTTTAATATAATACAATAT-TT
1 ATTATATTTAATAAAATAAAAAATATT
12640876 ATTATATTTA
1 ATTATATTTA
12640886 TGCTAGTGTC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
25 3 0.10
26 25 0.86
27 1 0.03
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (27 bp):
ATTATATTTAATAAAATAAAAAATATT
Found at i:12641936 original size:29 final size:30
Alignment explanation
Indices: 12641914--12641971 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 30
12641904 CTAACCCCCA
12641914 AAAATTTACAAAGAAACAACTAA-CAACAT
1 AAAATTTACAAAGAAACAACTAACCAACAT
12641943 AAAATTTACAAAGAAACAACTAA-CAACAT
1 AAAATTTACAAAGAAACAACTAACCAACAT
12641972 GTTTGGTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.62, C:0.17, G:0.03, T:0.17
Consensus pattern (30 bp):
AAAATTTACAAAGAAACAACTAACCAACAT
Found at i:12649906 original size:46 final size:46
Alignment explanation
Indices: 12649856--12650029 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
12649846 TGGTTGAGCA
12649856 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
12649902 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT-G
* * *
12649946 GCATCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATG
1 TC--CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
12649994 CCCGAGCTCGTTGAGTTGAGT-CGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
12650030 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
43 7 0.06
44 2 0.02
45 15 0.14
46 74 0.69
47 2 0.02
48 2 0.02
49 6 0.06
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:12650015 original size:92 final size:92
Alignment explanation
Indices: 12649853--12650022 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 92
12649843 GGATGGTTGA
* *
12649853 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
12649918 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGT-CGAGTTCGTGAGATGTAACTAG
* *
12649946 GCAT-CGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
12650010 TGAGTCGAGTTCG
66 TGAGTCGAGTTCG
12650023 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 8 0.11
92 61 0.84
93 4 0.05
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCGAGTTCGTGAGATGTAACTAG
Found at i:12652973 original size:15 final size:15
Alignment explanation
Indices: 12652953--12653020 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
12652943 GTATCTTGGG
12652953 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
12652968 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
12652983 -TTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
12652997 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
12653012 TTTCTTTAT
1 TTTCTTTAT
12653021 TCGGTTTTCT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
14 12 0.28
15 31 0.72
ACGTcount: A:0.12, C:0.18, G:0.13, T:0.57
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:12653011 original size:29 final size:29
Alignment explanation
Indices: 12652944--12653030 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 29
12652934 CATAGTATCG
* * * *
12652944 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTT-GGATTCTTTATTCTGGATTTCTC
*
12652974 TAT-TCTGGATTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTCTTTATTCTGGATTTCTC
*
12653003 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGA-TTCTTTATTCTGGATTTCT
12653031 TGTTATCTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 33 0.69
30 15 0.31
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTCTTTATTCTGGATTTCTC
Found at i:12653031 original size:14 final size:14
Alignment explanation
Indices: 12652951--12653027 Score: 68
Period size: 15 Copynumber: 5.4 Consensus size: 14
12652941 TCGTATCTTG
*
12652951 GGTTTCTTTATCCT
1 GGTTTCTTTATTCT
*
12652965 GGATCTCTTTATTCT
1 GG-TTTCTTTATTCT
*
12652980 GGATTCTTTATTCT
1 GGTTTCTTTATTCT
*
12652994 GGGTTTCTCTA-TCTT
1 -GGTTTCTTTATTC-T
12653009 GGATTTCTTTATTC-
1 GG-TTTCTTTATTCT
12653023 GGTTT
1 GGTTT
12653028 TCTTGTTATC
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
13 3 0.06
14 18 0.35
15 28 0.55
16 2 0.04
ACGTcount: A:0.10, C:0.17, G:0.17, T:0.56
Consensus pattern (14 bp):
GGTTTCTTTATTCT
Found at i:12655451 original size:46 final size:46
Alignment explanation
Indices: 12655401--12655575 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
12655391 TGGTTGAGCA
*
12655401 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
12655447 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
12655494 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
12655540 CCCGAGCTCGTTGAGTTGAGTCCGAGTT-GCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
12655576 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
43 6 0.06
45 9 0.08
46 56 0.52
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:12655557 original size:93 final size:93
Alignment explanation
Indices: 12655398--12655567 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
12655388 GGATGGTTGA
* * *
12655398 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
12655463 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
12655491 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
12655556 TGAGTCCGAGTT
66 TGAGTCCGAGTT
12655568 GCTTATGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:12658838 original size:23 final size:22
Alignment explanation
Indices: 12658802--12658856 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 22
12658792 TTAAATTTAA
12658802 AAATTTTAAAAATAAAACAACT
1 AAATTTTAAAAATAAAACAACT
* **
12658824 AAATTCTTATAAATAAAATTACT
1 AAATT-TTAAAAATAAAACAACT
*
12658847 AAATATTAAA
1 AAATTTTAAA
12658857 TTTCTTTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
22 9 0.33
23 18 0.67
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (22 bp):
AAATTTTAAAAATAAAACAACT
Found at i:12659040 original size:14 final size:14
Alignment explanation
Indices: 12659021--12659049 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
12659011 GTAGTAAAGC
12659021 ACACTAAAATTAGT
1 ACACTAAAATTAGT
12659035 ACACTAAAATTAGT
1 ACACTAAAATTAGT
12659049 A
1 A
12659050 TTAAAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.28
Consensus pattern (14 bp):
ACACTAAAATTAGT
Found at i:12661737 original size:26 final size:26
Alignment explanation
Indices: 12661708--12661815 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
12661698 TGGTACAAAT
12661708 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
12661734 TGATAACGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
12661760 TGATAATGGGTTGGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
12661786 TGAGAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
12661812 TGAT
1 TGAT
12661816 GGGCATTTCA
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.31, C:0.08, G:0.26, T:0.34
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:12663333 original size:26 final size:26
Alignment explanation
Indices: 12663304--12663353 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
12663294 ACAGTTTTAT
12663304 CCCTAGGAGATAAATT-ACCGAAATAC
1 CCCTAGG-GATAAATTGACCGAAATAC
* *
12663330 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
12663354 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (26 bp):
CCCTAGGGATAAATTGACCGAAATAC
Found at i:12666119 original size:39 final size:40
Alignment explanation
Indices: 12666049--12666172 Score: 106
Period size: 38 Copynumber: 3.3 Consensus size: 40
12666039 ATAATAATGT
* * *
12666049 ATGTTA-TATATTAT-TTTT-ATAATATTATATATTATG-
1 ATGTTATTAAATTATATTTTAATAATAATATATATTAAGA
*
12666085 ATTTCTATT-AATTCATATTTTAATAATAAT-TATATTAAGA
1 ATGT-TATTAAATT-ATATTTTAATAATAATATATATTAAGA
*
12666125 ATGTTATTAAATTATA-TTTAATAATAATCT-TATTAA-A
1 ATGTTATTAAATTATATTTTAATAATAATATATATTAAGA
*
12666162 AT-TTAATAAAT
1 ATGTTATTAAAT
12666173 AATAACAATA
Statistics
Matches: 74, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
36 11 0.15
37 8 0.11
38 21 0.28
39 20 0.27
40 14 0.19
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (40 bp):
ATGTTATTAAATTATATTTTAATAATAATATATATTAAGA
Found at i:12666328 original size:44 final size:44
Alignment explanation
Indices: 12666257--12666362 Score: 160
Period size: 44 Copynumber: 2.4 Consensus size: 44
12666247 TACAACATCT
*
12666257 ATTCCATTCAACCAAATACAATGATACTAATATAGATCTATTCC
1 ATTCCATTCAACCAAACACAATGATACTAATATAGATCTATTCC
* * *
12666301 ATTGCATTCAACCAAACACAA-GAATACTATTATAGCTCTATTCC
1 ATTCCATTCAACCAAACACAATG-ATACTAATATAGATCTATTCC
12666345 ATTCCATTCAACCAAACA
1 ATTCCATTCAACCAAACA
12666363 ACTGAATTAC
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
43 1 0.02
44 55 0.98
ACGTcount: A:0.41, C:0.25, G:0.05, T:0.29
Consensus pattern (44 bp):
ATTCCATTCAACCAAACACAATGATACTAATATAGATCTATTCC
Found at i:12666396 original size:16 final size:16
Alignment explanation
Indices: 12666375--12666426 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
12666365 TGAATTACTG
12666375 ATTACAGCTTTATTCC
1 ATTACAGCTTTATTCC
*
12666391 ATTACAG-TTCTATTAC
1 ATTACAGCTT-TATTCC
*
12666407 ATTACAGCTCTATTCC
1 ATTACAGCTTTATTCC
12666423 ATTA
1 ATTA
12666427 TAACCCTGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 2 0.06
16 28 0.90
17 1 0.03
ACGTcount: A:0.29, C:0.23, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTACAGCTTTATTCC
Found at i:12667065 original size:27 final size:27
Alignment explanation
Indices: 12666983--12667069 Score: 74
Period size: 27 Copynumber: 3.2 Consensus size: 27
12666973 TGGTGTAATT
*
12666983 AAAAAAACTTGAGACACCATGAAATTAA
1 AAAAAAACTTGAAACACCATGAAA-TAA
* *
12667011 AAATACATAA-TT-ATAA-A-CATTAACTAA
1 AAA-A-A-AACTTGA-AACACCATGAAATAA
12667038 AAAAAAACTTGAAACACCATGAAATAA
1 AAAAAAACTTGAAACACCATGAAATAA
12667065 AAAAA
1 AAAAA
12667070 TACATATTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 17
0.68 0.07 0.25
Matches are distributed among these distances:
24 2 0.04
25 5 0.11
26 3 0.07
27 19 0.41
28 8 0.17
29 3 0.07
30 4 0.09
31 2 0.04
ACGTcount: A:0.62, C:0.13, G:0.06, T:0.20
Consensus pattern (27 bp):
AAAAAAACTTGAAACACCATGAAATAA
Found at i:12670731 original size:16 final size:14
Alignment explanation
Indices: 12670690--12670724 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
12670680 TTCTTGATTT
12670690 TAATTTTCA-TAAAA
1 TAATTTT-ATTAAAA
12670704 TAATTTTATTAAAA
1 TAATTTTATTAAAA
12670718 TAATTTT
1 TAATTTT
12670725 TTGTTAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 1 0.05
14 19 0.95
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (14 bp):
TAATTTTATTAAAA
Found at i:12674085 original size:29 final size:29
Alignment explanation
Indices: 12674043--12674100 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
12674033 GAATCTTCTA
12674043 ACTGTTAGAAACTTTTATCAGATAGTCTT
1 ACTGTTAGAAACTTTTATCAGATAGTCTT
12674072 ACTGTTAGAAACTTTTATCAGATAGTCTT
1 ACTGTTAGAAACTTTTATCAGATAGTCTT
12674101 TCTTTTTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (29 bp):
ACTGTTAGAAACTTTTATCAGATAGTCTT
Found at i:12676696 original size:11 final size:11
Alignment explanation
Indices: 12676680--12676704 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
12676670 GATGAATATT
12676680 TTTATTTAAAA
1 TTTATTTAAAA
12676691 TTTATTTAAAA
1 TTTATTTAAAA
12676702 TTT
1 TTT
12676705 TGGTAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTATTTAAAA
Found at i:12677977 original size:30 final size:33
Alignment explanation
Indices: 12677941--12678007 Score: 86
Period size: 36 Copynumber: 2.0 Consensus size: 33
12677931 TTTACAAACA
12677941 AACAGATC-T-TGGCC-AGAATGTGAATAATGT
1 AACAGATCATATGGCCAAGAATGTGAATAATGT
12677971 AACAGATCATATGGCCGGAAAGAATGTGAATAATGT
1 AACAGATCATATGGCC---AAGAATGTGAATAATGT
12678007 A
1 A
12678008 CTTTGCTACA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
30 8 0.26
31 1 0.03
32 5 0.16
36 17 0.55
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (33 bp):
AACAGATCATATGGCCAAGAATGTGAATAATGT
Found at i:12685332 original size:15 final size:15
Alignment explanation
Indices: 12685308--12685337 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
12685298 ACATCTAATA
*
12685308 TAAACTAACCCAAAC
1 TAAACCAACCCAAAC
12685323 TAAACCAACCCAAAC
1 TAAACCAACCCAAAC
12685338 CCACCTAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.37, G:0.00, T:0.10
Consensus pattern (15 bp):
TAAACCAACCCAAAC
Found at i:12686936 original size:22 final size:23
Alignment explanation
Indices: 12686898--12686953 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 23
12686888 ATATACCTTT
**
12686898 TTTATTATTT-TACTTTATTATA
1 TTTATTATTTATACTTTAACATA
*
12686920 TTTATTATTTAT-TTTTAACATA
1 TTTATTATTTATACTTTAACATA
12686942 -TTATTATTTATA
1 TTTATTATTTATA
12686954 TCATCATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 11 0.38
22 17 0.59
23 1 0.03
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (23 bp):
TTTATTATTTATACTTTAACATA
Found at i:12687664 original size:30 final size:30
Alignment explanation
Indices: 12687628--12687694 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
12687618 ATGTACTTTT
12687628 CCTATATATCATGTACATACATTTTTCATA
1 CCTATATATCATGTACATACATTTTTCATA
12687658 CCTATATATCATGTACATACATTTTTCATA
1 CCTATATATCATGTACATACATTTTTCATA
12687688 --TATATAT
1 CCTATATAT
12687695 GTATATATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
28 7 0.19
30 30 0.81
ACGTcount: A:0.34, C:0.18, G:0.03, T:0.45
Consensus pattern (30 bp):
CCTATATATCATGTACATACATTTTTCATA
Found at i:12703891 original size:7 final size:7
Alignment explanation
Indices: 12703876--12703915 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
12703866 TTTTGATAAT
*
12703876 GTTTTGG
1 GTTTAGG
12703883 GTTTAGG
1 GTTTAGG
12703890 GTTTAGG
1 GTTTAGG
*
12703897 ATTTAGG
1 GTTTAGG
12703904 GTTTAGG
1 GTTTAGG
12703911 GTTTA
1 GTTTA
12703916 TAGTTTGTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.47
Consensus pattern (7 bp):
GTTTAGG
Found at i:12707032 original size:8 final size:7
Alignment explanation
Indices: 12707011--12707046 Score: 56
Period size: 7 Copynumber: 5.1 Consensus size: 7
12707001 ACCCTTTCTC
12707011 AAAGAAA
1 AAAGAAA
12707018 AATA-AAA
1 AA-AGAAA
12707025 AAAGAAA
1 AAAGAAA
12707032 AAAGAAA
1 AAAGAAA
12707039 AAAGAAA
1 AAAGAAA
12707046 A
1 A
12707047 GAAATAATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 1 0.04
7 25 0.93
8 1 0.04
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (7 bp):
AAAGAAA
Found at i:12707459 original size:20 final size:20
Alignment explanation
Indices: 12707421--12707459 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
12707411 TGGAACAAGA
*
12707421 ATATCGATACCTTAGGAAAT
1 ATATCGATACCTTAAGAAAT
*
12707441 ATATCGATACTTTAAGAAA
1 ATATCGATACCTTAAGAAA
12707460 AGTATTGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.31
Consensus pattern (20 bp):
ATATCGATACCTTAAGAAAT
Found at i:12710185 original size:27 final size:27
Alignment explanation
Indices: 12709991--12710184 Score: 262
Period size: 27 Copynumber: 7.1 Consensus size: 27
12709981 CCCTAATTGA
* * *
12709991 TAAAATGACTATTTTTTCCTTTATGTGG
1 TAAAATGACT-GTTTTGCCCTTATGTGG
*
12710019 TAAAATGACTGTTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
12710046 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
12710073 TAAAATGATTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
12710100 TAAAATAACTGTTTTGCCCTTATGTTG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
12710127 TAAAATGATTGTTTCGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
12710154 TAAATTGACTGTTTTGCCCCTATGTGA
1 TAAAATGACTGTTTTGCCCTTATGTGG
12710181 TAAA
1 TAAA
12710185 TGTTTATATT
Statistics
Matches: 146, Mismatches: 20, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
27 136 0.93
28 10 0.07
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.43
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:12710540 original size:18 final size:17
Alignment explanation
Indices: 12710513--12710546 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
12710503 ACATATATGT
12710513 ACTGTTACTGTTACTGC
1 ACTGTTACTGTTACTGC
12710530 ACTGTTTACTGTTACTG
1 ACTG-TTACTGTTACTG
12710547 TAATGGGCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.44
Consensus pattern (17 bp):
ACTGTTACTGTTACTGC
Found at i:12711552 original size:18 final size:18
Alignment explanation
Indices: 12711512--12711553 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
12711502 AAAAATTTTC
*
12711512 GCTTTT-TCACTCACAAT
1 GCTTTTATCACTAACAAT
* *
12711529 GTTTTTATCACTAACCAT
1 GCTTTTATCACTAACAAT
12711547 GCTTTTA
1 GCTTTTA
12711554 ACCTTCACAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.24, C:0.24, G:0.07, T:0.45
Consensus pattern (18 bp):
GCTTTTATCACTAACAAT
Found at i:12711570 original size:18 final size:18
Alignment explanation
Indices: 12711519--12711570 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
12711509 TTCGCTTTTT
*
12711519 CACTCACAATGTTTTTAT
1 CACTCACAATGTTTTTAA
* * *
12711537 CACTAACCATGCTTTTAA
1 CACTCACAATGTTTTTAA
12711555 C-CTTCACAATGTTTTT
1 CAC-TCACAATGTTTTT
12711571 TTTGCTCGCA
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
17 1 0.04
18 25 0.96
ACGTcount: A:0.27, C:0.25, G:0.06, T:0.42
Consensus pattern (18 bp):
CACTCACAATGTTTTTAA
Found at i:12712415 original size:27 final size:27
Alignment explanation
Indices: 12712385--12712448 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 27
12712375 TTTCTCATCC
*
12712385 TTATTTTACCCCCCGTAAAATTTTTGA
1 TTATTTTACCCCCCATAAAATTTTTGA
* * *
12712412 TTATTTTA-CGCCCATAAATTTTTTTA
1 TTATTTTACCCCCCATAAAATTTTTGA
12712438 TTATTTTACCC
1 TTATTTTACCC
12712449 ATGGTAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 22 0.71
27 9 0.29
ACGTcount: A:0.25, C:0.20, G:0.05, T:0.50
Consensus pattern (27 bp):
TTATTTTACCCCCCATAAAATTTTTGA
Found at i:12712461 original size:26 final size:25
Alignment explanation
Indices: 12712385--12712461 Score: 66
Period size: 27 Copynumber: 2.9 Consensus size: 25
12712375 TTTCTCATCC
*
12712385 TTATTTTACCCCCCGTAAAATTTTTGA
1 TTATTTTA--CCCAGTAAAATTTTTGA
* *
12712412 TTATTTTACGCCCA-TAAATTTTTTTA
1 TTATTTTA--CCCAGTAAAATTTTTGA
12712438 TTATTTTACCCATGGTAAAATTTT
1 TTATTTTACCCA--GTAAAATTTT
12712462 GAGAAAAGAT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
24 4 0.10
26 18 0.43
27 20 0.48
ACGTcount: A:0.27, C:0.17, G:0.06, T:0.49
Consensus pattern (25 bp):
TTATTTTACCCAGTAAAATTTTTGA
Found at i:12720277 original size:27 final size:27
Alignment explanation
Indices: 12720237--12720324 Score: 97
Period size: 27 Copynumber: 3.2 Consensus size: 27
12720227 AGGAAGCGTC
*
12720237 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* * *
12720264 CTGGTGGCTCTGCCATATATT-TTTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
12720291 CTGGTGGCTCTACCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
12720319 CTGGTG
1 CTGGTG
12720325 ACTTTGTCCC
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
26 3 0.06
27 36 0.73
28 10 0.20
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:12720343 original size:54 final size:53
Alignment explanation
Indices: 12720237--12720348 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 53
12720227 AGGAAGCGTC
* *
12720237 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCATATATTTTTGTT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCATATA-TTTTGTT
* * *
12720291 CTGGTGGCTCTACCACGATTATCTGTATCTGGTGACTTTGTCCCAT-TA-TTTGTT
1 CTGGTGGCTATACCACAATTATCTG-ATCTGGTGACTCTG--CCATATATTTTGTT
12720345 CTGG
1 CTGG
12720349 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
54 32 0.64
55 12 0.24
56 2 0.04
57 4 0.08
ACGTcount: A:0.15, C:0.21, G:0.22, T:0.41
Consensus pattern (53 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCATATATTTTGTT
Found at i:12725947 original size:22 final size:22
Alignment explanation
Indices: 12725915--12725957 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
12725905 GAATGATCTA
*
12725915 TTGATTGTTAAAATATATTCAG
1 TTGATTATTAAAATATATTCAG
*
12725937 TTGATTATTAATATATATTCA
1 TTGATTATTAAAATATATTCA
12725958 AGAATTGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.09, T:0.49
Consensus pattern (22 bp):
TTGATTATTAAAATATATTCAG
Found at i:12727605 original size:5 final size:5
Alignment explanation
Indices: 12727592--12727725 Score: 67
Period size: 5 Copynumber: 27.0 Consensus size: 5
12727582 AAAGCAAAAT
* * * ** * *
12727592 AGAAA AGAAC AGAAC AAAAC AAGTA- A-AAC AGAAC AGAAC TTAAT AGAGC
1 AGAAC AGAAC AGAAC AGAAC -AGAAC AGAAC AGAAC AGAAC AGAAC AGAAC
* * * * *
12727641 AGAAC AGAAC ATAAT GGAAC AGAAC AGAAC AGAAC TA-AGC AGAAC AGAAT
1 AGAAC AGAAC AGAAC AGAAC AGAAC AGAAC AGAAC -AGAAC AGAAC AGAAC
* * ** * *
12727691 GGAGC AGAGT AGAAC GGAAC AGAGC AGAAC AGAAC
1 AGAAC AGAAC AGAAC AGAAC AGAAC AGAAC AGAAC
12727726 GTGTATGTTT
Statistics
Matches: 91, Mismatches: 33, Indels: 10
0.68 0.25 0.07
Matches are distributed among these distances:
3 1 0.01
4 3 0.03
5 84 0.92
6 3 0.03
ACGTcount: A:0.55, C:0.16, G:0.22, T:0.07
Consensus pattern (5 bp):
AGAAC
Found at i:12727645 original size:20 final size:20
Alignment explanation
Indices: 12727620--12727689 Score: 88
Period size: 20 Copynumber: 3.5 Consensus size: 20
12727610 ACAAGTAAAA
*
12727620 CAGAACAGAACTTAATAGAG
1 CAGAACAGAACATAATAGAG
* *
12727640 CAGAACAGAACATAATGGAA
1 CAGAACAGAACATAATAGAG
*
12727660 CAGAACAGAACAGAACTA-AG
1 CAGAACAGAACATAA-TAGAG
12727680 CAGAACAGAA
1 CAGAACAGAA
12727690 TGGAGCAGAG
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 42 0.98
21 1 0.02
ACGTcount: A:0.54, C:0.17, G:0.20, T:0.09
Consensus pattern (20 bp):
CAGAACAGAACATAATAGAG
Found at i:12727684 original size:35 final size:35
Alignment explanation
Indices: 12727622--12727724 Score: 100
Period size: 35 Copynumber: 2.9 Consensus size: 35
12727612 AAGTAAAACA
** * * * *
12727622 GAACAGAACTTAATAGAGCAGAACAGAACATAATG
1 GAACAGAACAGAACAGAACAGAGCAGAACAGAATG
12727657 GAACAGAACAGAACAGAACTA-AGCAGAACAGAATG
1 GAACAGAACAGAACAGAAC-AGAGCAGAACAGAATG
* ** *
12727692 GAGCAGAGTAGAACGGAACAGAGCAGAACAGAA
1 GAACAGAACAGAACAGAACAGAGCAGAACAGAA
12727725 CGTGTATGTT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
34 1 0.02
35 54 0.96
36 1 0.02
ACGTcount: A:0.51, C:0.16, G:0.25, T:0.08
Consensus pattern (35 bp):
GAACAGAACAGAACAGAACAGAGCAGAACAGAATG
Found at i:12736172 original size:17 final size:18
Alignment explanation
Indices: 12736150--12736183 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
12736140 TTGGGCCGTG
*
12736150 TGTGGG-CCACATGGGCT
1 TGTGGGTCCACACGGGCT
12736167 TGTGGGTCCACACGGGC
1 TGTGGGTCCACACGGGC
12736184 AAGCCCCATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.12, C:0.26, G:0.41, T:0.21
Consensus pattern (18 bp):
TGTGGGTCCACACGGGCT
Found at i:12739365 original size:20 final size:20
Alignment explanation
Indices: 12739341--12739408 Score: 84
Period size: 20 Copynumber: 3.2 Consensus size: 20
12739331 AATCTATTTA
12739341 GTTTATATAT-ATATATTGG
1 GTTTATATATAATATATTGG
12739360 AGTTTAGATATATAATACATATTGG
1 -GTTT--ATATATAAT--ATATTGG
12739385 GTTTATATATAATATATTGG
1 GTTTATATATAATATATTGG
12739405 GTTT
1 GTTT
12739409 GGGCTTGTAG
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
20 15 0.35
22 15 0.35
23 2 0.05
24 4 0.09
25 7 0.16
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.49
Consensus pattern (20 bp):
GTTTATATATAATATATTGG
Found at i:12749369 original size:42 final size:42
Alignment explanation
Indices: 12749322--12749468 Score: 215
Period size: 42 Copynumber: 3.5 Consensus size: 42
12749312 CCACATGGAT
12749322 GTGTGGGAAGGCCACACGAGCGTGTGGGGAGGCCACACGGGC
1 GTGTGGGAAGGCCACACGAGCGTGTGGGGAGGCCACACGGGC
* *
12749364 GTGTGGGGAGGCCACACGGGCGTGTGGGGAGGCCACACGGGC
1 GTGTGGGAAGGCCACACGAGCGTGTGGGGAGGCCACACGGGC
* * *
12749406 GTGTGGGGAGGCCACACGAGTGTGTGGGGAGGCCACACGGCC
1 GTGTGGGAAGGCCACACGAGCGTGTGGGGAGGCCACACGGGC
12749448 ATGTGTTGGGAA-GCCACACGA
1 --GTG-TGGGAAGGCCACACGA
12749469 CTTGGCCACA
Statistics
Matches: 96, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
42 79 0.82
44 12 0.12
45 5 0.05
ACGTcount: A:0.18, C:0.23, G:0.47, T:0.12
Consensus pattern (42 bp):
GTGTGGGAAGGCCACACGAGCGTGTGGGGAGGCCACACGGGC
Found at i:12749409 original size:63 final size:63
Alignment explanation
Indices: 12749322--12749468 Score: 215
Period size: 63 Copynumber: 2.3 Consensus size: 63
12749312 CCACATGGAT
*
12749322 GTGTGGGAAGGCCACACGAGCGTGTGGGGAGGCCACACGGGCGTGTGGGGAGGCCACACGGGC
1 GTGTGGGAAGGCCACACGAGCGTGTGGGGAGGCCACACGAGCGTGTGGGGAGGCCACACGGGC
* * * *
12749385 GTGTGGGGAGGCCACACGGGCGTGTGGGGAGGCCACACGAGTGTGTGGGGAGGCCACACGGCC
1 GTGTGGGAAGGCCACACGAGCGTGTGGGGAGGCCACACGAGCGTGTGGGGAGGCCACACGGGC
12749448 ATGTGTTGGGAA-GCCACACGA
1 --GTG-TGGGAAGGCCACACGA
12749469 CTTGGCCACA
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
63 58 0.78
65 11 0.15
66 5 0.07
ACGTcount: A:0.18, C:0.23, G:0.47, T:0.12
Consensus pattern (63 bp):
GTGTGGGAAGGCCACACGAGCGTGTGGGGAGGCCACACGAGCGTGTGGGGAGGCCACACGGGC
Found at i:12749452 original size:21 final size:21
Alignment explanation
Indices: 12749322--12749445 Score: 212
Period size: 21 Copynumber: 5.9 Consensus size: 21
12749312 CCACATGGAT
* *
12749322 GTGTGGGAAGGCCACACGAGC
1 GTGTGGGGAGGCCACACGGGC
12749343 GTGTGGGGAGGCCACACGGGC
1 GTGTGGGGAGGCCACACGGGC
12749364 GTGTGGGGAGGCCACACGGGC
1 GTGTGGGGAGGCCACACGGGC
12749385 GTGTGGGGAGGCCACACGGGC
1 GTGTGGGGAGGCCACACGGGC
* *
12749406 GTGTGGGGAGGCCACACGAGT
1 GTGTGGGGAGGCCACACGGGC
12749427 GTGTGGGGAGGCCACACGG
1 GTGTGGGGAGGCCACACGG
12749446 CCATGTGTTG
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 98 1.00
ACGTcount: A:0.17, C:0.23, G:0.50, T:0.10
Consensus pattern (21 bp):
GTGTGGGGAGGCCACACGGGC
Found at i:12752077 original size:103 final size:103
Alignment explanation
Indices: 12751898--12752101 Score: 354
Period size: 103 Copynumber: 2.0 Consensus size: 103
12751888 AAGGGTTGAC
* *
12751898 TTGATTCACTTGAATCCAATTCAATCTTCAAATGCCAATGACTGGTTTCCATAGATGGACTATAG
1 TTGATTCACTTGAATCCAATTAAACCTTCAAATGCCAATGACTGGTTTCCATAGATGGACTATAG
*
12751963 TATCTTCACTAACACGGAACATAAATAGGTTTAAAGAT
66 TATCTTCACTAACACGGAACATAAATAAGTTTAAAGAT
* * *
12752001 TTGATTCACTTGAATCCAATTAAACCTTCAAATGCCAGTGATTGGTTTCCATAGATGGATTATAG
1 TTGATTCACTTGAATCCAATTAAACCTTCAAATGCCAATGACTGGTTTCCATAGATGGACTATAG
12752066 TATCTTCACTAACACGGAACATAAATAAGTTTAAAG
66 TATCTTCACTAACACGGAACATAAATAAGTTTAAAG
12752102 GTTTTCTTCA
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
103 95 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (103 bp):
TTGATTCACTTGAATCCAATTAAACCTTCAAATGCCAATGACTGGTTTCCATAGATGGACTATAG
TATCTTCACTAACACGGAACATAAATAAGTTTAAAGAT
Found at i:12752430 original size:25 final size:25
Alignment explanation
Indices: 12752402--12752450 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
12752392 AATATATTAT
**
12752402 AAATTTATCATTTGGTTTTTATTTC
1 AAATTTATCATTTGAATTTTATTTC
*
12752427 AAATTTATGATTTGAATTTTATTT
1 AAATTTATCATTTGAATTTTATTT
12752451 TTTTTATTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.59
Consensus pattern (25 bp):
AAATTTATCATTTGAATTTTATTTC
Found at i:12761078 original size:44 final size:42
Alignment explanation
Indices: 12761017--12761173 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 42
12761007 TGTGTTATCG
* *
12761017 TGTAAGACCACCTCTGGGACGTTGGCATCGACTTATGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TT-TGATTTACA
* * * *
12761061 TGTAAGACCATGTCTGGGACATCGGCATCGTATTTAATTT-CA
1 TGTAAGACCACGTCTGGGACGTTGGCATCG-ATTTGATTTACA
*
12761103 TGTAAGACC-CTGTTTGGGACAG-TGGCATCGATATTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCG--ATTTGATTTACA
12761146 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
12761174 TGTATGAGCT
Statistics
Matches: 94, Mismatches: 12, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
42 28 0.30
43 36 0.38
44 29 0.31
45 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATTTGATTTACA
Found at i:12781129 original size:24 final size:24
Alignment explanation
Indices: 12781096--12781141 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
12781086 ATTGTTGTGG
*
12781096 TGATGCTCCCTAATCAAAAGGAAA
1 TGATGCTCCCTAACCAAAAGGAAA
* *
12781120 TGATGGTCCCTGACCAAAAGGA
1 TGATGCTCCCTAACCAAAAGGA
12781142 GTATTGAGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (24 bp):
TGATGCTCCCTAACCAAAAGGAAA
Found at i:12784378 original size:21 final size:21
Alignment explanation
Indices: 12784352--12784392 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
12784342 AATGCTCACT
12784352 CTTGTCTCCTATTGAAATTAC
1 CTTGTCTCCTATTGAAATTAC
* *
12784373 CTTGTCTTCTGTTGAAATTA
1 CTTGTCTCCTATTGAAATTA
12784393 TTCTTTTAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.20, G:0.12, T:0.46
Consensus pattern (21 bp):
CTTGTCTCCTATTGAAATTAC
Found at i:12790904 original size:20 final size:20
Alignment explanation
Indices: 12790879--12790945 Score: 53
Period size: 20 Copynumber: 3.0 Consensus size: 20
12790869 TATTTGGGCA
12790879 TCCGAGCTCGTTGAGTTGAG
1 TCCGAGCTCGTTGAGTTGAG
* * *
12790899 TCCGAGTTCACTTATAGATGTGAATG
1 TCCGAGCTC-GTT-GAG-T-TG-A-G
12790925 TCCGAGCTCGTTGAGTTGAG
1 TCCGAGCTCGTTGAGTTGAG
12790945 T
1 T
12790946 TTGAGTTCGT
Statistics
Matches: 35, Mismatches: 6, Indels: 12
0.66 0.11 0.23
Matches are distributed among these distances:
20 10 0.29
21 3 0.09
22 4 0.11
23 2 0.06
24 4 0.11
25 3 0.09
26 9 0.26
ACGTcount: A:0.19, C:0.18, G:0.30, T:0.33
Consensus pattern (20 bp):
TCCGAGCTCGTTGAGTTGAG
Found at i:12790931 original size:46 final size:46
Alignment explanation
Indices: 12790879--12791143 Score: 242
Period size: 46 Copynumber: 5.7 Consensus size: 46
12790869 TATTTGGGCA
12790879 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGAATG
** * *
12790925 TCCGAGCTCGTTGAGTTGAGTTTGAGTT--CGT-GAGATGT-AACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGAA-T--G
* * * *
12790970 CATCTGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGAATG
* *
12791018 TCCGAGCTCGTTGAGTTGAGTCTGAGTT--C-T-GAGATGT-AACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGAA-T--G
* * * *
12791062 CATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGAATG
*
12791110 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
12791144 CGGGCGGGTT
Statistics
Matches: 174, Mismatches: 26, Indels: 38
0.73 0.11 0.16
Matches are distributed among these distances:
41 2 0.01
42 7 0.04
43 8 0.05
44 4 0.02
45 1 0.01
46 109 0.63
47 24 0.14
48 3 0.02
49 3 0.02
50 9 0.05
51 4 0.02
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGAATG
Found at i:12791099 original size:92 final size:93
Alignment explanation
Indices: 12790875--12791138 Score: 449
Period size: 92 Copynumber: 2.8 Consensus size: 93
12790865 AGGATATTTG
* * *
12790875 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGAATGTCCGAGCTCGTTGAG
1 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAG
*
12790940 TTGAGTTTGAGTTCGTGAGATGTAACTA
66 TTGAGTCTGAGTTCGTGAGATGTAACTA
*
12790968 GGCATCTGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAG
1 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAG
12791033 TTGAGTCTGAGTTC-TGAGATGTAACTA
66 TTGAGTCTGAGTTCGTGAGATGTAACTA
* *
12791060 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAG
*
12791125 TTGAGTCCGAGTTC
66 TTGAGTCTGAGTTC
12791139 ACTTACGGGC
Statistics
Matches: 162, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 88 0.54
93 74 0.46
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.31
Consensus pattern (93 bp):
GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAG
TTGAGTCTGAGTTCGTGAGATGTAACTA
Found at i:12795542 original size:18 final size:18
Alignment explanation
Indices: 12795519--12795555 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
12795509 CCAATTATAT
12795519 TTTTTTTATAATTTCTAA
1 TTTTTTTATAATTTCTAA
*
12795537 TTTTTTTATAATTTTTAA
1 TTTTTTTATAATTTCTAA
12795555 T
1 T
12795556 ACTTATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTTTTATAATTTCTAA
Found at i:12800109 original size:22 final size:21
Alignment explanation
Indices: 12800074--12800147 Score: 64
Period size: 22 Copynumber: 3.6 Consensus size: 21
12800064 AAAAGGTATC
* *
12800074 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
12800095 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
12800118 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
12800137 TGC-AATCATAT
1 TACAAATCATAT
12800148 ATAAGATTGT
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.35
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:12800134 original size:19 final size:19
Alignment explanation
Indices: 12800110--12800200 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
12800100 AATCATATCT
12800110 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
12800129 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
12800147 TATAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
12800164 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
12800183 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
12800201 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.22
18 15 0.22
19 37 0.55
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:12800164 original size:35 final size:37
Alignment explanation
Indices: 12800112--12800200 Score: 137
Period size: 35 Copynumber: 2.4 Consensus size: 37
12800102 TCATATCTTC
12800112 TAAGATTGCATATCATATCTAAGATTGCA-ATCATATA
1 TAAGATTG-ATATCATATCTAAGATTGCATATCATATA
*
12800149 TAAGATTG-TATCATATCTAAGATTGCATATCATATC
1 TAAGATTGATATCATATCTAAGATTGCATATCATATA
12800185 TAAGATTGCATATCAT
1 TAAGATTG-ATATCAT
12800201 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.40
36 15 0.31
37 8 0.17
38 6 0.12
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.37
Consensus pattern (37 bp):
TAAGATTGATATCATATCTAAGATTGCATATCATATA
Found at i:12810007 original size:35 final size:35
Alignment explanation
Indices: 12809968--12810132 Score: 179
Period size: 35 Copynumber: 4.7 Consensus size: 35
12809958 TCCATGGAAA
* * *
12809968 AGTTGTGAAACGTAAGTATGGTATCATCCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCTATACTG
* *
12810003 AGTTGTGAAACGTAGGTATGGTATTAACTGTACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCTATACTG
*
12810038 AGTTGTGAAATGTAGGTATGGTATTATCTATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCTATACTG
** ** * *
12810073 AGTTAAGAAACGTAGGTATGACATT-TCCCATACCG
1 AGTTGTGAAACGTAGGTATGGTATTAT-CTATACTG
* * *
12810108 AGTTGTGAAATGCAGGTATTGTATT
1 AGTTGTGAAACGTAGGTATGGTATT
12810133 TCAATGAGGA
Statistics
Matches: 107, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
34 1 0.01
35 106 0.99
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (35 bp):
AGTTGTGAAACGTAGGTATGGTATTATCTATACTG
Found at i:12817391 original size:35 final size:35
Alignment explanation
Indices: 12817352--12817516 Score: 233
Period size: 35 Copynumber: 4.7 Consensus size: 35
12817342 TCCATGACAA
*
12817352 AGTTGTGAAACGTAGGTATGGTATCATCCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
*
12817387 AGTTGTGAAACGTAGGTATGGTATTAACCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
*
12817422 AGTTGTGAAACATAGGTATGGTATTATCCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
** ** *
12817457 AGTTAAGAAACGTAGGTATGACATT-TCCCATACCG
1 AGTTGTGAAACGTAGGTATGGTATTAT-CCATACTG
*
12817492 AGTTGTGAAATGTAGGTATGGTATT
1 AGTTGTGAAACGTAGGTATGGTATT
12817517 TCAATGAGGA
Statistics
Matches: 114, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
34 1 0.01
35 113 0.99
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (35 bp):
AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
Found at i:12820712 original size:31 final size:31
Alignment explanation
Indices: 12820663--12820722 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
12820653 TTGATCACTA
* *
12820663 AACTTTTAGGGCGTTTTCATTTTGGTCACCC
1 AACTTCTAGGGCGCTTTCATTTTGGTCACCC
*
12820694 AACTTCTAGGTCGCTTTCATTTTGGTCAC
1 AACTTCTAGGGCGCTTTCATTTTGGTCAC
12820723 TGGAAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.42
Consensus pattern (31 bp):
AACTTCTAGGGCGCTTTCATTTTGGTCACCC
Found at i:12822834 original size:184 final size:184
Alignment explanation
Indices: 12822598--12822944 Score: 534
Period size: 184 Copynumber: 1.9 Consensus size: 184
12822588 AATTAAACGC
* * * *
12822598 ATTATTAATATATACATTTATAATTGAAGGAAGTAATAAAGTATGCATAATAAACTTAAAATGTA
1 ATTATTAATATATACATATACAATT-AAGGAAGTAATAAAGTATACATAATAAAATTAAAATGTA
* * * * *
12822663 TAAAAATATTAAAATTAAATTTTAGCTAAATGATAAATTAAAGGTTTTACTAACGTAATTGGTTT
65 TAAAAATATCAAAATAAAATTTTAACTAAATGATAAATTAAAGGTTTTACTAACGCAATTAGTTT
12822728 AGGTTCAAATCTTATCATATACATATTTTTATTTTTTTAAATAAAACCAATAAAA
130 AGGTTCAAATCTTATCATATACATATTTTTATTTTTTTAAATAAAACCAATAAAA
* *
12822783 ATTATTAATATATACATATACAGTT-AGGAAAGTAATAAAGTATATATAATAAAATTAAAATGTA
1 ATTATTAATATATACATATACAATTAAGG-AAGTAATAAAGTATACATAATAAAATTAAAATGTA
* * **
12822847 TAAAAATGTCAAAATAAAATTTTAACTAAATGATAAATTAAAGGTTTTATTAGTGCAATTAGTTT
65 TAAAAATATCAAAATAAAATTTTAACTAAATGATAAATTAAAGGTTTTACTAACGCAATTAGTTT
12822912 AGGTTCAAATCTTATCATATACATATTTTTATT
130 AGGTTCAAATCTTATCATATACATATTTTTATT
12822945 GATTTTTTTA
Statistics
Matches: 146, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
183 3 0.02
184 121 0.83
185 22 0.15
ACGTcount: A:0.46, C:0.06, G:0.09, T:0.39
Consensus pattern (184 bp):
ATTATTAATATATACATATACAATTAAGGAAGTAATAAAGTATACATAATAAAATTAAAATGTAT
AAAAATATCAAAATAAAATTTTAACTAAATGATAAATTAAAGGTTTTACTAACGCAATTAGTTTA
GGTTCAAATCTTATCATATACATATTTTTATTTTTTTAAATAAAACCAATAAAA
Found at i:12825029 original size:14 final size:15
Alignment explanation
Indices: 12825010--12825038 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
12825000 ATTTTATTTT
12825010 TTTAAAATT-TAAAA
1 TTTAAAATTATAAAA
12825024 TTTAAAATTATAAAA
1 TTTAAAATTATAAAA
12825039 AAATGTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TTTAAAATTATAAAA
Found at i:12831581 original size:25 final size:27
Alignment explanation
Indices: 12831536--12831672 Score: 70
Period size: 28 Copynumber: 5.1 Consensus size: 27
12831526 AATTTAACCC
12831536 TATATATTTATTTCTATTATTATTATA
1 TATATATTTATTTCTATTATTATTATA
* * * *
12831563 TATATAATTTTTTTATATTGTTATT-TG
1 TATAT-ATTTATTTCTATTATTATTATA
* ** * *
12831590 T-TTTATTT-TTAATCTTATTTTTATA
1 TATATATTTATTTCTATTATTATTATA
* * *
12831615 TTATATATTATATATTATATAATTATTTTA
1 -TATATATT-TAT-TTCTATTATTATTATA
*
12831645 T-TATATATTATTGCTA-T-TTATTATA
1 TATATAT-TTATTTCTATTATTATTATA
12831670 TAT
1 TAT
12831673 TACTTTTCAC
Statistics
Matches: 81, Mismatches: 20, Indels: 19
0.68 0.17 0.16
Matches are distributed among these distances:
24 10 0.12
25 13 0.16
26 4 0.05
27 15 0.19
28 25 0.31
29 3 0.04
30 11 0.14
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (27 bp):
TATATATTTATTTCTATTATTATTATA
Found at i:12831623 original size:7 final size:7
Alignment explanation
Indices: 12831611--12831674 Score: 67
Period size: 7 Copynumber: 9.0 Consensus size: 7
12831601 ATCTTATTTT
12831611 TATATTA
1 TATATTA
12831618 TATATTA
1 TATATTA
12831625 TATATTA
1 TATATTA
12831632 TATAATTA
1 TAT-ATTA
*
12831640 TTTTATTA
1 -TATATTA
12831648 TATATTA
1 TATATTA
**
12831655 T-TGCTA
1 TATATTA
*
12831661 TTTATTA
1 TATATTA
12831668 TATATTA
1 TATATTA
12831675 CTTTTCACAA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
6 4 0.09
7 33 0.70
8 8 0.17
9 2 0.04
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (7 bp):
TATATTA
Found at i:12831811 original size:23 final size:23
Alignment explanation
Indices: 12831736--12831814 Score: 65
Period size: 23 Copynumber: 3.3 Consensus size: 23
12831726 ATTTTACTTG
12831736 TATTATATATTTATTAATTATTTTA
1 TATTATATA-TTA-TAATTATTTTA
*
12831761 TA-TAT-TA-TAAACATATATACTTTCA
1 TATTATATATTATA-AT-TAT--TTT-A
12831786 TATTATATATTATAATTATTTTA
1 TATTATATATTATAATTATTTTA
12831809 TATTAT
1 TATTAT
12831815 GTCATTTTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 18
0.69 0.03 0.28
Matches are distributed among these distances:
20 1 0.02
21 4 0.09
22 3 0.07
23 9 0.20
24 9 0.20
25 5 0.11
26 6 0.14
27 4 0.09
28 3 0.07
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (23 bp):
TATTATATATTATAATTATTTTA
Found at i:12831852 original size:20 final size:19
Alignment explanation
Indices: 12831807--12831854 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 19
12831797 ATAATTATTT
12831807 TATATTATGTCATTTTTTA
1 TATATTATGTCATTTTTTA
*
12831826 TACTATTATGT-TTTTTATCTA
1 TA-TATTATGTCATTTT-T-TA
12831847 TATATTAT
1 TATATTAT
12831855 TATTATTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 6 0.24
20 15 0.60
21 4 0.16
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.62
Consensus pattern (19 bp):
TATATTATGTCATTTTTTA
Found at i:12832283 original size:24 final size:26
Alignment explanation
Indices: 12832235--12832283 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
12832225 GCTCACTTAA
* *
12832235 TTTTATATTTATATGTATATTAATCC
1 TTTTATATGTATATGTATATAAATCC
12832261 TTTTATATGT-TAT-TATATAAATC
1 TTTTATATGTATATGTATATAAATC
12832284 ATTAGGTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 9 0.43
25 3 0.14
26 9 0.43
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (26 bp):
TTTTATATGTATATGTATATAAATCC
Found at i:12837307 original size:43 final size:43
Alignment explanation
Indices: 12837251--12837481 Score: 372
Period size: 43 Copynumber: 5.3 Consensus size: 43
12837241 TTTATTTGAA
* *
12837251 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTAGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
* * *
12837294 AAAAACGCTGCTAAAGGTCAAGGCTTTTAGTGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
12837337 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGTGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
12837380 AAAAGCGCTGCTAAAGGTCAAGGCTTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGC-TTTTAGCGGCGTTTGTGGG
*
12837424 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTAGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
12837467 AAAAGCGTCGCTAAA
1 AAAAGCGCCGCTAAA
12837482 AACCTTGACC
Statistics
Matches: 175, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
43 134 0.77
44 41 0.23
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
Found at i:12837455 original size:87 final size:86
Alignment explanation
Indices: 12837251--12837481 Score: 392
Period size: 87 Copynumber: 2.7 Consensus size: 86
12837241 TTTATTTGAA
* *
12837251 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTAGGAAAAACGCTGCTAAAGGTCAAG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTAGGAAAAGCGCTGCTAAAGGTCAAG
*
12837316 GCTTTTAGTGGCGTTTGTGGG
66 GCTTTTAGCGGCGTTTGTGGG
* *
12837337 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGTGTTTGTGGGAAAAGCGCTGCTAAAGGTCAAG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTAGGAAAAGCGCTGCTAAAGGTCAAG
12837402 GCTTTTTAGCGGCGTTTGTGGG
66 GC-TTTTAGCGGCGTTTGTGGG
12837424 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTAGGAAAAGCG-TCGCTAAA
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTAGGAAAAGCGCT-GCTAAA
12837482 AACCTTGACC
Statistics
Matches: 136, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
86 64 0.47
87 72 0.53
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (86 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTAGGAAAAGCGCTGCTAAAGGTCAAG
GCTTTTAGCGGCGTTTGTGGG
Found at i:12837523 original size:130 final size:128
Alignment explanation
Indices: 12837252--12837501 Score: 347
Period size: 130 Copynumber: 1.9 Consensus size: 128
12837242 TTATTTGAAA
*
12837252 AAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTAGGAAAAACGCTGCTAAAGGTCAAGG
1 AAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTAGGAAAAACGCCGCTAAAGGTCAAGG
* * *** * * *
12837317 CTTTTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGTGTTTGTGGG
66 CTTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAACCAAGACCTTTAGCGGCGTTTGTGGG
* * *
12837380 AAAAGCGCTGCTAAAGGTCAAGGCTTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAA
1 AAAA-CGCCGCTAAAGGTCAAGGC-TTTTAGCGGCGTTTGTAGGAAAAACGCCGCTAAAGGTCAA
* **
12837445 GGCTTTTAGCGGCGTTTGTAGGAAAAGCGTCGCTAAAAACCTTGACCTTTAGCGGCG
64 GGCTTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAACCAAGACCTTTAGCGGCG
12837502 CTTTTTTTAC
Statistics
Matches: 105, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
128 4 0.04
129 18 0.17
130 83 0.79
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.25
Consensus pattern (128 bp):
AAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTAGGAAAAACGCCGCTAAAGGTCAAGG
CTTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAACCAAGACCTTTAGCGGCGTTTGTGGG
Found at i:12843535 original size:9 final size:9
Alignment explanation
Indices: 12843519--12843598 Score: 79
Period size: 9 Copynumber: 8.6 Consensus size: 9
12843509 ATGTATTAGT
12843519 TAAGTTATG
1 TAAGTTATG
*
12843528 TGAGTTATG
1 TAAGTTATG
12843537 TAAGTTGTTATG
1 TAA---GTTATG
*
12843549 TAAATTATG
1 TAAGTTATG
*
12843558 TAAGTTATA
1 TAAGTTATG
*
12843567 TGAGTTATG
1 TAAGTTATG
12843576 TAAGTTATG
1 TAAGTTATG
* *
12843585 TAATTTATT
1 TAAGTTATG
12843594 TAAGT
1 TAAGT
12843599 AATGATCAAT
Statistics
Matches: 57, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
9 48 0.84
12 9 0.16
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:12843548 original size:21 final size:21
Alignment explanation
Indices: 12843522--12843581 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
12843512 TATTAGTTAA
12843522 GTTATGTGAGTTATGTAAGTT
1 GTTATGTGAGTTATGTAAGTT
* *
12843543 GTTATGTAAATTATGTAA---
1 GTTATGTGAGTTATGTAAGTT
*
12843561 GTTATATGAGTTATGTAAGTT
1 GTTATGTGAGTTATGTAAGTT
12843582 ATGTAATTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
18 15 0.48
21 16 0.52
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (21 bp):
GTTATGTGAGTTATGTAAGTT
Found at i:12844277 original size:241 final size:241
Alignment explanation
Indices: 12843718--12845114 Score: 2681
Period size: 241 Copynumber: 5.8 Consensus size: 241
12843708 TGAATATAGT
12843718 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
* *
12843783 TCGATATAAGGCAACCCATCAGGTTTCCAGCCTATATACTTTAAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
12843848 AGGTTGGAGAGAAGGTCAGCTATTG-TGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
131 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
12843912 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT-TTG
196 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTG
12843957 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
12844022 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
12844087 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
131 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
12844152 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTG
196 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTG
12844198 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
12844263 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
*
12844328 AGGTTGTAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
131 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
12844393 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTG
196 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTG
*
12844439 AATTTTTTAAGATTCATCATACGTGGTGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
12844504 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
* *
12844569 AGGTTGTAGAGAAGGCCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
131 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
12844634 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTG
196 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTG
*
12844680 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCTATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
12844745 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
12844810 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
131 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
*
12844875 ATTCAATAGTAAATGAGCTTGATAGAACTTTTTTCAAGTCTTCTTG
196 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTG
*
12844921 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTATAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
12844986 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
* *
12845051 AGGTTAGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAATCTACATGGTAATAAA
131 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAA
12845115 ATTAATTCAT
Statistics
Matches: 1142, Mismatches: 14, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
239 153 0.13
240 81 0.07
241 908 0.80
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (241 bp):
AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTCTTG
Found at i:12845263 original size:23 final size:23
Alignment explanation
Indices: 12845237--12845286 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
12845227 GTTCAAGTTT
12845237 ATTTAAAGGGCTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
12845260 ATTTAAAGGGCTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
12845283 ATTT
1 ATTT
12845287 GATTAATGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (23 bp):
ATTTAAAGGGCTGCAATTCATAC
Found at i:12847798 original size:14 final size:15
Alignment explanation
Indices: 12847774--12847803 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
12847764 TACAAACTTC
12847774 AGAATTTATGTATTT
1 AGAATTTATGTATTT
12847789 AGAA-TTATGTATTT
1 AGAATTTATGTATTT
12847803 A
1 A
12847804 TATAAACACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (15 bp):
AGAATTTATGTATTT
Found at i:12849539 original size:43 final size:45
Alignment explanation
Indices: 12849477--12849566 Score: 112
Period size: 43 Copynumber: 2.0 Consensus size: 45
12849467 GATAACAAAC
* * *
12849477 CCGGCCCATACCATTAACTTAATATATA-T-ACTATACCATTGAA
1 CCGGCCCAAACCATAAACTTAAAATATATTAACTATACCATTGAA
* * *
12849520 CCGGCCTAAACCATAAACTTAAAATATATTAATTCTACCATTGAA
1 CCGGCCCAAACCATAAACTTAAAATATATTAACTATACCATTGAA
12849565 CC
1 CC
12849567 CTAAACCATA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 24 0.62
44 1 0.03
45 14 0.36
ACGTcount: A:0.39, C:0.26, G:0.07, T:0.29
Consensus pattern (45 bp):
CCGGCCCAAACCATAAACTTAAAATATATTAACTATACCATTGAA
Found at i:12849814 original size:21 final size:22
Alignment explanation
Indices: 12849776--12849822 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
12849766 TGTTTTATGT
* *
12849776 TTTAAAATTTAGGGTTT-AGGG
1 TTTAAAATTTAAGATTTAAGGG
*
12849797 TTTAATATTTAAGATTTAAGGG
1 TTTAAAATTTAAGATTTAAGGG
12849819 TTTA
1 TTTA
12849823 CAGAAAGCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (22 bp):
TTTAAAATTTAAGATTTAAGGG
Found at i:12850158 original size:41 final size:40
Alignment explanation
Indices: 12850113--12850380 Score: 247
Period size: 41 Copynumber: 6.6 Consensus size: 40
12850103 AACTTTTTGC
*
12850113 GGCGTTTGGACCAAAAACGCCGCTATTAATCAGTTTTTAGT
1 GGCGTTTGGA-CAAAAACGCCGCTATTGATCAGTTTTTAGT
* * * * *
12850154 GGCGTTTTGGATAAAAACGCCACAATTGATTAGTTTTTTGT
1 GGCG-TTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
* * *
12850195 GGCGTTTGGGACAAAAACGCCGCAATTGATAAGTTTTTAGC
1 GGCGTTT-GGACAAAAACGCCGCTATTGATCAGTTTTTAGT
** *
12850236 GGCGTTTGAGATTAAAACGCCGCTATTGATCAGCTTTTAGT
1 GGCGTTTG-GACAAAAACGCCGCTATTGATCAGTTTTTAGT
*
12850277 GGCGTTTTG-CGAAAAACGCCGCTATTGA-CTAGTTTTTAGT
1 GGCGTTTGGAC-AAAAACGCCGCTATTGATC-AGTTTTTAGT
* * * * * * * *
12850317 GGCGTTTTTGCCAAAAATGCCGCTATAGTTTAGCTTTTATT
1 GGCG-TTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
12850358 GGCGTTTCGGAC--AAACGCCGCTA
1 GGCGTTT-GGACAAAAACGCCGCTA
12850381 ATGTATATTA
Statistics
Matches: 188, Mismatches: 30, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
39 11 0.06
40 37 0.20
41 133 0.71
42 7 0.04
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (40 bp):
GGCGTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
Found at i:12850681 original size:49 final size:52
Alignment explanation
Indices: 12850604--12850714 Score: 165
Period size: 49 Copynumber: 2.2 Consensus size: 52
12850594 TAACCCTATA
*
12850604 ATTAGATGAAATAAGATCACAAACCTTATGAATGCA-G-T-TGAATGATTTT
1 ATTAAATGAAATAAGATCACAAACCTTATGAATGCATGATGTGAATGATTTT
* *
12850653 ATTAAATGAAATAAGATGACAAACCTTATTAATGCATGCATGTGAATGATTTT
1 ATTAAATGAAATAAGATCACAAACCTTATGAATGCATG-ATGTGAATGATTTT
12850706 ATTAAATGA
1 ATTAAATGA
12850715 TTTATTTATT
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
49 33 0.60
50 1 0.02
52 1 0.02
53 20 0.36
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.33
Consensus pattern (52 bp):
ATTAAATGAAATAAGATCACAAACCTTATGAATGCATGATGTGAATGATTTT
Found at i:12850859 original size:7 final size:7
Alignment explanation
Indices: 12850847--12850895 Score: 53
Period size: 7 Copynumber: 6.7 Consensus size: 7
12850837 AGGGTGTTAT
12850847 ATATATA
1 ATATATA
12850854 ATATATA
1 ATATATA
12850861 ATATATA
1 ATATATA
*
12850868 AAATTATA
1 ATA-TATA
*
12850876 TTAATATA
1 AT-ATATA
*
12850884 ATATATT
1 ATATATA
12850891 ATATA
1 ATATA
12850896 ATTAGAAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
7 25 0.71
8 9 0.26
9 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
ATATATA
Found at i:12852812 original size:23 final size:24
Alignment explanation
Indices: 12852786--12852842 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 24
12852776 TTTACACTAT
*
12852786 TTTTTTATTA-AATTCATATTTAA
1 TTTTTTATTATAAATCATATTTAA
** *
12852809 TTTTTT-TTATAAATGGTATTTTA
1 TTTTTTATTATAAATCATATTTAA
12852832 TTTTTTATTAT
1 TTTTTTATTAT
12852843 TTATTTTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 3 0.11
23 21 0.75
24 4 0.14
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.67
Consensus pattern (24 bp):
TTTTTTATTATAAATCATATTTAA
Found at i:12852821 original size:24 final size:28
Alignment explanation
Indices: 12852767--12852822 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
12852757 CTTAACCCTC
12852767 AAATTAATATTTACACTATTTTTTTATT
1 AAATTAATATTTACACTATTTTTTTATT
*
12852795 AAATTCATATTTA-A-T-TTTTTTTA-T
1 AAATTAATATTTACACTATTTTTTTATT
12852819 AAAT
1 AAAT
12852823 GGTATTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 5 0.19
25 8 0.30
26 1 0.04
27 1 0.04
28 12 0.44
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (28 bp):
AAATTAATATTTACACTATTTTTTTATT
Found at i:12858659 original size:43 final size:44
Alignment explanation
Indices: 12858612--12858776 Score: 160
Period size: 43 Copynumber: 3.9 Consensus size: 44
12858602 GTTATTGAGT
*
12858612 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTAT-
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTATA
* * * * * *
12858655 TGTGATTGCGTGTAAGACCATGTCTGAGATATTGGCATCATATA
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTATA
* ** * *
12858699 T-TGATT-CGTGTAAGACTTTATCTGGGACAGTGGGATCG-ATA
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTATA
* * *
12858740 TGTGATAACATGTAAGACCATATTTGGGATA-TGGCAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCAT
12858777 TGTTCGAGCT
Statistics
Matches: 97, Mismatches: 22, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
41 4 0.04
42 33 0.34
43 59 0.61
44 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (44 bp):
TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTATA
Found at i:12863107 original size:25 final size:26
Alignment explanation
Indices: 12863013--12863119 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
12863003 TGATACAAAT
12863013 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
12863039 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
12863065 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
12863091 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
12863116 TGAT
1 TGAT
12863120 GGGAATTCAT
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
25 22 0.29
26 55 0.71
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:12864620 original size:26 final size:26
Alignment explanation
Indices: 12864591--12864643 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12864581 TTTACAGTTT
12864591 TACCCATAGTAGATAAATT-ACCGAAA
1 TACCCATAGT-GATAAATTGACCGAAA
* * *
12864617 TACCCCTAGTGTTAAATTGACCTAAA
1 TACCCATAGTGATAAATTGACCGAAA
12864643 T
1 T
12864644 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (26 bp):
TACCCATAGTGATAAATTGACCGAAA
Found at i:12867348 original size:11 final size:11
Alignment explanation
Indices: 12867332--12867356 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
12867322 TTATATATAC
12867332 TAATAAAATAA
1 TAATAAAATAA
12867343 TAATAAAATAA
1 TAATAAAATAA
12867354 TAA
1 TAA
12867357 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:12867677 original size:30 final size:31
Alignment explanation
Indices: 12867625--12867683 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
12867615 CACCTTTAAA
*
12867625 ATATTTTCACTATTATCCCTTCAAATTTTTC
1 ATATTTACACTATTATCCCTTCAAATTTTTC
12867656 ATATTTACACT-TTAAT-CCTTCAAATTTT
1 ATATTTACACTATT-ATCCCTTCAAATTTT
12867684 GAGTATTTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 14 0.54
31 12 0.46
ACGTcount: A:0.29, C:0.20, G:0.00, T:0.51
Consensus pattern (31 bp):
ATATTTACACTATTATCCCTTCAAATTTTTC
Found at i:12869101 original size:14 final size:14
Alignment explanation
Indices: 12869082--12869109 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
12869072 ATAATACTCC
12869082 TACATTAGGTGGAA
1 TACATTAGGTGGAA
12869096 TACATTAGGTGGAA
1 TACATTAGGTGGAA
12869110 AGAAATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.29
Consensus pattern (14 bp):
TACATTAGGTGGAA
Found at i:12875214 original size:27 final size:29
Alignment explanation
Indices: 12875183--12875257 Score: 82
Period size: 27 Copynumber: 2.6 Consensus size: 29
12875173 ACAAGTTTAA
*
12875183 GTACTAAATTGAACAA-AAAAA-GCTTAG
1 GTACTAAATTGAAAAAGAAAAACGCTTAG
*
12875210 GTACTAACTTGAAAAAGAAAAACGCTTAG
1 GTACTAAATTGAAAAAGAAAAACGCTTAG
* *
12875239 ATATTAAATTAGGAAAAAG
1 GTACTAAATT--GAAAAAG
12875258 TAGTTACCAT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
27 14 0.36
28 5 0.13
29 13 0.33
31 7 0.18
ACGTcount: A:0.52, C:0.09, G:0.16, T:0.23
Consensus pattern (29 bp):
GTACTAAATTGAAAAAGAAAAACGCTTAG
Found at i:12880376 original size:2 final size:2
Alignment explanation
Indices: 12880369--12880394 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
12880359 TACAAAATAA
12880369 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
12880395 TCTTGAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12881284 original size:89 final size:90
Alignment explanation
Indices: 12881114--12881337 Score: 273
Period size: 89 Copynumber: 2.5 Consensus size: 90
12881104 CTTAAGGGTA
* * *
12881114 CAAAAA-GCCCTCAAACTTTTTCAAAAAAAGTAATTAAGCCCCTA----TTTTTTTGCACTCATT
1 CAAAAAGGCCCTCAAACATTTTCAAAAAAA-CAATTAAGCCCCTACTTTTTTTTTTGCACTCAAT
*
12881174 TGAATATTTAAACTTTCAAAATGCAT
65 TGAATACTTAAACTTTCAAAATGCAT
*
12881200 CAAAAAGGCCCTCAAACCTTTT-AAAAAAACAATTAAGCCCCTACTTTTTTTTTTGCACTCAATT
1 CAAAAAGGCCCTCAAACATTTTCAAAAAAACAATTAAGCCCCTACTTTTTTTTTTGCACTCAATT
* **
12881264 GGATACTTGTACTTTCAAAATGCAT
66 GAATACTTAAACTTTCAAAATGCAT
* * * *
12881289 AAAAAAGACCCTCAAA-ATTTTCGAAAAAAGCAATTAAGCCCCTTCTTTT
1 CAAAAAGGCCCTCAAACATTTTC-AAAAAAACAATTAAGCCCCTACTTTT
12881338 ATTAAAAATT
Statistics
Matches: 119, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
85 13 0.11
86 13 0.11
87 14 0.12
88 4 0.03
89 51 0.43
90 24 0.20
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (90 bp):
CAAAAAGGCCCTCAAACATTTTCAAAAAAACAATTAAGCCCCTACTTTTTTTTTTGCACTCAATT
GAATACTTAAACTTTCAAAATGCAT
Found at i:12881850 original size:21 final size:21
Alignment explanation
Indices: 12881817--12881857 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
12881807 CTAAAATTTA
*
12881817 TTTTTTTAGTTTTT-ATAAAT
1 TTTTTTTAATTTTTAATAAAT
12881837 TTTTTTCTAATTTTTAATAAA
1 TTTTTT-TAATTTTTAATAAA
12881858 AGCAGAGGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 7 0.39
22 5 0.28
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (21 bp):
TTTTTTTAATTTTTAATAAAT
Found at i:12891847 original size:448 final size:448
Alignment explanation
Indices: 12891012--12892344 Score: 2639
Period size: 448 Copynumber: 3.0 Consensus size: 448
12891002 TCAAACATAA
12891012 CACAAACCAACCTATACATGCCATAGGTTAAAGTTCAACTTTTTATAAGTACCAAAAATAAACGA
1 CACAAACCAACCTATACATGCCATAGGTTAAAGTTCAACTTTTTATAAGTACCAAAAATAAACGA
12891077 TAGTGTGATAGACTTCGTTAACGATCCCTGAGCCCGTAACTATCTTCCAAAATCTATAAATTACA
66 TAGTGTGATAGACTTCGTTAACGATCCCTGAGCCCGTAACTATCTTCCAAAATCTATAAATTACA
12891142 AAATAAACATACTCACAGTAAGCTATCAAAGCTTAGTAAGTCATAAGCAAATAAAACATTTAATA
131 AAATAAACATACTCACAGTAAGCTATCAAAGCTTAGTAAGTCATAAGCAAATAAAACATTTAATA
12891207 GCATAATCAACTCAATTAACCAAACCAATTTATGCAATTATAATCACTTATAATTTCAAGCTTAT
196 GCATAATCAACTCAATTAACCAAACCAATTTATGCAATTATAATCACTTATAATTTCAAGCTTAT
12891272 AATTTTATATATAACATATACTTTCGTAAACAACTTAACATACCCAAATATACACTTGTATATAC
261 AATTTTATATATAACATATACTTTCGTAAACAACTTAACATACCCAAATATACACTTGTATATAC
12891337 ATTACTAATACATTCTCCAATTTCAAAGTCATGTTGGCATATATATCTGATTAGTCACGTGTATT
326 ATTACTAATACATTCTCCAATTTCAAAGTCATGTTGGCATATATATCTGATTAGTCACGTGTATT
12891402 CATTTAAACATACTCATAGATCAAGCTTTTAAATCACATACTTATACATGCCATAGGT
391 CATTTAAACATACTCATAGATCAAGCTTTTAAATCACATACTTATACATGCCATAGGT
12891460 CACAAACCAACCTATACATGCCATAGGTTAAAGTTCAACTTTTTATAAGTACCAAAAATAAACGA
1 CACAAACCAACCTATACATGCCATAGGTTAAAGTTCAACTTTTTATAAGTACCAAAAATAAACGA
12891525 TAGTGTGATAGACTTCGTTAACGATCCCTGAGCCCGTAACTATCTTCCAAAATCTATAAATTACA
66 TAGTGTGATAGACTTCGTTAACGATCCCTGAGCCCGTAACTATCTTCCAAAATCTATAAATTACA
12891590 AAATAAACATACTCACAGTAAGCTATCAAAGCTTAGTAAGTCATAAGCAAATAAAACATTTAATA
131 AAATAAACATACTCACAGTAAGCTATCAAAGCTTAGTAAGTCATAAGCAAATAAAACATTTAATA
*
12891655 GCATAATCAACTCAATTAACCAAACCAATTTATGCAATTATAATCACTTATAATTTGAAGCTTAT
196 GCATAATCAACTCAATTAACCAAACCAATTTATGCAATTATAATCACTTATAATTTCAAGCTTAT
12891720 AATTTTATATATAACATATACTTTCGTAAACAACTTAACATACCCAAATATACACTTGTATATAC
261 AATTTTATATATAACATATACTTTCGTAAACAACTTAACATACCCAAATATACACTTGTATATAC
12891785 ATTACTAATACATTCTCCAATTTCAAAGTCATGTTGGCATATATATCTGATTAGTCACGTGTATT
326 ATTACTAATACATTCTCCAATTTCAAAGTCATGTTGGCATATATATCTGATTAGTCACGTGTATT
12891850 CATTTAAACATACTCATAGATCAAGCTTTTAAATCACATACTTATACATGCCATAGGT
391 CATTTAAACATACTCATAGATCAAGCTTTTAAATCACATACTTATACATGCCATAGGT
12891908 CACAAACCAACCTATACATGCCATAGGTTAAAGTTCAACTTTTTATAAGTACCAAAAATAAACGA
1 CACAAACCAACCTATACATGCCATAGGTTAAAGTTCAACTTTTTATAAGTACCAAAAATAAACGA
*
12891973 TAGTGTGATAGACTTCGTTAACGATCCCTGAGCCCGTAACTATCTCCCAAAATCTATAAATTACA
66 TAGTGTGATAGACTTCGTTAACGATCCCTGAGCCCGTAACTATCTTCCAAAATCTATAAATTACA
12892038 AAATAAACATACTCACAGTAAGCTATCAAAGCTTAGTAAGTCATAAGCAAATAAAACATTTAATA
131 AAATAAACATACTCACAGTAAGCTATCAAAGCTTAGTAAGTCATAAGCAAATAAAACATTTAATA
*
12892103 GCATAATCAACTCAATTAACCAAACCAATTTATGCAATTATAATCACTTACAATTTCAAGCTTAT
196 GCATAATCAACTCAATTAACCAAACCAATTTATGCAATTATAATCACTTATAATTTCAAGCTTAT
12892168 AATTTTATATATAACATATACTTTCGTAAACAACTTAACATACCCAAATATACACTTGTATATAC
261 AATTTTATATATAACATATACTTTCGTAAACAACTTAACATACCCAAATATACACTTGTATATAC
12892233 ATTACTAATACATTCTCCAATTTCAAAGTCATGTTGGCATATATATCTGATTAGTCACGTGTATT
326 ATTACTAATACATTCTCCAATTTCAAAGTCATGTTGGCATATATATCTGATTAGTCACGTGTATT
12892298 CATTTAAACATACTCATAGATCAAGCTTTTAAATCACATACTTATAC
391 CATTTAAACATACTCATAGATCAAGCTTTTAAATCACATACTTATAC
12892345 CTATCATAAG
Statistics
Matches: 881, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
448 881 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (448 bp):
CACAAACCAACCTATACATGCCATAGGTTAAAGTTCAACTTTTTATAAGTACCAAAAATAAACGA
TAGTGTGATAGACTTCGTTAACGATCCCTGAGCCCGTAACTATCTTCCAAAATCTATAAATTACA
AAATAAACATACTCACAGTAAGCTATCAAAGCTTAGTAAGTCATAAGCAAATAAAACATTTAATA
GCATAATCAACTCAATTAACCAAACCAATTTATGCAATTATAATCACTTATAATTTCAAGCTTAT
AATTTTATATATAACATATACTTTCGTAAACAACTTAACATACCCAAATATACACTTGTATATAC
ATTACTAATACATTCTCCAATTTCAAAGTCATGTTGGCATATATATCTGATTAGTCACGTGTATT
CATTTAAACATACTCATAGATCAAGCTTTTAAATCACATACTTATACATGCCATAGGT
Found at i:12893726 original size:39 final size:39
Alignment explanation
Indices: 12893587--12893718 Score: 210
Period size: 39 Copynumber: 3.4 Consensus size: 39
12893577 ATCGTGATCT
** *
12893587 GAAGCCCGAAGTTTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
* *
12893626 GAAGCCCGAAGGCTAACTGAAGCACATAAGTACTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
12893665 GAAGCCTGAAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
12893704 GAAGCCCGAAGGCTA
1 GAAGCCCGAAGGCTA
12893719 GTTGAAGCTC
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 84 1.00
ACGTcount: A:0.38, C:0.21, G:0.26, T:0.15
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:12896767 original size:43 final size:43
Alignment explanation
Indices: 12896708--12897033 Score: 474
Period size: 43 Copynumber: 7.8 Consensus size: 43
12896698 TTTATTGGAA
* *
12896708 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCAGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
12896751 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTGTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
12896794 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGA
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
* *
12896837 AAAAGCGCCGCTATAGGTCAAGGCTTTTAGCGGCGTTTATGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
12896880 AAAAGCGCCGCTAAACGTC-A-------A--GGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
* *
12896913 AAAAGCGGCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGT
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
12896956 AAAAGCGCCGCTATAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
* *
12896999 AAAAGCGGCGCTAAACGTCAAGGCTTTTAGCGGCG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
12897034 CTTTTTTTAC
Statistics
Matches: 253, Mismatches: 20, Indels: 20
0.86 0.07 0.07
Matches are distributed among these distances:
33 28 0.11
34 1 0.00
35 1 0.00
41 1 0.00
42 1 0.00
43 221 0.87
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.23
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
Done.