Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 44 of 325
Found at i:13164238 original size:23 final size:22
Alignment explanation
Indices: 13164211--13164264 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
13164201 TGGATAACCT
13164211 TTTTTTAAAAAATATTTTTTCAA
1 TTTTTTAAAAAAT-TTTTTTCAA
*** *
13164234 TTTTTCTTTCAAATTTTTTTGAA
1 TTTTT-TAAAAAATTTTTTTCAA
13164257 TTTTTTAA
1 TTTTTTAA
13164265 GTAGTAATAA
Statistics
Matches: 24, Mismatches: 6, Indels: 3
0.73 0.18 0.09
Matches are distributed among these distances:
22 1 0.04
23 18 0.75
24 5 0.21
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.63
Consensus pattern (22 bp):
TTTTTTAAAAAATTTTTTTCAA
Found at i:13164868 original size:26 final size:26
Alignment explanation
Indices: 13164839--13164889 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
13164829 ATTACTAACA
13164839 TTAACAGAATAATGAGTATCATCTCG
1 TTAACAGAATAATGAGTATCATCTCG
13164865 TTAACAGAATAATGAGTATCATCTC
1 TTAACAGAATAATGAGTATCATCTC
13164890 ACTTCTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (26 bp):
TTAACAGAATAATGAGTATCATCTCG
Found at i:13166869 original size:21 final size:21
Alignment explanation
Indices: 13166822--13166872 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
13166812 AATGTAAAAA
13166822 TTAAATTAAAAACAAAAATAT
1 TTAAATTAAAAACAAAAATAT
*
13166843 TAAAATTAAAATTA-AAAAAT-T
1 TTAAATTAAAA--ACAAAAATAT
13166864 TTAAATTAA
1 TTAAATTAA
13166873 TAGAAATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 19 0.73
22 6 0.23
23 1 0.04
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
TTAAATTAAAAACAAAAATAT
Found at i:13169575 original size:26 final size:26
Alignment explanation
Indices: 13169519--13169575 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
13169509 CTTCTTGATA
*
13169519 GGCTCTTTGTGAGCTTCCCGATTAAT
1 GGCTCTTTGTGAACTTCCCGATTAAT
* *
13169545 AGCTCTTTGTGAACTT-CCTATTATAT
1 GGCTCTTTGTGAACTTCCCGATTA-AT
13169571 GGCTC
1 GGCTC
13169576 GAGAGAGGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.40
Consensus pattern (26 bp):
GGCTCTTTGTGAACTTCCCGATTAAT
Found at i:13170552 original size:19 final size:19
Alignment explanation
Indices: 13170528--13170606 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
13170518 AATCTTTAAG
13170528 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13170547 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13170566 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13170583 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
13170604 GAT
1 GAT
13170607 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:13170558 original size:36 final size:36
Alignment explanation
Indices: 13170518--13170605 Score: 119
Period size: 36 Copynumber: 2.4 Consensus size: 36
13170508 ATGGAAATAT
13170518 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGACAATCTTAGATATGATATGC
13170554 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG--ACAATCTTAGATATGATATGC
*
13170590 AATCTTGAAGATATGA
1 AATCTTTAAGATATGA
13170606 TCTTGTAATC
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 2 0.04
36 29 0.63
37 1 0.02
38 7 0.15
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (36 bp):
AATCTTTAAGATATGACAATCTTAGATATGATATGC
Found at i:13173497 original size:174 final size:176
Alignment explanation
Indices: 13173152--13173498 Score: 671
Period size: 174 Copynumber: 2.0 Consensus size: 176
13173142 GCATCTAATA
13173152 GCATCTCATCGCATCATTTGCATTCAAAATTATAAAAAGACTCTAATTAGTTAAAGTTATCAAAA
1 GCATCTCATCGCATCATTTGCATTCAAAATTATAAAAAGACTCTAATTAGTTAAAGTTATCAAAA
*
13173217 AGAGAAAGAAAAAGAGAGAGAGAGAGAGAAGAGGGTCACGGCTGAGTGAAAAAGAAGTTGAATGG
66 AGAGAAAGAAAAAGAGAGAGAGAGAGAGAAGAGGGTCACGGCTGAGTGAAAAAGAAGTTGAATGA
13173282 GAATTAACGACGTTCCCTTACATATCCCCGACTTTTGTGTCAGGTC
131 GAATTAACGACGTTCCCTTACATATCCCCGACTTTTGTGTCAGGTC
13173328 GCATCTCATCGCATCATTTGCATTCAAAATTATAAAAAGACTCTAATTAGTTAAAGTTATCAAAA
1 GCATCTCATCGCATCATTTGCATTCAAAATTATAAAAAGACTCTAATTAGTTAAAGTTATCAAAA
13173393 AGAGAAAG-AAAA-AGAGAGAGAGAGAGAAGAGGGTCACGGCTGAGTGAAAAAGAAGTTGAATGA
66 AGAGAAAGAAAAAGAGAGAGAGAGAGAGAAGAGGGTCACGGCTGAGTGAAAAAGAAGTTGAATGA
13173456 GAATTAACGACGTTCCCTTACATATCCCCGACTTTTGTGTCAG
131 GAATTAACGACGTTCCCTTACATATCCCCGACTTTTGTGTCAG
13173499 AAGGGATAGC
Statistics
Matches: 170, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
174 93 0.55
175 4 0.02
176 73 0.43
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (176 bp):
GCATCTCATCGCATCATTTGCATTCAAAATTATAAAAAGACTCTAATTAGTTAAAGTTATCAAAA
AGAGAAAGAAAAAGAGAGAGAGAGAGAGAAGAGGGTCACGGCTGAGTGAAAAAGAAGTTGAATGA
GAATTAACGACGTTCCCTTACATATCCCCGACTTTTGTGTCAGGTC
Found at i:13175981 original size:16 final size:16
Alignment explanation
Indices: 13175956--13176007 Score: 65
Period size: 15 Copynumber: 3.4 Consensus size: 16
13175946 CTTCTATTTC
13175956 AAAAAA-AAAAAGAGA
1 AAAAAATAAAAAGAGA
13175971 AAAAAATAAAAAGA-A
1 AAAAAATAAAAAGAGA
* *
13175986 AAAAGAGAAAAA-AGA
1 AAAAAATAAAAAGAGA
13176001 AAAAAAT
1 AAAAAAT
13176008 GGAGAGGCCA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 1 0.03
15 23 0.74
16 7 0.23
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.04
Consensus pattern (16 bp):
AAAAAATAAAAAGAGA
Found at i:13175987 original size:23 final size:22
Alignment explanation
Indices: 13175956--13176006 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
13175946 CTTCTATTTC
13175956 AAAAAAAAAAAGAGAAAAAAAT
1 AAAAAAAAAAAGAGAAAAAAAT
*
13175978 AAAAAGAAAAAAGAG-AAAAAAG
1 AAAAA-AAAAAAGAGAAAAAAAT
13176000 AAAAAAA
1 AAAAAAA
13176007 TGGAGAGGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 2 0.07
22 16 0.59
23 9 0.33
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (22 bp):
AAAAAAAAAAAGAGAAAAAAAT
Found at i:13177019 original size:44 final size:43
Alignment explanation
Indices: 13176962--13177659 Score: 494
Period size: 44 Copynumber: 15.9 Consensus size: 43
13176952 GATCCAAGAT
* * *
13176962 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-CA
* * *
13177006 GATTTGGCATCTCTATATTGGCAGGGAGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAG--ATA-CA
* * * ** * *
13177052 GATTTGGCTTTCACGTGT-TTACGTTGA-AGCAAATCTAAGAT---
1 GATTTGGC-ATCTC-TGTATT-GGCAGAGAGCAGATCGAAGATACA
* * *
13177093 GATTTAGCGTCTCTGTATTGGCAGAGAGCATATCGAAGATGACTA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-AC-A
* *
13177138 -ATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATA-CA
* * * ** * *
13177184 GATTTGGC-TTTCATGTGTTTATGTTGA-AGCAAATCTAAGAT---
1 GATTTGGCATCTC-TGT-ATT-GGCAGAGAGCAGATCGAAGATACA
* * * *
13177225 GATTTGGCATCTTTGTATTGGTAGAGAGTAGATCAAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
*
13177269 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* * * *
13177313 GATTTAGCATCTCTGTATTCAGCGGAGAGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATA-CA
* * ** * * *
13177360 GATTTGGC-TTTCATGTGTTTAC-GTTGAAACA-AGTCTAAGAT---
1 GATTTGGCATCTC-TGTATTGGCAG-AG-AGCAGA-TCGAAGATACA
13177401 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-CA
*
13177445 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
*
13177489 AATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* * *
13177533 GATTTGACATCTCTATATTGGCAGAGAGCAGATCGAAGATAATA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* * * *
13177577 GATTTGGCGTCTCTGTATTGGCAGAGCGCAGATCGAAAATAGAA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-CA
* * * * * *
13177621 GATTTGGCGTCTTTGTATTGTCAAAGAGCATATCTAAGA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGA
13177660 GAAGAACAAT
Statistics
Matches: 524, Mismatches: 88, Indels: 84
0.75 0.13 0.12
Matches are distributed among these distances:
39 10 0.02
40 40 0.08
41 34 0.06
42 6 0.01
43 1 0.00
44 299 0.57
45 41 0.08
46 23 0.04
47 61 0.12
48 9 0.02
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (43 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATACA
Found at i:13177284 original size:176 final size:175
Alignment explanation
Indices: 13177093--13177527 Score: 701
Period size: 176 Copynumber: 2.5 Consensus size: 175
13177083 AATCTAAGAT
* * * *
13177093 GATTTAGCGTCTCTGTATTGGCAGAGAGCATATCGAAGATGACTAATTTGGCATCTCTGTATTCG
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGAC-AATTTGGCATCTCTGTATTCG
* *
13177158 GCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTATGTTGAAGCAAATCTAAG
65 GCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAACAAATCTAAG
* * *
13177223 ATGATTTGGCATCTTTGTATTGGTAGAGAGTAGATCAAAGATAACA
130 ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATAACA
* *
13177269 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTAGCATCTCTGTATTCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACA-ATTTGGCATCTCTGTATTCG
*
13177334 GCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAACAAGTCTAAG
65 GCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAACAAATCTAAG
* *
13177399 ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
130 ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATAACA
13177445 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAAATTTGGCATCTCTGTATT-G
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGAC-AATTTGGCATCTCTGTATTCG
*
13177509 GCAGAGAGCAGATCGAAGA
65 GCGGAGAGCAGATCGAAGA
13177528 TAACAGATTT
Statistics
Matches: 240, Mismatches: 17, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
175 19 0.08
176 220 0.92
177 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (175 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAATTTGGCATCTCTGTATTCGG
CGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAACAAATCTAAGA
TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATAACA
Found at i:13177583 original size:176 final size:177
Alignment explanation
Indices: 13176963--13177711 Score: 590
Period size: 176 Copynumber: 4.2 Consensus size: 177
13176953 ATCCAAGATG
* * *
13176963 ATTTGGCGTCTCTGTATT-GTCAGG-GAGCAGATCGAAGATACCAGATTTGGCATCTC-TATATT
1 ATTTGGCATCTCTGTATTCGGC-GGAGAGCAGATCGAAGATAGCAGATTTGGC-TCTCATATATT
* * * * * ** * *
13177025 GGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT-TTACGTTGA-AGCAAATCT
64 GGCAGAGAGCAGATCGAAGAAATA--TGATTTGGC-ATCTC-TGTATT-GGCAGAGAGCAGATCG
* * * * *
13177088 AAGAT----GATTTAGCGTCTCTGTATTGGCAGAGAGCATATCGAAGATGACTA
124 AAGATAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAA
* * * *
13177138 ATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTT
1 ATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAG--ATAGCAGATTTGGCTCTCATAT-AT
* ** * * * * * *
13177203 TATGTTGA-AGCAAATCTAAG----ATGATTTGGCATCTTTGTATTGGTAGAGAGTAGATCAAAG
63 T-GGCAGAGAGCAGATCGAAGAAATATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAG
* *
13177263 ATAACAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAG
127 ATAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAA
* * * * * *
13177314 ATTTAGCATCTCTGTATTCAGCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTT
1 ATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAG--ATAGCAGATTTGGCTCTCATATATT
** * * *
13177379 TAC-GTTGA--A-A-C-AAGTCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAA
64 GGCAG-AGAGCAGATCGAAG--AAATATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAA
13177438 GATAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAA
126 GATAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAA
* * *
13177490 ATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAGATAACAGATTTGACATCTC-TATATTG
1 ATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAGATAGCAGATTTGGC-TCTCATATATTG
* * *
13177553 GCAGAGAGCAGATCGAAGATAATA-GATTTGGCGTCTCTGTATTGGCAGAGCGCAGATCGAAAAT
65 GCAGAGAGCAGATCGAAGA-AATATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT
* * * * * * *
13177617 AGAAGATTTGGCGTCTTTGTATTGTCAAAGAGCATATCTAAGAGAAGAACAATA
129 AGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC-AA-AGATG-AC-A-A
* * *
13177671 GATTTGGCATCTCCGTATTCGACGGAGAGCAGATCCAAGAT
1 -ATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAGAT
13177712 GATTTGGCAT
Statistics
Matches: 471, Mismatches: 67, Indels: 64
0.78 0.11 0.11
Matches are distributed among these distances:
170 3 0.01
171 8 0.02
172 16 0.03
173 29 0.06
174 5 0.01
175 41 0.09
176 286 0.61
177 9 0.02
178 21 0.04
179 14 0.03
180 3 0.01
181 1 0.00
182 17 0.04
183 18 0.04
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (177 bp):
ATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCTCTCATATATTGG
CAGAGAGCAGATCGAAGAAATATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
CAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAA
Found at i:13177854 original size:44 final size:44
Alignment explanation
Indices: 13177814--13177990 Score: 146
Period size: 44 Copynumber: 4.0 Consensus size: 44
13177804 CATGGCATTT
*
13177814 CTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGGCATCC
1 CTGTGTTTACAGGGAACAGA-TTGAAGATAGCAGATTTGGCATCC
* * * *
13177858 CTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTC
1 CTGTGTTTACAGGGAACAGATTGAAG--ATAGCAGATTTGGCATCC
* * * **
13177904 CTATGCTTACAGCGAAGCAGATTGAAGATTTCAGCA--TGGCATCC
1 CTGTGTTTACAGGGAA-CAGATTGAAGATAGCAG-ATTTGGCATCC
* ** *
13177948 CTGTGTTTATAGAAAACA-AGTTGAAGATAGTAGATTTGGCATC
1 CTGTGTTTACAGGGAACAGA-TTGAAGATAGCAGATTTGGCATC
13177991 TCCATATTCG
Statistics
Matches: 104, Mismatches: 21, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
42 2 0.02
43 12 0.12
44 46 0.44
45 6 0.06
46 29 0.28
47 9 0.09
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (44 bp):
CTGTGTTTACAGGGAACAGATTGAAGATAGCAGATTTGGCATCC
Found at i:13177914 original size:46 final size:46
Alignment explanation
Indices: 13177719--13177931 Score: 152
Period size: 44 Copynumber: 4.7 Consensus size: 46
13177709 GATGATTTGG
* *
13177719 CATTCCTATGTTTACAGGGAACAGATCGAAGACATAGTAGATCTGA
1 CATTCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGA
* ** * * *** *
13177765 CATTCCTGTGCTTACAACGAAGCAAATC-AA-AGATTTTA-A-CATGG
1 CATTCCTGTGTTTACAGGGAA-CAGATCGAAGACATAGCAGATC-TGA
* * * * *
13177809 CATTTCTGTGTTTATAGGGAACA-AGTTGAAG--ATAGCAGATTTGG
1 CATTCCTGTGTTTACAGGGAACAGA-TCGAAGACATAGCAGATCTGA
*
13177853 CATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGA
1 CATTCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGA
* * * *
13177899 CATTCCTATGCTTACAGCGAAGCAGATTGAAGA
1 CATTCCTGTGTTTACAGGGAA-CAGATCGAAGA
13177932 TTTCAGCATG
Statistics
Matches: 126, Mismatches: 30, Indels: 21
0.71 0.17 0.12
Matches are distributed among these distances:
42 1 0.01
43 7 0.06
44 50 0.40
45 6 0.05
46 47 0.37
47 15 0.12
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (46 bp):
CATTCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGA
Found at i:13177952 original size:134 final size:134
Alignment explanation
Indices: 13177712--13178031 Score: 426
Period size: 134 Copynumber: 2.4 Consensus size: 134
13177702 GATCCAAGAT
* * *
13177712 GATTTGGCATTCCTATGTTTACAGGGAACAGATCGAAGACATAGTAGATCTGACATTCCTGTGCT
1 GATTTGGCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATGCT
* ** **
13177777 TACAACGAAGCAAATCAAAGATTTTAACATGGCATTTCTGTGTTTATAGGGAACAAGTTGAAGAT
66 TACAACGAAGCAAATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGAAAACAAGTTGAAGAT
13177842 AGCA
131 AGCA
*
13177846 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATGCT
1 GATTTGGCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATGCT
* * ** *
13177911 TACAGCGAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGTTTATAGAAAACAAGTTGAAGAT
66 TACAACGAAGCAAATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGAAAACAAGTTGAAGAT
*
13177976 AGTA
131 AGCA
** * ** *
13177980 GATTTGGCATCTCCATAT-TCGACAGGGAGCAGATTAAAGACATAGTAGATCT
1 GATTTGGCATC-CC-TATGTTTACAGGGAACAGATCGAAGACATAGCAGATCT
13178032 AACCTTCATG
Statistics
Matches: 162, Mismatches: 22, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
134 130 0.80
135 30 0.19
136 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.28
Consensus pattern (134 bp):
GATTTGGCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATGCT
TACAACGAAGCAAATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGAAAACAAGTTGAAGAT
AGCA
Found at i:13178134 original size:45 final size:44
Alignment explanation
Indices: 13178064--13178191 Score: 177
Period size: 45 Copynumber: 2.9 Consensus size: 44
13178054 AGTAGATCCA
* *
13178064 AGATGACAGATTTGGCATCTTTGTATTAGACGGGGAGCAAATCGG
1 AGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAAT-GG
* *
13178109 AGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCATATTG
1 AGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATGG
* *
13178153 A-AAAAGCAAATTTGGCATCTCTGTATTAGACGGGGAGCA
1 AGATAA-CAGATTTGGCATCTCTGTATTAGACGGGGAGCA
13178192 GATCAAAGAT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
43 3 0.04
44 34 0.45
45 39 0.51
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (44 bp):
AGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATGG
Found at i:13178179 original size:44 final size:45
Alignment explanation
Indices: 13178073--13178191 Score: 170
Period size: 44 Copynumber: 2.7 Consensus size: 45
13178063 AAGATGACAG
* * *
13178073 ATTTGGCATCTTTGTATTAGACGGGGAGCAAATCGGAGATAACAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGAAAACAA
* *
13178118 ATTTGGCATCTCTGTATTAGACGGGGAGCATAT-TGA-AAAAGCAA
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGAAAA-CAA
13178162 ATTTGGCATCTCTGTATTAGACGGGGAGCA
1 ATTTGGCATCTCTGTATTAGACGGGGAGCA
13178192 GATCAAAGAT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
43 3 0.04
44 34 0.50
45 31 0.46
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (45 bp):
ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGAAAACAA
Found at i:13178589 original size:19 final size:19
Alignment explanation
Indices: 13178561--13178677 Score: 175
Period size: 19 Copynumber: 6.2 Consensus size: 19
13178551 AATCTTTAAG
*
13178561 GATATGCAATTTTAGATAT
1 GATATGCAATCTTAGATAT
*
13178580 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13178599 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13178618 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
13178635 GATATGCAATCTTAAATAT
1 GATATGCAATCTTAGATAT
13178654 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
13178675 GAT
1 GAT
13178678 CTTGTAATCT
Statistics
Matches: 89, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
17 17 0.19
19 64 0.72
21 8 0.09
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:13178591 original size:36 final size:38
Alignment explanation
Indices: 13178561--13178677 Score: 175
Period size: 36 Copynumber: 3.1 Consensus size: 38
13178551 AATCTTTAAG
*
13178561 GATATGCAATTTTAGATATGATATACAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATACAATCTTAGATAT
13178599 GATATGCAATCTTAGATATG--ATACAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATACAATCTTAGATAT
* *
13178635 GATATGCAATCTTAAATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATATACAATCTT--AGATAT
13178675 GAT
1 GAT
13178678 CTTGTAATCT
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
36 35 0.49
38 28 0.39
40 9 0.12
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATACAATCTTAGATAT
Found at i:13178631 original size:55 final size:56
Alignment explanation
Indices: 13178567--13178677 Score: 179
Period size: 55 Copynumber: 2.0 Consensus size: 56
13178557 TAAGGATATG
* *
13178567 CAATTTTAGATATGATATACAATCTTAGATATGATATGCAATCTT-AGATATGATA
1 CAATCTTAGATATGATATACAATCTTAAATATGATATGCAATCTTAAGATATGATA
*
13178622 CAATCTTAGATATGATATGCAATCTTAAATATGATATGCAATCTTGAAGATATGAT
1 CAATCTTAGATATGATATACAATCTTAAATATGATATGCAATCTT-AAGATATGAT
13178678 CTTGTAATCT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
55 42 0.82
57 9 0.18
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.37
Consensus pattern (56 bp):
CAATCTTAGATATGATATACAATCTTAAATATGATATGCAATCTTAAGATATGATA
Found at i:13181581 original size:32 final size:32
Alignment explanation
Indices: 13181545--13181612 Score: 84
Period size: 32 Copynumber: 2.1 Consensus size: 32
13181535 ATGAATAATC
* *
13181545 ATATCTTTAAAAGT-GACATAACTATTCAATTA
1 ATATCTTTAAAA-TAAACATAACTATTCAAGTA
* *
13181577 ATATCTTTTAAATAAATATAACTATTCAAGTA
1 ATATCTTTAAAATAAACATAACTATTCAAGTA
13181609 ATAT
1 ATAT
13181613 TGCTTGAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 1 0.03
32 30 0.97
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (32 bp):
ATATCTTTAAAATAAACATAACTATTCAAGTA
Found at i:13184551 original size:28 final size:28
Alignment explanation
Indices: 13184520--13184589 Score: 72
Period size: 28 Copynumber: 2.5 Consensus size: 28
13184510 AAATTTTAAA
*
13184520 AAAAATTATAAAATTTATTTTTAAAA-T-T
1 AAAAATTATAAAA-TTA-TTTAAAAAGTAT
*
13184548 AAAAATCATTAAAATTATTTAAAAAGTAT
1 AAAAATTA-TAAAATTATTTAAAAAGTAT
*
13184577 AAAAATTACAAAA
1 AAAAATTATAAAA
13184590 AAATATTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
27 7 0.20
28 15 0.43
29 13 0.37
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (28 bp):
AAAAATTATAAAATTATTTAAAAAGTAT
Found at i:13190467 original size:13 final size:13
Alignment explanation
Indices: 13190451--13190510 Score: 57
Period size: 13 Copynumber: 4.5 Consensus size: 13
13190441 AAATATTTAG
13190451 ATGAAATGGTTAT
1 ATGAAATGGTTAT
* *
13190464 ATGAAATGATTAC
1 ATGAAATGGTTAT
* *
13190477 ATGAAATTGTTGT
1 ATGAAATGGTTAT
**
13190490 ATGATTTGGTTAT
1 ATGAAATGGTTAT
13190503 ATGGAAAT
1 AT-GAAAT
13190511 AGATGTATAA
Statistics
Matches: 34, Mismatches: 12, Indels: 1
0.72 0.26 0.02
Matches are distributed among these distances:
13 31 0.91
14 3 0.09
ACGTcount: A:0.37, C:0.02, G:0.22, T:0.40
Consensus pattern (13 bp):
ATGAAATGGTTAT
Found at i:13190467 original size:26 final size:26
Alignment explanation
Indices: 13190414--13190493 Score: 74
Period size: 26 Copynumber: 3.0 Consensus size: 26
13190404 TGATATACAG
*
13190414 AATGATTACATGTTAAAT-GTGTAAATGA
1 AATGATTACATG--AAATGGT-TATATGA
*
13190442 AAT-ATTTAGATGAAATGGTTATATGA
1 AATGA-TTACATGAAATGGTTATATGA
* *
13190468 AATGATTACATGAAATTGTTGTATGA
1 AATGATTACATGAAATGGTTATATGA
13190494 TTTGGTTATA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
26 31 0.70
27 4 0.09
28 9 0.20
ACGTcount: A:0.41, C:0.03, G:0.19, T:0.38
Consensus pattern (26 bp):
AATGATTACATGAAATGGTTATATGA
Found at i:13191345 original size:9 final size:9
Alignment explanation
Indices: 13191328--13191364 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
13191318 TGAGTTTTCA
13191328 AATTCGAAT
1 AATTCGAAT
*
13191337 AACTCGAAT
1 AATTCGAAT
13191346 AATTCGAAT
1 AATTCGAAT
13191355 AATTCGAAT
1 AATTCGAAT
13191364 A
1 A
13191365 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:13191608 original size:29 final size:30
Alignment explanation
Indices: 13191576--13191634 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
13191566 AAAACTTTTT
*
13191576 ATTTTCCTCCT-AAACTTTTACTCCCTTCC
1 ATTTTCCCCCTAAAACTTTTACTCCCTTCC
*
13191605 ATTTTCCCCCTAAAACTTTTACTTCCTTCC
1 ATTTTCCCCCTAAAACTTTTACTCCCTTCC
13191635 CATCCCACCC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 10 0.37
30 17 0.63
ACGTcount: A:0.19, C:0.37, G:0.00, T:0.44
Consensus pattern (30 bp):
ATTTTCCCCCTAAAACTTTTACTCCCTTCC
Found at i:13196584 original size:24 final size:23
Alignment explanation
Indices: 13196551--13196605 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 23
13196541 AAATTAAAAA
* *
13196551 AAAATTTAAAAATTTTATTTTTT
1 AAAATTTAAAAAATTAATTTTTT
13196574 AAAATTATAAAAAATTAATTTTTT
1 AAAATT-TAAAAAATTAATTTTTT
13196598 ATAAATTT
1 A-AAATTT
13196606 GTAAAACATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 6 0.21
24 17 0.61
25 5 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
AAAATTTAAAAAATTAATTTTTT
Found at i:13196638 original size:19 final size:20
Alignment explanation
Indices: 13196600--13196640 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
13196590 AATTTTTTAT
*
13196600 AAATTTGTAAAACATCATTA
1 AAATTTATAAAACATCATTA
*
13196620 AAATTTATAAAA-ATTATTA
1 AAATTTATAAAACATCATTA
13196639 AA
1 AA
13196641 TAAATTTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (20 bp):
AAATTTATAAAACATCATTA
Found at i:13198145 original size:37 final size:37
Alignment explanation
Indices: 13198098--13198184 Score: 104
Period size: 37 Copynumber: 2.4 Consensus size: 37
13198088 TGTTTTGCAA
*
13198098 CAAAGCAAAGACAGAGAT-AAATAGGGGTGATTCCTTG
1 CAAAGCAAAGACAGAAATGAAAT-GGGGTGATTCCTTG
* * * *
13198135 CAAAGTAAAGATAGAAATGAACTGGGGTGGTTCCTTG
1 CAAAGCAAAGACAGAAATGAAATGGGGTGATTCCTTG
*
13198172 CAAAGCCAAGACA
1 CAAAGCAAAGACA
13198185 AGCAAAGAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
37 38 0.93
38 3 0.07
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.18
Consensus pattern (37 bp):
CAAAGCAAAGACAGAAATGAAATGGGGTGATTCCTTG
Found at i:13198238 original size:37 final size:37
Alignment explanation
Indices: 13198186--13198301 Score: 151
Period size: 37 Copynumber: 3.1 Consensus size: 37
13198176 GCCAAGACAA
* *
13198186 GCAAAGAAAAAATGGAGATCAACAGTAAAGATTCTTT
1 GCAAAGAAAAGATGGAGATCAATAGTAAAGATTCTTT
* * *
13198223 GCAAATAAAAGATGGAGATCAATAGTAAAGATTATAT
1 GCAAAGAAAAGATGGAGATCAATAGTAAAGATTCTTT
* * * *
13198260 ACAAAGAAAAGACGGAGATTAATAGTGAAGATTCTTT
1 GCAAAGAAAAGATGGAGATCAATAGTAAAGATTCTTT
13198297 GCAAA
1 GCAAA
13198302 AGTTTTGTAA
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.49, C:0.09, G:0.20, T:0.22
Consensus pattern (37 bp):
GCAAAGAAAAGATGGAGATCAATAGTAAAGATTCTTT
Found at i:13199900 original size:39 final size:38
Alignment explanation
Indices: 13199834--13199909 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 38
13199824 TCATAATTAG
* * *
13199834 TTTTGAATTCAATTTTTAAGATATTTACCTAATTTTTT
1 TTTTGAATTCAATCTTTAAGATATTTACATAAATTTTT
13199872 TTTTGAAATTCAATCTTTAAGACT-TTTACATAAATTTT
1 TTTTG-AATTCAATCTTTAAGA-TATTTACATAAATTTT
13199910 CAAGATAGAG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
38 5 0.15
39 27 0.82
40 1 0.03
ACGTcount: A:0.32, C:0.09, G:0.05, T:0.54
Consensus pattern (38 bp):
TTTTGAATTCAATCTTTAAGATATTTACATAAATTTTT
Found at i:13199959 original size:22 final size:22
Alignment explanation
Indices: 13199934--13199975 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
13199924 TCTTTTACCT
* *
13199934 TTATTTAAGTTTACAGTAAGTA
1 TTATTTAAGCTTACAATAAGTA
13199956 TTATTTAAGCTTACAATAAG
1 TTATTTAAGCTTACAATAAG
13199976 GGTTTGTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (22 bp):
TTATTTAAGCTTACAATAAGTA
Found at i:13209053 original size:84 final size:84
Alignment explanation
Indices: 13208758--13209062 Score: 299
Period size: 84 Copynumber: 3.6 Consensus size: 84
13208748 ACCAGCCAAC
* * * * * * *
13208758 AAGCAACCACTCAAATTCTTACATCCAATTTGCCTT-CTACCACCACTAAGCCTCATGTAGCAAC
1 AAGCAACCACTCAAACTCCTACAACCAATTTG-CTTCCTACCACTACTAAGCCTCATGCATCAAT
* *
13208822 AATTGAGGCCTTAAACTAGA
65 AATTAAGGCCCTAAACTAGA
* ** * * * *
13208842 AAGCAATCACTCAAACTCCTACAACCAATCGGCATCCTACCACTATTAAGCTTCTTGCATCAACT
1 AAGCAACCACTCAAACTCCTACAACCAATTTGCTTCCTACCACTACTAAGCCTCATGCATCAA-T
* * *
13208907 -ACTAAGGCCCTAAACCAAA
65 AATTAAGGCCCTAAACTAGA
* * *
13208926 AAGCAACCACCCAAACTCCTACAACCAATTTGTTTCCTGCCACTACTAAGCCTCATGCATCAATA
1 AAGCAACCACTCAAACTCCTACAACCAATTTGCTTCCTACCACTACTAAGCCTCATGCATCAATA
*
13208991 ATTAAGGCCCTAAACTAGC
66 ATTAAGGCCCTAAACTAGA
* * * * * * * *
13209010 ATGCAACCACTCAGATTCTTGCAACTAGTTTGCTTCTTACCACTACTAAGCCT
1 AAGCAACCACTCAAACTCCTACAACCAATTTGCTTCCTACCACTACTAAGCCT
13209063 GTTAGAATGA
Statistics
Matches: 174, Mismatches: 44, Indels: 6
0.78 0.20 0.03
Matches are distributed among these distances:
83 3 0.02
84 171 0.98
ACGTcount: A:0.34, C:0.32, G:0.10, T:0.25
Consensus pattern (84 bp):
AAGCAACCACTCAAACTCCTACAACCAATTTGCTTCCTACCACTACTAAGCCTCATGCATCAATA
ATTAAGGCCCTAAACTAGA
Found at i:13210913 original size:15 final size:15
Alignment explanation
Indices: 13210895--13210932 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
13210885 AATTTAACTC
*
13210895 AATTTTAGTTAATTT
1 AATTTTAATTAATTT
13210910 AATTTTAATTAATTT
1 AATTTTAATTAATTT
13210925 --TTTTAATT
1 AATTTTAATT
13210933 TTCGAATGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 8 0.36
15 14 0.64
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (15 bp):
AATTTTAATTAATTT
Found at i:13211598 original size:6 final size:7
Alignment explanation
Indices: 13211577--13211601 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
13211567 TTGGGTTGAA
13211577 TTTATTT
1 TTTATTT
13211584 TTTATTT
1 TTTATTT
13211591 TTTATTT
1 TTTATTT
13211598 TTTA
1 TTTA
13211602 AACAATTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTATTT
Found at i:13215285 original size:10 final size:10
Alignment explanation
Indices: 13215270--13215295 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
13215260 GTATACGAAT
13215270 CTGTTGAAAG
1 CTGTTGAAAG
13215280 CTGTTGAAAG
1 CTGTTGAAAG
13215290 CTGTTG
1 CTGTTG
13215296 TGATATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.12, G:0.31, T:0.35
Consensus pattern (10 bp):
CTGTTGAAAG
Found at i:13216096 original size:16 final size:16
Alignment explanation
Indices: 13216063--13216096 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
13216053 TATGTTTGTT
* *
13216063 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
13216079 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
13216095 AA
1 AA
13216097 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:13219298 original size:15 final size:16
Alignment explanation
Indices: 13219278--13219307 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13219268 GACCTAAGAG
13219278 CACA-TTCATGTAATC
1 CACATTTCATGTAATC
13219293 CACATTTCATGTAAT
1 CACATTTCATGTAAT
13219308 ACAGCGATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (16 bp):
CACATTTCATGTAATC
Found at i:13226797 original size:63 final size:62
Alignment explanation
Indices: 13226727--13226941 Score: 152
Period size: 63 Copynumber: 3.3 Consensus size: 62
13226717 ACTGTTCATA
*
13226727 ATCGTAAATCAATGAACTTAAATTGTGATCGTAAATCAACAAGTTTTAATAATACCAATTGTG
1 ATCGTAAATCAATGAACTTAAATTGTGATCGTAAATAAACAAG-TTTAATAATACCAATTGTG
* ** * *
13226790 ATCGTAAATCAGTGAACTATTTGAATGGAGTT-TGGATCGTAAATTGACGAA--CTAAAAATA--
1 ATCGTAAATCAATGAAC---TT-AA---A-TTGT-GATCGTAAATAAAC-AAGTTTAATAATACC
13226850 AATTGTTCATG
56 AATTG----TG
** *
13226861 ATCGTAAATCAATGAACTTAAGCTGTGATCGTAAATAAACAAGCTTTAATAATACCAATCGTG
1 ATCGTAAATCAATGAACTTAAATTGTGATCGTAAATAAACAAG-TTTAATAATACCAATTGTG
* *
13226924 TTCGTAAATCAGTGAACT
1 ATCGTAAATCAATGAACT
13226942 ATTTGAATAG
Statistics
Matches: 117, Mismatches: 15, Indels: 40
0.68 0.09 0.23
Matches are distributed among these distances:
62 2 0.02
63 47 0.40
64 1 0.01
65 7 0.06
66 2 0.02
67 13 0.11
68 2 0.02
69 7 0.06
70 2 0.02
71 32 0.27
72 2 0.02
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.32
Consensus pattern (62 bp):
ATCGTAAATCAATGAACTTAAATTGTGATCGTAAATAAACAAGTTTAATAATACCAATTGTG
Found at i:13227075 original size:134 final size:134
Alignment explanation
Indices: 13226484--13227068 Score: 719
Period size: 134 Copynumber: 4.4 Consensus size: 134
13226474 AAACTGTTCA
* * * **
13226484 TGATTGTAAATCAACAAGCTTTAATAATACCAGTTGTAATCATAAATCAGTGAACCGTTTGAAT-
1 TGATCGTAAATCAACAAGCTTTAATAATACCAGTTGTGATCGTAAATCAGTGAACTATTTGAATA
* * ** * *
13226548 GAGGTTGTGATTGTAAATCAGTAAACTCAAAATAAATTGTTCATGATTGTAAATCAACGAACTTA
66 GA-GTTGCGATCGTAAATCAGCGAACTCAAAATAAATTGTTCATGATCGTAAATCAATGAACTTA
13226613 AGCTG
130 AGCTG
* * ** * *
13226618 TGATCGTAAATCAGA-AAGCTTTAGTAATACTAGCCGTGATCATAAATCAGTGAACTTTTTGAAT
1 TGATCGTAAATCA-ACAAGCTTTAATAATACCAGTTGTGATCGTAAATCAGTGAACTATTTGAAT
* * * * *
13226682 AAAGTTGCAATTGTAAATCAGCGAACTCAAAATAAACTGTTCATAATCGTAAATCAATGAACTTA
65 AGAGTTGCGATCGTAAATCAGCGAACTCAAAATAAATTGTTCATGATCGTAAATCAATGAACTTA
**
13226747 AATTG
130 AGCTG
* * *
13226752 TGATCGTAAATCAACAAGTTTTAATAATACCAATTGTGATCGTAAATCAGTGAACTATTTGAATG
1 TGATCGTAAATCAACAAGCTTTAATAATACCAGTTGTGATCGTAAATCAGTGAACTATTTGAATA
* *
13226817 GAGTTTG-GATCGTAAAT-TGACGAACTAAAAATAAATTGTTCATGATCGTAAATCAATGAACTT
66 GAG-TTGCGATCGTAAATCAG-CGAACTCAAAATAAATTGTTCATGATCGTAAATCAATGAACTT
13226880 AAGCTG
129 AAGCTG
* * * *
13226886 TGATCGTAAATAAACAAGCTTTAATAATACCAATCGTGTTCGTAAATCAGTGAACTATTTGAATA
1 TGATCGTAAATCAACAAGCTTTAATAATACCAGTTGTGATCGTAAATCAGTGAACTATTTGAATA
* * * * *
13226951 GAGTTGCGACCATAAATCAGTGAACTTAAAATGAATTGTTCATGATCGTAAATCAATGAACTTAA
66 GAGTTGCGATCGTAAATCAGCGAACTCAAAATAAATTGTTCATGATCGTAAATCAATGAACTTAA
*
13227016 GCTA
131 GCTG
* * * *
13227020 TGATTGCAAATCAGCAAGCTTTAATAATACCAGTTGTGATTGTAAATCA
1 TGATCGTAAATCAACAAGCTTTAATAATACCAGTTGTGATCGTAAATCA
13227069 ACGAACTCAA
Statistics
Matches: 387, Mismatches: 57, Indels: 14
0.84 0.12 0.03
Matches are distributed among these distances:
133 5 0.01
134 376 0.97
135 6 0.02
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.31
Consensus pattern (134 bp):
TGATCGTAAATCAACAAGCTTTAATAATACCAGTTGTGATCGTAAATCAGTGAACTATTTGAATA
GAGTTGCGATCGTAAATCAGCGAACTCAAAATAAATTGTTCATGATCGTAAATCAATGAACTTAA
GCTG
Found at i:13227130 original size:99 final size:99
Alignment explanation
Indices: 13226963--13227174 Score: 262
Period size: 99 Copynumber: 2.1 Consensus size: 99
13226953 GTTGCGACCA
** * * * * * **
13226963 TAAATCAGTGAACTTAAAATGAATTGTTCATGATCGTAAATCAATGAACTTAAGCTATGATTGCA
1 TAAATCAACGAACTCAAAATGAACTATTCATGATCATAAATCAATGAACTTAAACTATGATAACA
* * * *
13227028 AATCAGCAAGCTTTAATAATACCAGTTGTGATTG
66 AATCAACAAGCTTTAATAATACCAGTCGGGATCG
* * * *
13227062 TAAATCAACGAACTCAAAATGAACTATTCATGATCATAAATCATTGAACTTAAATTGTGATAATA
1 TAAATCAACGAACTCAAAATGAACTATTCATGATCATAAATCAATGAACTTAAACTATGATAACA
*
13227127 AATCAACAAGTTTTAATAATACCAGTCGGGATCG
66 AATCAACAAGCTTTAATAATACCAGTCGGGATCG
13227161 TAAATCAACGAACT
1 TAAATCAACGAACT
13227175 GTTGAATGGA
Statistics
Matches: 95, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
99 95 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.30
Consensus pattern (99 bp):
TAAATCAACGAACTCAAAATGAACTATTCATGATCATAAATCAATGAACTTAAACTATGATAACA
AATCAACAAGCTTTAATAATACCAGTCGGGATCG
Found at i:13227218 original size:133 final size:133
Alignment explanation
Indices: 13227051--13227310 Score: 376
Period size: 133 Copynumber: 2.0 Consensus size: 133
13227041 TAATAATACC
* * * *
13227051 AGTTGTGATTGTAAATCAACGAACTCAAAATGAACTATTCATGATCATAAATCATTGAACTTAAA
1 AGTTGCGATCGTAAATCAACAAACTCAAAATGAACTATTCATGATCATAAATCACTGAACTTAAA
* * *
13227116 TTGTGATAATAAATCAACAAGTTTTAATAATACCAGTCGGGATCGTAAATCAACGAACTGTTGAA
66 TTGTGATAATAAATCAACAAGCTTTAATAATACCAATCGGGATCATAAATCAACGAACTGTTGAA
13227181 TGG
131 TGG
* * * *
13227184 AGTTGCGATCGTAAATTAACAAACTCAAAATGAACTATTTATGATCGTAAATCACTGAACTTAAG
1 AGTTGCGATCGTAAATCAACAAACTCAAAATGAACTATTCATGATCATAAATCACTGAACTTAAA
* * * * *
13227249 TTGTGATCATAAATCAACAAGCTTTAATAATTCCAATCGTGATCATAAATCATCGATCTGTT
66 TTGTGATAATAAATCAACAAGCTTTAATAATACCAATCGGGATCATAAATCAACGAACTGTT
13227311 TGATGTATTC
Statistics
Matches: 111, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
133 111 1.00
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (133 bp):
AGTTGCGATCGTAAATCAACAAACTCAAAATGAACTATTCATGATCATAAATCACTGAACTTAAA
TTGTGATAATAAATCAACAAGCTTTAATAATACCAATCGGGATCATAAATCAACGAACTGTTGAA
TGG
Found at i:13228056 original size:16 final size:16
Alignment explanation
Indices: 13228035--13228065 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
13228025 CCAAACCTAC
13228035 AAAAAATAGATTTCTA
1 AAAAAATAGATTTCTA
13228051 AAAAAATAGATTTCT
1 AAAAAATAGATTTCT
13228066 TTTGAGCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.32
Consensus pattern (16 bp):
AAAAAATAGATTTCTA
Found at i:13233017 original size:24 final size:23
Alignment explanation
Indices: 13232985--13233033 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
13232975 TAAATTTATA
* *
13232985 AATAAAATGTATGATAATATAAAT
1 AATAAAATGAATAAT-ATATAAAT
*
13233009 AATATAATGAATAATATATAAAT
1 AATAAAATGAATAATATATAAAT
13233032 AA
1 AA
13233034 AAGTTATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 10 0.45
24 12 0.55
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (23 bp):
AATAAAATGAATAATATATAAAT
Found at i:13233022 original size:21 final size:21
Alignment explanation
Indices: 13232981--13233035 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 21
13232971 ATACTAAATT
*
13232981 TATAAATAAAATGTATGATAA
1 TATAAATAAAATGAATGATAA
*
13233002 TATAAATAATAT-AATGAATAATA
1 TATAAATAAAATGAATG-AT-A-A
13233025 TATAAATAAAA
1 TATAAATAAAA
13233036 GTTATATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 3 0.11
21 13 0.46
22 1 0.04
23 11 0.39
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (21 bp):
TATAAATAAAATGAATGATAA
Found at i:13240554 original size:22 final size:25
Alignment explanation
Indices: 13240528--13240581 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
13240518 TTATAAATTC
13240528 AATTTAAAAG-ATA-TAAT-ACAAT
1 AATTTAAAAGCATATTAATAACAAT
*
13240550 AATTT-CAAGCATATTTAATAACAAT
1 AATTTAAAAGCATA-TTAATAACAAT
13240575 AATTTAA
1 AATTTAA
13240582 TCATCAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 3 0.12
22 8 0.32
24 4 0.16
25 10 0.40
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (25 bp):
AATTTAAAAGCATATTAATAACAAT
Found at i:13255383 original size:26 final size:25
Alignment explanation
Indices: 13255332--13255383 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
13255322 GCTTACCGTT
* * *
13255332 TCAGCTCAATAGAGCTTAATATTCA
1 TCAGCTCAAGAGAGCTTAACAATCA
*
13255357 TCAGCTCAAGAGAAGCTTACCAATCA
1 TCAGCTCAAGAG-AGCTTAACAATCA
13255383 T
1 T
13255384 GGCTCGAAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (25 bp):
TCAGCTCAAGAGAGCTTAACAATCA
Found at i:13259939 original size:3 final size:3
Alignment explanation
Indices: 13259926--13260021 Score: 63
Period size: 3 Copynumber: 32.3 Consensus size: 3
13259916 AAGGAATACT
* * * * *
13259926 ATA ACA ATA ATA AT- GTA ATT ATA ATA ATA ATA TTA ATA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
13259973 ATC AT- ATC ATA ATA GTA ATA AGTA GATA A-A ATA ATG ATA ATA ATG
1 ATA ATA ATA ATA ATA ATA ATA A-TA -ATA ATA ATA ATA ATA ATA ATA
13260018 ATA A
1 ATA A
13260022 CAGGGATAAA
Statistics
Matches: 70, Mismatches: 18, Indels: 10
0.71 0.18 0.10
Matches are distributed among these distances:
2 5 0.07
3 60 0.86
4 4 0.06
5 1 0.01
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:13266127 original size:13 final size:14
Alignment explanation
Indices: 13266109--13266137 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
13266099 TTTATTAAAT
13266109 AATATA-ATTTTAA
1 AATATATATTTTAA
13266122 AATATATATTTTAA
1 AATATATATTTTAA
13266136 AA
1 AA
13266138 ATACAGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
AATATATATTTTAA
Found at i:13266128 original size:15 final size:15
Alignment explanation
Indices: 13266105--13266137 Score: 50
Period size: 14 Copynumber: 2.2 Consensus size: 15
13266095 TTAATTTATT
13266105 AAATAATATAATTTTA
1 AAATAATAT-ATTTTA
13266121 AAAT-ATATATTTTA
1 AAATAATATATTTTA
13266135 AAA
1 AAA
13266138 ATACAGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 4 0.24
16 4 0.24
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
AAATAATATATTTTA
Found at i:13266138 original size:15 final size:14
Alignment explanation
Indices: 13266103--13266140 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
13266093 TTTTAATTTA
13266103 TTAAATAATATAATT
1 TTAAA-AATATAATT
13266118 TT-AAAATATATATT
1 TTAAAAATATA-ATT
13266132 TTAAAAATA
1 TTAAAAATA
13266141 CAGATTTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 6 0.29
14 7 0.33
15 8 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TTAAAAATATAATT
Found at i:13278084 original size:17 final size:17
Alignment explanation
Indices: 13278057--13278095 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
13278047 CCATATAGAA
13278057 TTATA-CTTTTTTTATT
1 TTATATCTTTTTTTATT
13278073 TTATATCTTTTTTTATT
1 TTATATCTTTTTTTATT
13278090 TTATAT
1 TTATAT
13278096 TGATTAGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (17 bp):
TTATATCTTTTTTTATT
Found at i:13281160 original size:32 final size:32
Alignment explanation
Indices: 13281096--13281161 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 32
13281086 AAAGTTCATA
* * **
13281096 TTTATATAATTTTTAAAGGATTAAATTAAATT
1 TTTATATAATTTTAAAAGGAATAAAGCAAATT
13281128 TTTAT-TAATTTTAAAAGGAATAAAGCATAATT
1 TTTATATAATTTTAAAAGGAATAAAGCA-AATT
13281160 TT
1 TT
13281162 ATTTTTACTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 18 0.62
32 11 0.38
ACGTcount: A:0.44, C:0.02, G:0.08, T:0.47
Consensus pattern (32 bp):
TTTATATAATTTTAAAAGGAATAAAGCAAATT
Found at i:13281487 original size:31 final size:32
Alignment explanation
Indices: 13281426--13281488 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
13281416 CAAGGCTCCC
13281426 CATTTTTGAAAAAATTCTTTTTATTTTATTTT
1 CATTTTTGAAAAAATTCTTTTTATTTTATTTT
* *
13281458 CATTTTT-AAAATATT-TTTTATTTTTTATTTT
1 CATTTTTGAAAAAATTCTTTT-TATTTTATTTT
13281489 TTTTGAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 4 0.14
31 17 0.61
32 7 0.25
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.67
Consensus pattern (32 bp):
CATTTTTGAAAAAATTCTTTTTATTTTATTTT
Found at i:13281780 original size:13 final size:13
Alignment explanation
Indices: 13281762--13281786 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13281752 TAGTATTATT
13281762 ATTATTAAAATAA
1 ATTATTAAAATAA
13281775 ATTATTAAAATA
1 ATTATTAAAATA
13281787 GTCACTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATTATTAAAATAA
Found at i:13284528 original size:18 final size:17
Alignment explanation
Indices: 13284507--13284563 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 17
13284497 TTTTTGAGTA
13284507 TTTTATATATTTTATAAT
1 TTTTATATATTTT-TAAT
*
13284525 TTTTAATAAATTTTTAAT
1 TTTT-ATATATTTTTAAT
*
13284543 TTATATATATTTTTTAAT
1 TTTTATATA-TTTTTAAT
13284561 TTT
1 TTT
13284564 AATTTATGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
17 4 0.12
18 21 0.64
19 8 0.24
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTATATATTTTTAAT
Found at i:13285819 original size:124 final size:124
Alignment explanation
Indices: 13285599--13285843 Score: 436
Period size: 124 Copynumber: 2.0 Consensus size: 124
13285589 GAAGTTTCAG
*
13285599 AACAAGTTACAGTGGAACCGGCTGCACCCAGAGTCAATTCAAAATGTTAAGCCCAGCTGAGGGAG
1 AACAAGTTACAGTGGAACCGGCTGCACCCAGAGTCAATTCAAAATGTTAAGCCCAGCTAAGGGAG
13285664 GTTTTAATGATCTCATAAGCCGTCCAATTGATATCTTGGAAGATGAAAAGGTTCCTGTT
66 GTTTTAATGATCTCATAAGCCGTCCAATTGATATCTTGGAAGATGAAAAGGTTCCTGTT
* * *
13285723 AACAAGTTACAGTGGAACCGGCTGCACCTAGAGTTAATTCAAAATGTTGAGCCCAGCTAAGGGAG
1 AACAAGTTACAGTGGAACCGGCTGCACCCAGAGTCAATTCAAAATGTTAAGCCCAGCTAAGGGAG
* *
13285788 GTTTTAATGATCTCATAAGCCGTCCAATTGATATCTTGGAAGGTGAAAATGTTCCT
66 GTTTTAATGATCTCATAAGCCGTCCAATTGATATCTTGGAAGATGAAAAGGTTCCT
13285844 ATTCTTCCAA
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
124 115 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (124 bp):
AACAAGTTACAGTGGAACCGGCTGCACCCAGAGTCAATTCAAAATGTTAAGCCCAGCTAAGGGAG
GTTTTAATGATCTCATAAGCCGTCCAATTGATATCTTGGAAGATGAAAAGGTTCCTGTT
Found at i:13313373 original size:20 final size:20
Alignment explanation
Indices: 13313344--13313381 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
13313334 AAATTTTAAC
13313344 TTTTTATCTCCCAAAAGCGT
1 TTTTTATCTCCCAAAAGCGT
*
13313364 TTTTTCTCTCCCAAAAGC
1 TTTTTATCTCCCAAAAGC
13313382 ACTTTTAGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.29, G:0.08, T:0.39
Consensus pattern (20 bp):
TTTTTATCTCCCAAAAGCGT
Found at i:13313387 original size:20 final size:20
Alignment explanation
Indices: 13313342--13313387 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
13313332 AAAAATTTTA
13313342 ACTTTTTATCTCCCAAAAGC
1 ACTTTTTATCTCCCAAAAGC
** *
13313362 GTTTTTTCTCTCCCAAAAGC
1 ACTTTTTATCTCCCAAAAGC
13313382 ACTTTT
1 ACTTTT
13313388 AGTGTTTAAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.28, G:0.07, T:0.41
Consensus pattern (20 bp):
ACTTTTTATCTCCCAAAAGC
Found at i:13313558 original size:33 final size:35
Alignment explanation
Indices: 13313521--13313617 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
13313511 ATGGTTATAT
13313521 TTAAATATTTAAAATATAATTTATATATT-C-TAA
1 TTAAATATTTAAAATATAATTTATATATTGCTTAA
* *
13313554 TTAAAT-TTTATAA-ATAATTAATATTTATTGCTTAA
1 TTAAATATTTAAAATATAATT--TATATATTGCTTAA
*
13313589 --AAATATTTAAAATTTATATTTTATATATT
1 TTAAATATTTAAAA--TATAATTTATATATT
13313618 AAAATATTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 6 0.12
32 6 0.12
33 17 0.33
34 7 0.14
35 10 0.20
37 5 0.10
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (35 bp):
TTAAATATTTAAAATATAATTTATATATTGCTTAA
Found at i:13319664 original size:40 final size:40
Alignment explanation
Indices: 13319629--13319794 Score: 171
Period size: 39 Copynumber: 4.2 Consensus size: 40
13319619 TACTCGTTCG
* *
13319629 AATGCCTTCGGGACATAGCCCG-GTTATAGTAACTCGCACA
1 AATGCCTTCGGGACATAACCCGAATT-TAGTAACTCGCACA
* *
13319669 AATTCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACA
1 AATGCCTTCGGGACATAACCCGAATTTAGTAACTCGCACA
* * * *
13319709 AATGCCTTCGGG-CTTAGCTCGGAA-TTAGTATCTCGCACA
1 AATGCCTTCGGGACATAAC-CCGAATTTAGTAACTCGCACA
* * *
13319748 AATGCCTTCGGG-CTTAGCCCGGAA-TTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCC-GAATTTAGTAACTCGCACA
13319787 AATGCCTT
1 AATGCCTT
13319795 TGGATCTTAG
Statistics
Matches: 114, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 63 0.55
40 48 0.42
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGAATTTAGTAACTCGCACA
Found at i:13319738 original size:79 final size:79
Alignment explanation
Indices: 13319629--13319855 Score: 230
Period size: 79 Copynumber: 2.8 Consensus size: 79
13319619 TACTCGTTCG
* *
13319629 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATTCCTTCGGGACTTAACCC-GAA
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAACCCGGAA
13319693 TTTAGTAACTCGCACA
65 -TTAGTAACTCGCACA
* * * *
13319709 AATGCCTTCGGG-CTTAGCTCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGAA
*
13319772 TTAGTATCTCGCACA
65 TTAGTAACTCGCACA
* * * * * * *
13319787 AATGCCTT-TGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGA-CATAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGG-CTTAACCCGG
13319850 ACATTA
63 A-ATTA
13319856 TTCAAATAAC
Statistics
Matches: 125, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
77 2 0.02
78 30 0.24
79 57 0.46
80 32 0.26
81 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGAAT
TAGTAACTCGCACA
Found at i:13319748 original size:39 final size:40
Alignment explanation
Indices: 13319629--13319855 Score: 243
Period size: 40 Copynumber: 5.7 Consensus size: 40
13319619 TACTCGTTCG
* *
13319629 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACA
* *
13319669 AATTCCTTCGGGACTTAACCC-GAATTTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAA-TTAGTAACTCGCACA
* *
13319709 AATGCCTTCGGG-CTTAGCTCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACA
*
13319748 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACA
* * * * *
13319787 AATGCCTT-TGGATCTTAGTCCGG-ATATGGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCACA
13319828 AA-GCCTTCGGGACTTAGCCCGGACATTA
1 AATGCCTTCGGGACTTAGCCCGGA-ATTA
13319856 TTCAAATAAC
Statistics
Matches: 159, Mismatches: 18, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
38 2 0.01
39 69 0.43
40 73 0.46
41 13 0.08
42 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACA
Found at i:13325787 original size:46 final size:46
Alignment explanation
Indices: 13325720--13325892 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
13325710 TGTAACCCGC
* *
13325720 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTCGGCATTCGCAT
* *
13325766 CCATAAGTGAACTCGGACTCAACTCAGCGAGC-TCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTCGGCATTCGC-A--T
* *** *
13325812 ACATCTCTCGAACTCGGACTCAACTCAACGAG-TTCGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTTCGGCATTCGCAT
13325858 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTCG
13325893 TATGCCTAAA
Statistics
Matches: 105, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 30 0.29
46 41 0.39
47 25 0.24
48 4 0.04
49 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTTCGGCATTCGCAT
Found at i:13325898 original size:92 final size:93
Alignment explanation
Indices: 13325728--13325900 Score: 285
Period size: 92 Copynumber: 1.9 Consensus size: 93
13325718 GCCCATAAGT
* * *
13325728 GAACTCGGACTCAACTCAACGAGCTTAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAG
1 GAACTCGGACTCAACTCAACGAGCTTAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
13325793 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
13325821 GAACTCGGACTCAACTCAACGAG-TTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTTAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
13325885 CGAGTTCGTATGCCTA
66 CGAGCTCGGATGCCTA
13325901 AAATCCTAGT
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
92 51 0.69
93 23 0.31
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTTAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:13325912 original size:45 final size:44
Alignment explanation
Indices: 13325771--13325912 Score: 105
Period size: 45 Copynumber: 3.1 Consensus size: 44
13325761 CGCATCCATA
* * *
13325771 AGTGAACTCGGACTCAACTCAGCGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGCATGCCTA---A-ATC-CT
* *
13325820 --CGAACTCGGACTCAACTCAACGAGTTCGACATTCGC---ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCG-CATGC-CTAAATCC-T
*
13325862 AAGTGAACTCGGACTCAACTCAACGAGTTCGTATGCCTAAAATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGCATGCCT-AAATCCT
13325908 AGTGA
1 AGTGA
13325913 CATGTCACTT
Statistics
Matches: 75, Mismatches: 8, Indels: 24
0.70 0.07 0.22
Matches are distributed among these distances:
41 1 0.01
42 4 0.05
43 1 0.01
44 3 0.04
45 32 0.43
46 1 0.01
47 29 0.39
48 3 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGCATGCCTAAATCCT
Found at i:13327863 original size:15 final size:15
Alignment explanation
Indices: 13327810--13327886 Score: 81
Period size: 15 Copynumber: 5.4 Consensus size: 15
13327800 CAAAGATAAC
*
13327810 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
13327824 AA-AAATCAAG-ATA
1 AAGAAATCCAGAATA
*
13327837 GAGAAA-CCAGAATA
1 AAGAAATCCAGAATA
13327851 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
13327866 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
13327881 AAGAAA
1 AAGAAA
13327887 CCCAAGATAC
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
13 11 0.22
14 14 0.27
15 26 0.51
ACGTcount: A:0.61, C:0.12, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:13327895 original size:15 final size:15
Alignment explanation
Indices: 13327821--13327895 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
13327811 AGAAAACCGA
13327821 ATAAA-AAAT-CAAG
1 ATAAAGAAATCCAAG
*
13327834 ATAGAGAAA-CC-AG
1 ATAAAGAAATCCAAG
13327847 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
13327862 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
13327878 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
13327893 ATA
1 ATA
13327896 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
13 6 0.12
14 12 0.24
15 31 0.62
16 1 0.02
ACGTcount: A:0.59, C:0.13, G:0.16, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:13330866 original size:46 final size:46
Alignment explanation
Indices: 13330799--13330973 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
13330789 TGTAACCCGC
13330799 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
13330845 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCACAT
* * * * *
13330895 CTC-T---TGAACTCGGACTCAACTCAACGAGTTCTGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
* * *
13330938 CCATAAGTGATCTCGGAATCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
13330974 ATACCCAAAT
Statistics
Matches: 110, Mismatches: 8, Indels: 22
0.79 0.06 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
46 62 0.56
47 27 0.25
48 1 0.01
49 1 0.01
50 6 0.05
51 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
Found at i:13330918 original size:93 final size:93
Alignment explanation
Indices: 13330806--13330975 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
13330796 CGCCCATAAG
* * *
13330806 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGAATCAACTCA
13330871 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* * * *
13330899 TGAACTCGGACTCAACTCAACGAGTTCTGACATTCGCATCCATAAGTGATCTCGGAATCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGAATCAACTCA
*
13330964 ACGAGTTCGGAT
66 ACGAGCTCGGAT
13330976 ACCCAAATAT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGAATCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:13332942 original size:15 final size:15
Alignment explanation
Indices: 13332894--13332956 Score: 76
Period size: 15 Copynumber: 4.3 Consensus size: 15
13332884 CAAAGATAAT
*
13332894 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
13332908 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
13332923 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
13332938 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
13332953 AAGA
1 AAGA
13332957 GATCTGGGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
14 9 0.22
15 31 0.76
16 1 0.02
ACGTcount: A:0.60, C:0.14, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:13344272 original size:16 final size:18
Alignment explanation
Indices: 13344253--13344287 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
13344243 ATATTATGAG
13344253 ATAATTTAT-TT-TAGGA
1 ATAATTTATATTATAGGA
13344269 ATAATTTATATTATAGGA
1 ATAATTTATATTATAGGA
13344287 A
1 A
13344288 GTAGAGGGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 2 0.12
18 6 0.35
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (18 bp):
ATAATTTATATTATAGGA
Found at i:13345638 original size:45 final size:46
Alignment explanation
Indices: 13345581--13345757 Score: 167
Period size: 45 Copynumber: 3.8 Consensus size: 46
13345571 TTTGGGTGAC
* * *
13345581 ATGTGAGTCAATGTAAGACCATGTTGGATATGGCATCGGTGTTGA-
1 ATGTGAGCCAATGTAAGACCATGTTGGACATGGCATCGGCGTTGAG
* * *
13345626 TTGTGAGCCAATGTAAGACAATGTTGGACATGGCATTGGCGTTGAG
1 ATGTGAGCCAATGTAAGACCATGTTGGACATGGCATCGGCGTTGAG
* * * * * ** *
13345672 ACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAAC
1 ATGTGAGCCAATGTAAGACCATGT-T-GGACATGGCATCGGCGTTGAG
* * *
13345720 ATGTGAGCTAGTGTAAGACCATGTCGGGACATGGCATC
1 ATGTGAGCCAATGTAAGACCATGT-TGGACATGGCATC
13345758 AGCAATTCAC
Statistics
Matches: 109, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
45 39 0.36
46 18 0.17
47 13 0.12
48 39 0.36
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (46 bp):
ATGTGAGCCAATGTAAGACCATGTTGGACATGGCATCGGCGTTGAG
Found at i:13345706 original size:48 final size:48
Alignment explanation
Indices: 13345637--13345757 Score: 149
Period size: 48 Copynumber: 2.6 Consensus size: 48
13345627 TGTGAGCCAA
* * * ** *
13345637 TGTAAGACAATGT-T-GGACATGGCATTGGCGTTGAGACGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACACGAGAGCTAG
* *
13345683 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGTGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACACGAGAGCTAG
13345731 TGTAAGACCATGTC-GGGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
13345758 AGCAATTCAC
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
46 12 0.18
47 14 0.22
48 39 0.60
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.23
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACACGAGAGCTAG
Found at i:13351567 original size:46 final size:46
Alignment explanation
Indices: 13351432--13351576 Score: 152
Period size: 46 Copynumber: 3.1 Consensus size: 46
13351422 TGAATAATGT
*
13351432 GAGTTCTGACATTCGCACCCATATGTGAACTCGGACTCAACTCAGC
1 GAGTTCTGACATTCGCACCCATATGTGAACTCGGACTCAACTCAAC
* * * ** * * *
13351478 GAGCTC-G-GATGC-CTAGTTACATCTCTCGAACTCGGACTTAACTCAAC
1 GAGTTCTGACATTCGC-A--CCCATATGT-GAACTCGGACTCAACTCAAC
13351525 GAGTTCTGACATTCGCACCCATATGTGAACTCGGACTCAACTCAAC
1 GAGTTCTGACATTCGCACCCATATGTGAACTCGGACTCAACTCAAC
13351571 GAGTTC
1 GAGTTC
13351577 GTATGCCTAA
Statistics
Matches: 75, Mismatches: 17, Indels: 14
0.71 0.16 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.05
45 1 0.01
46 35 0.47
47 28 0.37
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (46 bp):
GAGTTCTGACATTCGCACCCATATGTGAACTCGGACTCAACTCAAC
Found at i:13353540 original size:15 final size:15
Alignment explanation
Indices: 13353516--13353565 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
13353506 TCAAAGATAG
*
13353516 AGAAACCCAGAATAA
1 AGAAATCCAGAATAA
13353531 AGAAATCCAGAATAA
1 AGAAATCCAGAATAA
* * *
13353546 AGAGATCCGGGATAA
1 AGAAATCCAGAATAA
13353561 AGAAA
1 AGAAA
13353566 CCCAAGATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.56, C:0.14, G:0.20, T:0.10
Consensus pattern (15 bp):
AGAAATCCAGAATAA
Found at i:13356556 original size:46 final size:46
Alignment explanation
Indices: 13356489--13356660 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
13356479 TGTAACCCGC
13356489 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
*
13356535 CCATAAGTGAACTCGGACTCAACACAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCACAT
* * * * *
13356585 -C-T--CTGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
* *
13356626 CCATAAGTG-ACTCGGAATCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
13356661 ATACCCAAAT
Statistics
Matches: 106, Mismatches: 9, Indels: 23
0.77 0.07 0.17
Matches are distributed among these distances:
40 2 0.02
41 3 0.03
42 2 0.02
43 1 0.01
44 23 0.22
45 4 0.04
46 60 0.57
48 2 0.02
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
Found at i:13356607 original size:92 final size:90
Alignment explanation
Indices: 13356496--13356662 Score: 253
Period size: 92 Copynumber: 1.8 Consensus size: 90
13356486 CGCCCATAAG
* * *
13356496 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACACA
1 TGAACTCGGACTCAACTCAACGAGCTC-GACATTCACATCCATAAGTG-ACTCGGAATCAACACA
13356561 ACGAGCTCGGATGCCTAGTTACATCTC
64 ACGAGCTCGGATGCCTAGTTACATCTC
* * *
13356588 TGAACTCGGACTCAACTCAACGAGTTCGACATTCGCATCCATAAGTGACTCGGAATCAACTCAAC
1 TGAACTCGGACTCAACTCAACGAGCTCGACATTCACATCCATAAGTGACTCGGAATCAACACAAC
*
13356653 GAGTTCGGAT
66 GAGCTCGGAT
13356663 ACCCAAATAT
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
90 25 0.37
91 17 0.25
92 26 0.38
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (90 bp):
TGAACTCGGACTCAACTCAACGAGCTCGACATTCACATCCATAAGTGACTCGGAATCAACACAAC
GAGCTCGGATGCCTAGTTACATCTC
Found at i:13358622 original size:14 final size:15
Alignment explanation
Indices: 13358563--13358623 Score: 67
Period size: 14 Copynumber: 4.3 Consensus size: 15
13358553 CAAAGATAAC
*
13358563 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
13358577 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
13358592 GAGAAA-CCAGAATA
1 AAGAAATCCAGAATA
13358606 AAGAAATCCAGAA-A
1 AAGAAATCCAGAATA
13358620 AAGA
1 AAGA
13358624 GATCGGATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 25 0.62
15 15 0.38
ACGTcount: A:0.62, C:0.13, G:0.16, T:0.08
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:13358963 original size:16 final size:16
Alignment explanation
Indices: 13358942--13358976 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
13358932 GCTTTCATCA
13358942 ACACCAGAATTAGAAG
1 ACACCAGAATTAGAAG
13358958 ACACCAGAATTAGAAG
1 ACACCAGAATTAGAAG
13358974 ACA
1 ACA
13358977 TTCCCATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.20, G:0.17, T:0.11
Consensus pattern (16 bp):
ACACCAGAATTAGAAG
Found at i:13369928 original size:16 final size:18
Alignment explanation
Indices: 13369909--13369943 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
13369899 ATATTATGAG
13369909 ATAATTTAT-TT-TAGGA
1 ATAATTTATATTATAGGA
13369925 ATAATTTATATTATAGGA
1 ATAATTTATATTATAGGA
13369943 A
1 A
13369944 GTAGAGGGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 2 0.12
18 6 0.35
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (18 bp):
ATAATTTATATTATAGGA
Found at i:13371293 original size:45 final size:47
Alignment explanation
Indices: 13371232--13371412 Score: 188
Period size: 45 Copynumber: 3.9 Consensus size: 47
13371222 GACATTTGGG
* * *
13371232 TGACATGTGAGTCAATGTAAGACCATGT-TGGATATGGCATCGGTGT
1 TGACATGTGAGCCAATGTAAGACCATGTCTGGACATGGCATCGGCGT
* * *
13371278 TGA-TTGTGAGCCAATGTAAGACAATGT-TGGACATGGCATTGGCGT
1 TGACATGTGAGCCAATGTAAGACCATGTCTGGACATGGCATCGGCGT
* * * * * *
13371323 TGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
1 TGACATGTGAGCCAATGTAAGACCATGTCT-GGACATGGCATCGGCGT
** * *
13371371 CAACATGTGAGCCAGTGTAAGACCATGTCGGGACATGGCATC
1 TGACATGTGAGCCAATGTAAGACCATGTCTGGACATGGCATC
13371413 AGCAATTCAC
Statistics
Matches: 111, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
45 39 0.35
46 21 0.19
47 13 0.12
48 38 0.34
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25
Consensus pattern (47 bp):
TGACATGTGAGCCAATGTAAGACCATGTCTGGACATGGCATCGGCGT
Found at i:13371361 original size:48 final size:48
Alignment explanation
Indices: 13371285--13371412 Score: 145
Period size: 48 Copynumber: 2.7 Consensus size: 48
13371275 TGTTGATTGT
* * * * ** *
13371285 GAGCCAATGTAAGACAATGT-T-GGACATGGCATTGGCGTTGAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACACGA
* * *
13371331 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACACGA
13371379 GAGCCAGTGTAAGACCATGTC-GGGACATGGCATC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
13371413 AGCAATTCAC
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
46 17 0.25
47 14 0.20
48 38 0.55
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.21
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACACGA
Found at i:13377536 original size:46 final size:46
Alignment explanation
Indices: 13377486--13377661 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
13377476 TGTTTGGGCA
*
13377486 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
13377532 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * * *
13377579 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
13377625 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
13377662 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
45 2 0.02
46 67 0.65
47 34 0.33
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:13377641 original size:93 final size:93
Alignment explanation
Indices: 13377482--13377654 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
13377472 AGGATGTTTG
* *
13377482 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCCGAACTCGTTGAG
13377547 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
13377575 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCC-GAACTCGTTGA
13377639 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
13377655 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:13380654 original size:45 final size:45
Alignment explanation
Indices: 13380532--13380654 Score: 201
Period size: 45 Copynumber: 2.7 Consensus size: 45
13380522 TTCGGTGACA
* * *
13380532 TGTGAGCCAGTGTAAGACCATGCTAGACATGGAATCAGCGTTAAT
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCAGCGTTAAT
* *
13380577 TGTGAGCCAGTGTAAGACCATGTTGCACATGGCATCAGTGTTAAT
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCAGCGTTAAT
13380622 TGTGAGCCAGTGTAAGACCATGTTGGACATGGC
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGC
13380655 CTCGGCCTTG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 72 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (45 bp):
TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCAGCGTTAAT
Found at i:13386417 original size:20 final size:20
Alignment explanation
Indices: 13386384--13386427 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
13386374 AATGAGCACA
* *
13386384 AAAACAGAAGAAATCAAGAAG
1 AAAACAGAACAAAT-AAGAAC
13386405 AAAA-AGAACAAATAAGAAC
1 AAAACAGAACAAATAAGAAC
13386424 AAAA
1 AAAA
13386428 GAAAGAAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 9 0.43
20 8 0.38
21 4 0.19
ACGTcount: A:0.73, C:0.09, G:0.14, T:0.05
Consensus pattern (20 bp):
AAAACAGAACAAATAAGAAC
Found at i:13390662 original size:23 final size:23
Alignment explanation
Indices: 13390565--13390669 Score: 97
Period size: 23 Copynumber: 4.6 Consensus size: 23
13390555 TCAACTCATA
*
13390565 AGAGCTTACTGTTTTCAGCTCATT
1 AGAGCTTACTG-TTTCAGCTCAAT
* ** *
13390589 GGAGCTTACCATTTCAGCTC-GT
1 AGAGCTTACTGTTTCAGCTCAAT
**
13390611 ATGAGCTTACTG-TTCAGCTTGAT
1 A-GAGCTTACTGTTTCAGCTCAAT
* *
13390634 AAAGCTTACTGTTTTAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
13390657 AGAGCTTACTGTT
1 AGAGCTTACTGTT
13390670 CATCAGCCCA
Statistics
Matches: 64, Mismatches: 14, Indels: 7
0.75 0.16 0.08
Matches are distributed among these distances:
22 17 0.27
23 39 0.61
24 8 0.12
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:13402197 original size:27 final size:27
Alignment explanation
Indices: 13402167--13402370 Score: 232
Period size: 27 Copynumber: 7.6 Consensus size: 27
13402157 ATATTGAGTC
* * *
13402167 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
*
13402194 CGCACACTTAGTGCTACGTAATC-AAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
13402220 CGCACACTTAGTGCTACATAATCAATCT
1 CGCACACTTAGTGCTACATAATCAA-AT
* ** *
13402248 CGCACACTTAGTGCCACATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
** **
13402275 CGCACACTTAGTGC-ATCATTTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
13402302 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
13402329 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
13402356 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
13402371 GTACAATTTA
Statistics
Matches: 155, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 25 0.16
27 106 0.68
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:13410255 original size:26 final size:27
Alignment explanation
Indices: 13410200--13410375 Score: 180
Period size: 26 Copynumber: 6.6 Consensus size: 27
13410190 ATATTGAGTC
* *
13410200 CGCACACTCCAGTGCTA-TTAATCAACT
1 CGCACACT-TAGTGCTACATAATCAACT
*
13410227 CGCACACTTAGTGCTACGTAATCAA-T
1 CGCACACTTAGTGCTACATAATCAACT
13410253 CGCACACTTAGTGCTACATAATCAATCT
1 CGCACACTTAGTGCTACATAATCAA-CT
* ** *
13410281 CGCACACTTAGTGCCACATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
13410308 CGCACACTTAGTGC-ATCAT-TTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
13410334 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
13410361 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
13410376 GTCAAATCAC
Statistics
Matches: 130, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
26 55 0.42
27 52 0.40
28 23 0.18
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:13410312 original size:81 final size:80
Alignment explanation
Indices: 13410221--13410374 Score: 204
Period size: 81 Copynumber: 1.9 Consensus size: 80
13410211 GTGCTATTAA
* * *
13410221 TCAACTCGCACACTTAGTGC-TACGTAATCA-ATCGCACACTTAGTGCTACATAATCAATCTCGC
1 TCAACTCGCACACTTAGTGCAT-CAT-ATCATATCGCACACTTAGTGCAACATAATCAA-ATCGC
13410284 ACACTTAGTGCCACATGG
63 ACACTTAGTGCCACATGG
* * * *
13410302 TCAATTCGCACACTTAGTGCATCATTTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACA
1 TCAACTCGCACACTTAGTGCATCATATCATATCGCACACTTAGTGCAACATAATCAAATCGCACA
13410367 CTTAGTGC
66 CTTAGTGC
13410375 TGTCAAATCA
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
80 18 0.28
81 45 0.70
82 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCATCATATCATATCGCACACTTAGTGCAACATAATCAAATCGCACA
CTTAGTGCCACATGG
Found at i:13410358 original size:53 final size:54
Alignment explanation
Indices: 13410200--13410375 Score: 200
Period size: 53 Copynumber: 3.3 Consensus size: 54
13410190 ATATTGAGTC
* * * * *
13410200 CGCACACTCCAGTGCTA-TTAATCAA-CTCGCACACTTAGTGCTACGTAATCAAT
1 CGCACACT-TAGTGCTACATAATCAATCTCGCACACTTAGTGCAACATAGTCAAT
* *
13410253 CGCACACTTAGTGCTACATAATCAATCTCGCACACTTAGTGCCACATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAATCTCGCACACTTAGTGCAACATAGTCAA-T
* *
13410308 CGCACACTTAGTGC-ATCAT-TTC-ATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAATCTCGCACACTTAGTGCAACATAGTC-AAT
13410361 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
13410376 GTCAAATCAC
Statistics
Matches: 107, Mismatches: 10, Indels: 11
0.84 0.08 0.09
Matches are distributed among these distances:
52 7 0.07
53 54 0.50
54 28 0.26
55 18 0.17
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAATCTCGCACACTTAGTGCAACATAGTCAAT
Found at i:13429148 original size:13 final size:13
Alignment explanation
Indices: 13429130--13429193 Score: 110
Period size: 13 Copynumber: 4.9 Consensus size: 13
13429120 ACACTCAAAT
13429130 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
13429143 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
* *
13429156 TTCTAAAAAACAC
1 TTCTCAAAAGCAC
13429169 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
13429182 TTCTCAAAAGCA
1 TTCTCAAAAGCA
13429194 ATGAAGAACT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 47 1.00
ACGTcount: A:0.42, C:0.28, G:0.06, T:0.23
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:13429262 original size:34 final size:34
Alignment explanation
Indices: 13429219--13429286 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
13429209 TTAATTCATT
13429219 TGGTTTTCAGTTTAACCCTAACACATAAAACCAA
1 TGGTTTTCAGTTTAACCCTAACACATAAAACCAA
13429253 TGGTTTTCAGTTTAACCCTAACACATAAAACCAA
1 TGGTTTTCAGTTTAACCCTAACACATAAAACCAA
13429287 AAGTTCATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (34 bp):
TGGTTTTCAGTTTAACCCTAACACATAAAACCAA
Found at i:13429372 original size:24 final size:24
Alignment explanation
Indices: 13429345--13429391 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
13429335 AAAAGTCTAG
13429345 ACCCATTAAAATTTAAAACCCAAT
1 ACCCATTAAAATTTAAAACCCAAT
* *
13429369 ACCCGTTAATATTTAAAACCCAA
1 ACCCATTAAAATTTAAAACCCAA
13429392 ATTCATAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.47, C:0.26, G:0.02, T:0.26
Consensus pattern (24 bp):
ACCCATTAAAATTTAAAACCCAAT
Found at i:13433219 original size:23 final size:22
Alignment explanation
Indices: 13433181--13433223 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
13433171 AAATATAATT
13433181 ATTTTTATAATATTTTAAATAC
1 ATTTTTATAATATTTTAAATAC
*
13433203 ATTTTATATAATTTTTTAAAT
1 ATTTT-TATAATATTTTAAAT
13433224 TTAAATTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTTTTATAATATTTTAAATAC
Found at i:13443438 original size:2 final size:2
Alignment explanation
Indices: 13443431--13443462 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
13443421 TGCTATAGTG
13443431 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13443463 TACAAATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:13448499 original size:2 final size:2
Alignment explanation
Indices: 13448494--13448534 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
13448484 ATACTTACAA
*
13448494 AC AC AC AC AC AC AC AC AC AC AA AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
13448535 TATATATACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.54, C:0.46, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:13449098 original size:21 final size:21
Alignment explanation
Indices: 13449037--13449098 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 21
13449027 AGAGTTGAAC
* * *
13449037 AGAAGCTCATAGGAGCTGAAT
1 AGAAGCTCAAAAGAGCTAAAT
* * *
13449058 AGAAACCCATAAAG-GTTAAAT
1 AGAAGCTCA-AAAGAGCTAAAT
13449079 AGAAGCTCAAAAGAGCTAAA
1 AGAAGCTCAAAAGAGCTAAA
13449099 CGAAAAGCCA
Statistics
Matches: 30, Mismatches: 9, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
20 4 0.13
21 24 0.80
22 2 0.07
ACGTcount: A:0.48, C:0.15, G:0.21, T:0.16
Consensus pattern (21 bp):
AGAAGCTCAAAAGAGCTAAAT
Found at i:13451216 original size:162 final size:162
Alignment explanation
Indices: 13451015--13451343 Score: 500
Period size: 162 Copynumber: 2.0 Consensus size: 162
13451005 TCAACACAGT
* ** * *
13451015 TAAAC-TTTACTTACTTGTCTAAAACCACATTTTTCAAACATATAAATATAATTTCACAATATTA
1 TAAACATTTACTTACTTATCTAAAACCACAAATTTCAAACATAAAAATATAAATTCACAATATTA
*
13451079 TACTTGATTTAATTTCAATAAATTCAATTAAACATAAAATAAGTGTCTACAAAATAATTTTCATA
66 TACTCGATTTAATTTCAATAAATTCAATTAAACATAAAATAAGTGTCTACAAAA-AATTTTCATA
*
13451144 ATCTTTCAACCGTTTCAATATTTTAAGTTTGTA
130 ATCTTTCAACCGTTTCAATATTTTAAGCTTGTA
* *
13451177 TCAACATTTACTTTCTTATCT-AAACCACAAATTTCAAACATAAAAATATAAATTCACAATATTA
1 TAAACATTTACTTACTTATCTAAAACCACAAATTTCAAACATAAAAATATAAATTCACAATATTA
* * *
13451241 TACTCGATTTAATTTCAGTAAATTCAATTAAACATAAAATAATTGTCTACAAAAGATTTTCATAA
66 TACTCGATTTAATTTCAATAAATTCAATTAAACATAAAATAAGTGTCTACAAAAAATTTTCATAA
* **
13451306 TCTTTCAGCCGTTTTGATATTTTAAGCTTGTA
131 TCTTTCAACCGTTTCAATATTTTAAGCTTGTA
13451338 TAAACA
1 TAAACA
13451344 CTTATTAACT
Statistics
Matches: 150, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
161 43 0.29
162 94 0.63
163 13 0.09
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39
Consensus pattern (162 bp):
TAAACATTTACTTACTTATCTAAAACCACAAATTTCAAACATAAAAATATAAATTCACAATATTA
TACTCGATTTAATTTCAATAAATTCAATTAAACATAAAATAAGTGTCTACAAAAAATTTTCATAA
TCTTTCAACCGTTTCAATATTTTAAGCTTGTA
Found at i:13454391 original size:22 final size:23
Alignment explanation
Indices: 13454344--13454393 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
13454334 ATATTTTTAC
*
13454344 TTTATAAATTAGTTTTTAATTAT
1 TTTATAAATTAGTTTTGAATTAT
*
13454367 TTTATAATTTATGTTTTGAATT-T
1 TTTATAAATTA-GTTTTGAATTAT
13454390 TTTA
1 TTTA
13454394 AATATACTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (23 bp):
TTTATAAATTAGTTTTGAATTAT
Found at i:13454844 original size:25 final size:25
Alignment explanation
Indices: 13454816--13454868 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
13454806 CCTTACTCAA
*
13454816 ACAACACTTGGGATAACAAGTTAGG
1 ACAACACTTGGGACAACAAGTTAGG
* * *
13454841 ACAACAGTTGGGACAATATGTTAGG
1 ACAACACTTGGGACAACAAGTTAGG
13454866 ACA
1 ACA
13454869 GTTAAAGCTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.21
Consensus pattern (25 bp):
ACAACACTTGGGACAACAAGTTAGG
Found at i:13455771 original size:27 final size:27
Alignment explanation
Indices: 13455742--13455970 Score: 192
Period size: 27 Copynumber: 8.5 Consensus size: 27
13455732 GAATACTTTA
* * *
13455742 GTTTACCAAATCACCAAAATACCCCTA
1 GTTTACAAAATTACCAAAATACCCCTG
** *
13455769 GTTTGTAAAATTACCAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTG
*
13455796 GTTTACAAAATTACCAAAATACCCCCG
1 GTTTACAAAATTACCAAAATACCCCTG
** *
13455823 GTTTGTAAAATTA-CAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTG
*
13455849 GTTTACAAAATTACCAAAATACCACTG
1 GTTTACAAAATTACCAAAATACCCCTG
** * * *
13455876 GTTTGTAAAATTACCGAAATACCCTTA
1 GTTTACAAAATTACCAAAATACCCCTG
** **
13455903 GTTTGTAAAATTACTGAAATA-CCCTCG
1 GTTTACAAAATTACCAAAATACCCCT-G
* ** * *
13455930 ATTTGTAAAATTACCAAAGTACCCCTA
1 GTTTACAAAATTACCAAAATACCCCTG
* *
13455957 ATTTACAGAATTAC
1 GTTTACAAAATTAC
13455971 TGTTTTACCC
Statistics
Matches: 164, Mismatches: 35, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
26 25 0.15
27 135 0.82
28 4 0.02
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
GTTTACAAAATTACCAAAATACCCCTG
Found at i:13455814 original size:54 final size:54
Alignment explanation
Indices: 13455742--13455953 Score: 284
Period size: 54 Copynumber: 3.9 Consensus size: 54
13455732 GAATACTTTA
* * *
13455742 GTTTACCAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
*
13455796 GTTTACAAAATTACCAAAATACCCCCGGTTTGTAAAATTA-CAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
* * *
13455849 GTTTACAAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTTA
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
** ** * *
13455903 GTTTGTAAAATTACTGAAATA-CCCTCGATTTGTAAAATTACCAAAGTACCC
1 GTTTACAAAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCC
13455954 CTAATTTACA
Statistics
Matches: 140, Mismatches: 16, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
53 54 0.39
54 86 0.61
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.29
Consensus pattern (54 bp):
GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
Found at i:13455868 original size:80 final size:79
Alignment explanation
Indices: 13455756--13455953 Score: 243
Period size: 80 Copynumber: 2.5 Consensus size: 79
13455746 ACCAAATCAC
* *
13455756 CAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCC
1 CAAAATACCCTTGGTTTGTAAAATTACCAAAATACCC-TGGTTTACAAAATTACCAAAATACCCC
*
13455821 CGGTTTGTAAAATTA
65 CAGTTTGTAAAATTA
** ** * *
13455836 CAAAATACCCTTGGTTTACAAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCT
1 CAAAATACCCTTGGTTTGTAAAATTACCAAAATACC-CTGGTTTACAAAATTACCAAAATACCCC
*
13455901 TAGTTTGTAAAATTA
65 CAGTTTGTAAAATTA
* * * *
13455916 CTGAAATACCCTCGATTTGTAAAATTACCAAAGTACCC
1 C-AAAATACCCTTGGTTTGTAAAATTACCAAAATACCC
13455954 CTAATTTACA
Statistics
Matches: 100, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
80 70 0.70
81 30 0.30
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (79 bp):
CAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTGGTTTACAAAATTACCAAAATACCCCC
AGTTTGTAAAATTA
Found at i:13455935 original size:107 final size:108
Alignment explanation
Indices: 13455742--13455953 Score: 300
Period size: 107 Copynumber: 2.0 Consensus size: 108
13455732 GAATACTTTA
* * *
13455742 GTTTACCAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAAT
1 GTTTACAAAATCACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCTTAGTTTACAAAAT
*
13455807 TACCAAAATACCCCCGGTTTGTAAAATTA-CAAAATACCCTTG
66 TACCAAAATACCCCCGATTTGTAAAATTACCAAAATACCCTTG
* * * **
13455849 GTTTACAAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTTAGTTTGTAAAAT
1 GTTTACAAAATCACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCTTAGTTTACAAAAT
** * *
13455914 TACTGAAATACCCTCGATTTGTAAAATTACCAAAGTACCC
66 TACCAAAATACCCCCGATTTGTAAAATTACCAAAATACCC
13455954 CTAATTTACA
Statistics
Matches: 91, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
107 82 0.90
108 9 0.10
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.29
Consensus pattern (108 bp):
GTTTACAAAATCACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCTTAGTTTACAAAAT
TACCAAAATACCCCCGATTTGTAAAATTACCAAAATACCCTTG
Found at i:13456315 original size:27 final size:27
Alignment explanation
Indices: 13455992--13456307 Score: 438
Period size: 27 Copynumber: 11.7 Consensus size: 27
13455982 CAATTGACAA
*
13455992 AATTATTGAAATACTCC-TGTAGGGTAG
1 AATTACTGAAATAC-CCTTGTAGGGTAG
*
13456019 AATTACCGAAATA-CCTCTGTAGGGTAG
1 AATTACTGAAATACCCT-TGTAGGGTAG
*
13456046 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
13456073 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
13456100 AATTACCGGAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
13456127 AAATACTGAAATACCCATTGTAGGGTAG
1 AATTACTGAAATACCC-TTGTAGGGTAG
* *
13456155 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
13456182 AATTAATGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
13456209 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
13456236 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
13456263 AATTACTAAAATACCCTTGTAAGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
13456290 AATTACCGAGATACCCTT
1 AATTACTGAAATACCCTT
13456308 TTGGGGTAAA
Statistics
Matches: 261, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
25 2 0.01
27 231 0.89
28 28 0.11
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.28
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:13456564 original size:25 final size:25
Alignment explanation
Indices: 13456526--13456595 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
13456516 AGGAAGTGCT
*
13456526 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
13456551 AATAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
13456576 AAAAGGGCTTTACCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
13456596 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:13457716 original size:14 final size:14
Alignment explanation
Indices: 13457697--13457726 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
13457687 TTGAATAAAA
13457697 TTATGGATCTATTG
1 TTATGGATCTATTG
13457711 TTATGGATCTATTG
1 TTATGGATCTATTG
13457725 TT
1 TT
13457727 GAATAAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.07, G:0.20, T:0.53
Consensus pattern (14 bp):
TTATGGATCTATTG
Found at i:13468468 original size:26 final size:26
Alignment explanation
Indices: 13468439--13468491 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13468429 TTTACAGTTT
13468439 TACCCCTAAGAGTTAAATT-ACCGAAA
1 TACCCCT-AGAGTTAAATTGACCGAAA
* *
13468465 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGTTAAATTGACCGAAA
13468491 T
1 T
13468492 GCATGTTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (26 bp):
TACCCCTAGAGTTAAATTGACCGAAA
Found at i:13474742 original size:15 final size:15
Alignment explanation
Indices: 13474719--13474761 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
13474709 GTTATCGTGA
*
13474719 TATTACTGTATCTGT
1 TATTTCTGTATCTGT
13474734 TATTTCTGTATCTG-
1 TATTTCTGTATCTGT
*
13474748 TATTT-TGTTTCTGT
1 TATTTCTGTATCTGT
13474762 GATTGGGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 7 0.28
14 5 0.20
15 13 0.52
ACGTcount: A:0.14, C:0.12, G:0.14, T:0.60
Consensus pattern (15 bp):
TATTTCTGTATCTGT
Found at i:13477416 original size:18 final size:19
Alignment explanation
Indices: 13477393--13477444 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 19
13477383 TTGAAATGGC
13477393 ATGATATGTGAAATAG-AA
1 ATGATATGTGAAATAGAAA
* *
13477411 ATGATATAGTG-GATTGAAA
1 ATGATAT-GTGAAATAGAAA
*
13477430 ATGAAATGTGAAATA
1 ATGATATGTGAAATA
13477445 TGTTGTGAGC
Statistics
Matches: 26, Mismatches: 5, Indels: 5
0.72 0.14 0.14
Matches are distributed among these distances:
18 13 0.50
19 13 0.50
ACGTcount: A:0.48, C:0.00, G:0.23, T:0.29
Consensus pattern (19 bp):
ATGATATGTGAAATAGAAA
Found at i:13482801 original size:22 final size:23
Alignment explanation
Indices: 13482770--13482813 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
13482760 TTAAGTCCTC
* *
13482770 AAATTTTCATTTTG-ATTTTTTA
1 AAATTATCATTTAGTATTTTTTA
13482792 AAATTATCATTTAGTATTTTTT
1 AAATTATCATTTAGTATTTTTT
13482814 TATATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (23 bp):
AAATTATCATTTAGTATTTTTTA
Found at i:13482842 original size:18 final size:18
Alignment explanation
Indices: 13482810--13482853 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
13482800 ATTTAGTATT
*
13482810 TTTTTATATATTTTTAAGA
1 TTTTTA-ATAATTTTAAGA
* *
13482829 TTTTTAATAATTTTTAGT
1 TTTTTAATAATTTTAAGA
13482847 TTTTTAA
1 TTTTTAA
13482854 GATTATTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (18 bp):
TTTTTAATAATTTTAAGA
Found at i:13482851 original size:19 final size:20
Alignment explanation
Indices: 13482801--13482873 Score: 53
Period size: 20 Copynumber: 3.6 Consensus size: 20
13482791 AAAATTATCA
*
13482801 TTTAGTATTTTTTTATATATT
1 TTTAGT-TTTTTTAATATATT
*
13482822 TTTAAG-ATTTTTAATA-ATT
1 TTT-AGTTTTTTTAATATATT
*
13482841 TTTAG-TTTTTTAAGATTATT
1 TTTAGTTTTTTTAATA-TATT
* *
13482861 TTGAATTTTTTTA
1 TTTAGTTTTTTTA
13482874 GAGGGATCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
18 10 0.24
19 6 0.14
20 14 0.33
21 10 0.24
22 2 0.05
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (20 bp):
TTTAGTTTTTTTAATATATT
Found at i:13484402 original size:39 final size:39
Alignment explanation
Indices: 13484359--13484441 Score: 157
Period size: 39 Copynumber: 2.1 Consensus size: 39
13484349 TTCTCTTCTC
*
13484359 AAATAGAAAATGGCACAATTGTTATTCTGGAAGTTGTGT
1 AAATAGAAAATGGCACAATCGTTATTCTGGAAGTTGTGT
13484398 AAATAGAAAATGGCACAATCGTTATTCTGGAAGTTGTGT
1 AAATAGAAAATGGCACAATCGTTATTCTGGAAGTTGTGT
13484437 AAATA
1 AAATA
13484442 ATCTCTCTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (39 bp):
AAATAGAAAATGGCACAATCGTTATTCTGGAAGTTGTGT
Found at i:13486676 original size:19 final size:21
Alignment explanation
Indices: 13486637--13486679 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
13486627 GGAAACTTAT
13486637 AAGGTTAGACTTCTAGAAAAA
1 AAGGTTAGACTTCTAGAAAAA
*
13486658 AAGGTTATACTT-T-GAAAAA
1 AAGGTTAGACTTCTAGAAAAA
13486677 AAG
1 AAG
13486680 TAATGATTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.43
20 1 0.05
21 11 0.52
ACGTcount: A:0.49, C:0.07, G:0.19, T:0.26
Consensus pattern (21 bp):
AAGGTTAGACTTCTAGAAAAA
Found at i:13488028 original size:18 final size:19
Alignment explanation
Indices: 13487997--13488039 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
13487987 ATGCAAAACC
*
13487997 ATCCAAAAAACACAA-TAA
1 ATCCAAAAAACACAAGAAA
**
13488015 ATCCAAAATCCACAAGAAA
1 ATCCAAAAAACACAAGAAA
13488034 ATCCAA
1 ATCCAA
13488040 GTCCAAAACC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.60, C:0.26, G:0.02, T:0.12
Consensus pattern (19 bp):
ATCCAAAAAACACAAGAAA
Found at i:13494436 original size:19 final size:18
Alignment explanation
Indices: 13494403--13494441 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
13494393 AATAAATCCA
*
13494403 AAGTCCAAAAGAAAGTCC
1 AAGTCCAAAACAAAGTCC
13494421 AAGTCCAAAACCAAAGTCC
1 AAGTCCAAAA-CAAAGTCC
13494440 AA
1 AA
13494442 AGCAACTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.51, C:0.26, G:0.13, T:0.10
Consensus pattern (18 bp):
AAGTCCAAAACAAAGTCC
Found at i:13495041 original size:59 final size:59
Alignment explanation
Indices: 13494949--13495074 Score: 207
Period size: 59 Copynumber: 2.1 Consensus size: 59
13494939 ATGCATATGA
* *
13494949 TATGGCATACAGAACATAATTTCAGTAAGCATGCTTTACATACGGATAGGAATCAGAAG
1 TATGGCATACAGAACATAATTTCAGTAAGCATGCTTTACATACGAATAAGAATCAGAAG
* * *
13495008 TATGGCATATAGAACATAATTTCAGTAAGCATGCTTTACATGCGAATAAGAATTAGAAG
1 TATGGCATACAGAACATAATTTCAGTAAGCATGCTTTACATACGAATAAGAATCAGAAG
13495067 TATGGCAT
1 TATGGCAT
13495075 GTTTATCATG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 62 1.00
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (59 bp):
TATGGCATACAGAACATAATTTCAGTAAGCATGCTTTACATACGAATAAGAATCAGAAG
Done.