Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 49 of 325
Found at i:14758551 original size:13 final size:13
Alignment explanation
Indices: 14758535--14758566 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14758525 CGCACACGGT
14758535 CGTGTCACACAGG
1 CGTGTCACACAGG
*
14758548 CGTGTCACACGGG
1 CGTGTCACACAGG
14758561 CGTGTC
1 CGTGTC
14758567 CCTTTCGAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (13 bp):
CGTGTCACACAGG
Found at i:14765449 original size:22 final size:21
Alignment explanation
Indices: 14765424--14765464 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
14765414 TTTTAACGTG
14765424 TTAAATTTTAATTACTTTTATA
1 TTAAATTTTAATTA-TTTTATA
*
14765446 TTAAATTTTGATTATTTTA
1 TTAAATTTTAATTATTTTA
14765465 ATCATTTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (21 bp):
TTAAATTTTAATTATTTTATA
Found at i:14767758 original size:54 final size:54
Alignment explanation
Indices: 14767694--14767802 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
14767684 TGGAAGTGAG
14767694 TGACTCATTTAAACTATTCGAGGTGACTAAGGATGCCTTGAGACTGAGATTATT
1 TGACTCATTTAAACTATTCGAGGTGACTAAGGATGCCTTGAGACTGAGATTATT
14767748 TGACTCATTTAAACTATTCGAGGTGACTAAGGATGCCTTGAGACTGAGATTATT
1 TGACTCATTTAAACTATTCGAGGTGACTAAGGATGCCTTGAGACTGAGATTATT
14767802 T
1 T
14767803 CCATACTTCT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (54 bp):
TGACTCATTTAAACTATTCGAGGTGACTAAGGATGCCTTGAGACTGAGATTATT
Found at i:14774015 original size:21 final size:20
Alignment explanation
Indices: 14773986--14774024 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
14773976 CTCTTGAAAC
*
14773986 GGGCACATGCCCGTGTGGAA
1 GGGCACATGCCCATGTGGAA
14774006 GGGCAACATGCCCATGTGG
1 GGGC-ACATGCCCATGTGG
14774025 TCATCATAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.21, C:0.26, G:0.38, T:0.15
Consensus pattern (20 bp):
GGGCACATGCCCATGTGGAA
Found at i:14775809 original size:30 final size:30
Alignment explanation
Indices: 14775773--14775829 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
14775763 TATAATTGGG
*
14775773 CAAAATGACCATTTTGCCCCTAGGCTTTCA
1 CAAAATGACCATTTTACCCCTAGGCTTTCA
*
14775803 CAAAATGACCATTTTACTCCTAGGCTT
1 CAAAATGACCATTTTACCCCTAGGCTT
14775830 GAAATTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.32
Consensus pattern (30 bp):
CAAAATGACCATTTTACCCCTAGGCTTTCA
Found at i:14778215 original size:46 final size:49
Alignment explanation
Indices: 14777915--14778238 Score: 217
Period size: 47 Copynumber: 6.8 Consensus size: 49
14777905 ATAAGGTATG
* * *
14777915 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCAT-T-A
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TACATCTCA
* * * * ** *
14777963 A-G-TCAATGCCATGTCCAAGACATGGTCTTACA-TTGAT-TATCGAAATCG
1 ATGCT-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTA-C-ATCTCA
* * * * * *
14778011 AGGCCGACGCCATGTCCCAGACATGGTCCTACACTAGCTCTCACATATCC
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-ACATCTCA
* * * * * *
14778061 ATGGTGATGCCATGTCCCAGCCATGGTCTTACACTAACACTTC-TAT-A
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCA
* * * * * * *
14778108 CATGCCGATGCCATATCCTAGACAT-GTCTTATACTGGCT-TACATCGCG
1 -ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCA
*
14778156 AGGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-C-TCTCA
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCA
*
14778201 ATGCTAATGCCATGTCCCAGACATGGTCTTACACTAGC
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGC
14778239 ATACAAATAA
Statistics
Matches: 210, Mismatches: 50, Indels: 33
0.72 0.17 0.11
Matches are distributed among these distances:
44 1 0.00
45 11 0.05
46 45 0.21
47 60 0.29
48 24 0.11
49 26 0.12
50 40 0.19
51 2 0.01
52 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (49 bp):
ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCA
Found at i:14781108 original size:46 final size:46
Alignment explanation
Indices: 14781058--14781186 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
14781048 TGGTTGAGCA
*
14781058 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
14781104 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
14781150 CCCGAGCTCGTTGAATTAAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14781187 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:14784123 original size:15 final size:15
Alignment explanation
Indices: 14784103--14784165 Score: 80
Period size: 15 Copynumber: 4.4 Consensus size: 15
14784093 GTATCTTGGG
14784103 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
14784118 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
14784133 -TTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
14784147 TTTCTTTATTC-GG-
1 TTTCTTTATTCTGGA
14784160 TTTCTT
1 TTTCTT
14784166 GTTATCTTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
13 8 0.19
14 12 0.28
15 21 0.49
16 2 0.05
ACGTcount: A:0.11, C:0.16, G:0.13, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:14793896 original size:19 final size:19
Alignment explanation
Indices: 14793862--14793959 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
14793852 AGATTACAAG
14793862 ATCATATCTTTAAGATTGCAT
1 ATCATATC--TAAGATTGCAT
14793883 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14793902 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
14793919 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14793938 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14793957 ATC
1 ATC
14793960 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 50 0.67
21 8 0.11
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:14793926 original size:36 final size:37
Alignment explanation
Indices: 14793862--14793959 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
14793852 AGATTACAAG
14793862 ATCATATCTTTAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC--TAAGATTG-ATATCATATCTAAGATTGCAT
14793902 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
14793938 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
14793960 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 12 0.21
40 8 0.14
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:14794695 original size:87 final size:85
Alignment explanation
Indices: 14794377--14794858 Score: 288
Period size: 87 Copynumber: 5.5 Consensus size: 85
14794367 GACAATACAG
* ** *
14794377 AGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACA-CGTGAAAGCCAAATCTGCTATGTCTT
1 AGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATC-TGAAAGTCAAATCTGCTATGTCTT
* *
14794441 TGATTTGCTCCTTGGGAACACA
65 CGATTTGCTCCTT-GAAACACA
* * * *
14794463 AGGATGCCAAATCATCTTGGATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGT-A
1 A-GATGCCAAATCATCTTGGATCTGCTTCAGTATAAA-CATCTGAAAGTCAAATCTGCTATGTCT
* ***
14794526 TC--TGTT-CTCCGTCGAAA-TGG
64 TCGAT-TTGCTCC-TTGAAACACA
* * ** * *
14794546 AGATGCTAAATCTGTTATCTTGGATCTACTTTGGTGTAAGAACTTCTGAAAGTCAAATCTGCTAT
1 AGATGCCAAATC----ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTCAAATCTGCTAT
*
14794611 GTCTTCGATTTGTTCCTTGTAAACACA
60 GTCTTCGATTTGCTCCTTG-AAACACA
* * * * *
14794638 AGAATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACC
1 AG-ATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAATCTGCTATGT-CT
* * ***
14794703 T-G--CT-CTCCGTCGAAA-TGG
64 TCGATTTGCTCC-TTGAAACACA
* * ** * * *
14794721 AGATGCCAGATTTGTTATCTTGGATCTGCTTTGGTGTGAGGACATCCGAAAGTCAAATCTGCTAT
1 AGATGCCA-A---ATCATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTCAAATCTGCTAT
* *
14794786 GTCTTCAATTTGTTCCTTGTAAACACA
60 GTCTTCGATTTGCTCCTTG-AAACACA
*
14794813 AGAATGCCAAATCATCTTGGATCTGCTTTAGTATAAACATCT-AAAG
1 AG-ATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAG
14794859 GTTAGACCTG
Statistics
Matches: 291, Mismatches: 71, Indels: 68
0.68 0.17 0.16
Matches are distributed among these distances:
82 16 0.05
83 4 0.01
84 14 0.05
85 6 0.02
86 44 0.15
87 78 0.27
88 48 0.16
89 41 0.14
90 7 0.02
91 13 0.04
92 5 0.02
93 15 0.05
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (85 bp):
AGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAATCTGCTATGTCTTC
GATTTGCTCCTTGAAACACA
Found at i:14794715 original size:175 final size:175
Alignment explanation
Indices: 14794417--14794999 Score: 909
Period size: 175 Copynumber: 3.3 Consensus size: 175
14794407 CGTAAACACG
* * * ** *
14794417 TGAAAGCCAAATCTGCTATGTCTTTGATTTGCTCCTTGGGAACACAAGGATGCCAAATCATCTTG
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* * *
14794482 GATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTGTTCTCCGTCGAAATGG
66 GATCTGCTTCAGTATAAA-CATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGG
* * * * *
14794546 AGATGCTAAATCTGTTATCTTGGATCTACTTTGGTGTAAGAACTTC
130 AGATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
14794592 TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
14794657 GATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGA
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGA
* *
14794722 GATGCCAGATTTGTTATCTTGGATCTGCTTTGGTGTGAGGACATC
131 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
* *
14794767 CGAAAGTCAAATCTGCTATGTCTTCAATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* * *
14794832 GATCTGCTTTAGTATAAACATCTAAAGGTTAGACCTGCTATGTACCTACTCTCCGTCGAAATGGA
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGA
14794897 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
131 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
* * * * *
14794942 TGAAAATCAGATCTGCTATGTCTTCGATTTGTTCCCTGTAAAC-CAGGGATGCCAAATC
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATC
14795000 TGCTATCTTC
Statistics
Matches: 377, Mismatches: 30, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
174 13 0.03
175 361 0.96
176 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (175 bp):
TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
GATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGA
GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
Found at i:14794751 original size:86 final size:85
Alignment explanation
Indices: 14794476--14794945 Score: 237
Period size: 88 Copynumber: 5.4 Consensus size: 85
14794466 ATGCCAAATC
* * * *
14794476 ATCTTGGATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTGTTCTCCGTCG
1 ATCTTGGATCTGCTTTAGTATAAA-CATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCG
* *
14794540 AAATGGAGATGCTAAATCTGTT
65 AAATGGAGATGCCAGAT-TGTT
* * * * * * * * * * *
14794562 ATCTTGGATCTACTTTGGTGTAAGAACTTCTGAAAGTCAAATCTGCTATGT-CTTCGATTTGTTC
1 ATCTTGGATCTGCTTTAGTAT-A-AACATCTGAAGGTTAGACCTGCTATGTACCT-G--CT-CTC
* *** * *
14794626 C-TTGTAAACACAAGAATGCCA-A--ATC
60 CGTCG-AAA-TGGAG-ATGCCAGATTGTT
*
14794651 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGA
1 ATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGA
14794716 AATGGAGATGCCAGATTTGTT
66 AATGGAGATGCCAGA-TTGTT
* * * * * * * *
14794737 ATCTTGGATCTGCTTTGGTGTGAGGACATCCGAAAGTCAAATCTGCTATGT-CTTCAATTTG-T-
1 ATCTTGGATCTGCTTTAGTAT-A-AACATCTGAAGGTTAGACCTGCTATGTAC--C----TGCTC
* *** * *
14794799 TCC-TTGTAAACACAAGAATGCCA-A--ATC
58 TCCGTCG-AAA-TGGAG-ATGCCAGATTGTT
* *
14794826 ATCTTGGATCTGCTTTAGTATAAACATCTAAAGGTTAGACCTGCTATGTACCTACTCTCCGTCGA
1 ATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGA
14794891 AATGGAGATGCCAGATCTGTT
66 AATGGAGATGCCAGAT-TGTT
* *
14794912 ATCTTGGATCTGCTTTGGTGTGAGAACATCTGAA
1 ATCTTGGATCTGCTTTAGTAT-A-AACATCTGAA
14794946 AATCAGATCT
Statistics
Matches: 277, Mismatches: 70, Indels: 72
0.66 0.17 0.17
Matches are distributed among these distances:
82 13 0.05
83 7 0.03
84 12 0.04
85 5 0.02
86 56 0.20
87 47 0.17
88 58 0.21
89 41 0.15
90 6 0.02
91 12 0.04
92 7 0.03
93 13 0.05
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (85 bp):
ATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGA
AATGGAGATGCCAGATTGTT
Found at i:14794839 original size:89 final size:87
Alignment explanation
Indices: 14794379--14794999 Score: 254
Period size: 87 Copynumber: 7.1 Consensus size: 87
14794369 CAATACAGAG
* ** * *
14794379 ATGCCAAATCATCTTAGATCTGCTTCAGCGTA-AACA-CGTGAAAGCCAAATCTGCTATGTCTTT
1 ATGCCAAATCATCTTGGATCTGCTTTGGTGTAGAACATC-TGAAAGTCAAATCTGCTATGTC-TT
* * ** *
14794442 GATTTGCTCCTTGGGAACACAAGG
64 CATTTGTTCCTTGTAAACACAAGA
** * * * * *
14794466 ATGCCAAATCATCTTGGATCTGC-TT-CAGTAAAATCATCTGAAGGTTAGATCTGCTATGT-ATC
1 ATGCCAAATCATCTTGGATCTGCTTTGGTGTAGAA-CATCTGAAAGTCAAATCTGCTATGTCTTC
* * ***
14794528 -TGTT-CTCCGTCG-AAA-TGGAG-
65 AT-TTGTTCC-TTGTAAACACAAGA
* * *
14794548 ATGCTAAATCTGTTATCTTGGATCTACTTTGGTGTAAGAACTTCTGAAAGTCAAATCTGCTATGT
1 ATGCCAAATC----ATCTTGGATCTGCTTTGGTGT-AGAACATCTGAAAGTCAAATCTGCTATGT
14794613 CTTCGATTTGTTCCTTGTAAACACAAGA
61 CTTC-ATTTGTTCCTTGTAAACACAAGA
** * * * * *
14794641 ATGCCAAATCATCTTGGATCTGCTTCAGTATA-AACATCTGAAGGTTAGACCTGCTATGTAC--C
1 ATGCCAAATCATCTTGGATCTGCTTTGGTGTAGAACATCTGAAAGTCAAATCTGCTATGT-CTTC
* ***
14794703 ---TGCTCTCCGTCG-AAA-TGGAG-
65 ATTTG-T-TCC-TTGTAAACACAAGA
* * * *
14794723 ATGCCAGATTTGTTATCTTGGATCTGCTTTGGTGTGAGGACATCCGAAAGTCAAATCTGCTATGT
1 ATGCCA-A---ATCATCTTGGATCTGCTTTGGTGT-AGAACATCTGAAAGTCAAATCTGCTATGT
14794788 CTTCAATTTGTTCCTTGTAAACACAAGA
61 CTTC-ATTTGTTCCTTGTAAACACAAGA
* * * * * *
14794816 ATGCCAAATCATCTTGGATCTGCTTTAGTATA-AACATCT-AAAGGTTAGACCTGCTATGTACCT
1 ATGCCAAATCATCTTGGATCTGCTTTGGTGTAGAACATCTGAAA-GTCAAATCTGCTATGT-CTT
* * * ***
14794879 -A-CT-CTCCGTCG-AAA-TGGAG-
64 CATTTGTTCC-TTGTAAACACAAGA
* * *
14794898 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCTGAAAATCAGATCTGCTATGT
1 ATGCCAAATC----ATCTTGGATCTGCTTTGGTGT-AGAACATCTGAAAGTCAAATCTGCTATGT
* * *
14794963 CTTCGATTTGTTCCCTGTAAAC-CAGGG
61 CTTC-ATTTGTTCCTTGTAAACACAAGA
14794990 ATGCCAAATC
1 ATGCCAAATC
14795000 TGCTATCTTC
Statistics
Matches: 389, Mismatches: 90, Indels: 105
0.67 0.15 0.18
Matches are distributed among these distances:
82 26 0.07
83 8 0.02
84 19 0.05
85 13 0.03
86 58 0.15
87 88 0.23
88 70 0.18
89 47 0.12
90 8 0.02
91 20 0.05
92 15 0.04
93 17 0.04
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (87 bp):
ATGCCAAATCATCTTGGATCTGCTTTGGTGTAGAACATCTGAAAGTCAAATCTGCTATGTCTTCA
TTTGTTCCTTGTAAACACAAGA
Found at i:14795132 original size:132 final size:132
Alignment explanation
Indices: 14794950--14795265 Score: 503
Period size: 132 Copynumber: 2.4 Consensus size: 132
14794940 TCTGAAAATC
* * *
14794950 AGATCTGCTATGTCTTCGATTTGTTCCCTGTAAAC-CAGGGATGCCAAATCTGCTATCTTCAACT
1 AGATCTGCTA--TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACT
* * * *
14795014 TGTTCCCTATAAACACAGGGATGCCATGTTAAAATCTTTGATCTGTTTTGCTGTAAGCACAGGA-
64 TGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAG
14795078 ATGTCT
129 AT-T-T
14795084 -GATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACTTG
1 AGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACTTG
14795148 TTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGAT
66 TTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGAT
14795213 TT
131 TT
14795215 AGATCTGCTATCTTCGATCTGTTTCCCTATAAACACAGGGATGCCAAATCT
1 AGATCTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAAATCT
14795266 TGTTTCTTTG
Statistics
Matches: 171, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
131 22 0.13
132 109 0.64
133 40 0.23
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (132 bp):
AGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACTTG
TTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGAT
TT
Found at i:14795139 original size:44 final size:44
Alignment explanation
Indices: 14794962--14795265 Score: 244
Period size: 44 Copynumber: 6.9 Consensus size: 44
14794952 ATCTGCTATG
* * *
14794962 TCTTCGATTTGTTCCCTGTAAAC-CAGGGATGCCAAATCTGCTA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTA
* ** **
14795005 TCTTC-AACTTGTTCCCTATAAACACAGGGATGCCATGT-TAAAA
1 TCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAAATCTACTA
* ** * * * * ** *
14795048 TCTTTGATCTGTTTTGCTGTAAGCACAGGAATGTCTGATCTGCTA
1 TCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAAATCTACTA
14795093 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTA
* **
14795137 TCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--ATGCTAAAA
1 TCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAAAT-CTACTA
* * * ** * *
14795180 TCTTCGATCTGCTTCGCTGTAAGCACAGGAGAT-TTAGATCTGCTA
1 TCTTCGATCTG-TTCCCTATAAACACAGG-GATGCCAAATCTACTA
14795225 TCTTCGATCTGTTTCCCTATAAACACAGGGATGCCAAATCT
1 TCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAAATCT
14795266 TGTTTCTTTG
Statistics
Matches: 197, Mismatches: 51, Indels: 24
0.72 0.19 0.09
Matches are distributed among these distances:
42 3 0.02
43 39 0.20
44 105 0.53
45 48 0.24
46 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (44 bp):
TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTA
Found at i:14795207 original size:88 final size:88
Alignment explanation
Indices: 14795092--14795260 Score: 218
Period size: 89 Copynumber: 1.9 Consensus size: 88
14795082 CTGATCTGCT
14795092 ATCTTCGATCTGTTCCCTATAAACACAGG-GATGCCAAATCTACTATCTTCAA-CT-TGTTCCCT
1 ATCTTCGATCTGTTCCCTATAAACACAGGAGAT-CCAAATCTACTATCTTCAATCTGT-TTCCCT
14795154 ATAAACACAGGGATGCCATGCTAAA
64 ATAAACACAGGGATGCCATGCTAAA
* * * ** * * *
14795179 ATCTTCGATCTGCTTCGCTGTAAGCACAGGAGATTTAGATCTGCTATCTTCGATCTGTTTCCCTA
1 ATCTTCGATCTG-TTCCCTATAAACACAGGAGATCCAAATCTACTATCTTCAATCTGTTTCCCTA
14795244 TAAACACAGGGATGCCA
65 TAAACACAGGGATGCCA
14795261 AATCTTGTTT
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
87 12 0.17
88 28 0.40
89 29 0.41
90 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (88 bp):
ATCTTCGATCTGTTCCCTATAAACACAGGAGATCCAAATCTACTATCTTCAATCTGTTTCCCTAT
AAACACAGGGATGCCATGCTAAA
Found at i:14796174 original size:19 final size:18
Alignment explanation
Indices: 14796150--14796207 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 18
14796140 TTGGCCTCTC
14796150 CATTTTTGTTTTCTTTTTT
1 CATTTTT-TTTTCTTTTTT
14796169 CATTTTTTTTCTCTTTTTT
1 CATTTTTTTT-TCTTTTTT
*
14796188 CTTTTCTTTTTTCCTTTTTT
1 CATTT-TTTTTT-CTTTTTT
14796208 TTTTGAAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
18 3 0.09
19 20 0.57
20 12 0.34
ACGTcount: A:0.03, C:0.16, G:0.02, T:0.79
Consensus pattern (18 bp):
CATTTTTTTTTCTTTTTT
Found at i:14796178 original size:12 final size:11
Alignment explanation
Indices: 14796152--14796199 Score: 51
Period size: 12 Copynumber: 4.1 Consensus size: 11
14796142 GGCCTCTCCA
*
14796152 TTTTTGTTTTCT
1 TTTTTCTTTT-T
14796164 TTTTTCATTTTT
1 TTTTTC-TTTTT
*
14796176 TTTCTCTTTTT
1 TTTTTCTTTTT
14796187 TCTTTTCTTTTT
1 T-TTTTCTTTTT
14796199 T
1 T
14796200 CCTTTTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
11 6 0.19
12 21 0.68
13 4 0.13
ACGTcount: A:0.02, C:0.12, G:0.02, T:0.83
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:14796200 original size:12 final size:12
Alignment explanation
Indices: 14796165--14796211 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
14796155 TTGTTTTCTT
14796165 TTTTCATTTTTT-
1 TTTTC-TTTTTTC
*
14796177 TTCTCTTTTTTC
1 TTTTCTTTTTTC
14796189 TTTTCTTTTTTCC
1 TTTTCTTTTTT-C
14796202 TTTT-TTTTTT
1 TTTTCTTTTTT
14796212 GAAATAGAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
11 6 0.19
12 20 0.65
13 5 0.16
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTCTTTTTTC
Found at i:14798914 original size:40 final size:40
Alignment explanation
Indices: 14798811--14798907 Score: 194
Period size: 40 Copynumber: 2.4 Consensus size: 40
14798801 GAAGCTATGA
14798811 GTCTTTAAGCCCGGATAACATTCCAGCATATAGCCTGTGG
1 GTCTTTAAGCCCGGATAACATTCCAGCATATAGCCTGTGG
14798851 GTCTTTAAGCCCGGATAACATTCCAGCATATAGCCTGTGG
1 GTCTTTAAGCCCGGATAACATTCCAGCATATAGCCTGTGG
14798891 GTCTTTAAGCCCGGATA
1 GTCTTTAAGCCCGGATA
14798908 CAATTCCTCA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (40 bp):
GTCTTTAAGCCCGGATAACATTCCAGCATATAGCCTGTGG
Found at i:14806509 original size:40 final size:40
Alignment explanation
Indices: 14806438--14806583 Score: 188
Period size: 40 Copynumber: 3.7 Consensus size: 40
14806428 TACCAGCTCG
* * *
14806438 TAGCCTGCGGGTCTCT-AGCCCGGATAGCATTCTAGCACA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCTAGCATA
* * * *
14806477 AAGCCTGCAGGTCTTTAAGCCCAGATAACATTCCAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCTAGCATA
*
14806517 TAGCCTGCGTGTCTTTAAGCCCGGATAACATT-TCAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCT-AGCATA
*
14806557 TAGCCTACGGGTCTTTAAGCCCGGATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATA
14806584 CAATTCCTCA
Statistics
Matches: 91, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 13 0.14
40 78 0.86
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCTAGCATA
Found at i:14812485 original size:22 final size:21
Alignment explanation
Indices: 14812455--14812501 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
14812445 TACAAATTAA
14812455 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
14812477 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
14812498 ATCT
1 ATCT
14812502 ACGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:14812509 original size:19 final size:19
Alignment explanation
Indices: 14812472--14812569 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
14812462 AGATTACAAG
14812472 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
14812493 ATCATATCTACGATTGCAT
1 ATCATATCTAAGATTGCAT
14812512 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
14812529 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14812548 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14812567 ATC
1 ATC
14812570 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 17 0.23
19 47 0.64
20 1 0.01
21 8 0.11
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:14812536 original size:36 final size:37
Alignment explanation
Indices: 14812472--14812569 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
14812462 AGATTACAAG
*
14812472 ATCATATCTTCAAGATTGCATATCATATCTACGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
14812512 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
14812548 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
14812570 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:14815467 original size:26 final size:26
Alignment explanation
Indices: 14815433--14815545 Score: 127
Period size: 26 Copynumber: 4.3 Consensus size: 26
14815423 ACTGGGGCAC
**
14815433 AGCCCTTTTCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATA
*
14815459 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATA
* *** * *
14815485 AGCCTTTTTTGGTATACTGGGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATA
*
14815511 AGCCCTTTTCAATAAACTAAGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATA
*
14815537 AGCCTTTTT
1 AGCCCTTTT
14815546 TCACTTCCTC
Statistics
Matches: 71, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTAGGGCATA
Found at i:14815519 original size:52 final size:52
Alignment explanation
Indices: 14815414--14815546 Score: 182
Period size: 52 Copynumber: 2.6 Consensus size: 52
14815404 GGCCTATCCT
* * *
14815414 CTTTT-AAT-AACTGGGGCA-CAGCCCTTTTCGGTAAACTAGGGCATAAGCC
1 CTTTTCAATAAACTGGGGCATAAGCCTTTTTTGGTAAACTAGGGCATAAGCC
* *
14815463 CTTTTCAATAAACTGGGGCATAAGCCTTTTTTGGTATACTGGGGCATAAGCC
1 CTTTTCAATAAACTGGGGCATAAGCCTTTTTTGGTAAACTAGGGCATAAGCC
**
14815515 CTTTTCAATAAACTAAGGCATAAGCCTTTTTT
1 CTTTTCAATAAACTGGGGCATAAGCCTTTTTT
14815547 CACTTCCTCC
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
49 5 0.07
50 3 0.04
51 10 0.14
52 56 0.76
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (52 bp):
CTTTTCAATAAACTGGGGCATAAGCCTTTTTTGGTAAACTAGGGCATAAGCC
Found at i:14815619 original size:20 final size:20
Alignment explanation
Indices: 14815594--14815669 Score: 104
Period size: 20 Copynumber: 3.9 Consensus size: 20
14815584 TTTATGAATT
*
14815594 TATCATGTGCATTTCATACA
1 TATCATGTGCATATCATACA
*
14815614 TATCATGTGCATGTCATACA
1 TATCATGTGCATATCATACA
14815634 TATCATGTGCATATCATATCA
1 TATCATGTGCATATCATA-CA
14815655 T-TCATGT--ATATCATA
1 TATCATGTGCATATCATA
14815670 TCCCACGTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
18 8 0.15
20 42 0.79
21 3 0.06
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (20 bp):
TATCATGTGCATATCATACA
Found at i:14815646 original size:11 final size:11
Alignment explanation
Indices: 14815594--14815650 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
14815584 TTTATGAATT
14815594 TATCATGTGCA
1 TATCATGTGCA
* *
14815605 TTTCA--TACA
1 TATCATGTGCA
14815614 TATCATGTGCA
1 TATCATGTGCA
* *
14815625 TGTCA--TACA
1 TATCATGTGCA
14815634 TATCATGTGCA
1 TATCATGTGCA
14815645 TATCAT
1 TATCAT
14815651 ATCATTCATG
Statistics
Matches: 34, Mismatches: 8, Indels: 8
0.68 0.16 0.16
Matches are distributed among these distances:
9 14 0.41
11 20 0.59
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.39
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:14820141 original size:7 final size:7
Alignment explanation
Indices: 14820129--14820176 Score: 78
Period size: 7 Copynumber: 6.9 Consensus size: 7
14820119 TCAAGTAGTT
*
14820129 CATTGAA
1 CATTTAA
*
14820136 CATTGAA
1 CATTTAA
14820143 CATTTAA
1 CATTTAA
14820150 CATTTAA
1 CATTTAA
14820157 CATTTAA
1 CATTTAA
14820164 CATTTAA
1 CATTTAA
14820171 CATTTA
1 CATTTA
14820177 CTACAACCTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.40
Consensus pattern (7 bp):
CATTTAA
Found at i:14821540 original size:57 final size:57
Alignment explanation
Indices: 14821452--14821565 Score: 210
Period size: 57 Copynumber: 2.0 Consensus size: 57
14821442 TCTTTAACAG
* *
14821452 TTTCAAAAACGGAGATACGGGTTAGCTAGACCTAATTGTAGCGATCTCAAAAATATA
1 TTTCAAAAACAGAGATACGGGTTAGCTAGACCTAATTGTAACGATCTCAAAAATATA
14821509 TTTCAAAAACAGAGATACGGGTTAGCTAGACCTAATTGTAACGATCTCAAAAATATA
1 TTTCAAAAACAGAGATACGGGTTAGCTAGACCTAATTGTAACGATCTCAAAAATATA
14821566 AAAATTACAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (57 bp):
TTTCAAAAACAGAGATACGGGTTAGCTAGACCTAATTGTAACGATCTCAAAAATATA
Found at i:14824563 original size:19 final size:15
Alignment explanation
Indices: 14824522--14824551 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14824512 AAAAAACAAG
14824522 TGACACATTCAATCA
1 TGACACATTCAATCA
14824537 TGACACATTCAATCA
1 TGACACATTCAATCA
14824552 ATACGAACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.07, T:0.27
Consensus pattern (15 bp):
TGACACATTCAATCA
Found at i:14825311 original size:17 final size:17
Alignment explanation
Indices: 14825291--14825324 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14825281 TAAAATTTGT
14825291 TATTTTATAAATTTTTA
1 TATTTTATAAATTTTTA
* *
14825308 TATTTTTTTAATTTTTA
1 TATTTTATAAATTTTTA
14825325 ATATACATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TATTTTATAAATTTTTA
Found at i:14826639 original size:18 final size:17
Alignment explanation
Indices: 14826602--14826651 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 17
14826592 AAACGTTATT
*
14826602 AAAATTATAAAAATATTAA
1 AAAATTATTAAAA-ATT-A
14826621 ATAAATT-TTAAAAATTA
1 A-AAATTATTAAAAATTA
14826638 AAAATTATTAAAAA
1 AAAATTATTAAAAA
14826652 CCATTTAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
16 5 0.18
17 9 0.32
18 3 0.11
19 6 0.21
20 5 0.18
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAATTATTAAAAATTA
Found at i:14828942 original size:18 final size:18
Alignment explanation
Indices: 14828916--14828954 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
14828906 AGTGACAATA
*
14828916 AAGAAGCAGATGAGGAAG
1 AAGAAGCAGAGGAGGAAG
* *
14828934 AAGATGCAGAGGATGAAG
1 AAGAAGCAGAGGAGGAAG
14828952 AAG
1 AAG
14828955 GGGCAAGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.05, G:0.38, T:0.08
Consensus pattern (18 bp):
AAGAAGCAGAGGAGGAAG
Found at i:14832797 original size:18 final size:18
Alignment explanation
Indices: 14832776--14832821 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
14832766 AGGTGACAAT
*
14832776 GAAGGTGTAGGTGAGGAA
1 GAAGGTGTAGATGAGGAA
*
14832794 GAAGGTGCAGATGAGGAA
1 GAAGGTGTAGATGAGGAA
*
14832812 GAAGGCGTAG
1 GAAGGTGTAG
14832822 TGGAGGAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.35, C:0.04, G:0.48, T:0.13
Consensus pattern (18 bp):
GAAGGTGTAGATGAGGAA
Found at i:14835982 original size:15 final size:15
Alignment explanation
Indices: 14835962--14836014 Score: 61
Period size: 15 Copynumber: 3.3 Consensus size: 15
14835952 TATCATGATC
14835962 AATTATTTTAATAAG
1 AATTATTTTAATAAG
*
14835977 AATTATTTTAAATATGAT
1 AATTATTTT-AATA--AG
*
14835995 AATAATTTTAATAAG
1 AATTATTTTAATAAG
14836010 AATTA
1 AATTA
14836015 AGTCAAACAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
15 14 0.45
16 4 0.13
17 4 0.13
18 9 0.29
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (15 bp):
AATTATTTTAATAAG
Found at i:14836992 original size:11 final size:11
Alignment explanation
Indices: 14836976--14837004 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
14836966 CAAATAATCC
14836976 ATATTTTCTAA
1 ATATTTTCTAA
14836987 ATATTTTCTAA
1 ATATTTTCTAA
14836998 ATATTTT
1 ATATTTT
14837005 AATTAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (11 bp):
ATATTTTCTAA
Found at i:14837382 original size:17 final size:16
Alignment explanation
Indices: 14837349--14837393 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
14837339 ACTGTTATTG
14837349 ATATATTTTAATAAAAA
1 ATAT-TTTTAATAAAAA
*
14837366 ATATTTTTAACTTAAAA
1 ATATTTTTAA-TAAAAA
*
14837383 ATAGTTTTAAT
1 ATATTTTTAAT
14837394 GTTTTGAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 7 0.28
17 18 0.72
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (16 bp):
ATATTTTTAATAAAAA
Found at i:14842484 original size:9 final size:10
Alignment explanation
Indices: 14842463--14842503 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
14842453 ACCCAAAATA
14842463 AAAAAT-AA-
1 AAAAATGAAG
14842471 AAAAATGAAG
1 AAAAATGAAG
14842481 AAAAATGAAG
1 AAAAATGAAG
14842491 AAAAA-GAA-
1 AAAAATGAAG
14842499 AAAAA
1 AAAAA
14842504 CCTAATCTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
8 11 0.35
9 5 0.16
10 15 0.48
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.07
Consensus pattern (10 bp):
AAAAATGAAG
Found at i:14843692 original size:19 final size:19
Alignment explanation
Indices: 14843668--14843705 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14843658 TTGAGATTGC
*
14843668 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCCGAAAT
14843687 CAACCTATTTGCCCGAAAT
1 CAACCTATTTGCCCGAAAT
14843706 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.29, G:0.11, T:0.29
Consensus pattern (19 bp):
CAACCTATTTGCCCGAAAT
Found at i:14845833 original size:24 final size:24
Alignment explanation
Indices: 14845806--14845859 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
14845796 TTTCTTTCCT
*
14845806 TTGCATT-CATCCCATGCATTTGCA
1 TTGCATTGCATCACATGCA-TTGCA
**
14845830 TTGCATTGCATCATGTGCATTGCA
1 TTGCATTGCATCACATGCATTGCA
14845854 TTGCAT
1 TTGCAT
14845860 CATTTGCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (24 bp):
TTGCATTGCATCACATGCATTGCA
Found at i:14845848 original size:19 final size:19
Alignment explanation
Indices: 14845826--14845869 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
14845816 CCCATGCATT
14845826 TGCATTGCATTGCATCATG
1 TGCATTGCATTGCATCATG
*
14845845 TGCATTGCATTGCATCATT
1 TGCATTGCATTGCATCATG
14845864 TGCATT
1 TGCATT
14845870 AGATCTTCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.41
Consensus pattern (19 bp):
TGCATTGCATTGCATCATG
Found at i:14849689 original size:61 final size:64
Alignment explanation
Indices: 14849618--14849742 Score: 177
Period size: 61 Copynumber: 2.0 Consensus size: 64
14849608 CATATAATAA
* *
14849618 CACATCTAGTTAGGAGCATTTGATTCATTTC-A-TA-A-CATTCTAATTATTTGACATAAAGCAT
1 CACATCTAGTTAGGAACATTTGATTCATTTCAATTATAGCATCCTAATTATTTGACAT-AAGCAT
* *
14849679 CACATTTAGTTAGGAACATTTGATTCATTTCAATTATAGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAACATTTGATTCATTTCAATTATAGCATCCTAATTATTTGACATAAGCAT
14849743 GGATACATGA
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
61 29 0.52
62 1 0.02
63 2 0.04
64 7 0.12
65 17 0.30
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAACATTTGATTCATTTCAATTATAGCATCCTAATTATTTGACATAAGCAT
Found at i:14849987 original size:88 final size:88
Alignment explanation
Indices: 14849838--14850039 Score: 332
Period size: 88 Copynumber: 2.3 Consensus size: 88
14849828 AGCTGAAGAT
** * *
14849838 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGTAGATCGAAGACATAGCTAATTTGTCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCAAGGAGTAGATCGAAAACATAGCTAATTTGGCT
*
14849903 TTCACGTGTTTACGTTAAAGCAG
66 TTCACGTGTTTACGTTAAAGCAA
*
14849926 ATCCAAGATGATTTGGCATCTCTGTATCAGGCAAGGAGTAGATCGAAAACATAGCTGATTTGGCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCAAGGAGTAGATCGAAAACATAGCTAATTTGGCT
*
14849991 TTCACGTGTTTACGTTGAAGCAA
66 TTCACGTGTTTACGTTAAAGCAA
*
14850014 ATCCAAGATGATTTGGCATATCTGTA
1 ATCCAAGATGATTTGGCATCTCTGTA
14850040 GCAGCGGAGA
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 106 1.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.31
Consensus pattern (88 bp):
ATCCAAGATGATTTGGCATCTCTGTATCAGGCAAGGAGTAGATCGAAAACATAGCTAATTTGGCT
TTCACGTGTTTACGTTAAAGCAA
Found at i:14850082 original size:44 final size:44
Alignment explanation
Indices: 14850023--14850343 Score: 497
Period size: 44 Copynumber: 7.4 Consensus size: 44
14850013 AATCCAAGAT
* * *
14850023 GATTTGGCATATCTGTAGCAGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
14850067 GATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAATATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
14850111 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
14850155 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
14850195 GATTTGGCATCTCTGTAGTGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
14850239 GATTTGGCGTCTCTGTAGCGGTGGAGAGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
14850283 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
14850327 GATTTGGCGTCTCTGTA
1 GATTTGGCGTCTCTGTA
14850344 TTAGACGGGG
Statistics
Matches: 254, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
40 38 0.15
44 216 0.85
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.23
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:14850212 original size:172 final size:172
Alignment explanation
Indices: 14850009--14850343 Score: 553
Period size: 172 Copynumber: 1.9 Consensus size: 172
14849999 TTTACGTTGA
14850009 AGCAAATCCAAGATGATTTGGCATATCTGTAGCAGCGGAGAGCAGATCGAAGATAACAGATTTGG
1 AGCAAATCCAAGATGATTTGGCATATCTGTAGCAGCGGAGAGCAGATCGAAGATAACAGATTTGG
* * *
14850074 CGTCTCTGTAGCGGCGAAGAGCAGATCGAATATAGCAGATTTGGCGTCTCTGTAGCGGCAGAGAG
66 CGTCTCTGTAGCGGCGAAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAG
*
14850139 CAGATCGAAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAG
131 CAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAG
* * * **
14850181 AGCAGATCGAAGATGATTTGGCATCTCTGTAGTGGCGGAGAGCAGATCGAAGATAACAGATTTGG
1 AGCAAATCCAAGATGATTTGGCATATCTGTAGCAGCGGAGAGCAGATCGAAGATAACAGATTTGG
* * *
14850246 CGTCTCTGTAGCGGTGGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAG
66 CGTCTCTGTAGCGGCGAAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAG
*
14850311 CAGATCGAAGATAACGGATTTGGCGTCTCTGTA
131 CAGATCGAAGATAACAGATTTGGCGTCTCTGTA
14850344 TTAGACGGGG
Statistics
Matches: 150, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
172 150 1.00
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.22
Consensus pattern (172 bp):
AGCAAATCCAAGATGATTTGGCATATCTGTAGCAGCGGAGAGCAGATCGAAGATAACAGATTTGG
CGTCTCTGTAGCGGCGAAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAG
CAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAG
Found at i:14851955 original size:6 final size:7
Alignment explanation
Indices: 14851937--14851962 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14851927 CACTCCCTTT
14851937 TAAAAAA
1 TAAAAAA
14851944 TAAAAAA
1 TAAAAAA
14851951 TAAAAAA
1 TAAAAAA
14851958 TAAAA
1 TAAAA
14851963 TTTCAAAGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAAAAA
Found at i:14860742 original size:43 final size:43
Alignment explanation
Indices: 14860674--14860807 Score: 196
Period size: 43 Copynumber: 3.1 Consensus size: 43
14860664 AGTTTAAAAC
* * *
14860674 TTTTAGCGGCGCTTTTCACGAAAACGACGCTAAAGATCATGAA
1 TTTTAGCGGCGCTTTTCCCGCAAACGCCGCTAAAGATCATGAA
* * *
14860717 TTTTAGCGGCGTTTTTCCCTCAAACGCCGCTAAAGATCATGAC
1 TTTTAGCGGCGCTTTTCCCGCAAACGCCGCTAAAGATCATGAA
* *
14860760 CTTTAGCGGCGCTTTTCCCGCAAACGCCGCTAAAAATCATGAA
1 TTTTAGCGGCGCTTTTCCCGCAAACGCCGCTAAAGATCATGAA
14860803 TTTTA
1 TTTTA
14860808 AAAATTTATT
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 79 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (43 bp):
TTTTAGCGGCGCTTTTCCCGCAAACGCCGCTAAAGATCATGAA
Found at i:14860852 original size:22 final size:23
Alignment explanation
Indices: 14860827--14860869 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
14860817 TTTATTTTAA
*
14860827 TTAAATAATAT-TTATTTTTATG
1 TTAAATAATATATTATGTTTATG
*
14860849 TTAAATATTATATTATGTTTA
1 TTAAATAATATATTATGTTTA
14860870 ATTTTTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (23 bp):
TTAAATAATATATTATGTTTATG
Found at i:14864097 original size:10 final size:10
Alignment explanation
Indices: 14864084--14864117 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
14864074 AATTTTAATT
14864084 TTTTTTTATA
1 TTTTTTTATA
14864094 TTTTTTTATA
1 TTTTTTTATA
14864104 TTTTTTTAT-
1 TTTTTTTATA
14864113 TTTTT
1 TTTTT
14864118 CTTTCAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 5 0.21
10 19 0.79
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTTATA
Found at i:14864214 original size:7 final size:7
Alignment explanation
Indices: 14864202--14864229 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
14864192 ATATGGATTA
14864202 AAATATT
1 AAATATT
14864209 AAATATT
1 AAATATT
14864216 AAATATT
1 AAATATT
14864223 AAATATT
1 AAATATT
14864230 TAAGTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
AAATATT
Found at i:14864244 original size:7 final size:7
Alignment explanation
Indices: 14864234--14864288 Score: 110
Period size: 7 Copynumber: 7.9 Consensus size: 7
14864224 AATATTTAAG
14864234 TTTTTTA
1 TTTTTTA
14864241 TTTTTTA
1 TTTTTTA
14864248 TTTTTTA
1 TTTTTTA
14864255 TTTTTTA
1 TTTTTTA
14864262 TTTTTTA
1 TTTTTTA
14864269 TTTTTTA
1 TTTTTTA
14864276 TTTTTTA
1 TTTTTTA
14864283 TTTTTT
1 TTTTTT
14864289 TTAAATTTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 48 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTTA
Found at i:14864304 original size:14 final size:14
Alignment explanation
Indices: 14864240--14864312 Score: 64
Period size: 14 Copynumber: 5.4 Consensus size: 14
14864230 TAAGTTTTTT
**
14864240 ATTTTTTATTTTTT
1 ATTTTTTATTTTAA
**
14864254 ATTTTTTATTTTTT
1 ATTTTTTATTTTAA
14864268 ATTTTTTATTTT--
1 ATTTTTTATTTTAA
14864280 -TTATTTT-TTTTAA
1 ATT-TTTTATTTTAA
14864293 ATTTTTTATTTTTAA
1 ATTTTTTA-TTTTAA
14864308 ATTTT
1 ATTTT
14864313 AAAATTTTTT
Statistics
Matches: 53, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.11
12 4 0.08
13 4 0.08
14 28 0.53
15 11 0.21
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
ATTTTTTATTTTAA
Found at i:14864305 original size:1 final size:1
Alignment explanation
Indices: 14864234--14864290 Score: 51
Period size: 1 Copynumber: 57.0 Consensus size: 1
14864224 AATATTTAAG
* * * * * * *
14864234 TTTTTTATTTTTTATTTTTTATTTTTTATTTTTTATTTTTTATTTTTTATTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
14864291 AAATTTTTTA
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (1 bp):
T
Found at i:14865468 original size:41 final size:41
Alignment explanation
Indices: 14865422--14865558 Score: 170
Period size: 41 Copynumber: 3.4 Consensus size: 41
14865412 GTTATATAAC
* *
14865422 TTTTAGTGGCGTTTTACTAAAAGCGCCGCTAATGCTCTAGT
1 TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCTAGT
* *
14865463 CTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GT
1 TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCTAGT
** * * *
14865503 TTTTAGTAGTGTTTTAACAAAAAACGCCGCTATTGCTC-AGT
1 TTTTAGCGGCGTTTT-ACAAAAAGCGCCGCTAATGCTCTAGT
14865544 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
14865559 TGTTAAAACG
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
40 13 0.16
41 68 0.84
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.36
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCTAGT
Found at i:14865580 original size:81 final size:82
Alignment explanation
Indices: 14865422--14865589 Score: 198
Period size: 81 Copynumber: 2.1 Consensus size: 82
14865412 GTTATATAAC
* * *
14865422 TTTTAGTGGCGTTTTACTAAAAGCGCCGCTAATGCTCTAGTCTTTAGCGGCGTTTTACCAAAAGC
1 TTTTAGTAGCGTTTTACAAAAAACGCCGCTAATGCTCTAGTCTTTAGCGGCGTTTTACCAAAAGC
*
14865487 GCCGCTAATGCTCTGT-
66 GCCACTAATGCTCTGTG
* * * ***
14865503 TTTTAGTAGTGTTTTAACAAAAAACGCCGCTATTGCTC-AGTTTTTAGCGGCGTTTTTGTTAAAA
1 TTTTAGTAGCGTTTT-ACAAAAAACGCCGCTAATGCTCTAGTCTTTAGCGGCG-TTTTACCAAAA
*
14865567 -CGCCACTATTGCTCTGTG
64 GCGCCACTAATGCTCTGTG
14865585 TTTTA
1 TTTTA
14865590 CAATTTTTAA
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 41 0.56
82 32 0.44
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (82 bp):
TTTTAGTAGCGTTTTACAAAAAACGCCGCTAATGCTCTAGTCTTTAGCGGCGTTTTACCAAAAGC
GCCACTAATGCTCTGTG
Found at i:14868259 original size:16 final size:16
Alignment explanation
Indices: 14868238--14868268 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14868228 GTCTACTGGG
*
14868238 TTTAATTAATATTTTA
1 TTTAATTAAAATTTTA
14868254 TTTAATTAAAATTTT
1 TTTAATTAAAATTTT
14868269 GTTTTTAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTAATTAAAATTTTA
Found at i:14869671 original size:5 final size:5
Alignment explanation
Indices: 14869652--14869686 Score: 52
Period size: 5 Copynumber: 6.6 Consensus size: 5
14869642 CTGTGTGTTC
14869652 TTTATT TTTATT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTA-T TTTA-T TTTAT TTTAT TTTAT TTTAT TTT
14869687 CATAAATTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 19 0.66
6 10 0.34
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTAT
Found at i:14874104 original size:18 final size:18
Alignment explanation
Indices: 14874077--14874113 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
14874067 AGAGTGAAAG
14874077 AAACGAG-AAATGGGCCA
1 AAACGAGAAAATGGGCCA
14874094 AAACGGAGAAAATGGGCCA
1 AAAC-GAGAAAATGGGCCA
14874113 A
1 A
14874114 CGTACGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 3 0.17
19 11 0.61
ACGTcount: A:0.49, C:0.16, G:0.30, T:0.05
Consensus pattern (18 bp):
AAACGAGAAAATGGGCCA
Found at i:14876554 original size:46 final size:46
Alignment explanation
Indices: 14876461--14876579 Score: 148
Period size: 46 Copynumber: 2.6 Consensus size: 46
14876451 TTTATGCCTA
*
14876461 AAAATGAGTAAGACCATAGCTGAAAGATGTTATAGCATCATAATAG
1 AAAATGAGTAAGACCATAGCTGAAAGATGCTATAGCATCATAATAG
* * ** **
14876507 AAAATGAGTGAGACCATAGCTGAAAGATGCTATGGCATTTTGGTAG
1 AAAATGAGTAAGACCATAGCTGAAAGATGCTATAGCATCATAATAG
* * *
14876553 AAGATGAATAAGACCATAGTTGAAAGA
1 AAAATGAGTAAGACCATAGCTGAAAGA
14876580 CGTCATGGTA
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 62 1.00
ACGTcount: A:0.43, C:0.10, G:0.24, T:0.24
Consensus pattern (46 bp):
AAAATGAGTAAGACCATAGCTGAAAGATGCTATAGCATCATAATAG
Found at i:14878493 original size:35 final size:35
Alignment explanation
Indices: 14878454--14878549 Score: 140
Period size: 35 Copynumber: 2.7 Consensus size: 35
14878444 AAAAGTTATA
* *
14878454 ACACGTAGGTATGGTATTATCCATACTGAGCTATG
1 ACACGTAGGTATGGTATTATCCATACTAACCTATG
*
14878489 ACACGTAAGTATGGTATTATCCATACTAACCTATG
1 ACACGTAGGTATGGTATTATCCATACTAACCTATG
*
14878524 ATACGTAGGTATGGTATT-TCCCATAC
1 ACACGTAGGTATGGTATTAT-CCATAC
14878550 CGAGTTGTGA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
34 1 0.02
35 54 0.98
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (35 bp):
ACACGTAGGTATGGTATTATCCATACTAACCTATG
Found at i:14878565 original size:35 final size:35
Alignment explanation
Indices: 14878456--14878566 Score: 134
Period size: 35 Copynumber: 3.2 Consensus size: 35
14878446 AAGTTATAAC
*
14878456 ACGTAGGTATGGTATTATCCATACTGAGCTATGAC
1 ACGTAGGTATGGTATTATCCATACTGAGCTATGAA
* * * *
14878491 ACGTAAGTATGGTATTATCCATACTAACCTATGAT
1 ACGTAGGTATGGTATTATCCATACTGAGCTATGAA
* * *
14878526 ACGTAGGTATGGTATT-TCCCATACCGAGTTGTGAA
1 ACGTAGGTATGGTATTAT-CCATACTGAGCTATGAA
14878561 ACGTAG
1 ACGTAG
14878567 CCATATTGAG
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
34 1 0.02
35 63 0.98
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.32
Consensus pattern (35 bp):
ACGTAGGTATGGTATTATCCATACTGAGCTATGAA
Found at i:14885364 original size:35 final size:35
Alignment explanation
Indices: 14885325--14885486 Score: 211
Period size: 35 Copynumber: 4.7 Consensus size: 35
14885315 GTTATGACAT
*
14885325 GTAGGTATGGTATTATCCATACTGAGCCATGATAC
1 GTAGGTATGGTATTATCCATACTGAGCTATGATAC
* * *
14885360 GTAGGTATGGTATTATCTATACTAATCTATGATAC
1 GTAGGTATGGTATTATCCATACTGAGCTATGATAC
*
14885395 GTAGGTATGGTATT-TCCATACTGAGCTATAATAC
1 GTAGGTATGGTATTATCCATACTGAGCTATGATAC
* * * *
14885429 GTAGGTATGATATT-TCCCATACTGAGTTGTGAAAC
1 GTAGGTATGGTATTAT-CCATACTGAGCTATGATAC
*
14885464 GTAGGTATGGTATTAACCATACT
1 GTAGGTATGGTATTATCCATACT
14885487 TATAGTGTTG
Statistics
Matches: 110, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
34 30 0.27
35 80 0.73
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (35 bp):
GTAGGTATGGTATTATCCATACTGAGCTATGATAC
Found at i:14885436 original size:69 final size:70
Alignment explanation
Indices: 14885316--14885486 Score: 213
Period size: 69 Copynumber: 2.5 Consensus size: 70
14885306 CATGGCAAAG
* * * * *
14885316 TTATGACATGTAGGTATGGTATTATCCATACTGAGCCATGATACGTAGGTATGGTATTAT-CTAT
1 TTATGAAACGTAGGTATGGTATTATCCATACTGAGCCATAATACGTAGGTATGATATT-TCCCAT
14885380 ACT-AA
65 ACTGAA
* *
14885385 TCTATGATACGTAGGTATGGTATT-TCCATACTGAGCTATAATACGTAGGTATGATATTTCCCAT
1 T-TATGAAACGTAGGTATGGTATTATCCATACTGAGCCATAATACGTAGGTATGATATTTCCCAT
*
14885449 ACTGAG
65 ACTGAA
* *
14885455 TTGTGAAACGTAGGTATGGTATTAACCATACT
1 TTATGAAACGTAGGTATGGTATTATCCATACT
14885487 TATAGTGTTG
Statistics
Matches: 88, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
68 1 0.01
69 58 0.66
70 29 0.33
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (70 bp):
TTATGAAACGTAGGTATGGTATTATCCATACTGAGCCATAATACGTAGGTATGATATTTCCCATA
CTGAA
Found at i:14896511 original size:22 final size:22
Alignment explanation
Indices: 14896486--14896557 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
14896476 CATAATAATA
14896486 GAAAATGAGTAAAACCATAGTT
1 GAAAATGAGTAAAACCATAGTT
*** * *
14896508 GAAAGATGCTA-TGGCATCATAGTA
1 GAAA-ATG--AGTAAAACCATAGTT
*
14896532 GAAAATGAGTAAGACCATAGTT
1 GAAAATGAGTAAAACCATAGTT
14896554 GAAA
1 GAAA
14896558 TGTGCTATGG
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
21 1 0.03
22 16 0.44
23 6 0.17
24 12 0.33
25 1 0.03
ACGTcount: A:0.46, C:0.10, G:0.22, T:0.22
Consensus pattern (22 bp):
GAAAATGAGTAAAACCATAGTT
Found at i:14896528 original size:24 final size:24
Alignment explanation
Indices: 14896501--14896573 Score: 64
Period size: 24 Copynumber: 3.1 Consensus size: 24
14896491 TGAGTAAAAC
14896501 CATAGTTGAAAGATGCTATGGCAT
1 CATAGTTGAAAGATGCTATGGCAT
* * * *
14896525 CATAGTAGAAA-ATGAGTA-AG-AC
1 CATAGTTGAAAGATG-CTATGGCAT
14896547 CATAGTTGAAATG-TGCTATGGCAT
1 CATAGTTGAAA-GATGCTATGGCAT
14896571 CAT
1 CAT
14896574 GTGAAATCAC
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
22 13 0.36
23 7 0.19
24 16 0.44
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.27
Consensus pattern (24 bp):
CATAGTTGAAAGATGCTATGGCAT
Found at i:14896571 original size:46 final size:46
Alignment explanation
Indices: 14896439--14896573 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
14896429 GCTATACACC
* * *
14896439 TAGAAAA-GAGTAAGACCATAGCTGAAAGATTCTATGGCATAATAA
1 TAGAAAATGAGTAAGACCATAGTTGAAAGATGCTATGGCATCATAA
* *
14896484 TAGAAAATGAGTAAAACCATAGTTGAAAGATGCTATGGCATCATAG
1 TAGAAAATGAGTAAGACCATAGTTGAAAGATGCTATGGCATCATAA
14896530 TAGAAAATGAGTAAGACCATAGTTGAAATG-TGCTATGGCATCAT
1 TAGAAAATGAGTAAGACCATAGTTGAAA-GATGCTATGGCATCAT
14896574 GTGAAATCAC
Statistics
Matches: 82, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
45 7 0.09
46 74 0.90
47 1 0.01
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.24
Consensus pattern (46 bp):
TAGAAAATGAGTAAGACCATAGTTGAAAGATGCTATGGCATCATAA
Found at i:14907508 original size:45 final size:46
Alignment explanation
Indices: 14907256--14907570 Score: 177
Period size: 49 Copynumber: 6.7 Consensus size: 46
14907246 AGGGTATAAT
* *
14907256 GCCGATGCCATGTCCCAGACATGGTTTTACACTGGC-T-CATCCATCAA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTTACAT-C-TCAA
* * * * * *
14907303 GTCGATGCCATGTCCCAAACATGGTTTTACACT-GACTATCGAAATC-GAG
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAG-CT-T--ACATCTCAA
* * * * **
14907352 GCCGATGTCATGTCCCAAACATAGTCTTACACTAGATCT-CAATATCTGT
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCT-TAC-ATCTC-AA
* *
14907401 GCCGATACCATGTCCTAGACATGGTCTTACACT-GAC--ACATCTCATA
1 GCCGAT-GCATGTCCCAGACATGGTCTTACACTAG-CTTACATCTCA-A
* *
14907447 GCCAATGCATGGCCCAGACAT-GTCTTACACTAGCTTACATCTCAA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCAA
* * *
14907492 GGCCGATGCA-GTCCCAGACAT-GTCTTATACTAGCTCT-CATTTCTAT
1 -GCCGATGCATGTCCCAGACATGGTCTTACACTAGCT-TACATCTC-AA
*
14907538 GCCGATGCCATATCCCAGACATGGTCTTACACT
1 GCCGATG-CATGTCCCAGACATGGTCTTACACT
14907571 GGCTCTCATA
Statistics
Matches: 210, Mismatches: 35, Indels: 45
0.72 0.12 0.16
Matches are distributed among these distances:
44 11 0.05
45 49 0.23
46 30 0.14
47 45 0.21
48 10 0.05
49 61 0.29
50 1 0.00
51 1 0.00
52 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCAA
Found at i:14909982 original size:29 final size:27
Alignment explanation
Indices: 14909913--14909982 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 27
14909903 ACACGCCAAA
* *
14909913 AAAAGAAAGCCTTTGTAGCGGTCTATG
1 AAAAGGAAGCCTTTGTAGCGATCTATG
* *
14909940 AAAAGGAAGCCTTTGTGGTGATCTATG
1 AAAAGGAAGCCTTTGTAGCGATCTATG
14909967 AAAGAGGGAAGCCTTT
1 AAA-A-GGAAGCCTTT
14909983 TTGGCATACC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 26 0.70
28 1 0.03
29 10 0.27
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.26
Consensus pattern (27 bp):
AAAAGGAAGCCTTTGTAGCGATCTATG
Found at i:14913329 original size:74 final size:73
Alignment explanation
Indices: 14913201--14913341 Score: 169
Period size: 74 Copynumber: 1.9 Consensus size: 73
14913191 AATTAACTTA
* * *
14913201 ATTATTTAATTTTGTCACAATTGATTATGATTTTAATATCGAAAATTTAGTCATAAACAAATTGA
1 ATTATTTAATTTTGTCACAATTGATTATGAATTTAATATAGAAAATTTAGTCATAAA-AAATTAA
14913266 ATAATTACC
65 ATAATTACC
* * * * *
14913275 ATTATTTGATTTTGTCACAATT-ACTTAT-AATTTAGTGTTAGAAATTTTATTCATAAAAAATTA
1 ATTATTTAATTTTGTCACAATTGA-TTATGAATTTAAT-ATAGAAAATTTAGTCATAAAAAATTA
14913338 AATA
64 AATA
14913342 CTTTTACCCA
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
73 16 0.28
74 41 0.72
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (73 bp):
ATTATTTAATTTTGTCACAATTGATTATGAATTTAATATAGAAAATTTAGTCATAAAAAATTAAA
TAATTACC
Found at i:14913518 original size:71 final size:73
Alignment explanation
Indices: 14913432--14913573 Score: 180
Period size: 73 Copynumber: 2.0 Consensus size: 73
14913422 TTTTTTTCCT
* ** * *
14913432 CAATTTCTTACAATTTCAGTGTTTAAAATTTGG-C-TAAAAAATTGAATACTTATGATCATTTAT
1 CAATTGCTTACAATTTCAGTGTCGAAAATTTGGTCACAAAAAATTAAATACTTATGATCATTTAT
14913495 TTTTGTTG
66 TTTTGTTG
* * * * *
14913503 CAATTGCTTATAATTTTAGTGTCGATAATTTGGTCACAAAAAATTAAATATTTGTGATCATTTAT
1 CAATTGCTTACAATTTCAGTGTCGAAAATTTGGTCACAAAAAATTAAATACTTATGATCATTTAT
14913568 TTTTGT
66 TTTTGT
14913574 CACAAATGTT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
71 27 0.46
72 1 0.02
73 31 0.53
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.46
Consensus pattern (73 bp):
CAATTGCTTACAATTTCAGTGTCGAAAATTTGGTCACAAAAAATTAAATACTTATGATCATTTAT
TTTTGTTG
Found at i:14920090 original size:18 final size:16
Alignment explanation
Indices: 14920067--14920101 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
14920057 AATTTAACTT
14920067 TAATTAAATTATTTAAAA
1 TAATT-AATT-TTTAAAA
14920085 TAATTAATTTTTAAAA
1 TAATTAATTTTTAAAA
14920101 T
1 T
14920102 TGTAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 4 0.24
18 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATTAATTTTTAAAA
Found at i:14922657 original size:3 final size:3
Alignment explanation
Indices: 14922643--14922724 Score: 155
Period size: 3 Copynumber: 27.3 Consensus size: 3
14922633 GAAGAAAGCC
*
14922643 AAG AAA AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
14922691 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
14922725 GAAAAGACAT
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 77 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:14922807 original size:3 final size:3
Alignment explanation
Indices: 14922801--14922827 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
14922791 TTTTACAATC
14922801 TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT
14922828 CTGTTAAGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:14924794 original size:25 final size:24
Alignment explanation
Indices: 14924759--14924899 Score: 97
Period size: 25 Copynumber: 5.7 Consensus size: 24
14924749 ACACACCACA
* *
14924759 GCTCTCTTGAGCTTCCTGATACTTG
1 GCTCTCATGAGCTTCCCGATA-TTG
*
14924784 GCTCTCATGAGCTTCCCGATATTT
1 GCTCTCATGAGCTTCCCGATATTG
14924808 G-TCTCATAAGAGCTTCCCGATATTTG
1 GCTCTCAT--GAGCTTCCCGATA-TTG
* * * **
14924834 GCTCACAAGAGCTTCTCGATATACA
1 GCTCTCATGAGCTTCCCGATAT-TG
* * *
14924859 GCTCGT-ATGAGCTTTCCGTTACTTA
1 GCTC-TCATGAGCTTCCCGATA-TTG
*
14924884 GCTCACATGAGCTTCC
1 GCTCTCATGAGCTTCC
14924900 AGTTATATGG
Statistics
Matches: 91, Mismatches: 17, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
23 6 0.07
24 4 0.04
25 73 0.80
26 4 0.04
27 4 0.04
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (24 bp):
GCTCTCATGAGCTTCCCGATATTG
Found at i:14924913 original size:50 final size:49
Alignment explanation
Indices: 14924767--14924924 Score: 145
Period size: 50 Copynumber: 3.2 Consensus size: 49
14924757 CAGCTCTCTT
* * * * *
14924767 GAGCTTCCTGATACTTGGCTCTCATGAGCTTCCCGATATTTGTCTCATAA
1 GAGCTTCCCGATACTTGGCTCACATGAGCTT-CCGATATATGGCTCGTAA
* * ** *
14924817 GAGCTTCCCGATATTTGGCTCACAAGAGCTTCTCGATATACAGCTCGTAT
1 GAGCTTCCCGATACTTGGCTCACATGAGCTTC-CGATATATGGCTCGTAA
* * * * *
14924867 GAGCTTTCCGTTACTTAGCTCACATGAGCTTCCAGTTATATGGCTCGGAA
1 GAGCTTCCCGATACTTGGCTCACATGAGCTTCC-GATATATGGCTCGTAA
*
14924917 GATCTTCC
1 GAGCTTCC
14924925 TGTTTACATG
Statistics
Matches: 84, Mismatches: 22, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
49 2 0.02
50 82 0.98
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.33
Consensus pattern (49 bp):
GAGCTTCCCGATACTTGGCTCACATGAGCTTCCGATATATGGCTCGTAA
Found at i:14925375 original size:54 final size:54
Alignment explanation
Indices: 14925314--14925422 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
14925304 AATTTCCTTG
*
14925314 TTATACGAACTTACTAAGCTTAAATGCTTACTCTATGTTATTTTTCATGTTTTA
1 TTATACGAACTTACTAAGCTTAAATGCTTACTCAATGTTATTTTTCATGTTTTA
14925368 TTATACGAACTTACTAAGCTTAAATGCTTACTCAATGTTATTTTTCATGTTTTA
1 TTATACGAACTTACTAAGCTTAAATGCTTACTCAATGTTATTTTTCATGTTTTA
14925422 T
1 T
14925423 AGTAATTCAG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.28, C:0.15, G:0.09, T:0.48
Consensus pattern (54 bp):
TTATACGAACTTACTAAGCTTAAATGCTTACTCAATGTTATTTTTCATGTTTTA
Found at i:14932004 original size:27 final size:27
Alignment explanation
Indices: 14931974--14932111 Score: 167
Period size: 27 Copynumber: 5.1 Consensus size: 27
14931964 GTGATGAAGT
14931974 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
14932001 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* * *
14932028 CACTAGAT-CAGATAATCGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
14932055 CACCAGA-ACATATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
14932082 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
14932109 CAC
1 CAC
14932112 TAGGACGTTT
Statistics
Matches: 95, Mismatches: 9, Indels: 14
0.81 0.08 0.12
Matches are distributed among these distances:
26 10 0.11
27 81 0.85
28 4 0.04
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:14932058 original size:54 final size:54
Alignment explanation
Indices: 14931974--14932111 Score: 224
Period size: 54 Copynumber: 2.6 Consensus size: 54
14931964 GTGATGAAGT
*
14931974 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* * *
14932028 CACTAGATCAGATAATCGTGGCATAGCCACCAGAACATATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
14932082 CACCAGATCAGATAATTGTGGCATAGCCAC
1 CACCAGATCAGATAATTGTGGCATAGCCAC
14932112 TAGGACGTTT
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 72 0.94
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:14933733 original size:26 final size:26
Alignment explanation
Indices: 14933702--14933809 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
14933692 TGAAATGCCC
*
14933702 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
14933728 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
14933754 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
14933780 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
14933806 ATCA
1 ATCA
14933810 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:14933928 original size:30 final size:30
Alignment explanation
Indices: 14933892--14933951 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
14933882 AAAATGGGAG
14933892 GTTTGTCATGCAAATCCTCCTATTTTGCAC
1 GTTTGTCATGCAAATCCTCCTATTTTGCAC
14933922 GTTTGTCATGCAAATCCTCCTATTTTGCAC
1 GTTTGTCATGCAAATCCTCCTATTTTGCAC
14933952 TCCTATTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (30 bp):
GTTTGTCATGCAAATCCTCCTATTTTGCAC
Found at i:14938061 original size:25 final size:25
Alignment explanation
Indices: 14938024--14938087 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
14938014 ACAGCTCTCT
* *
14938024 TGAGCTTCACGATACTTGGCTTTA-A
1 TGAGCTTCCCGATACTTGGC-TCACA
*
14938049 TGAGCTTCCCGATATTTGGCTCACA
1 TGAGCTTCCCGATACTTGGCTCACA
*
14938074 AGAGCTTCCCGATA
1 TGAGCTTCCCGATA
14938088 TATAGCTCGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 2 0.06
25 32 0.94
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.31
Consensus pattern (25 bp):
TGAGCTTCCCGATACTTGGCTCACA
Found at i:14938088 original size:25 final size:25
Alignment explanation
Indices: 14938050--14938131 Score: 94
Period size: 25 Copynumber: 3.3 Consensus size: 25
14938040 TGGCTTTAAT
*
14938050 GAGCTTCCCGATATTTGGCTCACAA
1 GAGCTTCCCGATATATGGCTCACAA
* ** *
14938075 GAGCTTCCCGATATATAGCTCGTAT
1 GAGCTTCCCGATATATGGCTCACAA
*
14938100 GAGCTTCCC-ATTATATGGCTCAGAA
1 GAGCTTCCCGA-TATATGGCTCACAA
14938125 GAGCTTC
1 GAGCTTC
14938132 TTGTTTACAT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
24 1 0.02
25 46 0.98
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (25 bp):
GAGCTTCCCGATATATGGCTCACAA
Found at i:14942563 original size:28 final size:28
Alignment explanation
Indices: 14942531--14942602 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
14942521 ATATTCAATA
14942531 CATGTTATTTTAATTGTGTTACTACCTC
1 CATGTTATTTTAATTGTGTTACTACCTC
**
14942559 CATGTTATTTTAATCATGTTACTACCTC
1 CATGTTATTTTAATTGTGTTACTACCTC
14942587 CATGTTA--TTAATTGTG
1 CATGTTATTTTAATTGTG
14942603 CATTTCATCT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 7 0.17
28 33 0.82
ACGTcount: A:0.24, C:0.17, G:0.11, T:0.49
Consensus pattern (28 bp):
CATGTTATTTTAATTGTGTTACTACCTC
Found at i:14944191 original size:17 final size:17
Alignment explanation
Indices: 14944169--14944203 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14944159 CCAACAATCA
14944169 AAGAAAAATG-AAAAGAG
1 AAGAAAAA-GAAAAAGAG
14944186 AAGAAAAAGAAAAAGAG
1 AAGAAAAAGAAAAAGAG
14944203 A
1 A
14944204 TGATCAAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 1 0.06
17 16 0.94
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (17 bp):
AAGAAAAAGAAAAAGAG
Found at i:14945251 original size:20 final size:20
Alignment explanation
Indices: 14945228--14945266 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14945218 TATCGATACT
*
14945228 TTTCTTAAAGTATCAATATA
1 TTTCCTAAAGTATCAATATA
*
14945248 TTTCCTAAGGTATCAATAT
1 TTTCCTAAAGTATCAATAT
14945267 TTCTACTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.13, G:0.08, T:0.44
Consensus pattern (20 bp):
TTTCCTAAAGTATCAATATA
Found at i:14947455 original size:10 final size:11
Alignment explanation
Indices: 14947416--14947457 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
14947406 TATTTACGAA
*
14947416 GTTAATTGAGTG
1 GTTAATT-AGAG
14947428 GTTAATTAGAG
1 GTTAATTAGAG
*
14947439 TTTAATTA-AG
1 GTTAATTAGAG
14947449 GTTAATTAG
1 GTTAATTAG
14947458 GTATAAAGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
10 9 0.35
11 10 0.38
12 7 0.27
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.43
Consensus pattern (11 bp):
GTTAATTAGAG
Found at i:14950728 original size:76 final size:76
Alignment explanation
Indices: 14950602--14950750 Score: 271
Period size: 76 Copynumber: 2.0 Consensus size: 76
14950592 AACTCATAAG
* *
14950602 GTGATGTTGGGATTACCAGTCCAGGCTAAATCCCTTATAGCAACAAACACCCTTAATGAGATCGG
1 GTGATGTCGAGATTACCAGTCCAGGCTAAATCCCTTATAGCAACAAACACCCTTAATGAGATCGG
14950667 ATCTGAATGAC
66 ATCTGAATGAC
*
14950678 GTGATGTCGAGATTACCAGTCCAGGCTAAATCCCTTATAGCAACAAACACCCTTAATGAGCTCGG
1 GTGATGTCGAGATTACCAGTCCAGGCTAAATCCCTTATAGCAACAAACACCCTTAATGAGATCGG
14950743 ATCTGAAT
66 ATCTGAAT
14950751 TACCAATCCA
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 70 1.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (76 bp):
GTGATGTCGAGATTACCAGTCCAGGCTAAATCCCTTATAGCAACAAACACCCTTAATGAGATCGG
ATCTGAATGAC
Found at i:14962876 original size:25 final size:25
Alignment explanation
Indices: 14962848--14962896 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
14962838 AATGAGTTTG
* *
14962848 CCACAAGGGTTTTCTAGAGAATTCA
1 CCACAAAGGCTTTCTAGAGAATTCA
*
14962873 CCACAAAGGCTTTCTAGATAATTC
1 CCACAAAGGCTTTCTAGAGAATTC
14962897 GTGTTTACTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (25 bp):
CCACAAAGGCTTTCTAGAGAATTCA
Found at i:14963662 original size:21 final size:20
Alignment explanation
Indices: 14963620--14963663 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
14963610 GAAGAAGAAG
* * *
14963620 AAAAAGAGAACGTTGACGTT
1 AAAAAGAGAACCTGGACATT
14963640 AAAAAGAAGAACCTGGACATT
1 AAAAAG-AGAACCTGGACATT
14963661 AAA
1 AAA
14963664 TAGATAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.52, C:0.11, G:0.20, T:0.16
Consensus pattern (20 bp):
AAAAAGAGAACCTGGACATT
Found at i:14969088 original size:12 final size:12
Alignment explanation
Indices: 14969066--14969165 Score: 50
Period size: 12 Copynumber: 8.4 Consensus size: 12
14969056 ATTAATTATT
14969066 AACATTGTTCATG
1 AACA-TGTTCATG
14969079 AACATGTTCAAT-
1 AACATGTTC-ATG
* *
14969091 TATATGTTCATG
1 AACATGTTCATG
*
14969103 AACATGTT-AGTT
1 AACATGTTCA-TG
* *
14969115 TA-ATGTTCGTG
1 AACATGTTCATG
14969126 AACATGTTCGAT-
1 AACATGTTC-ATG
* *
14969138 TA-A-GTTAAATG
1 AACATGTT-CATG
14969149 AACATGTTCATG
1 AACATGTTCATG
14969161 AACAT
1 AACAT
14969166 TAAACAAACG
Statistics
Matches: 63, Mismatches: 14, Indels: 21
0.64 0.14 0.21
Matches are distributed among these distances:
10 5 0.08
11 12 0.19
12 36 0.57
13 10 0.16
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (12 bp):
AACATGTTCATG
Found at i:14969127 original size:23 final size:24
Alignment explanation
Indices: 14969071--14969158 Score: 94
Period size: 23 Copynumber: 3.8 Consensus size: 24
14969061 TTATTAACAT
14969071 TGTTCATGAACATGTTCAATTATA
1 TGTTCATGAACATGTTCAATTATA
*
14969095 TGTTCATGAACATGTT-AGTT-TAA
1 TGTTCATGAACATGTTCAATTAT-A
* *
14969118 TGTTCGTGAACATGTTCGATTA-A
1 TGTTCATGAACATGTTCAATTATA
*
14969141 -GTTAAATGAACATGTTCA
1 TGTT-CATGAACATGTTCA
14969159 TGAACATTAA
Statistics
Matches: 53, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
22 4 0.08
23 31 0.58
24 18 0.34
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (24 bp):
TGTTCATGAACATGTTCAATTATA
Found at i:14969168 original size:23 final size:23
Alignment explanation
Indices: 14969124--14969169 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
14969114 TTAATGTTCG
* *
14969124 TGAACATGTTCGATTAAGTTAAA
1 TGAACATGTTCGATGAAATTAAA
14969147 TGAACATGTTC-ATGAACATTAAA
1 TGAACATGTTCGATGAA-ATTAAA
14969170 CAAACGAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (23 bp):
TGAACATGTTCGATGAAATTAAA
Found at i:14970978 original size:13 final size:13
Alignment explanation
Indices: 14970960--14970984 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14970950 TTTTAAAAAG
14970960 CAACATGTAAATA
1 CAACATGTAAATA
14970973 CAACATGTAAAT
1 CAACATGTAAAT
14970985 GCAATTTCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.16, G:0.08, T:0.24
Consensus pattern (13 bp):
CAACATGTAAATA
Found at i:14972117 original size:54 final size:54
Alignment explanation
Indices: 14972035--14972143 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
14972025 CTAATTCTAC
14972035 AGACACAAGGTGGAAATGGTTCAAGGTGTTGGAGTAGGTATATATATTATTTAG
1 AGACACAAGGTGGAAATGGTTCAAGGTGTTGGAGTAGGTATATATATTATTTAG
14972089 AGACACAAGGTGGAAATGGTTCAAGGTGTTGGAGTAGGTATATATATTATTTAG
1 AGACACAAGGTGGAAATGGTTCAAGGTGTTGGAGTAGGTATATATATTATTTAG
14972143 A
1 A
14972144 AATAACTCAC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (54 bp):
AGACACAAGGTGGAAATGGTTCAAGGTGTTGGAGTAGGTATATATATTATTTAG
Found at i:14973027 original size:22 final size:22
Alignment explanation
Indices: 14972985--14973027 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
14972975 TTTATGTTCC
*
14972985 TTTATTTATCTTTGATTTTGTG
1 TTTATTTATCTTTGATATTGTG
*
14973007 TTTATCTTATTTTTG-TATTGT
1 TTTAT-TTATCTTTGATATTGT
14973028 ACTAAACTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.14, C:0.05, G:0.12, T:0.70
Consensus pattern (22 bp):
TTTATTTATCTTTGATATTGTG
Found at i:14974097 original size:26 final size:26
Alignment explanation
Indices: 14974061--14974114 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
14974051 TTCTATATGT
14974061 AATTGCAGGATGATATAATGACATGG
1 AATTGCAGGATGATATAATGACATGG
14974087 AATTGCAGGATGATATAATGACATGG
1 AATTGCAGGATGATATAATGACATGG
14974113 AA
1 AA
14974115 GTATGTCATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.41, C:0.07, G:0.26, T:0.26
Consensus pattern (26 bp):
AATTGCAGGATGATATAATGACATGG
Found at i:14974618 original size:10 final size:10
Alignment explanation
Indices: 14974596--14974627 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
14974586 TAAAAATAAA
14974596 ATATTTTAA-
1 ATATTTTAAT
14974605 ATATTTTAAT
1 ATATTTTAAT
14974615 ATATTTTAAT
1 ATATTTTAAT
14974625 ATA
1 ATA
14974628 AAATATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 9 0.41
10 13 0.59
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
ATATTTTAAT
Found at i:14974626 original size:8 final size:9
Alignment explanation
Indices: 14974594--14974648 Score: 53
Period size: 9 Copynumber: 6.1 Consensus size: 9
14974584 TATAAAAATA
14974594 AAATATTTT
1 AAATATTTT
14974603 AAATATTTT
1 AAATATTTT
14974612 AATATATTTT
1 AA-ATATTTT
*
14974622 -AATA--TA
1 AAATATTTT
14974628 AAATATTATTT
1 AAATA-T-TTT
14974639 AAATATTTT
1 AAATATTTT
14974648 A
1 A
14974649 TATTAAATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
6 1 0.03
7 4 0.11
8 3 0.08
9 16 0.42
10 8 0.21
11 6 0.16
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (9 bp):
AAATATTTT
Found at i:14974646 original size:36 final size:36
Alignment explanation
Indices: 14974548--14974648 Score: 109
Period size: 36 Copynumber: 2.9 Consensus size: 36
14974538 AAAAAAATTC
** *
14974548 TTTTAATATAAAATATTATTTCCACATTTTAGAAAA
1 TTTTAATATAAAATATTATTTAAATATTTTAGAAAA
* * * *
14974584 TATAAAAATAAAATA-T-TTTAAATATTTTA-ATATA
1 TTTTAATATAAAATATTATTTAAATATTTTAGA-AAA
14974618 TTTTAATATAAAATATTATTTAAATATTTTA
1 TTTTAATATAAAATATTATTTAAATATTTTA
14974649 TATTAAATTA
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
33 1 0.02
34 24 0.46
35 2 0.04
36 25 0.48
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.48
Consensus pattern (36 bp):
TTTTAATATAAAATATTATTTAAATATTTTAGAAAA
Found at i:14974655 original size:26 final size:27
Alignment explanation
Indices: 14974609--14974663 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
14974599 TTTTAAATAT
14974609 TTTAATATATTTTAATATAAAATATTA
1 TTTAATATATTTTAATATAAAATATTA
*
14974636 TTTAA-ATATTTT-ATATTAAATTATTA
1 TTTAATATATTTTAATA-TAAAATATTA
14974662 TT
1 TT
14974664 CTTTTGATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 3 0.12
26 18 0.69
27 5 0.19
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (27 bp):
TTTAATATATTTTAATATAAAATATTA
Found at i:14975191 original size:18 final size:18
Alignment explanation
Indices: 14975168--14975209 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
14975158 TAAATTCTAT
14975168 TGAGTGATTTGTGAGATA
1 TGAGTGATTTGTGAGATA
14975186 TGAGTGATTTGTGAGATA
1 TGAGTGATTTGTGAGATA
14975204 TGAGTG
1 TGAGTG
14975210 TTTCGAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.36, T:0.38
Consensus pattern (18 bp):
TGAGTGATTTGTGAGATA
Found at i:14976464 original size:11 final size:12
Alignment explanation
Indices: 14976437--14976477 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
14976427 GATTAAAATT
* *
14976437 GAAATTAAAGAA
1 GAAATTGAATAA
14976449 GAAATTGAAT-A
1 GAAATTGAATAA
14976460 GAAATTGAATAA
1 GAAATTGAATAA
14976472 GAAATT
1 GAAATT
14976478 TAAATATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
11 11 0.42
12 15 0.58
ACGTcount: A:0.59, C:0.00, G:0.17, T:0.24
Consensus pattern (12 bp):
GAAATTGAATAA
Found at i:14983123 original size:19 final size:21
Alignment explanation
Indices: 14983099--14983143 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
14983089 CGTGACAGTA
14983099 CATGT-CCT-GACCACACGGG
1 CATGTCCCTAGACCACACGGG
14983118 CATGTCCCTAGACCACACGGG
1 CATGTCCCTAGACCACACGGG
14983139 CATGT
1 CATGT
14983144 GAGCCCTGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 5 0.21
20 3 0.12
21 16 0.67
ACGTcount: A:0.22, C:0.36, G:0.24, T:0.18
Consensus pattern (21 bp):
CATGTCCCTAGACCACACGGG
Found at i:14991311 original size:50 final size:50
Alignment explanation
Indices: 14991257--14991443 Score: 179
Period size: 50 Copynumber: 3.8 Consensus size: 50
14991247 GTATGTGGAG
*
14991257 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTCCATCTGT
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCGTCCATCTGT
* * * *
14991307 GCTGATGCCATGTCCCAGACATGGTCTTACACTGACACATC-T-CA--T-A
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTGGCTC-TCGTCCATCTGT
* * * * *
14991353 GCCGATGCCATGTCCCAAACATTGTCTTACATTGGCTCTCATCTATCTGT
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCGTCCATCTGT
* * * * *
14991403 -ATCGATGTCATATCTCAAACATGGTCTTACACTAGCTCTCG
1 GCT-GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCG
14991444 AATAACTCCA
Statistics
Matches: 110, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
45 2 0.02
46 33 0.30
47 2 0.02
49 3 0.03
50 68 0.62
51 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.30
Consensus pattern (50 bp):
GCTGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCGTCCATCTGT
Found at i:14991401 original size:96 final size:96
Alignment explanation
Indices: 14991260--14991435 Score: 246
Period size: 96 Copynumber: 1.8 Consensus size: 96
14991250 TGTGGAGGCT
* * * *
14991260 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTCCATCTGT-GCTGATGCCATGTCCCA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCCATCTGTATC-GATGCCATATCCCA
*
14991324 GACATGGTCTTACACTGACACATCTCATAGCC
65 AACATGGTCTTACACTGACACATCTCATAGCC
* * * * *
14991356 GATGCCATGTCCCAAACATTGTCTTACATTGGCTCTCATCTATCTGTATCGATGTCATATCTCAA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCCATCTGTATCGATGCCATATCCCAA
14991421 ACATGGTCTTACACT
66 ACATGGTCTTACACT
14991436 AGCTCTCGAA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
96 68 0.99
97 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.31
Consensus pattern (96 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCCATCTGTATCGATGCCATATCCCAA
ACATGGTCTTACACTGACACATCTCATAGCC
Found at i:14991831 original size:29 final size:29
Alignment explanation
Indices: 14991769--14991831 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
14991759 TCACATTTTT
**
14991769 GACAAAATGACCATTTTTCCCTAGACTTTC
1 GACAAAATGACCATTTACCCCTAGAC-TTC
*
14991799 -ACAAAATGACCATTTCACCCCTAGGC-TC
1 GACAAAATGACCATTT-ACCCCTAGACTTC
14991827 GACAA
1 GACAA
14991832 TCGATTTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
28 2 0.07
29 19 0.68
30 7 0.25
ACGTcount: A:0.33, C:0.30, G:0.11, T:0.25
Consensus pattern (29 bp):
GACAAAATGACCATTTACCCCTAGACTTC
Found at i:14996941 original size:39 final size:39
Alignment explanation
Indices: 14996912--14997171 Score: 299
Period size: 40 Copynumber: 6.5 Consensus size: 39
14996902 GCTACTCGTT
*
14996912 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
14996951 CAAATACCTTCGGGACTTAACCCGGATTTAGTAACTTGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
*
14996991 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
* **
14997031 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCATA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * *
14997071 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
14997110 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
14997151 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTC-GGACTTAGCC
14997172 GGACATCATT
Statistics
Matches: 190, Mismatches: 25, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
39 46 0.24
40 131 0.69
41 13 0.07
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:14997032 original size:80 final size:80
Alignment explanation
Indices: 14996912--14997171 Score: 341
Period size: 80 Copynumber: 3.3 Consensus size: 80
14996902 GCTACTCGTT
* * **
14996912 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCACAAATACCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
14996974 GGATTTAGTAACTTGCA
64 GGATTTAGTAACTTGCA
*
14996991 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
***
14997056 ATTTAGTAACTCATA
66 ATTTAGTAACTTGCA
* *
14997071 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
* * *
14997135 ATATGGTCACTTAGCA
66 ATTTAGTAACTT-GCA
14997151 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
14997172 GGACATCATT
Statistics
Matches: 159, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
79 78 0.49
80 79 0.50
81 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
ATTTAGTAACTTGCA
Found at i:14997123 original size:79 final size:80
Alignment explanation
Indices: 14996912--14997171 Score: 341
Period size: 79 Copynumber: 3.3 Consensus size: 80
14996902 GCTACTCGTT
* * **
14996912 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCACAAATACCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
*
14996974 GGATTTAGTAACTTGCA
64 GGATTTAGTAACTTACA
*
14996991 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
* *
14997056 ATTTAGTAACTCATA
66 ATTTAGTAACTTACA
* *
14997071 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
* * *
14997135 ATATGGTCACTTAGCA
66 ATTTAGTAACTTA-CA
14997151 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
14997172 GGACATCATT
Statistics
Matches: 160, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
79 79 0.49
80 79 0.49
81 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
ATTTAGTAACTTACA
Found at i:15004968 original size:40 final size:40
Alignment explanation
Indices: 15004931--15005063 Score: 232
Period size: 40 Copynumber: 3.3 Consensus size: 40
15004921 GCTACTCGTT
* *
15004931 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
15004971 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
15005011 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
15005051 CAAATGCCTTCGG
1 CAAATGCCTTCGG
15005064 ATCTTAGTAT
Statistics
Matches: 90, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
40 88 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:15010289 original size:50 final size:50
Alignment explanation
Indices: 15010185--15010555 Score: 266
Period size: 50 Copynumber: 7.5 Consensus size: 50
15010175 TGAAGTCGAT
* *
15010185 GCCATGTCCCAGACATGGTCTTACACT-AGC--TCATGTATCAAAG-TCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTATCATGTATCAAGGCT-GAA
* * * *
15010233 GTCATGTCACAAAAATGGTCTTACACTGACTATCATGTATCAAGGCTGAA
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCATGTATCAAGGCTGAA
* * * * * * * *
15010283 GCCATGTCACAGACATGGTCTTACACTAGA-TCTCGTATGTCGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACT-GACTATCATGTATCAAGGCTGAA
* * *
15010333 GCCATGTCCCAAACATGGTCTTACACTGAC-A-CA--TCTCATA-GCTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCATGTATCA-AGGCTGAA
* * * * ** *
15010379 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGATAC-CAA
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCATGTATCAAGGCTGAA
* * * * * *
15010428 TGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATCTATC--GGTTCCAA
1 -GCCATGTCCCAGACATGGTCTTACACTGACTATCATGTATCAAGGCT-GAA
* * * *
15010478 TGCCATGTCCCAAACATGGTCTTACACTGACTATCATGTACCGAGGCCGACA
1 -GCCATGTCCCAGACATGGTCTTACACTGACTATCATGTATCAAGGCTGA-A
15010530 -CCATGTCCCAGACATGGTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
15010556 AGCTCTCGAA
Statistics
Matches: 260, Mismatches: 45, Indels: 34
0.77 0.13 0.10
Matches are distributed among these distances:
46 36 0.14
47 1 0.00
48 27 0.10
49 5 0.02
50 184 0.71
51 4 0.02
52 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTATCATGTATCAAGGCTGAA
Found at i:15010447 original size:146 final size:146
Alignment explanation
Indices: 15010181--15010562 Score: 367
Period size: 146 Copynumber: 2.6 Consensus size: 146
15010171 GGTATGAAGT
* * * *
15010181 CGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCATGTATCAAAG-TCGATGTCATGTCACA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGA-CACA--TATCAAAGCT-GATGCCATGTCCCA
* * * * * * *
15010244 AAAATGGTCTTACACTGACTATCATGTATCAAGGCTGAAGCCATGTCACAGACATGGTCTTACAC
62 GACATGGTCTTACACTGGCTCTCATCTATCAAGACTCAAGCCATGTCACAGACATGGTCTTACAC
* *
15010309 TAGATCTCGTATGTCGAG-GC
127 TAGATCTCATATATCG-GTGC
* *
15010329 CGATGCCATGTCCCAAACATGGTCTTACACTGACACATCTCATAGCTGATGCCATGTCCCAGACA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACACATATCAAAGCTGATGCCATGTCCCAGACA
* * * * *
15010394 TGGTCTTACACTGGCTCTCATCTATCGATAC-CAATGCCATGTCCCAGACATGGTCTTACATTGG
66 TGGTCTTACACTGGCTCTCATCTATCAAGACTCAA-GCCATGTCACAGACATGGTCTTACACTAG
* * *
15010458 CTCTCATCTATCGGTTC
130 ATCTCATATATCGGTGC
* * * * * **
15010475 CAATGCCATGTCCCAAACATGGTCTTACACTGACTATCATGTACCGAGGCCGACACCATGTCCCA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGAC-A-CA--TATCAAAGCTGATGCCATGTCCCA
*
15010540 GACATGGTCTTACACTAGCTCTC
62 GACATGGTCTTACACTGGCTCTC
15010563 GAATAACCCA
Statistics
Matches: 193, Mismatches: 33, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
145 3 0.02
146 114 0.59
147 2 0.01
148 35 0.18
149 1 0.01
150 38 0.20
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (146 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGACACATATCAAAGCTGATGCCATGTCCCAGACA
TGGTCTTACACTGGCTCTCATCTATCAAGACTCAAGCCATGTCACAGACATGGTCTTACACTAGA
TCTCATATATCGGTGC
Found at i:15012371 original size:2 final size:2
Alignment explanation
Indices: 15012366--15012408 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
15012356 TCCTATTTTT
15012366 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
15012408 T
1 T
15012409 ATTTTGACGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:15013091 original size:23 final size:23
Alignment explanation
Indices: 15013065--15013119 Score: 110
Period size: 23 Copynumber: 2.4 Consensus size: 23
15013055 ATTTATGACC
15013065 TGTCTCGAGTCATGGAGACCCTT
1 TGTCTCGAGTCATGGAGACCCTT
15013088 TGTCTCGAGTCATGGAGACCCTT
1 TGTCTCGAGTCATGGAGACCCTT
15013111 TGTCTCGAG
1 TGTCTCGAG
15013120 ATATAAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.16, C:0.25, G:0.27, T:0.31
Consensus pattern (23 bp):
TGTCTCGAGTCATGGAGACCCTT
Found at i:15021890 original size:29 final size:32
Alignment explanation
Indices: 15021850--15021916 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 32
15021840 ATGTTTGTTT
*
15021850 TTTAATTTTAT-ATA-CTCATATATA-TTAAA
1 TTTATTTTTATAATATCTCATATATATTTAAA
**
15021879 TTTATTTTTATAATATCTTTTATATATTTAAA
1 TTTATTTTTATAATATCTCATATATATTTAAA
15021911 -TTATTT
1 TTTATTT
15021917 GTTGATGTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 10 0.31
30 3 0.09
31 14 0.44
32 5 0.16
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (32 bp):
TTTATTTTTATAATATCTCATATATATTTAAA
Found at i:15022286 original size:24 final size:22
Alignment explanation
Indices: 15022245--15022291 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
15022235 AGATAAAATA
*
15022245 TAAATTTTTTTATAAAATTTAT
1 TAAATTTTTTTATAAAATATAT
*
15022267 TAAATTTTTATTTATGAAATATAT
1 TAAA-TTTT-TTTATAAAATATAT
15022291 T
1 T
15022292 TATTATAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 4 0.19
23 4 0.19
24 13 0.62
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TAAATTTTTTTATAAAATATAT
Found at i:15028161 original size:14 final size:14
Alignment explanation
Indices: 15028143--15028176 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
15028133 AAAAATCTAA
15028143 AAAAATGAA-TATT
1 AAAAATGAATTATT
15028156 ATAAAATGAATTATT
1 A-AAAATGAATTATT
15028171 AAAAAT
1 AAAAAT
15028177 AGTAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.05
14 13 0.68
15 5 0.26
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (14 bp):
AAAAATGAATTATT
Found at i:15028203 original size:20 final size:22
Alignment explanation
Indices: 15028157--15028203 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 22
15028147 ATGAATATTA
15028157 TAAAATGAATTATTAAAAATAG
1 TAAAATGAATTATTAAAAATAG
*
15028179 T-AAAT-AATTA-TAAAAATAT
1 TAAAATGAATTATTAAAAATAG
15028198 TAAAAT
1 TAAAAT
15028204 TTATAATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 9 0.39
21 4 0.17
22 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (22 bp):
TAAAATGAATTATTAAAAATAG
Done.