Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 46 of 325
Found at i:13804353 original size:38 final size:38
Alignment explanation
Indices: 13804200--13804353 Score: 86
Period size: 38 Copynumber: 4.0 Consensus size: 38
13804190 TCTTTAAAAT
* * * *
13804200 TAATTTTAAAATTAATAATTTATAAAAATTAT--ATTTAA
1 TAATTTAAAAATT-ATAATTTA-AAATATTATAAAATAAA
*
13804238 -AATTTAAAAA--AT-ATTTAAAATATTATAAAAAATAA
1 TAATTTAAAAATTATAATTTAAAATATTATAAAATA-AA
** * * * ***
13804273 TAAATTTGAAAGGTAATATCTTTAAAAATAATATATTTTAAA
1 T-AATTT-AAAAATTATA-ATTT-AAAATATTATAAAATAAA
13804315 TAATTTAAAAATTATAATTTAAAATATTATAAAATAAA
1 TAATTTAAAAATTATAATTTAAAATATTATAAAATAAA
13804353 T
1 T
13804354 TGAAAAAATT
Statistics
Matches: 84, Mismatches: 21, Indels: 22
0.66 0.17 0.17
Matches are distributed among these distances:
32 8 0.10
33 5 0.06
34 3 0.04
35 2 0.02
37 14 0.17
38 18 0.21
39 3 0.04
40 9 0.11
41 5 0.06
42 6 0.07
43 11 0.13
ACGTcount: A:0.56, C:0.01, G:0.02, T:0.41
Consensus pattern (38 bp):
TAATTTAAAAATTATAATTTAAAATATTATAAAATAAA
Found at i:13804359 original size:21 final size:20
Alignment explanation
Indices: 13804333--13804382 Score: 73
Period size: 21 Copynumber: 2.5 Consensus size: 20
13804323 AAATTATAAT
*
13804333 TTAAAATATTATAAAATAAA
1 TTAAAATATTATAAAACAAA
*
13804353 TTGAAAAAATTATAAAACAAA
1 TT-AAAATATTATAAAACAAA
13804374 TTAAAATAT
1 TTAAAATAT
13804383 ACATTTAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 8 0.31
21 18 0.69
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (20 bp):
TTAAAATATTATAAAACAAA
Found at i:13804472 original size:21 final size:20
Alignment explanation
Indices: 13804448--13804514 Score: 68
Period size: 20 Copynumber: 3.2 Consensus size: 20
13804438 ATTTAAATGT
13804448 TTTATATTATTAAAAAATATA
1 TTTA-ATTATTAAAAAATATA
13804469 TTTAA-TATTTAAAAAATACTA
1 TTTAATTA-TTAAAAAATA-TA
13804490 TTTAAAATT-TTAAAAAATA-A
1 TTT--AATTATTAAAAAATATA
13804510 TTTAA
1 TTTAA
13804515 AAATAATATT
Statistics
Matches: 41, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
18 2 0.05
19 2 0.05
20 15 0.37
21 9 0.22
22 10 0.24
23 2 0.05
24 1 0.02
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTAATTATTAAAAAATATA
Found at i:13804472 original size:137 final size:136
Alignment explanation
Indices: 13804237--13804543 Score: 333
Period size: 137 Copynumber: 2.3 Consensus size: 136
13804227 ATTATATTTA
* * *
13804237 AAATTTAAAA-AATATTTAAAATATTATAAAA-AATAATAAATTTGAAAGGTAATATCTTTAAAA
1 AAATTAAAAATAACATTTAAAATATTATAAAATAATAATAAATTTAAAAGGTAATATCTTTAAAA
* *
13804300 ATAATATATTTTAAATAATTTAAAAATTATAATTTAAAATATTATAAAATA-AATTGAAAAAATT
66 ATAATATATTTTAAATAATTTAAAAAATATAATTTAAAAT-TTAAAAAATACAATTGAAAAAATT
*
13804364 ATAAAAC
130 AAAAAAC
*
13804371 AAATT-AAAATATACATTTAAAATATTATAAAACTAATAATAAATTTAAAAGGTCATATCTTTAA
1 AAATTAAAAATA-ACATTTAAAATATTATAAAA-TAATAATAAATTTAAAAGGTAATATCTTTAA
* * * * * *
13804435 AATATTTAA-ATGTTTTATATTA-TTAAAAAATAT-ATTTAATATTTAAAAAATACTATTTAAAA
64 AA-A--TAATATATTTTAAATAATTTAAAAAATATAATTTAAAATTTAAAAAATACAATTGAAAA
** *
13804497 TTTTAAAAAAT
126 AATTAAAAAAC
* *
13804508 AATTTAAAAATAATATTTAAAAT-TTATAAAAATAAT
1 AAATTAAAAATAACATTTAAAATATTAT-AAAATAAT
13804544 TTCAAAAATA
Statistics
Matches: 146, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
133 4 0.03
134 6 0.04
135 19 0.13
136 17 0.12
137 70 0.48
138 17 0.12
139 10 0.07
140 3 0.02
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (136 bp):
AAATTAAAAATAACATTTAAAATATTATAAAATAATAATAAATTTAAAAGGTAATATCTTTAAAA
ATAATATATTTTAAATAATTTAAAAAATATAATTTAAAATTTAAAAAATACAATTGAAAAAATTA
AAAAAC
Found at i:13804480 original size:20 final size:21
Alignment explanation
Indices: 13804457--13804579 Score: 101
Period size: 22 Copynumber: 5.6 Consensus size: 21
13804447 TTTTATATTA
*
13804457 TTAAAAAATATATTTAATA-T
1 TTAAAAAATATATTTAAAATT
13804477 TTAAAAAATACTATTTAAAATT
1 TTAAAAAATA-TATTTAAAATT
13804499 TTAAAAAATA-ATTTAAAAATAAT
1 TTAAAAAATATATTT-AAAAT--T
* * *
13804522 ATT-TAAAATTTA-TAAAAATAAT
1 -TTAAAAAATATATTTAAAAT--T
13804544 TTCAAAAATATATATTTAAAATT
1 TT-AAAAA-ATATATTTAAAATT
13804567 TTAAAAAATATAT
1 TTAAAAAATATAT
13804580 ATTATAAAAT
Statistics
Matches: 85, Mismatches: 7, Indels: 21
0.75 0.06 0.19
Matches are distributed among these distances:
20 14 0.16
21 21 0.25
22 24 0.28
23 13 0.15
24 7 0.08
25 6 0.07
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
TTAAAAAATATATTTAAAATT
Found at i:13804525 original size:33 final size:34
Alignment explanation
Indices: 13804475--13804590 Score: 155
Period size: 33 Copynumber: 3.4 Consensus size: 34
13804465 TATATTTAAT
*
13804475 ATTTAAAAAATACTATTTAAAATTTTAAAAAATA
1 ATTTAAAAAATAATATTTAAAATTTTAAAAAATA
13804509 ATTT-AAAAATAATATTTAAAA-TTTATAAAAATA
1 ATTTAAAAAATAATATTTAAAATTTTA-AAAAATA
*
13804542 ATTTCAAAAATATATATTTAAAATTTTAAAAAATA
1 ATTTAAAAAATA-ATATTTAAAATTTTAAAAAATA
*
13804577 TATATTATAAAATA
1 -AT-TTAAAAAATA
13804591 TTTCAAATAT
Statistics
Matches: 73, Mismatches: 3, Indels: 9
0.86 0.04 0.11
Matches are distributed among these distances:
32 4 0.05
33 27 0.37
34 11 0.15
35 17 0.23
36 6 0.08
37 8 0.11
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (34 bp):
ATTTAAAAAATAATATTTAAAATTTTAAAAAATA
Found at i:13804621 original size:23 final size:23
Alignment explanation
Indices: 13804548--13804621 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
13804538 AATAATTTCA
* **
13804548 AAAATATATATTTAAAATTTTAA
1 AAAATATATATTTTAAATTTTTT
* * *
13804571 AAAATATATATTATAAAATATTT
1 AAAATATATATTTTAAATTTTTT
* *
13804594 CAAATATACATTTTAAATTTTTT
1 AAAATATATATTTTAAATTTTTT
13804617 AAAAT
1 AAAAT
13804622 TAATAATAAA
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (23 bp):
AAAATATATATTTTAAATTTTTT
Found at i:13804635 original size:48 final size:49
Alignment explanation
Indices: 13804536--13804631 Score: 112
Period size: 48 Copynumber: 2.1 Consensus size: 49
13804526 AAAATTTATA
* *
13804536 AAAATAATTTCAAAAATATATATTTAAAATTTTAAAAAATATATATTAT
1 AAAATAATTTCAAAAATACATATTTAAAATTTTAAAAAATATATATAAT
* **
13804585 AAAAT-ATTTCAAATATACAT-TTT-AAATTTTTTAAAAT-TA-ATAAT
1 AAAATAATTTCAAAAATACATATTTAAAATTTTAAAAAATATATATAAT
13804629 AAA
1 AAA
13804632 TAAATAAATA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
44 7 0.17
45 2 0.05
46 12 0.29
47 3 0.07
48 13 0.31
49 5 0.12
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (49 bp):
AAAATAATTTCAAAAATACATATTTAAAATTTTAAAAAATATATATAAT
Found at i:13805869 original size:14 final size:14
Alignment explanation
Indices: 13805852--13805894 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
13805842 TTAAAAATGT
13805852 ATTTTGAAAAATAA
1 ATTTTGAAAAATAA
*
13805866 ATTTTGAGCAAATAA
1 ATTTTGA-AAAATAA
13805881 ATTTT-AACAAATAA
1 ATTTTGAA-AAATAA
13805895 TAAAATTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 14 0.56
15 11 0.44
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (14 bp):
ATTTTGAAAAATAA
Found at i:13805878 original size:15 final size:14
Alignment explanation
Indices: 13805860--13805894 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
13805850 GTATTTTGAA
*
13805860 AAATAAATTTTGAGC
1 AAATAAATTTT-AAC
13805875 AAATAAATTTTAAC
1 AAATAAATTTTAAC
13805889 AAATAA
1 AAATAA
13805895 TAAAATTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (14 bp):
AAATAAATTTTAAC
Found at i:13811128 original size:32 final size:32
Alignment explanation
Indices: 13811092--13811160 Score: 93
Period size: 32 Copynumber: 2.2 Consensus size: 32
13811082 ATTAGTTAAC
*
13811092 AAATAACTTTTAACAGATAAAAAATCTTAGAA
1 AAATAACTTTTAACAGATAAAAAATCTTAAAA
** * *
13811124 AAATATTTTTTAACAGATAACAAATTTTAAAA
1 AAATAACTTTTAACAGATAAAAAATCTTAAAA
13811156 AAATA
1 AAATA
13811161 TTTGTCTAGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.32
Consensus pattern (32 bp):
AAATAACTTTTAACAGATAAAAAATCTTAAAA
Found at i:13811161 original size:32 final size:32
Alignment explanation
Indices: 13811099--13811163 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
13811089 AACAAATAAC
*
13811099 TTTTAACAGATAAAAAATCTTAGAAAAATATT
1 TTTTAACAGATAAAAAATCTTAAAAAAATATT
* *
13811131 TTTTAACAGATAACAAATTTTAAAAAAATATT
1 TTTTAACAGATAAAAAATCTTAAAAAAATATT
13811163 T
1 T
13811164 GTCTAGGTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.52, C:0.06, G:0.05, T:0.37
Consensus pattern (32 bp):
TTTTAACAGATAAAAAATCTTAAAAAAATATT
Found at i:13811230 original size:10 final size:10
Alignment explanation
Indices: 13811183--13811230 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
13811173 TATTGTTTTT
13811183 TAAAATAATTA
1 TAAAA-AATTA
*
13811194 TAAAAAATTG
1 TAAAAAATTA
* *
13811204 TTAAGAATTA
1 TAAAAAATTA
*
13811214 TATAAAATTA
1 TAAAAAATTA
13811224 TAAAAAA
1 TAAAAAA
13811231 ATACAATTTT
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
10 24 0.83
11 5 0.17
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:13813136 original size:20 final size:20
Alignment explanation
Indices: 13813111--13813160 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
13813101 ATCAGTATTC
13813111 TTATCCTGAATTTCAGGATT
1 TTATCCTGAATTTCAGGATT
13813131 TTATCCTGAATTTCAGGATT
1 TTATCCTGAATTTCAGGATT
13813151 TTATCCTGAA
1 TTATCCTGAA
13813161 AAAAATTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (20 bp):
TTATCCTGAATTTCAGGATT
Found at i:13813201 original size:20 final size:20
Alignment explanation
Indices: 13813178--13813229 Score: 86
Period size: 20 Copynumber: 2.5 Consensus size: 20
13813168 AAATCCAAAT
13813178 TAAAATACTGAAATTCAGGA
1 TAAAATACTGAAATTCAGGA
*
13813198 TAAAATCCTGAAATTCAGGA
1 TAAAATACTGAAATTCAGGA
13813218 TAAGAATACTGA
1 TAA-AATACTGA
13813230 TGTGGCATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 22 0.76
21 7 0.24
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.25
Consensus pattern (20 bp):
TAAAATACTGAAATTCAGGA
Found at i:13822295 original size:51 final size:51
Alignment explanation
Indices: 13822224--13822320 Score: 149
Period size: 51 Copynumber: 1.9 Consensus size: 51
13822214 TTATCCATGG
* * * *
13822224 GATGATAAATCATTAATTTTAATTTGAATAGTGTTTATGATTAATTTGCAA
1 GATGATAAATCATCAATTTTAATTTAAATAGTGCTTATGAATAATTTGCAA
*
13822275 GATGATAAATCATCACTTTTAATTTAAATAGTGCTTATGAATAATT
1 GATGATAAATCATCAATTTTAATTTAAATAGTGCTTATGAATAATT
13822321 AATTTGCAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.43
Consensus pattern (51 bp):
GATGATAAATCATCAATTTTAATTTAAATAGTGCTTATGAATAATTTGCAA
Found at i:13823325 original size:23 final size:23
Alignment explanation
Indices: 13823295--13823338 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
13823285 TAAGATAGTA
13823295 AAAAATCCTACAAATTCCTTTCC
1 AAAAATCCTACAAATTCCTTTCC
**
13823318 AAAAATCCTATGAATTCCTTT
1 AAAAATCCTACAAATTCCTTT
13823339 TAGTACTGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.25, G:0.02, T:0.34
Consensus pattern (23 bp):
AAAAATCCTACAAATTCCTTTCC
Found at i:13823415 original size:104 final size:104
Alignment explanation
Indices: 13823230--13823423 Score: 298
Period size: 104 Copynumber: 1.9 Consensus size: 104
13823220 ATCCAAGTAA
* * * * * * *
13823230 CCTTCTAGTACTGCGTGATAATTACTATAGAGTAATCCTATATTTTTTATTTTCTTAAGATAGTA
1 CCTTCTAGTACTGCGCGATAATTACTATAGAATAATCCCAAATGTTTTATTTTCTTAAGACAGCA
13823295 AAAAATCCTACAAATTCCTTTCCAAAAATCCTATGAATT
66 AAAAATCCTACAAATTCCTTTCCAAAAATCCTATGAATT
* * *
13823334 CCTTTTAGTACTGCGCGATAATTACTATAGAATAATCCCAAATGTTTTGTTTTCTTAAGACAGCC
1 CCTTCTAGTACTGCGCGATAATTACTATAGAATAATCCCAAATGTTTTATTTTCTTAAGACAGCA
13823399 AAAAATCCTACAAATTCCTTTCCAA
66 AAAAATCCTACAAATTCCTTTCCAA
13823424 TGATCGATAC
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
104 80 1.00
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (104 bp):
CCTTCTAGTACTGCGCGATAATTACTATAGAATAATCCCAAATGTTTTATTTTCTTAAGACAGCA
AAAAATCCTACAAATTCCTTTCCAAAAATCCTATGAATT
Found at i:13824996 original size:21 final size:22
Alignment explanation
Indices: 13824970--13825026 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
13824960 AAAAGGTATC
*
13824970 TACAAATTAAATC-TCTAAGAT
1 TACAAATCAAATCTTCTAAGAT
*
13824991 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCAAATCTTCTAAGAT
*
13825014 TAC-AATCATATCT
1 TACAAATCAAATCT
13825027 AAGATTGTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 13 0.41
22 8 0.25
23 11 0.34
ACGTcount: A:0.44, C:0.18, G:0.04, T:0.35
Consensus pattern (22 bp):
TACAAATCAAATCTTCTAAGAT
Found at i:13825013 original size:23 final size:21
Alignment explanation
Indices: 13824983--13825026 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 21
13824973 AAATTAAATC
13824983 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC--AATCATATCT
13825006 TCTAAGATTACAATCATATCT
1 TCTAAGATTACAATCATATCT
13825027 AAGATTGTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 10 0.48
23 11 0.52
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (21 bp):
TCTAAGATTACAATCATATCT
Found at i:13825075 original size:19 final size:19
Alignment explanation
Indices: 13825006--13825094 Score: 125
Period size: 17 Copynumber: 4.9 Consensus size: 19
13824996 AATCATATCT
*
13825006 TCTAAGATTACA-ATCATA
1 TCTAAGATTGCATATCATA
*
13825024 TCTAAGATTG--TACCATA
1 TCTAAGATTGCATATCATA
13825041 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
13825058 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
13825077 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
13825095 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
17 31 0.48
18 9 0.14
19 25 0.38
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:13827328 original size:24 final size:24
Alignment explanation
Indices: 13827296--13827403 Score: 92
Period size: 25 Copynumber: 4.4 Consensus size: 24
13827286 CAGCCCGAAA
13827296 GAGCATCCCGTTATTAGCTCTCAT
1 GAGCATCCCGTTATTAGCTCTCAT
* *
13827320 GAGCATCCCGATATTTGGCTCTCAT
1 GAGCATCCCGTTA-TTAGCTCTCAT
* * * **
13827345 GAGCTTCCCGTTATATGGTTCTTGT
1 GAGCATCCCGTTAT-TAGCTCTCAT
* * *
13827370 GAGCTTCCCGTTAATAGCTCTTC-G
1 GAGCATCCCGTTATTAGCTC-TCAT
13827394 GAGCATCCCG
1 GAGCATCCCG
13827404 ATTTGGTTGT
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
24 26 0.38
25 42 0.62
ACGTcount: A:0.18, C:0.28, G:0.21, T:0.33
Consensus pattern (24 bp):
GAGCATCCCGTTATTAGCTCTCAT
Found at i:13827636 original size:25 final size:25
Alignment explanation
Indices: 13827601--13827661 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
13827591 GGCTCTTCGA
* * *
13827601 AGCTTCCCGTTACATGACTCACATG
1 AGCTTCTCGTTACATGACTCAAAAG
* *
13827626 AGCTTCTCGTTATATGGCTCAAAAG
1 AGCTTCTCGTTACATGACTCAAAAG
13827651 AGCTTCTCGTT
1 AGCTTCTCGTT
13827662 TATGTGCTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (25 bp):
AGCTTCTCGTTACATGACTCAAAAG
Found at i:13830743 original size:15 final size:15
Alignment explanation
Indices: 13830723--13830755 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
13830713 TTATAAGGAA
13830723 TTGTAATTCATGGAC
1 TTGTAATTCATGGAC
13830738 TTGTAATTCATGGAC
1 TTGTAATTCATGGAC
13830753 TTG
1 TTG
13830756 ATCCATGATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.42
Consensus pattern (15 bp):
TTGTAATTCATGGAC
Found at i:13831638 original size:55 final size:55
Alignment explanation
Indices: 13831572--13831678 Score: 169
Period size: 55 Copynumber: 1.9 Consensus size: 55
13831562 GTATTCATTG
* * *
13831572 GATGATAAATCATCACTTTTAATTTAAATAATGCTTATGAATAATTAATTTGCAA
1 GATGATAAATCATCACTTTTAATTTAAATAAGGCTCATAAATAATTAATTTGCAA
* *
13831627 GATGATAAATCATCACTTTTAATTTGAATAGGGCTCATAAATAATTAATTTG
1 GATGATAAATCATCACTTTTAATTTAAATAAGGCTCATAAATAATTAATTTG
13831679 TAATCTATAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.39
Consensus pattern (55 bp):
GATGATAAATCATCACTTTTAATTTAAATAAGGCTCATAAATAATTAATTTGCAA
Found at i:13832177 original size:20 final size:20
Alignment explanation
Indices: 13832148--13832186 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
13832138 GAACGAAATC
*
13832148 AGAAACATTT-GGAACATTTA
1 AGAAAAATTTAGGAA-ATTTA
13832168 AGAAAAATTTAGGAAATTT
1 AGAAAAATTTAGGAAATTT
13832187 GAATTGTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.31
Consensus pattern (20 bp):
AGAAAAATTTAGGAAATTTA
Found at i:13833197 original size:38 final size:38
Alignment explanation
Indices: 13833143--13833252 Score: 177
Period size: 38 Copynumber: 2.9 Consensus size: 38
13833133 CAATACACCA
*
13833143 GCAC-AAGCCTGTTAGGCACAGAGCCCGAATAACAATG
1 GCACAAAGCCTGCTAGGCACAGAGCCCGAATAACAATG
* * *
13833180 GCACAAAGCCTGCTAGGCATAGAGCCCAAATAACACTG
1 GCACAAAGCCTGCTAGGCACAGAGCCCGAATAACAATG
13833218 GCACAAAGCCTGCTAGGCACAGAGCCCGAATAACA
1 GCACAAAGCCTGCTAGGCACAGAGCCCGAATAACA
13833253 TTATGCTTCT
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
37 4 0.06
38 62 0.94
ACGTcount: A:0.36, C:0.29, G:0.23, T:0.12
Consensus pattern (38 bp):
GCACAAAGCCTGCTAGGCACAGAGCCCGAATAACAATG
Found at i:13838208 original size:28 final size:28
Alignment explanation
Indices: 13838167--13838223 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
13838157 TTGTCTGTGC
13838167 TATTAAATACGAACAGCTTCCAGTTTTA
1 TATTAAATACGAACAGCTTCCAGTTTTA
* *
13838195 TATTAAATATGAACAGCTTCCGGTTTTA
1 TATTAAATACGAACAGCTTCCAGTTTTA
13838223 T
1 T
13838224 GTTACATTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (28 bp):
TATTAAATACGAACAGCTTCCAGTTTTA
Found at i:13841713 original size:58 final size:58
Alignment explanation
Indices: 13841623--13841739 Score: 218
Period size: 58 Copynumber: 2.0 Consensus size: 58
13841613 TCCCTCACAC
13841623 CAACACTCCACTTAACCACCAGACCACTAGGCCCATTCTGACATTATTTTACAAACAA
1 CAACACTCCACTTAACCACCAGACCACTAGGCCCATTCTGACATTATTTTACAAACAA
13841681 CAACACTCCACTTAACCACCAGACCGA-TAGGCCCATTCTGACATTATTTTACAAACAA
1 CAACACTCCACTTAACCACCAGACC-ACTAGGCCCATTCTGACATTATTTTACAAACAA
13841739 C
1 C
13841740 TCTACTTAAA
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
58 57 0.98
59 1 0.02
ACGTcount: A:0.36, C:0.34, G:0.08, T:0.22
Consensus pattern (58 bp):
CAACACTCCACTTAACCACCAGACCACTAGGCCCATTCTGACATTATTTTACAAACAA
Found at i:13848952 original size:27 final size:27
Alignment explanation
Indices: 13848910--13849014 Score: 160
Period size: 27 Copynumber: 3.9 Consensus size: 27
13848900 GCGAGGCTGC
*
13848910 CAGATATTGTGACAGAGCCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
13848937 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
13848963 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
13848990 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
13849015 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
26 8 0.11
27 63 0.86
28 2 0.03
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:13850640 original size:26 final size:26
Alignment explanation
Indices: 13850610--13850691 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
13850600 TGAAATGCCC
13850610 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
13850636 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
13850662 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
13850688 ATCA
1 ATCA
13850692 ATTTTTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:13851052 original size:12 final size:13
Alignment explanation
Indices: 13851035--13851063 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
13851025 ATATAGTAGC
13851035 AGTTG-AGTAGTT
1 AGTTGAAGTAGTT
13851047 AGTTGAAGTAGTT
1 AGTTGAAGTAGTT
13851060 AGTT
1 AGTT
13851064 AGTTAAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.41
Consensus pattern (13 bp):
AGTTGAAGTAGTT
Found at i:13858861 original size:27 final size:26
Alignment explanation
Indices: 13858818--13858932 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 26
13858808 AGCATGGCTG
* *
13858818 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
* *
13858844 CCACATACAGATATTGTGGCAGAACCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
13858871 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
*
13858898 CCAGAAACAGATATTTGTGGCATG-GCGA
1 CCAG-AACAGATA-TTGTGGCA-GAGCCA
13858926 CCAGAAC
1 CCAGAAC
13858933 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
26 11 0.14
27 41 0.54
28 24 0.32
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:13861652 original size:38 final size:38
Alignment explanation
Indices: 13861608--13861683 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
13861598 TAAATGACTT
13861608 GTATGCCTATAGGTGAATAATGATATAAATGTTTTTAG
1 GTATGCCTATAGGTGAATAATGATATAAATGTTTTTAG
13861646 GTATGCCTATAGGTGAATAATGATATAAATGTTTTTAG
1 GTATGCCTATAGGTGAATAATGATATAAATGTTTTTAG
13861684 TGCATGTTGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.39
Consensus pattern (38 bp):
GTATGCCTATAGGTGAATAATGATATAAATGTTTTTAG
Found at i:13864554 original size:11 final size:11
Alignment explanation
Indices: 13864538--13864564 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
13864528 ATCTACAACA
13864538 TTCAAGAGATT
1 TTCAAGAGATT
13864549 TTCAAGAGATT
1 TTCAAGAGATT
13864560 TTCAA
1 TTCAA
13864565 TTTTGGGGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (11 bp):
TTCAAGAGATT
Found at i:13871348 original size:27 final size:27
Alignment explanation
Indices: 13871311--13871405 Score: 102
Period size: 29 Copynumber: 3.4 Consensus size: 27
13871301 AGCATGGTTG
*
13871311 CCAGAACAGATAAT-GTGACAGAGTCA
1 CCAGAACAGATAATCGTGACAGAGCCA
*
13871337 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATCGTGACAGAGCCA
* * *
13871365 CCAGAACAGATATATATGGGGCAGAGCCA
1 CCAGAACAGATA-AT-CGTGACAGAGCCA
*
13871394 CCAGATCAGATA
1 CCAGAACAGATA
13871406 TTTATTGCAT
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.08
27 16 0.27
28 17 0.28
29 22 0.37
ACGTcount: A:0.39, C:0.22, G:0.24, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATCGTGACAGAGCCA
Found at i:13873090 original size:26 final size:26
Alignment explanation
Indices: 13873028--13873127 Score: 168
Period size: 26 Copynumber: 3.9 Consensus size: 26
13873018 ACAAAAATTC
13873028 TTATCATGAAACATTTACCTAA--CA
1 TTATCATGAAACATTTACCTAACCCA
13873052 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
13873078 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
13873104 TTATCATGGAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
13873128 TGAACATTTA
Statistics
Matches: 73, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
24 22 0.30
26 51 0.70
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:13873134 original size:17 final size:17
Alignment explanation
Indices: 13873112--13873145 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
13873102 CATTATCATG
13873112 GAACATTTACCTAACCT
1 GAACATTTACCTAACCT
13873129 GAACATTTACCTAACCT
1 GAACATTTACCTAACCT
13873146 ATTATCAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.29, G:0.06, T:0.29
Consensus pattern (17 bp):
GAACATTTACCTAACCT
Found at i:13877169 original size:27 final size:26
Alignment explanation
Indices: 13877132--13877226 Score: 118
Period size: 29 Copynumber: 3.5 Consensus size: 26
13877122 AACATGGTTG
* *
13877132 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
13877158 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
13877186 CCAGAACAGATATATATGTGGCAGAGCCA
1 CCAGAACAG--ATA-ATGTGGCAGAGCCA
*
13877215 CCAGATCAGATA
1 CCAGAACAGATA
13877227 TTTATGGCAT
Statistics
Matches: 61, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
26 5 0.08
27 16 0.26
28 15 0.25
29 23 0.38
30 2 0.03
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:13877210 original size:29 final size:28
Alignment explanation
Indices: 13877132--13877248 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 28
13877122 AACATGGTTG
* *
13877132 CCAGAACAGATA-A-TGTGACAGAGTCA
1 CCAGAACAGATATATTGTGGCAGAGCCA
*
13877158 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGA-ACAGATATATTGTGGCAGAGCCA
13877186 CCAGAACAGATATATATGTGGCAGAGCCA
1 CCAGAACAGATATAT-TGTGGCAGAGCCA
* * *
13877215 CCAGATCAGATAT-TTATGGCATAGCCA
1 CCAGAACAGATATATTGTGGCAGAGCCA
*
13877242 CTAGAAC
1 CCAGAAC
13877249 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 9, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
26 5 0.06
27 31 0.40
28 18 0.23
29 24 0.31
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (28 bp):
CCAGAACAGATATATTGTGGCAGAGCCA
Found at i:13878900 original size:26 final size:26
Alignment explanation
Indices: 13878864--13878973 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
13878854 CATGAAATTC
13878864 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
13878890 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
13878916 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
13878942 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
13878968 TTATCA
1 TTATCA
13878974 ATTTGTACCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:13883460 original size:40 final size:40
Alignment explanation
Indices: 13883374--13883512 Score: 113
Period size: 40 Copynumber: 3.5 Consensus size: 40
13883364 TCTAAATACT
* * *
13883374 TGAAAAGTTTGAAAAGGAGGTTACCTGAAAGGGATAACACA
1 TGAAAAGTTTGAAAAGGA-GTTACCTAAAAAGGATAACAAA
* * *
13883415 TGAAAATTTTGAAAAGGA-TATATCTAAAAAGGATATCAAA
1 TGAAAAGTTTGAAAAGGAGT-TACCTAAAAAGGATAACAAA
* * * *
13883455 TGAAAAGGTTGAAAAGGACGTTA-TTCGAAAAGGATATC-AA
1 TGAAAAGTTTGAAAAGGA-GTTACCT-AAAAAGGATAACAAA
* *
13883495 TGAAAAGGTCGAAAAGGA
1 TGAAAAGTTTGAAAAGGA
13883513 AATCAATGAA
Statistics
Matches: 83, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
39 1 0.01
40 51 0.61
41 30 0.36
42 1 0.01
ACGTcount: A:0.47, C:0.07, G:0.24, T:0.22
Consensus pattern (40 bp):
TGAAAAGTTTGAAAAGGAGTTACCTAAAAAGGATAACAAA
Found at i:13883509 original size:24 final size:24
Alignment explanation
Indices: 13883479--13883551 Score: 103
Period size: 24 Copynumber: 3.0 Consensus size: 24
13883469 AGGACGTTAT
13883479 TCGAAAAGGATATCAATGAAAAGG
1 TCGAAAAGGATATCAATGAAAAGG
*
13883503 TCGAAAAGGAAATCAATGAAAAGG
1 TCGAAAAGGATATCAATGAAAAGG
* *
13883527 TCAAAAATGATAGT-AATGAAAAGG
1 TCGAAAAGGATA-TCAATGAAAAGG
13883551 T
1 T
13883552 TGGTATTTCA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
24 43 0.98
25 1 0.02
ACGTcount: A:0.52, C:0.07, G:0.23, T:0.18
Consensus pattern (24 bp):
TCGAAAAGGATATCAATGAAAAGG
Found at i:13892209 original size:82 final size:85
Alignment explanation
Indices: 13892050--13892217 Score: 236
Period size: 82 Copynumber: 2.0 Consensus size: 85
13892040 CTTAAAATTA
* * * * *
13892050 GATTCAATAAGGAATCCATGCATGTACGGTATGACTCTCAATAATATTTTTACAATTTATGGTGA
1 GATTCAATAAGAAACCCATGCATGTACGGTATGACTCCCAATAATAGTTTCACAATTTATGGTGA
13892115 ATTTCTAAAGTCAGAACAGG
66 ATTTCTAAAGTCAGAACAGG
*
13892135 GATTCAATACGAAACCCAT-CATGT-CAGGTATGACTCCCAATAAT-GTTTCACAA-TTATGGTG
1 GATTCAATAAGAAACCCATGCATGTAC-GGTATGACTCCCAATAATAGTTTCACAATTTATGGTG
*
13892196 AATTTCTAAAGTCAGAATAGG
65 AATTTCTAAAGTCAGAACAGG
13892217 G
1 G
13892218 GATCTCGAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
82 29 0.39
83 8 0.11
84 22 0.29
85 16 0.21
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (85 bp):
GATTCAATAAGAAACCCATGCATGTACGGTATGACTCCCAATAATAGTTTCACAATTTATGGTGA
ATTTCTAAAGTCAGAACAGG
Found at i:13892722 original size:49 final size:49
Alignment explanation
Indices: 13892648--13892791 Score: 191
Period size: 49 Copynumber: 2.9 Consensus size: 49
13892638 GCCGAAGCTA
13892648 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG-
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-ACAGT
* * * * * *
13892697 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGATCACAGTTT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCACAG--T
*
13892748 TCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
13892792 TCACAATAGA
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
48 4 0.05
49 38 0.48
51 37 0.47
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (49 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCACAGT
Found at i:13892773 original size:51 final size:49
Alignment explanation
Indices: 13892651--13892791 Score: 176
Period size: 51 Copynumber: 2.8 Consensus size: 49
13892641 GAAGCTATCT
* *
13892651 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCA
* * * * *
13892700 GGTACACGTAGTAGCCTACACTTAGTACTACACACGTGATC-ACAGTTTTCA
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCA
*
13892751 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC
13892792 TCACAATAGA
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
48 4 0.05
49 35 0.46
51 37 0.49
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (49 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCA
Found at i:13895888 original size:38 final size:39
Alignment explanation
Indices: 13895846--13895923 Score: 149
Period size: 38 Copynumber: 2.0 Consensus size: 39
13895836 CAGTTTCTTG
13895846 ATAGCAATCATATCTCAATCATGTTATTCA-TTTGAGTA
1 ATAGCAATCATATCTCAATCATGTTATTCATTTTGAGTA
13895884 ATAGCAATCATATCTCAATCATGTTATTCATTTTGAGTA
1 ATAGCAATCATATCTCAATCATGTTATTCATTTTGAGTA
13895923 A
1 A
13895924 CTAACATTCA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
38 30 0.77
39 9 0.23
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (39 bp):
ATAGCAATCATATCTCAATCATGTTATTCATTTTGAGTA
Found at i:13896051 original size:57 final size:57
Alignment explanation
Indices: 13895987--13896103 Score: 216
Period size: 57 Copynumber: 2.1 Consensus size: 57
13895977 TATAATTATG
* *
13895987 CATGCATCCTATGTTTTCTGGATAGCTTGATTTATCCATTCATCTGCTCGAACAAAT
1 CATGCATCCTATGTTTTCTGGATAGCTTGACTTATCCATTCATCTACTCGAACAAAT
13896044 CATGCATCCTATGTTTTCTGGATAGCTTGACTTATCCATTCATCTACTCGAACAAAT
1 CATGCATCCTATGTTTTCTGGATAGCTTGACTTATCCATTCATCTACTCGAACAAAT
13896101 CAT
1 CAT
13896104 ACTTATGACA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.38
Consensus pattern (57 bp):
CATGCATCCTATGTTTTCTGGATAGCTTGACTTATCCATTCATCTACTCGAACAAAT
Found at i:13898146 original size:49 final size:49
Alignment explanation
Indices: 13898074--13898213 Score: 183
Period size: 49 Copynumber: 2.8 Consensus size: 49
13898064 GCCGAAGCTA
13898074 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG-
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-ACAGT
* * * * * *
13898123 TCTGGTACACGTAGTAGCCTGCACTTAGCACTACACACGTGATCACAGTTT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCACAG--T
*
13898174 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
13898214 ACCTCACAAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
48 4 0.05
49 38 0.50
51 34 0.45
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (49 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCACAGT
Found at i:13901304 original size:39 final size:39
Alignment explanation
Indices: 13901261--13901339 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
13901251 AGTTTTCTTG
13901261 ATAGCAATCATATCTCAATCATGTTATTCATTTTGAGTA
1 ATAGCAATCATATCTCAATCATGTTATTCATTTTGAGTA
13901300 ATAGCAATCATATCTCAATCATGTTATTCATTTTGAGTA
1 ATAGCAATCATATCTCAATCATGTTATTCATTTTGAGTA
13901339 A
1 A
13901340 CTAACATTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.41
Consensus pattern (39 bp):
ATAGCAATCATATCTCAATCATGTTATTCATTTTGAGTA
Found at i:13901467 original size:57 final size:57
Alignment explanation
Indices: 13901403--13901519 Score: 216
Period size: 57 Copynumber: 2.1 Consensus size: 57
13901393 TATAATTATG
* *
13901403 CATGCATCCTATGTTTTCTGGATAGCTTGATTTATCCATTCATCTGCTCGAACAAAT
1 CATGCATCCTATGTTTTCTGGATAGCTTGACTTATCCATTCATCTACTCGAACAAAT
13901460 CATGCATCCTATGTTTTCTGGATAGCTTGACTTATCCATTCATCTACTCGAACAAAT
1 CATGCATCCTATGTTTTCTGGATAGCTTGACTTATCCATTCATCTACTCGAACAAAT
13901517 CAT
1 CAT
13901520 ACTTATGACA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.38
Consensus pattern (57 bp):
CATGCATCCTATGTTTTCTGGATAGCTTGACTTATCCATTCATCTACTCGAACAAAT
Found at i:13903560 original size:49 final size:49
Alignment explanation
Indices: 13903488--13903627 Score: 183
Period size: 49 Copynumber: 2.8 Consensus size: 49
13903478 GCCGAAGCTA
13903488 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG-
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-ACAGT
* * * * * *
13903537 TCTGGTACACGTAGTAGCCTGCACTTAGCACTACACACGTGATCACAGTTT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCACAG--T
*
13903588 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
13903628 ACCTCACAAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
48 4 0.05
49 38 0.50
51 34 0.45
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (49 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCACAGT
Found at i:13906733 original size:19 final size:19
Alignment explanation
Indices: 13906709--13906746 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
13906699 TTTGTAGTAA
13906709 ATATA-TATGATAATTTAAT
1 ATATATTAT-ATAATTTAAT
*
13906728 ATATATTATATATTTTAAT
1 ATATATTATATAATTTAAT
13906747 GAATGAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (19 bp):
ATATATTATATAATTTAAT
Found at i:13908309 original size:14 final size:14
Alignment explanation
Indices: 13908290--13908317 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
13908280 AGACAAAGTA
13908290 TGTTCGTATAATTC
1 TGTTCGTATAATTC
13908304 TGTTCGTATAATTC
1 TGTTCGTATAATTC
13908318 AAATTATGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (14 bp):
TGTTCGTATAATTC
Found at i:13910060 original size:26 final size:26
Alignment explanation
Indices: 13910029--13910090 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
13910019 TTATCCCTAC
* *
13910029 AAAATTTTGATAATTTT-ACCTCTGAT
1 AAAATTTTGACAATTTTGACCT-TAAT
13910055 AAAATTTTGACAATTTTGACCTTAAT
1 AAAATTTTGACAATTTTGACCTTAAT
13910081 AAAATTTTGA
1 AAAATTTTGA
13910091 GAAAATATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 29 0.88
27 4 0.12
ACGTcount: A:0.39, C:0.10, G:0.08, T:0.44
Consensus pattern (26 bp):
AAAATTTTGACAATTTTGACCTTAAT
Found at i:13913071 original size:21 final size:21
Alignment explanation
Indices: 13913045--13913086 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
13913035 TCAAATTGAT
*
13913045 GGCAATTTGAATCCATCAAAA
1 GGCAATATGAATCCATCAAAA
* *
13913066 GGCAATATGGATCCGTCAAAA
1 GGCAATATGAATCCATCAAAA
13913087 TTTAAGCGAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21
Consensus pattern (21 bp):
GGCAATATGAATCCATCAAAA
Found at i:13916675 original size:17 final size:17
Alignment explanation
Indices: 13916638--13916675 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
13916628 TTGAAATGGG
*
13916638 TAATTAATCAAATTAAC
1 TAATTAATCAAATTAAA
13916655 TAATTAATCGAAA-TAAA
1 TAATTAATC-AAATTAAA
13916672 TAAT
1 TAAT
13916676 ATATGTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 16 0.84
18 3 0.16
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (17 bp):
TAATTAATCAAATTAAA
Found at i:13923814 original size:14 final size:14
Alignment explanation
Indices: 13923795--13923828 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
13923785 GGAAATGCAG
13923795 AAAACATTATTTGT
1 AAAACATTATTTGT
*
13923809 AAAACATTTTTTGT
1 AAAACATTATTTGT
*
13923823 GAAACA
1 AAAACA
13923829 AATGCACCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (14 bp):
AAAACATTATTTGT
Found at i:13924667 original size:47 final size:47
Alignment explanation
Indices: 13924614--13924707 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
13924604 TATGTTGTAG
*
13924614 GGTTAAAACCAAAAAATATTTGTTGCGTTCTTGATGTTTCCTTACGT
1 GGTTAAAACCAAAAAATATTTGTTGCGTTCTCGATGTTTCCTTACGT
13924661 GGTTAAAACCAAAAAATATTTGTTGCGTTCTCGATGTTTCCTTACGT
1 GGTTAAAACCAAAAAATATTTGTTGCGTTCTCGATGTTTCCTTACGT
13924708 TATTGATAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (47 bp):
GGTTAAAACCAAAAAATATTTGTTGCGTTCTCGATGTTTCCTTACGT
Found at i:13926089 original size:69 final size:69
Alignment explanation
Indices: 13926004--13926145 Score: 257
Period size: 69 Copynumber: 2.1 Consensus size: 69
13925994 TTTGATCTAT
*
13926004 TAGAAATTTGTATATCTTGTTTGGATACATTGGATATATATATAATGAATTAAACACGGATTCTA
1 TAGAAATTTGTATATCTTGTTTGGATACATTGGATATATATATAAGGAATTAAACACGGATTCTA
13926069 TTTC
66 TTTC
*
13926073 TAGAAATTTGTATATCTTGTTTGGATATATTGGATATATATATAAGGAATTAAACACGGATTCTA
1 TAGAAATTTGTATATCTTGTTTGGATACATTGGATATATATATAAGGAATTAAACACGGATTCTA
*
13926138 TTTT
66 TTTC
13926142 TAGA
1 TAGA
13926146 TAATGTCTTA
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.42
Consensus pattern (69 bp):
TAGAAATTTGTATATCTTGTTTGGATACATTGGATATATATATAAGGAATTAAACACGGATTCTA
TTTC
Found at i:13926158 original size:69 final size:69
Alignment explanation
Indices: 13926004--13926164 Score: 234
Period size: 69 Copynumber: 2.3 Consensus size: 69
13925994 TTTGATCTAT
* * *
13926004 TAGAAATTTGTATATCTTGTTTGGATACATTGGATATATATATAATGAATTAAACACGGATTCTA
1 TAGAAATGTCTATATCTTGTTTGGATACATTGGATATATATATAAGGAATTAAACACGGATTCTA
13926069 TTTC
66 TTTC
* * *
13926073 TAGAAATTTGTATATCTTGTTTGGATATATTGGATATATATATAAGGAATTAAACACGGATTCTA
1 TAGAAATGTCTATATCTTGTTTGGATACATTGGATATATATATAAGGAATTAAACACGGATTCTA
*
13926138 TTTT
66 TTTC
13926142 TAGATAATGTCT-TATCTTAGTTT
1 TAGA-AATGTCTATATCTT-GTTT
13926165 TATTATAATG
Statistics
Matches: 85, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
69 76 0.89
70 9 0.11
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.44
Consensus pattern (69 bp):
TAGAAATGTCTATATCTTGTTTGGATACATTGGATATATATATAAGGAATTAAACACGGATTCTA
TTTC
Found at i:13929007 original size:33 final size:33
Alignment explanation
Indices: 13928970--13929040 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 33
13928960 TGGTCCAACC
* *
13928970 ATGGTATTATG-TTCAAGATTCCATAACCCAGTT
1 ATGGTATTATGATT-AAAATTCCATAACCCAGCT
* * *
13929003 ATGGTCTTTTGATTAAAATTCCATAGCCCAGCT
1 ATGGTATTATGATTAAAATTCCATAACCCAGCT
13929036 ATGGT
1 ATGGT
13929041 CTTACATTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
33 30 0.94
34 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (33 bp):
ATGGTATTATGATTAAAATTCCATAACCCAGCT
Found at i:13929009 original size:103 final size:101
Alignment explanation
Indices: 13928896--13929080 Score: 253
Period size: 103 Copynumber: 1.8 Consensus size: 101
13928886 GCCATAGCTT
** *
13928896 AGTTATGGTCTTACCATTAGGATGCCATAGCCCAGCTATGGTCTTACACATAAATATATTGTCAT
1 AGTTATGGTCTTACCATTAAAATGCCATAGCCCAGCTATGGTCTTACA-ATAAA-ATATTGCCAT
*
13928961 GGTCCAACCATGGTATTATGTTCAAGATTCCATAACCC
64 GGTCCAAACATGGTATTATGTTCAAGATTCCATAACCC
*** * * *
13928999 AGTTATGGTCTTTTGATTAAAATTCCATAGCCCAGCTATGGTCTTACATTTAAATATTGCCATGG
1 AGTTATGGTCTTACCATTAAAATGCCATAGCCCAGCTATGGTCTTACAATAAAATATTGCCATGG
*
13929064 TCCAAACATGGTCTTAT
66 TCCAAACATGGTATTAT
13929081 CCATCAATTC
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
101 26 0.37
102 3 0.04
103 42 0.59
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.35
Consensus pattern (101 bp):
AGTTATGGTCTTACCATTAAAATGCCATAGCCCAGCTATGGTCTTACAATAAAATATTGCCATGG
TCCAAACATGGTATTATGTTCAAGATTCCATAACCC
Found at i:13929052 original size:33 final size:34
Alignment explanation
Indices: 13928987--13929061 Score: 82
Period size: 33 Copynumber: 2.2 Consensus size: 34
13928977 TATGTTCAAG
* **
13928987 ATTCCATAACCCAGTTATGGTCTTTTGATTAAA-
1 ATTCCATAACCCAGCTATGGTCTTTACATTAAAT
*
13929020 ATTCCATAGCCCAGCTATGGTC-TTACATTTAAAT
1 ATTCCATAACCCAGCTATGGTCTTTACA-TTAAAT
13929054 ATTGCCAT
1 ATT-CCAT
13929062 GGTCCAAACA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
32 3 0.09
33 25 0.71
34 3 0.09
35 4 0.11
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.37
Consensus pattern (34 bp):
ATTCCATAACCCAGCTATGGTCTTTACATTAAAT
Found at i:13932038 original size:12 final size:12
Alignment explanation
Indices: 13932023--13932051 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
13932013 TGTCTTAGGC
13932023 CGTGTCCTTACT
1 CGTGTCCTTACT
13932035 CGTGTCCTTACT
1 CGTGTCCTTACT
13932047 CGTGT
1 CGTGT
13932052 AACTCTCTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.31, G:0.21, T:0.41
Consensus pattern (12 bp):
CGTGTCCTTACT
Found at i:13933101 original size:103 final size:101
Alignment explanation
Indices: 13932991--13933183 Score: 235
Period size: 103 Copynumber: 1.9 Consensus size: 101
13932981 ATTCGTAGTC
* **
13932991 CCATAACCCAGTTATGGTCTTACCAATAGGATGCCATAGCCCAGCTATGGTATCACACATAAATA
1 CCATAACCCAATTATGGTCTTACCAATAAAATGCCATAGCCCAGCTATGGTATCACACATAAATA
13933056 TACTGCCATGGTCC-AACTATGGTCTTACATTCAAGATG
66 T--TGCCATGGTCCAAAC-ATGGTCTTACATTCAAGATG
* ** * * * * ** *
13933094 CCATAACCCAATTATGGTTTTTTCATTAAAATTCCATAGCCCAGCTATGGTCTTACATTTAAATG
1 CCATAACCCAATTATGGTCTTACCAATAAAATGCCATAGCCCAGCTATGGTATCACACATAAATA
13933159 TTGCCATGGTCCAAACATGGTCTTA
66 TTGCCATGGTCCAAACATGGTCTTA
13933184 TCCATCAATT
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
101 20 0.26
102 3 0.04
103 53 0.70
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (101 bp):
CCATAACCCAATTATGGTCTTACCAATAAAATGCCATAGCCCAGCTATGGTATCACACATAAATA
TTGCCATGGTCCAAACATGGTCTTACATTCAAGATG
Found at i:13933110 original size:33 final size:32
Alignment explanation
Indices: 13933068--13933158 Score: 92
Period size: 33 Copynumber: 2.8 Consensus size: 32
13933058 CTGCCATGGT
*
13933068 CCAACTATGGTCTTACATTCAAGATGCCATAAC
1 CCAACTATGGTCTTACATT-AAAATGCCATAAC
* * * * *
13933101 CCAATTATGGTTTTTTCATTAAAATTCCATAGC
1 CCAACTATGG-TCTTACATTAAAATGCCATAAC
* *
13933134 CCAGCTATGGTCTTACATTTAAATG
1 CCAACTATGGTCTTACATTAAAATG
13933159 TTGCCATGGT
Statistics
Matches: 45, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
32 11 0.24
33 27 0.60
34 7 0.16
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (32 bp):
CCAACTATGGTCTTACATTAAAATGCCATAAC
Found at i:13934805 original size:15 final size:15
Alignment explanation
Indices: 13934785--13934816 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
13934775 CATTTCACTA
*
13934785 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
13934800 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
13934815 TT
1 TT
13934817 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:13943589 original size:17 final size:17
Alignment explanation
Indices: 13943530--13943589 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
13943520 TAATAAATTT
13943530 AAAATATAATATATAATAA
1 AAAATATAAT-TAT-ATAA
13943549 AAAATAT-ATT-TAT-A
1 AAAATATAATTATATAA
*
13943563 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
13943581 AAAATATAA
1 AAAATATAA
13943590 AATATATTGG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 5 0.14
15 4 0.11
16 4 0.11
17 8 0.23
18 7 0.20
19 7 0.20
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:13944125 original size:17 final size:18
Alignment explanation
Indices: 13944072--13944178 Score: 146
Period size: 18 Copynumber: 5.9 Consensus size: 18
13944062 AATCATATCT
*
13944072 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
13944091 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
13944109 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
13944126 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
*
13944144 TCTAAGATTG-TATCATG
1 TCTAAGATTGCTATCATA
13944161 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
13944179 TGAAGATTAT
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
17 31 0.39
18 32 0.41
19 16 0.20
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:13944130 original size:35 final size:35
Alignment explanation
Indices: 13944072--13944178 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
13944062 AATCATATCT
13944072 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
13944109 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
13944144 TCTAAGATTGTATCATGTCTAAGATTGCATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
13944179 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 53 0.78
36 5 0.07
37 10 0.15
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:13945693 original size:46 final size:46
Alignment explanation
Indices: 13945640--13945756 Score: 198
Period size: 46 Copynumber: 2.5 Consensus size: 46
13945630 GTGTGCTAGC
**
13945640 GTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGT
* *
13945686 GTAAGACATGTCTGGGACATGCATCAGCCACATTATGATAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGT
13945732 GTAAGACATGTCTGGGACATGCATC
1 GTAAGACATGTCTGGGACATGCATC
13945757 GTCATTGAGA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGT
Found at i:13945775 original size:46 final size:45
Alignment explanation
Indices: 13945634--13945805 Score: 197
Period size: 46 Copynumber: 3.8 Consensus size: 45
13945624 TGATATGTGT
* **
13945634 GCTAGCGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CACATTATGAGA
* *
13945680 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CACATTATGAGA
*
13945726 GCTAGTGTAAGACATGTCTGGGACATGCATC-G-TCATTGA-GACGGGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACATT-ATGA---GA
* *
13945772 GCTAGTGCAAGACATGTCAGGGACATGCATCAGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC
13945806 GTCGAGATAT
Statistics
Matches: 110, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
43 6 0.05
44 1 0.01
45 1 0.01
46 101 0.92
47 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACATTATGAGA
Found at i:13945926 original size:49 final size:49
Alignment explanation
Indices: 13945640--13946038 Score: 189
Period size: 46 Copynumber: 8.5 Consensus size: 49
13945630 GTGTGCTAGC
* * * * *
13945640 GTAAGACATGTCTGGGACAT-GCATTGGCCAC-AT-TATGAGAGCCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACCTCGATGTATGAAAGCCAGT
* * * *
13945686 GTAAGACATGTCTGGGACAT-GCATC-AGCCAC-AT-TATGATAGCTAGT
1 GTAAGACCTGTCTGGGACATGGCATCGA-CCTCGATGTATGAAAGCCAGT
* * * * * ** *
13945732 GTAAGACATGTCTGGGACAT-GCATCGTCATTGA-G-ACGGGAGCTAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACCTCGATGTATGAAAGCCAGT
* * * * *
13945778 GCAAGACATGTCAGGGACAT-GCATC-AGCGTCGA-GATAT-ACAAGCTAGT
1 GTAAGACCTGTCTGGGACATGGCATCGA-CCTCGATG-TATGA-AAGCCAGT
* * * ** *
13945826 GTAGGACCTTTCTGGGACATGGCATC-A--TC-TTGT-TGAGTGTCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACCTCGATGTATGAAAGCCAGT
* * *
13945870 GTAAGACCTGTCTGGGATATGGCTTCGACAC-CGATAG-ATGAGAGCCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGAC-CTCGAT-GTATGAAAGCCAGT
* * * * *
13945919 GTAAGACCTGTCCGGGACACGACATCGGCCTCGATGTATGAAAGTCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACCTCGATGTATGAAAGCCAGT
* **
13945968 GTAAGACCTGTTTGGGACATGGCATCGA-CTCTGATG--TGCTAGCCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACCTC-GATGTATGAAAGCCAGT
* *
13946015 ATAAGACCATGTCTGCGACATGGC
1 GTAAGACC-TGTCTGGGACATGGC
13946039 GTCGGCAATT
Statistics
Matches: 276, Mismatches: 55, Indels: 42
0.74 0.15 0.11
Matches are distributed among these distances:
44 27 0.10
45 3 0.01
46 107 0.39
47 17 0.06
48 42 0.15
49 80 0.29
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (49 bp):
GTAAGACCTGTCTGGGACATGGCATCGACCTCGATGTATGAAAGCCAGT
Found at i:13948651 original size:15 final size:15
Alignment explanation
Indices: 13948631--13948680 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
13948621 TGAATTTAAT
13948631 TTAATATTAAAGTGA
1 TTAATATTAAAGTGA
** *
13948646 TTAATATTGAATTTAA
1 TTAATATT-AAAGTGA
13948662 TTTAATATTAAAGTGA
1 -TTAATATTAAAGTGA
13948678 TTA
1 TTA
13948681 TCTTAATATT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
15 11 0.41
16 8 0.30
17 8 0.30
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (15 bp):
TTAATATTAAAGTGA
Found at i:13948704 original size:37 final size:32
Alignment explanation
Indices: 13948614--13948680 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
13948604 TTTTAATAGT
13948614 TTAATATTGAATTTAATTTAATATTAAAGTGA
1 TTAATATTGAATTTAATTTAATATTAAAGTGA
13948646 TTAATATTGAATTTAATTTAATATTAAAGTGA
1 TTAATATTGAATTTAATTTAATATTAAAGTGA
13948678 TTA
1 TTA
13948681 TCTTAATATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (32 bp):
TTAATATTGAATTTAATTTAATATTAAAGTGA
Found at i:13955336 original size:18 final size:18
Alignment explanation
Indices: 13955299--13955338 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
13955289 CAATAGTTCT
*
13955299 CATACAATAAGCAGTGCA
1 CATACAATAAGCAATGCA
* *
13955317 CATATAATAAGCAATTCA
1 CATACAATAAGCAATGCA
13955335 CATA
1 CATA
13955339 AAATGGGCAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.47, C:0.20, G:0.10, T:0.23
Consensus pattern (18 bp):
CATACAATAAGCAATGCA
Found at i:13955445 original size:17 final size:17
Alignment explanation
Indices: 13955384--13955464 Score: 56
Period size: 17 Copynumber: 4.8 Consensus size: 17
13955374 AAACATTTGC
*
13955384 TCATATGAAATAATAGT
1 TCATACGAAATAATAGT
* * * *
13955401 TCTTACCAAATGATAGC
1 TCATACGAAATAATAGT
* *
13955418 TCATGCAAAATAATAGT
1 TCATACGAAATAATAGT
* *
13955435 TCATATGAAAT-ATCAAT
1 TCATACGAAATAAT-AGT
*
13955452 TCATACCAAATAA
1 TCATACGAAATAA
13955465 CAATTCACGC
Statistics
Matches: 46, Mismatches: 16, Indels: 3
0.71 0.25 0.05
Matches are distributed among these distances:
16 2 0.04
17 43 0.93
18 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.31
Consensus pattern (17 bp):
TCATACGAAATAATAGT
Found at i:13956174 original size:18 final size:18
Alignment explanation
Indices: 13956133--13956175 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
13956123 ATGGTTTGGA
* * *
13956133 AAATTAATACAGTTTTCT
1 AAATTAATACAGATTGCC
*
13956151 ATATTAATACAGATTGCC
1 AAATTAATACAGATTGCC
13956169 AAATTAA
1 AAATTAA
13956176 CAGGTTTGCC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.37
Consensus pattern (18 bp):
AAATTAATACAGATTGCC
Found at i:13956612 original size:29 final size:30
Alignment explanation
Indices: 13956574--13956671 Score: 92
Period size: 32 Copynumber: 3.1 Consensus size: 30
13956564 ATCTATAAAC
*
13956574 ATATAT-TATATAATAAAACCCATGCATAT
1 ATATATATATATAATAAAACCCATGAATAT
*
13956603 AATATATATATATTACA-AAAACCCATTAATAT
1 -ATATATATATA-TA-ATAAAACCCATGAATAT
* *
13956635 ATATACTATATATAAAATAAAGCCCATGTATAT
1 ATATA-TATATAT--AATAAAACCCATGAATAT
13956668 ATAT
1 ATAT
13956672 CATAACTTCA
Statistics
Matches: 56, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
30 6 0.11
31 10 0.18
32 22 0.39
33 18 0.32
ACGTcount: A:0.50, C:0.12, G:0.03, T:0.35
Consensus pattern (30 bp):
ATATATATATATAATAAAACCCATGAATAT
Found at i:13957918 original size:32 final size:31
Alignment explanation
Indices: 13957853--13957919 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 31
13957843 AACCTAAATT
* * * * *
13957853 ATTAATTCTAATTGTTTTAATATTTTATTTA
1 ATTAATTCTAATTATTTAAATATATAATCTA
13957884 ATTAATTCCTAATTATTTAAATATATAATCTA
1 ATTAATT-CTAATTATTTAAATATATAATCTA
13957916 ATTA
1 ATTA
13957920 CAATTTTCGG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 7 0.23
32 23 0.77
ACGTcount: A:0.39, C:0.06, G:0.01, T:0.54
Consensus pattern (31 bp):
ATTAATTCTAATTATTTAAATATATAATCTA
Found at i:13979954 original size:25 final size:25
Alignment explanation
Indices: 13979924--13979985 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
13979914 ATCACTGGGC
*
13979924 CAAAGCCCTTTT-GATAAACTGGGG
1 CAAAGCCCTTTTCGATAAACTAGGG
*
13979948 CAAAAGCCCTTTTCGGTAAACTAGGG
1 C-AAAGCCCTTTTCGATAAACTAGGG
*
13979974 CATAGCCCTTTT
1 CAAAGCCCTTTT
13979986 TGTACTTCCT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 1 0.03
25 21 0.64
26 11 0.33
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (25 bp):
CAAAGCCCTTTTCGATAAACTAGGG
Found at i:13980061 original size:20 final size:20
Alignment explanation
Indices: 13980036--13980102 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
13980026 TTATGAATAC
13980036 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
13980056 ATCATGTGCATTTCGTACAT
1 ATCATGTGCATATCATACAT
13980076 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
13980096 ATCATGT
1 ATCATGT
13980103 ATATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:13980089 original size:11 final size:11
Alignment explanation
Indices: 13980036--13980091 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
13980026 TTATGAATAC
13980036 ATCATGTGCAT
1 ATCATGTGCAT
*
13980047 ATCA--TACAT
1 ATCATGTGCAT
13980056 ATCATGTGCAT
1 ATCATGTGCAT
* *
13980067 TTC--GTACAT
1 ATCATGTGCAT
13980076 ATCATGTGCAT
1 ATCATGTGCAT
13980087 ATCAT
1 ATCAT
13980092 ACATATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:13988086 original size:26 final size:25
Alignment explanation
Indices: 13988029--13988087 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 25
13988019 TCTTTTAATC
*
13988029 ACTGGGGC-AAAGCCCTTTTGATAA
1 ACTGGGGCAAAAACCCTTTTGATAA
* *
13988053 ACTCGGGCAAAAACCCTTTTCGGTAA
1 ACTGGGGCAAAAACCCTTTT-GATAA
13988079 ACTGGGGCA
1 ACTGGGGCA
13988088 TAGCCCTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 7 0.24
25 10 0.34
26 12 0.41
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (25 bp):
ACTGGGGCAAAAACCCTTTTGATAA
Found at i:13988098 original size:26 final size:24
Alignment explanation
Indices: 13988029--13988097 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 24
13988019 TCTTTTAATC
13988029 ACTGGGGCAAAGCCCTTTTGATAA
1 ACTGGGGCAAAGCCCTTTTGATAA
* * *
13988053 ACTCGGGCAAAAACCCTTTTCGGTAA
1 ACTGGGGC-AAAGCCCTTTT-GATAA
*
13988079 ACTGGGGCATAGCCCTTTT
1 ACTGGGGCAAAGCCCTTTT
13988098 TGCACTTCCT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
24 7 0.19
25 19 0.51
26 11 0.30
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (24 bp):
ACTGGGGCAAAGCCCTTTTGATAA
Found at i:13988173 original size:20 final size:20
Alignment explanation
Indices: 13988148--13988222 Score: 109
Period size: 20 Copynumber: 3.9 Consensus size: 20
13988138 TTATGAATAC
13988148 ATCATGTGCATATCAAACAT
1 ATCATGTGCATATCAAACAT
**
13988168 ATCATGTGCATATCGTACAT
1 ATCATGTGCATATCAAACAT
*
13988188 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCAAACAT
13988208 ATCATGT--ATATCAAA
1 ATCATGTGCATATCAAA
13988223 ATCCCATGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
18 7 0.14
20 44 0.86
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCAAACAT
Found at i:13988179 original size:11 final size:11
Alignment explanation
Indices: 13988148--13988203 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
13988138 TTATGAATAC
13988148 ATCATGTGCAT
1 ATCATGTGCAT
**
13988159 ATCA--AACAT
1 ATCATGTGCAT
13988168 ATCATGTGCAT
1 ATCATGTGCAT
*
13988179 ATC--GTACAT
1 ATCATGTGCAT
13988188 ATCATGTGCAT
1 ATCATGTGCAT
13988199 ATCAT
1 ATCAT
13988204 ACATATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:13991451 original size:39 final size:39
Alignment explanation
Indices: 13991397--13991692 Score: 441
Period size: 39 Copynumber: 7.5 Consensus size: 39
13991387 TAATGGAGAA
* *
13991397 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTTGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
13991436 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
13991475 TTATATCCGGGCTAAGTCTCGAAGGAATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
13991514 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
13991553 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTACTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
13991592 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
13991631 TTATATCTGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
*
13991670 TTATATTCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
13991693 CATGCTTTGT
Statistics
Matches: 238, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 217 0.91
40 21 0.09
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:13995221 original size:27 final size:27
Alignment explanation
Indices: 13995191--13995368 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
13995181 ATATTGAGCC
* *
13995191 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
13995218 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
13995245 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
13995273 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
13995300 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
13995327 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
13995354 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
13995369 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:13995303 original size:55 final size:54
Alignment explanation
Indices: 13995191--13995368 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
13995181 ATATTGAGCC
* * * * *
13995191 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
13995245 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
13995300 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
13995354 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
13995369 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:14003195 original size:27 final size:27
Alignment explanation
Indices: 14003165--14003342 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
14003155 ATATTGAGCC
* *
14003165 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
14003192 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
14003219 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
14003247 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
14003274 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
14003301 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
14003328 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14003343 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:14011183 original size:27 final size:27
Alignment explanation
Indices: 14011153--14011325 Score: 117
Period size: 27 Copynumber: 6.6 Consensus size: 27
14011143 ATATTGAGCC
* *
14011153 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
14011180 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
14011207 CGCACACTTAGTGCTACAT-A-GAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
14011232 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
14011259 CG--CACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
14011284 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
14011311 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14011326 GTACAATTTA
Statistics
Matches: 114, Mismatches: 24, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
25 40 0.35
26 3 0.03
27 70 0.61
28 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:14011262 original size:52 final size:54
Alignment explanation
Indices: 14011153--14011325 Score: 153
Period size: 52 Copynumber: 3.3 Consensus size: 54
14011143 ATATTGAGCC
* * * *
14011153 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAAT
* * ** *
14011207 CGCACACTTAGTGCTACAT-A-GAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAAT
* ** *
14011259 CG--CACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAA-TCA-AAT
14011311 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14011326 GTACAATTTA
Statistics
Matches: 93, Mismatches: 18, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
49 1 0.01
50 13 0.14
51 1 0.01
52 50 0.54
53 1 0.01
54 27 0.29
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAAT
Found at i:14014729 original size:17 final size:18
Alignment explanation
Indices: 14014694--14014729 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
14014684 TATGTAGCCT
*
14014694 GCCCGTGTGGGCTCACAC
1 GCCCGTGTGGGCCCACAC
14014712 GCCCGTGT-GGCCCACAC
1 GCCCGTGTGGGCCCACAC
14014729 G
1 G
14014730 ATCCAAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.11, C:0.42, G:0.33, T:0.14
Consensus pattern (18 bp):
GCCCGTGTGGGCCCACAC
Found at i:14020263 original size:18 final size:17
Alignment explanation
Indices: 14020238--14020283 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
14020228 CATACCCGGA
* *
14020238 ACCCGACCCCGACCCTG
1 ACCCGACCCAGACCCAG
14020255 ACCCTGACCCAGACCCAG
1 ACCC-GACCCAGACCCAG
14020273 ACCCGAACCCA
1 ACCCG-ACCCA
14020284 AATCCAAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 5 0.20
18 20 0.80
ACGTcount: A:0.26, C:0.54, G:0.15, T:0.04
Consensus pattern (17 bp):
ACCCGACCCAGACCCAG
Found at i:14021072 original size:19 final size:19
Alignment explanation
Indices: 14021050--14021110 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
14021040 AAGAATATTA
14021050 AAATATATATAAAAATTGT
1 AAATATATATAAAAATTGT
*
14021069 AAATA-ATTATTAAATATTGTT
1 AAATATA-TA-TAAAAATTG-T
* *
14021090 AAA-ATATTTTAAAATTGT
1 AAATATATATAAAAATTGT
14021108 AAA
1 AAA
14021111 AAAGTTATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
18 5 0.15
19 14 0.41
20 10 0.29
21 5 0.15
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (19 bp):
AAATATATATAAAAATTGT
Found at i:14021121 original size:20 final size:19
Alignment explanation
Indices: 14021061--14021121 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 19
14021051 AATATATATA
*
14021061 AAAATTGTAAATAATTATT
1 AAAATTGTAAAAAATTATT
*
14021080 AAATATTGTTAAAATATT-TT
1 AAA-ATTG-TAAAAAATTATT
14021100 AAAATTGTAAAAAAGTTATT
1 AAAATTGTAAAAAA-TTATT
14021120 AA
1 AA
14021122 TTTTTTTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
18 6 0.17
19 9 0.26
20 13 0.37
21 7 0.20
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (19 bp):
AAAATTGTAAAAAATTATT
Found at i:14021141 original size:39 final size:39
Alignment explanation
Indices: 14021047--14021142 Score: 106
Period size: 39 Copynumber: 2.4 Consensus size: 39
14021037 TAAAAGAATA
*
14021047 TTAAAATATATATAAAAATTGTAAATAATTATTAAATATTG
1 TTAAAATATAT-T-AAAATTGTAAAAAATTATTAAATATTG
* * *
14021088 TTAAAATATTTTAAAATTGTAAAAAAGTTATT-AATTTTT
1 TTAAAATATATTAAAATTGTAAAAAA-TTATTAAATATTG
14021127 TTAAAA-ATGATTAAAA
1 TTAAAATAT-ATTAAAA
14021143 ACTTAGAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
38 2 0.04
39 30 0.62
40 6 0.12
41 10 0.21
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (39 bp):
TTAAAATATATTAAAATTGTAAAAAATTATTAAATATTG
Found at i:14021262 original size:19 final size:19
Alignment explanation
Indices: 14021224--14021261 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
14021214 TGGAATTTAA
14021224 TCAATAATTTCACAAATTT
1 TCAATAATTTCACAAATTT
* *
14021243 TCAATGATTTTAC-AATTT
1 TCAATAATTTCACAAATTT
14021261 T
1 T
14021262 TAATCGAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.37, C:0.13, G:0.03, T:0.47
Consensus pattern (19 bp):
TCAATAATTTCACAAATTT
Found at i:14021548 original size:20 final size:21
Alignment explanation
Indices: 14021525--14021571 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
14021515 TTTTAAAATA
14021525 TTTTTGACAATATTTAGT-TT
1 TTTTTGACAATATTTAGTATT
*
14021545 TTTTT-ACAATATTTATTATT
1 TTTTTGACAATATTTAGTATT
14021565 TTTTTGA
1 TTTTTGA
14021572 TAATTTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 11 0.46
20 12 0.50
21 1 0.04
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.64
Consensus pattern (21 bp):
TTTTTGACAATATTTAGTATT
Found at i:14021566 original size:19 final size:20
Alignment explanation
Indices: 14021523--14021568 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
14021513 AATTTTAAAA
*
14021523 TATTTTTGACAATATTTAGT
1 TATTTTTTACAATATTTAGT
14021543 T-TTTTTTACAATATTTA-T
1 TATTTTTTACAATATTTAGT
14021561 TATTTTTT
1 TATTTTTT
14021569 TGATAATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 2 0.08
19 21 0.88
20 1 0.04
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.65
Consensus pattern (20 bp):
TATTTTTTACAATATTTAGT
Found at i:14022024 original size:26 final size:26
Alignment explanation
Indices: 14021969--14022055 Score: 88
Period size: 26 Copynumber: 3.2 Consensus size: 26
14021959 GATTTGAGAT
*
14021969 TTAATTATTATATTTTT-TAAT-TTAA
1 TTAATTTTTATATTTTTATAATATT-A
14021994 TTTAATTTTTATATTTTTATAATATTA
1 -TTAATTTTTATATTTTTATAATATTA
* *
14022021 TTAATTAGTTTAATAATTTTATAATATAA
1 TTAATT--TTT-ATATTTTTATAATATTA
14022050 TTAATT
1 TTAATT
14022056 AGTTGAAATA
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
26 22 0.42
27 5 0.09
28 5 0.09
29 21 0.40
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (26 bp):
TTAATTTTTATATTTTTATAATATTA
Found at i:14024810 original size:25 final size:25
Alignment explanation
Indices: 14024782--14024830 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
14024772 TGATATTTCG
14024782 GCAGAGAAGGCATTGTTGAGATTCA
1 GCAGAGAAGGCATTGTTGAGATTCA
14024807 GCAGAGAAGGCATTGTTGAGATTC
1 GCAGAGAAGGCATTGTTGAGATTC
14024831 GCAAACTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.31, C:0.12, G:0.33, T:0.24
Consensus pattern (25 bp):
GCAGAGAAGGCATTGTTGAGATTCA
Found at i:14025815 original size:16 final size:16
Alignment explanation
Indices: 14025794--14025848 Score: 92
Period size: 16 Copynumber: 3.4 Consensus size: 16
14025784 TGAATTACTG
14025794 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
14025810 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
* *
14025826 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCA
14025842 ATTACAG
1 ATTACAG
14025849 TCAACCAAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:14031015 original size:15 final size:16
Alignment explanation
Indices: 14030989--14031032 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
14030979 GAATAAAAAT
14030989 CAGGCTTTATGCCTAA
1 CAGGCTTTATGCCTAA
*
14031005 CAGGC-TTATGCCTAG
1 CAGGCTTTATGCCTAA
* *
14031020 TAGGTTTTATGCC
1 CAGGCTTTATGCC
14031033 GGTGATTTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (16 bp):
CAGGCTTTATGCCTAA
Found at i:14031191 original size:50 final size:50
Alignment explanation
Indices: 14031112--14031277 Score: 210
Period size: 50 Copynumber: 3.3 Consensus size: 50
14031102 GCTAAATGAC
* * *
14031112 CTTGTATATTCAGCCATGA-AGGTATGCACAAATGTGATATTATATTTGAAT
1 CTTGTATATTCGGCCAT-ATAGGTAAGCACATATGTGATATTATATTTG-AT
*
14031163 -TTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTTGAT
* ** * *
14031212 CTTGCATATTCGATCTTATAGGTAAGCACATATGTGATATTGTATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTTGAT
*
14031262 CTTGTATATTTGGCCA
1 CTTGTATATTCGGCCA
14031278 AATGAGTGAT
Statistics
Matches: 98, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
49 3 0.03
50 95 0.97
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (50 bp):
CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTTGAT
Found at i:14038214 original size:50 final size:50
Alignment explanation
Indices: 14038154--14038319 Score: 210
Period size: 50 Copynumber: 3.3 Consensus size: 50
14038144 GCTAAATGAC
* *
14038154 CTTGTATATTCGGCCATGA-AGGTATGCACAAATGTGATAATATATTTGAAT
1 CTTGTATATTCGGCCAT-ATAGGTAAGCACAAATGTGATATTATATTTG-AT
* *
14038205 -TTGTATATTCGGCCATATAGGTAAGCACACATGTGATATTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACAAATGTGATATTATATTTGAT
* * * * *
14038254 CTTGCATATTCGACCTTATAGGTAAGCACATATGTGATATTGTATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACAAATGTGATATTATATTTGAT
*
14038304 CTTGTATATTTGGCCA
1 CTTGTATATTCGGCCA
14038320 AATGAGTGAT
Statistics
Matches: 99, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
49 3 0.03
50 96 0.97
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (50 bp):
CTTGTATATTCGGCCATATAGGTAAGCACAAATGTGATATTATATTTGAT
Found at i:14039309 original size:23 final size:22
Alignment explanation
Indices: 14039279--14039323 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
14039269 AAATTAAATC
14039279 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTA-AAAATCATATCT
*
14039302 TCTAAGATTAAATATCATATCT
1 TCTAAGATTAAAAATCATATCT
14039324 AAGATTGCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.42, C:0.16, G:0.04, T:0.38
Consensus pattern (22 bp):
TCTAAGATTAAAAATCATATCT
Found at i:14039355 original size:17 final size:18
Alignment explanation
Indices: 14039314--14039373 Score: 95
Period size: 17 Copynumber: 3.3 Consensus size: 18
14039304 TAAGATTAAA
14039314 TATCATATCTAAGATTGC
1 TATCATATCTAAGATTGC
*
14039332 AATCATATCTAAGATTG-
1 TATCATATCTAAGATTGC
14039349 TATCATATCTAAGATTGC
1 TATCATATCTAAGATTGC
14039367 ATATCAT
1 -TATCAT
14039374 TGAAGATTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
17 16 0.42
18 16 0.42
19 6 0.16
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (18 bp):
TATCATATCTAAGATTGC
Found at i:14039781 original size:45 final size:45
Alignment explanation
Indices: 14039732--14039998 Score: 249
Period size: 45 Copynumber: 5.9 Consensus size: 45
14039722 GATATCTGCT
* *
14039732 ATCTTTGATCTGCTCTCCGTCTAATACAGAGACGCCAAATCTGTC
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC
*
14039777 ATCTTCGATCTACTCCCCGTCTAATACAGAGACGCCAAATCTG-C
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC
* * * * * *
14039821 TTCTTCAATCTGCTTCCCATCTAATACAGAGATGCCAAATCTGTT
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC
* * *
14039866 ATC-TCTGATTTGCTCCCCGTCTAATACAAAGATGCCAAATCTGTC
1 ATCTTC-GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC
* * * * * * *
14039911 ATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAGATCTG-C
1 ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAAATCTGTC
*
14039955 TATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 -A--TCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATC
14039999 ATCTTGGATC
Statistics
Matches: 178, Mismatches: 32, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
43 6 0.03
44 46 0.26
45 95 0.53
46 1 0.01
47 19 0.11
48 5 0.03
49 6 0.03
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.30
Consensus pattern (45 bp):
ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC
Found at i:14039890 original size:89 final size:90
Alignment explanation
Indices: 14039725--14039998 Score: 288
Period size: 89 Copynumber: 3.0 Consensus size: 90
14039715 GAAAGGCGAT
* * *
14039725 ATCTGCTATCTTTGATCTGC-TCTCCGTCTAATACAGAGACGCCAAATCTGTCATCT-TCGATCT
1 ATCTGCT-TCTTCGATCTGCTTC-CCATCTAATACAGAGACGCCAAATCTGTTATCTCTCGATCT
* *
14039788 ACTCCCCGTCTAATACAGAGACGCCAA
64 GCTCCCCGTCTAATACAGAGATGCCAA
* * *
14039815 ATCTGCTTCTTCAATCTGCTTCCCATCTAATACAGAGATGCCAAATCTGTTATCTCT-GATTTGC
1 ATCTGCTTCTTCGATCTGCTTCCCATCTAATACAGAGACGCCAAATCTGTTATCTCTCGATCTGC
*
14039879 TCCCCGTCTAATACAAAGATGCCAA
66 TCCCCGTCTAATACAGAGATGCCAA
* * * * * * * * * *
14039904 ATCTGTCATCTTGGATCTGCTT-CGATGTAA-ACACATGAAGGTCAGATCTGCTATGTCTTCGAT
1 ATCTG-CTTCTTCGATCTGCTTCCCATCTAATACAGA-G-ACGCCAAATCTGTTATCTC-TCGAT
14039967 CTGCTCCCCGTCTAATACAGAGATGCCAA
62 CTGCTCCCCGTCTAATACAGAGATGCCAA
14039996 ATC
1 ATC
14039999 ATCTTGGATC
Statistics
Matches: 155, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
88 4 0.03
89 80 0.52
90 37 0.24
91 1 0.01
92 33 0.21
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (90 bp):
ATCTGCTTCTTCGATCTGCTTCCCATCTAATACAGAGACGCCAAATCTGTTATCTCTCGATCTGC
TCCCCGTCTAATACAGAGATGCCAA
Found at i:14040067 original size:78 final size:79
Alignment explanation
Indices: 14039938--14040153 Score: 294
Period size: 78 Copynumber: 2.8 Consensus size: 79
14039928 ATGTAAACAC
* *
14039938 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCCAGATCTACTATGCCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
14040002 TTGGATCTGCTTCA
66 TTGGATCTGCTTCA
* * *
14040016 ATGAAGGTCCA-ATCTATTATGCCTTTGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCCAGATCTACTATGCCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
14040080 TTGGATCTGCTTCA
66 TTGGATCTGCTTCA
* * * * * * **
14040094 ATGAAGGT-CAGATTTGCTATGTCTTCAATCTGCTCTCCGTCGAATATGGAGATGCCAAAT
1 ATGAAGGTCCAGATCTACTATGCCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAAT
14040154 TTGTTTCTTT
Statistics
Matches: 120, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
77 2 0.02
78 116 0.97
79 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (79 bp):
ATGAAGGTCCAGATCTACTATGCCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
TTGGATCTGCTTCA
Found at i:14050250 original size:17 final size:18
Alignment explanation
Indices: 14050218--14050252 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
14050208 GATATGATAC
*
14050218 TAAAATTATTAAAAAAAT
1 TAAAATTATAAAAAAAAT
14050236 TAAAA-TATAAAAAAAAT
1 TAAAATTATAAAAAAAAT
14050253 CCGAGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAATTATAAAAAAAAT
Found at i:14050560 original size:19 final size:19
Alignment explanation
Indices: 14050536--14050609 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
14050526 AATCATATAT
14050536 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
14050555 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
14050573 TCTAATATTGCATATCATA
1 TCTAAGATTGCATATCATA
14050592 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
14050610 TGAAGATTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
18 17 0.33
19 35 0.67
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:14050583 original size:37 final size:38
Alignment explanation
Indices: 14050529--14050609 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 38
14050519 ATTACAAAAT
14050529 CATAT-AT-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
*
14050565 CA-ATCATATCTAATATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
14050602 CATATCAT
1 CATATCAT
14050610 TGAAGATTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
35 2 0.05
36 4 0.10
37 30 0.73
38 5 0.12
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:14054472 original size:26 final size:27
Alignment explanation
Indices: 14054434--14054503 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 27
14054424 TTTTAATAAT
*
14054434 TGGGGCAAAAGCCCTTTTT-GGTAAAC
1 TGGGGCATAAGCCCTTTTTCGGTAAAC
*
14054460 TGGGGCATGAG-CCTTTTTCGGTAAAC
1 TGGGGCATAAGCCCTTTTTCGGTAAAC
*
14054486 TAGGGCATAAGCCCTTTT
1 TGGGGCATAAGCCCTTTT
14054504 GCACTTCCTC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 7 0.18
26 25 0.66
27 6 0.16
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (27 bp):
TGGGGCATAAGCCCTTTTTCGGTAAAC
Found at i:14054578 original size:20 final size:20
Alignment explanation
Indices: 14054553--14054619 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
14054543 TTATGAATAC
14054553 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
14054573 ATCATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
14054593 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
14054613 ATCATGT
1 ATCATGT
14054620 ATATCAAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:14054584 original size:11 final size:11
Alignment explanation
Indices: 14054553--14054608 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
14054543 TTATGAATAC
14054553 ATCATGTGCAT
1 ATCATGTGCAT
*
14054564 ATCA--TACAT
1 ATCATGTGCAT
14054573 ATCATGTGCAT
1 ATCATGTGCAT
*
14054584 ATC--GTACAT
1 ATCATGTGCAT
14054593 ATCATGTGCAT
1 ATCATGTGCAT
14054604 ATCAT
1 ATCAT
14054609 ATCAATCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:14061841 original size:36 final size:36
Alignment explanation
Indices: 14061755--14061842 Score: 99
Period size: 36 Copynumber: 2.4 Consensus size: 36
14061745 GCTCTTGACT
* * *
14061755 GAGATATC-AGGTCTTCTCAATCCTAAGCTCCTGAAT
1 GAGATATCGA-GTCTTCTCAATCCCAAGATCCTGAAC
* *
14061791 GCA-ATATTGGGTCTTCTCAATCCCAAGATCCTGAAC
1 G-AGATATCGAGTCTTCTCAATCCCAAGATCCTGAAC
14061827 GAGATATCGAGTCTTC
1 GAGATATCGAGTCTTC
14061843 CCAAGCTCCT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
35 1 0.02
36 40 0.95
37 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (36 bp):
GAGATATCGAGTCTTCTCAATCCCAAGATCCTGAAC
Done.