Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 50 of 325
Found at i:15028926 original size:18 final size:17
Alignment explanation
Indices: 15028885--15028929 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
15028875 TGTAAAAACA
*
15028885 TTAATCTTTATAACTTT
1 TTAATTTTTATAACTTT
*
15028902 TAGAATTTTTATAAACTTT
1 T-TAATTTTTAT-AACTTT
15028921 TTAATTTTT
1 TTAATTTTT
15028930 TTATTTAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 1 0.04
18 15 0.65
19 7 0.30
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (17 bp):
TTAATTTTTATAACTTT
Found at i:15031251 original size:14 final size:13
Alignment explanation
Indices: 15031232--15031269 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
15031222 TTAAATTGAT
15031232 TAAAATATTTATAA
1 TAAAATATTTAT-A
15031246 TAAAATATTT-TA
1 TAAAATATTTATA
*
15031258 TTAAATATTTAT
1 TAAAATATTTAT
15031270 TATTTTACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 10 0.45
13 2 0.09
14 10 0.45
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TAAAATATTTATA
Found at i:15031564 original size:21 final size:21
Alignment explanation
Indices: 15031538--15031591 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
15031528 CACCATTGTT
*
15031538 TCTAATCTCACTGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
*
15031559 TCTAATTTCACCGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
*
15031580 ACTAATCTCACC
1 TCTAATCTCACC
15031592 ACCACCGGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.31, G:0.07, T:0.31
Consensus pattern (21 bp):
TCTAATCTCACCGCTACAGTA
Found at i:15032234 original size:19 final size:19
Alignment explanation
Indices: 15032186--15032228 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
15032176 ATTATTTGTA
15032186 AAATTTAATTTGAATATAT
1 AAATTTAATTTGAATATAT
15032205 AAATTTAATTTGAATATAT
1 AAATTTAATTTGAATATAT
15032224 AAATT
1 AAATT
15032229 ATATTTTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (19 bp):
AAATTTAATTTGAATATAT
Found at i:15032245 original size:19 final size:20
Alignment explanation
Indices: 15032186--15032251 Score: 75
Period size: 19 Copynumber: 3.5 Consensus size: 20
15032176 ATTATTTGTA
*
15032186 AAATT-TAATTTGAATATAT
1 AAATTATAATTTCAATATAT
*
15032205 AAATT-TAATTTGAATATAT
1 AAATTATAATTTCAATATAT
*
15032224 AAATTATATTTTCAATAT-T
1 AAATTATAATTTCAATATAT
*
15032243 AAAATATAA
1 AAATTATAA
15032252 CAAATACAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 32 0.76
20 10 0.24
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (20 bp):
AAATTATAATTTCAATATAT
Found at i:15042132 original size:59 final size:59
Alignment explanation
Indices: 15041975--15042136 Score: 209
Period size: 59 Copynumber: 2.7 Consensus size: 59
15041965 TTTATTTTTT
* * **
15041975 AATATATTTGTACAAATTGTTTTTATATTGTTTCATTTAATAAAATAGAAATTCTTTTG
1 AATATATTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAAAAGAAATTCTTTAA
* * * *
15042034 AATATTTTTGTACAAATTATTTTTATACTATTTCATTTAATAAAAAAGAAGTTCTTTAA
1 AATATATTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAAAAGAAATTCTTTAA
* * *
15042093 AATATGTTTGTGCAAATTATTTTT-TCATTGTTTCGTTTAATAAA
1 AATATATTTGTACAAATTATTTTTAT-ATTGTTTCATTTAATAAA
15042137 TTAGGAGTTA
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
58 1 0.01
59 88 0.99
ACGTcount: A:0.36, C:0.06, G:0.08, T:0.50
Consensus pattern (59 bp):
AATATATTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAAAAGAAATTCTTTAA
Found at i:15045423 original size:156 final size:155
Alignment explanation
Indices: 15045179--15045472 Score: 385
Period size: 156 Copynumber: 1.9 Consensus size: 155
15045169 TATTTTGCTA
* * * *** *
15045179 ACAGCGCATCCTACTTGAAGAGTTTTTCAACCCTAACTATCAGATTTCCCGTGAATCCTGAGATA
1 ACAGCGCATCCTACTTGAACAGTTTTTCAACCCCAACTATAAGATTTCCCAAAAATCCCGAGATA
* * * *
15045244 TTTTTTCAAAACCATCTTCTCAAAATTATTTTTTTAGAACCAATAGTACAAAAAAAGTGT-TCAG
66 TTTTTTCAAAACCATCTTCTCAAAATTA-TTTTTCAAAACCAACAGTACAAAAAAAGCGTCT-AG
15045308 CTGGAAGCTTGTTTAGTACTTTTACTG
129 CTGGAAGCTTGTTTAGTACTTTTACTG
* * *
15045335 ACAGTGCATCCTACTTGAACTGTTTTTCAACCCCAACTATAAGATTTCCCAAAAATCCCGGGATA
1 ACAGCGCATCCTACTTGAACAGTTTTTCAACCCCAACTATAAGATTTCCCAAAAATCCCGAGATA
* * * *
15045400 GTTTTTT-AGAACTATCTTTTCAAAATTATTTTTCAAAATCAACAGTACAAAAAAAGCGTCTAGC
66 -TTTTTTCAAAACCATCTTCTCAAAATTATTTTTCAAAACCAACAGTACAAAAAAAGCGTCTAGC
15045464 TGGAAGCTT
130 TGGAAGCTT
15045473 TTTCTATACA
Statistics
Matches: 118, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
155 38 0.32
156 74 0.63
157 6 0.05
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (155 bp):
ACAGCGCATCCTACTTGAACAGTTTTTCAACCCCAACTATAAGATTTCCCAAAAATCCCGAGATA
TTTTTTCAAAACCATCTTCTCAAAATTATTTTTCAAAACCAACAGTACAAAAAAAGCGTCTAGCT
GGAAGCTTGTTTAGTACTTTTACTG
Found at i:15045686 original size:28 final size:29
Alignment explanation
Indices: 15045646--15045724 Score: 126
Period size: 28 Copynumber: 2.8 Consensus size: 29
15045636 CCCTAGACTC
*
15045646 TAAACCTTAATTTATTTATTTTTAAAA-A
1 TAAACCCTAATTTATTTATTTTTAAAACA
15045674 TAAACCCTAATTTATTTATTTTTAAAACCA
1 TAAACCCTAATTTATTTATTTTTAAAA-CA
15045704 TAAACCCTAATTTATTT-TTTT
1 TAAACCCTAATTTATTTATTTT
15045725 CCAAAACCTT
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
28 26 0.54
29 4 0.08
30 18 0.38
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (29 bp):
TAAACCCTAATTTATTTATTTTTAAAACA
Found at i:15045709 original size:30 final size:30
Alignment explanation
Indices: 15045646--15045744 Score: 132
Period size: 30 Copynumber: 3.4 Consensus size: 30
15045636 CCCTAGACTC
*
15045646 TAAACCTTAATTTATTTATTTTTAAAA--A
1 TAAACCCTAATTTATTTATTTTTAAAACCA
15045674 TAAACCCTAATTTATTTATTTTTAAAACCA
1 TAAACCCTAATTTATTTATTTTTAAAACCA
* *
15045704 TAAACCCTAATTTATTT-TTTTCCAAAACCT
1 TAAACCCTAATTTATTTATTTT-TAAAACCA
*
15045734 TAAGCCCTAAT
1 TAAACCCTAAT
15045745 ATGCAAATAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
28 26 0.41
29 4 0.06
30 34 0.53
ACGTcount: A:0.38, C:0.17, G:0.01, T:0.43
Consensus pattern (30 bp):
TAAACCCTAATTTATTTATTTTTAAAACCA
Found at i:15055985 original size:23 final size:23
Alignment explanation
Indices: 15055959--15056002 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
15055949 ATTAGAATTG
15055959 ATTATATAAATTA-TTTAATTAGA
1 ATTAT-TAAATTATTTTAATTAGA
*
15055982 ATTATTTAATTATTTTAATTA
1 ATTATTAAATTATTTTAATTA
15056003 ATAATTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (23 bp):
ATTATTAAATTATTTTAATTAGA
Found at i:15055986 original size:14 final size:14
Alignment explanation
Indices: 15055967--15055993 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15055957 TGATTATATA
15055967 AATTATTTAATTAG
1 AATTATTTAATTAG
15055981 AATTATTTAATTA
1 AATTATTTAATTA
15055994 TTTTAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (14 bp):
AATTATTTAATTAG
Found at i:15062029 original size:50 final size:51
Alignment explanation
Indices: 15061952--15062073 Score: 194
Period size: 50 Copynumber: 2.4 Consensus size: 51
15061942 GACCATGGTA
15061952 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAA-TG
*
15062003 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
* *
15062053 ACAAGTGAAAAGTGGTAGCTT
1 ACAAGTGATAAGTGATAGCTT
15062074 TAGCTACCTG
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
50 45 0.68
51 21 0.32
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
Found at i:15062094 original size:31 final size:31
Alignment explanation
Indices: 15062056--15062235 Score: 263
Period size: 31 Copynumber: 5.8 Consensus size: 31
15062046 ACAAATGACA
**
15062056 AGTGAAAAGTGGTAGCTTTAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
15062087 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
15062118 AGTGAAAATTGGTAG-TTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
* *
15062149 AGTGAAAAGTGGTAACTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
15062180 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
15062211 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
15062236 AAGTGACAAG
Statistics
Matches: 135, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 2 0.01
31 132 0.98
32 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:15062330 original size:47 final size:46
Alignment explanation
Indices: 15062260--15062424 Score: 169
Period size: 47 Copynumber: 3.7 Consensus size: 46
15062250 AAGTGATTTT
* *
15062260 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
15062306 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
15062353 CGTGTAAGACCATAGCTGGGCTATGGCATC-----GATATATGAATA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATG-ATA
* * * *
15062395 TGTGTAAGACCATAGCTGGGCTATGGCATC
1 CGTATAAGACCATATCTGGGATATGGCATC
15062425 ATTATGTGAA
Statistics
Matches: 106, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
41 7 0.07
42 31 0.29
46 27 0.25
47 41 0.39
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:15062412 original size:42 final size:43
Alignment explanation
Indices: 15062354--15062468 Score: 171
Period size: 42 Copynumber: 2.7 Consensus size: 43
15062344 TATGTGATTC
*
15062354 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
15062396 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
15062438 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
15062469 GAAAACGAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 64 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:15072887 original size:55 final size:55
Alignment explanation
Indices: 15072773--15072891 Score: 170
Period size: 55 Copynumber: 2.2 Consensus size: 55
15072763 CGTTTGGTAG
* *
15072773 ACCCGTGGTTGAAACTGAGAAACTAGCACGGGCATGAGACACACCTGTGTGGTAG
1 ACCCGTGGTTGAAACTGAGAAACTAGCACGGGCATGAGACACACCTGTGTGCTAC
* *
15072828 ACCCGTGGTTGAAACTGAGAAACTAGCACGGGCGTGAGACAC-GCTCGTGT-CTACC
1 ACCCGTGGTTGAAACTGAGAAACTAGCACGGGCATGAGACACACCT-GTGTGCTA-C
15072883 ACCCGTGGT
1 ACCCGTGGT
15072892 CGAACCTATT
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
54 4 0.07
55 54 0.93
ACGTcount: A:0.26, C:0.25, G:0.30, T:0.18
Consensus pattern (55 bp):
ACCCGTGGTTGAAACTGAGAAACTAGCACGGGCATGAGACACACCTGTGTGCTAC
Found at i:15074232 original size:27 final size:26
Alignment explanation
Indices: 15074184--15074236 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
15074174 GCGAGGCTGC
*
15074184 CAGATATTGTGACGAAGTCACCAGAT
1 CAGATATTGTGACGAAGCCACCAGAT
* *
15074210 CAGATATATGTGGCGAGGCCACCAGAT
1 CAGATAT-TGTGACGAAGCCACCAGAT
15074237 TGCAGCGAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAT
Found at i:15095437 original size:15 final size:16
Alignment explanation
Indices: 15095417--15095461 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
15095407 AATTGGTTGA
15095417 GAAAATT-ATTTAATT
1 GAAAATTAATTTAATT
*
15095432 GAAAATTTAATTTAGTT
1 GAAAA-TTAATTTAATT
15095449 -AAAATTAATTTAA
1 GAAAATTAATTTAA
15095462 AACAAAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 13 0.50
16 6 0.23
17 7 0.27
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (16 bp):
GAAAATTAATTTAATT
Found at i:15097717 original size:40 final size:40
Alignment explanation
Indices: 15097621--15097764 Score: 177
Period size: 40 Copynumber: 3.5 Consensus size: 40
15097611 TATTCGGATG
15097621 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTGCT
* **
15097664 ATACCCGGGCTAAGTCCCGAAGGCATTCATGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
*
15097704 ATATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTGCT
*
15097744 ATATCC-GGCTAATTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
15097765 ATACTTGGGT
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
39 16 0.18
40 42 0.47
41 2 0.02
43 29 0.33
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
Found at i:15100669 original size:24 final size:22
Alignment explanation
Indices: 15100620--15100671 Score: 59
Period size: 24 Copynumber: 2.3 Consensus size: 22
15100610 AATGCTAAAT
* *
15100620 ATATATAAAATAAATACATAAT
1 ATATATAAAATAAATACACAAC
*
15100642 ATATATAAAATGAACATATACAAC
1 ATATATAAAAT-AA-ATACACAAC
15100666 ATATAT
1 ATATAT
15100672 TGGAAATACT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 11 0.44
23 2 0.08
24 12 0.48
ACGTcount: A:0.60, C:0.08, G:0.02, T:0.31
Consensus pattern (22 bp):
ATATATAAAATAAATACACAAC
Found at i:15100849 original size:21 final size:21
Alignment explanation
Indices: 15100820--15100860 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
15100810 TAACACTGCA
15100820 TAAACATATACATATATATAT
1 TAAACATATACATATATATAT
* *
15100841 TAAAGATATATATATATATA
1 TAAACATATACATATATATA
15100861 ATAATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (21 bp):
TAAACATATACATATATATAT
Found at i:15100869 original size:16 final size:16
Alignment explanation
Indices: 15100848--15100895 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
15100838 TATTAAAGAT
15100848 ATATATATATATAATA
1 ATATATATATATAATA
15100864 ATATATACTA-ATAATA
1 ATATATA-TATATAATA
15100880 AT-TAT-TATTATAATA
1 ATATATATA-TATAATA
15100895 A
1 A
15100896 AAAGATGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 2 0.07
15 10 0.34
16 15 0.52
17 2 0.07
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
ATATATATATATAATA
Found at i:15101103 original size:14 final size:15
Alignment explanation
Indices: 15101073--15101106 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
15101063 TATAATCGGG
15101073 ATAA-AATAGATATC
1 ATAATAATAGATATC
15101087 ATAATAATAGATA-C
1 ATAATAATAGATATC
15101101 ATAATA
1 ATAATA
15101107 TATAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (15 bp):
ATAATAATAGATATC
Found at i:15101266 original size:23 final size:25
Alignment explanation
Indices: 15101232--15101306 Score: 68
Period size: 23 Copynumber: 3.1 Consensus size: 25
15101222 TACAATATAG
* *
15101232 TATTAGAA-ATATACATAC-AATAG
1 TATTAAAAGATATACATACTAATAA
*
15101255 TA-TAAAAGATATATA-ACTAATAA
1 TATTAAAAGATATACATACTAATAA
* *
15101278 TATTAAAATATATACATAATAATATA
1 TATTAAAAGATATACATACTAATA-A
15101304 TAT
1 TAT
15101307 AAATATAATA
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
22 6 0.15
23 14 0.34
24 11 0.27
25 6 0.15
26 4 0.10
ACGTcount: A:0.56, C:0.05, G:0.04, T:0.35
Consensus pattern (25 bp):
TATTAAAAGATATACATACTAATAA
Found at i:15101353 original size:13 final size:11
Alignment explanation
Indices: 15101219--15101352 Score: 67
Period size: 11 Copynumber: 11.5 Consensus size: 11
15101209 GGTGTTAGAA
*
15101219 ATATACAATAT
1 ATATAAAATAT
15101230 AGTATTAGAAATAT
1 A-TA-TA-AAATAT
* *
15101244 ACATACAATA-
1 ATATAAAATAT
* *
15101254 GTATAAAAGAT
1 ATATAAAATAT
15101265 ATATAACTAATA-
1 ATATAA--AATAT
15101277 ATATTAAAATAT
1 ATA-TAAAATAT
15101289 ATACATAATAATAT
1 AT--ATAA-AATAT
15101303 ATAT-AAATAT
1 ATATAAAATAT
15101313 AATATTAAAATAT
1 -ATA-TAAAATAT
* * *
15101326 ATACATAACAT
1 ATATAAAATAT
*
15101337 ATATGAAATAT
1 ATATAAAATAT
15101348 ATATA
1 ATATA
15101353 TCATATAGTA
Statistics
Matches: 92, Mismatches: 17, Indels: 28
0.67 0.12 0.20
Matches are distributed among these distances:
10 11 0.12
11 34 0.37
12 15 0.16
13 18 0.20
14 14 0.15
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.34
Consensus pattern (11 bp):
ATATAAAATAT
Found at i:15101509 original size:22 final size:21
Alignment explanation
Indices: 15101484--15101549 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 21
15101474 TAATAATAAT
15101484 ATAAATAATGGTAAATAAAATA
1 ATAAATAATGGTAAA-AAAATA
* **
15101506 ATAAGTAATATTTAAAAAAATA
1 ATAAATAAT-GGTAAAAAAATA
15101528 A-AAA-AATGGTAAAAAAATA
1 ATAAATAATGGTAAAAAAATA
15101547 ATA
1 ATA
15101550 TAAAAACCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
19 11 0.31
20 4 0.11
21 2 0.06
22 15 0.42
23 4 0.11
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.26
Consensus pattern (21 bp):
ATAAATAATGGTAAAAAAATA
Found at i:15101515 original size:15 final size:16
Alignment explanation
Indices: 15101465--15101516 Score: 56
Period size: 15 Copynumber: 3.4 Consensus size: 16
15101455 ATATTATTAT
*
15101465 TAATATTAATAATAA-
1 TAATATAAATAATAAG
*
15101480 TAATATAAATAAT-GG
1 TAATATAAATAATAAG
15101495 TAA-ATAAAATAATAAG
1 TAATAT-AAATAATAAG
15101511 TAATAT
1 TAATAT
15101517 TTAAAAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
14 2 0.07
15 22 0.73
16 4 0.13
17 2 0.07
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.35
Consensus pattern (16 bp):
TAATATAAATAATAAG
Found at i:15101554 original size:22 final size:21
Alignment explanation
Indices: 15101478--15101555 Score: 63
Period size: 22 Copynumber: 3.6 Consensus size: 21
15101468 TATTAATAAT
15101478 AATAATATAAATAATGGTAAATAA
1 AATAATA-AAA-AATGGTAAA-AA
* *
15101502 AATAATAAGTAATAT-TTAAAAA
1 AATAATAA--AAAATGGTAAAAA
15101524 AAT-A-AAAAAATGGTAAAAA
1 AATAATAAAAAATGGTAAAAA
15101543 AATAATATAAAAA
1 AATAATA-AAAAA
15101556 CCAAATTAGA
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
18 4 0.09
19 9 0.20
20 3 0.07
21 2 0.05
22 10 0.23
23 5 0.11
24 9 0.20
25 2 0.05
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (21 bp):
AATAATAAAAAATGGTAAAAA
Found at i:15111213 original size:22 final size:22
Alignment explanation
Indices: 15111172--15111226 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
15111162 ACATGCAATG
* * *
15111172 AATGAATGAATGAATGAATGTCA
1 AATGAATG-TTGAATAAATGACA
*
15111195 AATGAATGTTGAATAAATGACG
1 AATGAATGTTGAATAAATGACA
15111217 AATGAATGTT
1 AATGAATGTT
15111227 AGTAATGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 20 0.71
23 8 0.29
ACGTcount: A:0.45, C:0.04, G:0.22, T:0.29
Consensus pattern (22 bp):
AATGAATGTTGAATAAATGACA
Found at i:15120901 original size:14 final size:14
Alignment explanation
Indices: 15120884--15120911 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15120874 TTTCCTTGTT
15120884 AACTTGAAATCATA
1 AACTTGAAATCATA
15120898 AACTTGAAATCATA
1 AACTTGAAATCATA
15120912 CTTTCACCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (14 bp):
AACTTGAAATCATA
Found at i:15124276 original size:18 final size:18
Alignment explanation
Indices: 15124255--15124310 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
15124245 AAAAAAAATT
15124255 TAAATATTTTAAAATTTA
1 TAAATATTTTAAAATTTA
* *
15124273 TAAAAATTTCAAAATTTA
1 TAAATATTTTAAAATTTA
15124291 T--AT-TTTTATAAATTTA
1 TAAATATTTTA-AAATTTA
15124307 TAAA
1 TAAA
15124311 AAAACAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
15 4 0.13
16 9 0.29
18 18 0.58
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
TAAATATTTTAAAATTTA
Found at i:15132967 original size:18 final size:18
Alignment explanation
Indices: 15132946--15132980 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15132936 ATGTTTTAGG
15132946 TTTTAGTAACTTGGTTGT
1 TTTTAGTAACTTGGTTGT
* *
15132964 TTTTATTAGCTTGGTTG
1 TTTTAGTAACTTGGTTG
15132981 CTTGGGATGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.06, G:0.23, T:0.57
Consensus pattern (18 bp):
TTTTAGTAACTTGGTTGT
Found at i:15164287 original size:25 final size:25
Alignment explanation
Indices: 15164257--15164375 Score: 93
Period size: 25 Copynumber: 4.8 Consensus size: 25
15164247 GCCCTTTCTA
*
15164257 GAGCCATATAACAGGAAGCTCATGT
1 GAGCCATATAACAGGAAGCTCATGC
* * * *
15164282 GAGCCATGTAACGGGAAGCTTATCC
1 GAGCCATATAACAGGAAGCTCATGC
* * **
15164307 GAGCTATATAA-TGGAAAGCTCATAA
1 GAGCCATATAACAGG-AAGCTCATGC
*
15164332 GAGCCATA-ATC-GAGAAGCTCATGC
1 GAGCCATATAACAG-GAAGCTCATGC
*
15164356 GAGCCA-ATAACAGGTAGCTC
1 GAGCCATATAACAGGAAGCTC
15164376 CGAAGAGCCA
Statistics
Matches: 72, Mismatches: 17, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
23 1 0.01
24 26 0.36
25 45 0.62
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTCATGC
Found at i:15164480 original size:26 final size:26
Alignment explanation
Indices: 15164451--15164511 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
15164441 GGAAGTTCTG
15164451 AAGAGCCATTAATCAAGAAGCTCACA
1 AAGAGCCATTAATCAAGAAGCTCACA
* * *** *
15164477 AAGATCCTTTAATTGGGAAGCTCACG
1 AAGAGCCATTAATCAAGAAGCTCACA
15164503 AAGAGCCAT
1 AAGAGCCAT
15164512 ATATCAGGAC
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.20
Consensus pattern (26 bp):
AAGAGCCATTAATCAAGAAGCTCACA
Found at i:15165205 original size:19 final size:19
Alignment explanation
Indices: 15165181--15165231 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
15165171 TTTTGCATCT
15165181 TTACAATTT-AGTCCCTAAA
1 TTACAATTTCA-TCCCTAAA
15165200 TTACAATTTCATCCCTAAA
1 TTACAATTTCATCCCTAAA
15165219 TTACAATTTCATC
1 TTACAATTTCATC
15165232 AAAATTCACT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 30 0.97
20 1 0.03
ACGTcount: A:0.35, C:0.24, G:0.02, T:0.39
Consensus pattern (19 bp):
TTACAATTTCATCCCTAAA
Found at i:15167324 original size:25 final size:24
Alignment explanation
Indices: 15167287--15167333 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
15167277 AAAAAGCTTC
15167287 TGAAAAAAACTC-AAGAGCAATTCT
1 TGAAAAAAACTCAAAGAG-AATTCT
*
15167311 TGAAGAAAATCTCAAAGAGAATT
1 TGAA-AAAAACTCAAAGAGAATT
15167334 ATTATTAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 4 0.20
25 11 0.55
26 5 0.25
ACGTcount: A:0.51, C:0.13, G:0.15, T:0.21
Consensus pattern (24 bp):
TGAAAAAAACTCAAAGAGAATTCT
Found at i:15168243 original size:5 final size:5
Alignment explanation
Indices: 15168235--15168266 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
15168225 AAATCAATGG
15168235 TAAAA TAAAA TAAAA TAAAA TAAAA GTAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA -TAAAA T
15168267 CCATATAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:15174235 original size:29 final size:30
Alignment explanation
Indices: 15174181--15174237 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
15174171 TCTTTTTTAA
15174181 GGTTTATTCTTGTAAAATTTTAAAAAATTT
1 GGTTTATTCTTGTAAAATTTTAAAAAATTT
*
15174211 GGTTTATT-TT-TATAATATTTAAAAAAT
1 GGTTTATTCTTGTAAAAT-TTTAAAAAAT
15174238 GACATTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 5 0.20
29 12 0.48
30 8 0.32
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.51
Consensus pattern (30 bp):
GGTTTATTCTTGTAAAATTTTAAAAAATTT
Found at i:15174854 original size:23 final size:23
Alignment explanation
Indices: 15174820--15174863 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
15174810 CTATTTTTTT
15174820 AATATTAATTTT-TTTGTTTAAAA
1 AATATTAATTTTATTT-TTTAAAA
*
15174843 AATATTATTTTTATTTTTTAA
1 AATATTAATTTTATTTTTTAA
15174864 TATTTATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (23 bp):
AATATTAATTTTATTTTTTAAAA
Found at i:15175141 original size:3 final size:3
Alignment explanation
Indices: 15175127--15175197 Score: 124
Period size: 3 Copynumber: 23.3 Consensus size: 3
15175117 GAGAGAAAGG
*
15175127 AGA AGG AGA AGA AGA AGGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA A-GA AGA AGA AGA AGA AGA AGA AGA AGA AGA
15175173 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
15175198 AGGTAATGTA
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
3 62 0.95
4 3 0.05
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:15175624 original size:217 final size:217
Alignment explanation
Indices: 15175363--15175947 Score: 838
Period size: 217 Copynumber: 2.7 Consensus size: 217
15175353 ATTTGGTTAA
* **
15175363 TAATTTATGAGATTAGGTTAC--AAATTGTTAGTGTTTAGTGGTTTAGGGTATTGCGATTTTTTA
1 TAATTTAT--GATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTATGATTTTTTA
***
15175426 GTAATGTAATTTTTTTTAAAAATAATTTTATAGTTATTTTGTTAGTAATTTATGATTAAGTTATA
64 GTAATGT-ATTTTTAAAAAAAATAATTTTATAGTTATTTTGTTAGTAATTTATGATTAAGTTAT-
15175491 AAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTAGTAATATATTT-A
127 AAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGA-TTTTTTAGTAATATATTTAA
*
15175555 AAAAA-AA-TTATAGCTATTTTATTAG
191 AAAAATAATTTATAACTATTTTATTAG
* *
15175580 TAATTTATGATTAGGTTACATAAAGTGCTAGTGTTTAGTGGTTTAGTGTATTATGATTTTTTAGT
1 TAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTATGATTTTTTAGT
* * *
15175645 AATGTATTTTTAAAAAAAAATAAATTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTACATA
66 AATGTATTTTT-AAAAAAAATAATTTTATAGTTATTTTGTTAGTAATTTATGATTAAGTTATA-A
* *
15175710 AATTGTTACTGTTTAGTGGTTCAGTGTATTAGTGTATTGTGATTTTTTAGTAATATATTTAAAAA
129 AATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTAGTAATATATTTAAAAA
15175775 AATAATTTTATAACTATTTTATTAG
194 AATAA-TTTATAACTATTTTATTAG
*
15175800 TAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTATGATTTTTTAGT
1 TAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTATGATTTTTTAGT
*
15175865 AATGTA--TTTAAAAAAAATAATTTTTTAGTTATTTTGTGTTAGTAATTTATG----A-TTAT-A
66 AATGTATTTTTAAAAAAAATAATTTTATAGTTA-TTT-TGTTAGTAATTTATGATTAAGTTATAA
15175922 AATTGTTAGTGTTTA-TGGTTTAGTGT
129 AATTGTTAGTGTTTAGTGGTTTAGTGT
15175948 TTTGTGATTT
Statistics
Matches: 335, Mismatches: 23, Indels: 26
0.87 0.06 0.07
Matches are distributed among these distances:
211 10 0.03
212 15 0.04
214 3 0.01
215 11 0.03
216 25 0.07
217 163 0.49
218 8 0.02
219 15 0.04
220 85 0.25
ACGTcount: A:0.32, C:0.02, G:0.17, T:0.50
Consensus pattern (217 bp):
TAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTATGATTTTTTAGT
AATGTATTTTTAAAAAAAATAATTTTATAGTTATTTTGTTAGTAATTTATGATTAAGTTATAAAA
TTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTAGTAATATATTTAAAAAAA
TAATTTATAACTATTTTATTAG
Found at i:15175705 original size:108 final size:107
Alignment explanation
Indices: 15175351--15175996 Score: 622
Period size: 108 Copynumber: 6.0 Consensus size: 107
15175341 TTATAGTTAT
* * *
15175351 TTATTTGGTTAATAATTTATGAGATTAGGTTAC--AAATTGTTAGTGTTTAGTGGTTTAGGGTAT
1 TTATTTTGTTAGTAATTTAT--GATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTAT
** ***
15175414 TGCGATTTTTTAGTAATGTAATTTTTTTTAAAAATAATTTTATAG
64 TATGATTTTTTAGTAATGT-ATTTTTAAAAAAAATAATTTTATAG
* * *
15175459 TTATTTTGTTAGTAATTTATGATTAAGTTATAAAAATTGTTAGTGTTTAGTGGTTTAGTGTATTA
1 TTATTTTGTTAGTAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTG---TA
*
15175524 GTGTATTGTGATTTTTTTAGTAA--TATATTT--AAAAAA-AA--TTATAG
63 -T-TA---TGA-TTTTTTAGTAATGTATTTTTAAAAAAAATAATTTTATAG
* * * *
15175568 CTATTTTATTAGTAATTTATGATTAGGTTACATAAAGTGCTAGTGTTTAGTGGTTTAGTGTATTA
1 TTATTTTGTTAGTAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTA
*
15175633 TGATTTTTTAGTAATGTATTTTTAAAAAAAAATAAATTTATAG
66 TGATTTTTTAGTAATGTATTTTT-AAAAAAAATAATTTTATAG
*
15175676 TTATTTTGTTAGTAATTTATGATTAGGTTACATAAATTGTTACTGTTTAGTGGTTCAGTGTATTA
1 TTATTTTGTTAGTAATTTATGATTAGGTTACATAAATTGTTAGTGTTTA---G-T--G-GT-TTA
* * *
15175741 GTGTATTGTGATTTTTTAGTAA--TATATTT-AAAAAAATAATTTTATAA
58 GTGTATTATGATTTTTTAGTAATGTATTTTTAAAAAAAATAATTTTATAG
* * *
15175788 CTATTTTATTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTA
1 TTATTTTGTTAGTAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTA
*
15175853 TGATTTTTTAGTAATGTA--TTTAAAAAAAATAATTTTTTAG
66 TGATTTTTTAGTAATGTATTTTTAAAAAAAATAATTTTATAG
*
15175893 TTATTTTGTGTTAGTAATTTATG---A--TT--ATAAATTGTTAGTGTTTA-TGGTTTAGTGTTT
1 TTA-TTT-TGTTAGTAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTAT
* * * **
15175950 TGTGATTTTTT--TAATGTAATTTTTATATAATGTAATTTTATA-
64 TATGATTTTTTAGTAATGT-ATTTTTAAAAAAAATAATTTTATAG
15175992 TTATT
1 TTATT
15175997 ATTTATTTAT
Statistics
Matches: 461, Mismatches: 42, Indels: 80
0.79 0.07 0.14
Matches are distributed among these distances:
97 6 0.01
98 3 0.01
99 25 0.05
100 45 0.10
101 3 0.01
102 8 0.02
104 30 0.07
105 27 0.06
106 19 0.04
107 14 0.03
108 95 0.21
109 60 0.13
111 5 0.01
112 68 0.15
113 1 0.00
114 12 0.03
115 3 0.01
116 26 0.06
117 11 0.02
ACGTcount: A:0.31, C:0.01, G:0.16, T:0.51
Consensus pattern (107 bp):
TTATTTTGTTAGTAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTA
TGATTTTTTAGTAATGTATTTTTAAAAAAAATAATTTTATAG
Found at i:15175988 original size:15 final size:16
Alignment explanation
Indices: 15175961--15175992 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
15175951 GTGATTTTTT
15175961 TAATGTAATTTTTATA
1 TAATGTAATTTTTATA
15175977 TAATGTAA-TTTTATA
1 TAATGTAATTTTTATA
15175992 T
1 T
15175993 TATTATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TAATGTAATTTTTATA
Found at i:15175988 original size:100 final size:99
Alignment explanation
Indices: 15175738--15175967 Score: 274
Period size: 104 Copynumber: 2.3 Consensus size: 99
15175728 GTTCAGTGTA
* * * *
15175738 TTAGTGTATTGTGATTTTTTAGTAATATATTT-AAAAAAATAATTTTATAACTA-TTT-TATTAG
1 TTAGTGTATTATGATTTTTTAGTAATGTATTTAAAAAAAATAATTTTAT-ATTATTTTGTGTTAG
15175800 TAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTGGT
65 TAATTTATG---A---T-TATAAATTGTTAGTGTTTAGTGGT
*
15175842 TTAGTGTATTATGATTTTTTAGTAATGTATTTAAAAAAAATAATTTTTTAGTTATTTTGTGTTAG
1 TTAGTGTATTATGATTTTTTAGTAATGTATTTAAAAAAAATAATTTTATA-TTATTTTGTGTTAG
15175907 TAATTTATGATTATAAATTGTTAGTGTTTA-TGGT
65 TAATTTATGATTATAAATTGTTAGTGTTTAGTGGT
* *
15175941 TTAGTGTTTTGTGATTTTTT--TAATGTA
1 TTAGTGTATTATGATTTTTTAGTAATGTA
15175968 ATTTTTATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 15
0.84 0.05 0.11
Matches are distributed among these distances:
97 7 0.06
99 22 0.19
100 19 0.17
101 1 0.01
104 32 0.28
105 17 0.15
106 3 0.03
107 14 0.12
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.53
Consensus pattern (99 bp):
TTAGTGTATTATGATTTTTTAGTAATGTATTTAAAAAAAATAATTTTATATTATTTTGTGTTAGT
AATTTATGATTATAAATTGTTAGTGTTTAGTGGT
Found at i:15176403 original size:22 final size:22
Alignment explanation
Indices: 15176378--15176422 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
15176368 CAACCAAATC
15176378 AATTCAACATATTT-TCAAGATA
1 AATTCAACATATTTAT-AAGATA
*
15176400 AATTCAGCATATTTATAAGATA
1 AATTCAACATATTTATAAGATA
15176422 A
1 A
15176423 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.47, C:0.11, G:0.07, T:0.36
Consensus pattern (22 bp):
AATTCAACATATTTATAAGATA
Found at i:15179107 original size:17 final size:16
Alignment explanation
Indices: 15179080--15179111 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
15179070 ATCAATATTT
15179080 TCATACAATTTTCATA
1 TCATACAATTTTCATA
15179096 TCATATCAATTTTCAT
1 TCATA-CAATTTTCAT
15179112 GCAAAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TCATACAATTTTCATA
Found at i:15184301 original size:45 final size:45
Alignment explanation
Indices: 15184234--15184323 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
15184224 TCTGGGAAAA
* * * *
15184234 CCCTTTTTGGCAACTGCTAAAACGATTATTGATGTTGGCATAGGT
1 CCCTTTTTAGCAACTGCCAAAACAATTATTGATGTTGGCACAGGT
15184279 CCCTTTTTAGCAACTGCCAAAACAATTATTGATGTTGGCACAGGT
1 CCCTTTTTAGCAACTGCCAAAACAATTATTGATGTTGGCACAGGT
15184324 GAACTCAAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (45 bp):
CCCTTTTTAGCAACTGCCAAAACAATTATTGATGTTGGCACAGGT
Found at i:15196699 original size:24 final size:24
Alignment explanation
Indices: 15196672--15196723 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
15196662 TTAGTAAGTC
*
15196672 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
15196696 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
15196720 AAAT
1 AAAT
15196724 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:15198669 original size:24 final size:24
Alignment explanation
Indices: 15198642--15198693 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
15198632 TTAGTAAGTC
*
15198642 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
15198666 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
15198690 AAAT
1 AAAT
15198694 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:15200548 original size:11 final size:10
Alignment explanation
Indices: 15200529--15200608 Score: 88
Period size: 11 Copynumber: 7.4 Consensus size: 10
15200519 TGATGTTGTT
15200529 TTTTGTGCTG
1 TTTTGTGCTG
15200539 TTTTGTTGCTG
1 TTTTG-TGCTG
*
15200550 TTTGGTGCTG
1 TTTTGTGCTG
15200560 TTTTGGTGCTG
1 TTTT-GTGCTG
15200571 TTTTGCTGCTG
1 TTTTG-TGCTG
15200582 TTTTAGTGCTG
1 TTTT-GTGCTG
*
15200593 GTTTGTTGCTG
1 TTTTG-TGCTG
15200604 CTTTT
1 -TTTT
15200609 TGTCATGTTT
Statistics
Matches: 60, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
10 15 0.25
11 41 0.68
12 4 0.07
ACGTcount: A:0.01, C:0.11, G:0.30, T:0.57
Consensus pattern (10 bp):
TTTTGTGCTG
Found at i:15200569 original size:32 final size:33
Alignment explanation
Indices: 15200528--15200608 Score: 101
Period size: 32 Copynumber: 2.5 Consensus size: 33
15200518 GTGATGTTGT
* * *
15200528 TTTTTGTGCTGTTTTGTTGCTG-TTTGGTGCTG
1 TTTTGGTGCTGTTTTGCTGCTGTTTTAGTGCTG
15200560 TTTTGGTGCTGTTTTGCTGCTGTTTTAGTGCTG
1 TTTTGGTGCTGTTTTGCTGCTGTTTTAGTGCTG
* *
15200593 GTTTGTTGCTGCTTTT
1 TTTTGGTGCTG-TTTT
15200609 TGTCATGTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
32 20 0.48
33 18 0.43
34 4 0.10
ACGTcount: A:0.01, C:0.11, G:0.30, T:0.58
Consensus pattern (33 bp):
TTTTGGTGCTGTTTTGCTGCTGTTTTAGTGCTG
Found at i:15200580 original size:22 final size:21
Alignment explanation
Indices: 15200529--15200608 Score: 97
Period size: 22 Copynumber: 3.7 Consensus size: 21
15200519 TGATGTTGTT
*
15200529 TTTTGTGCTGTTTTGTTGCTG
1 TTTTGTGCTGTTTTGGTGCTG
*
15200550 TTTGGTGCTGTTTTGGTGCTG
1 TTTTGTGCTGTTTTGGTGCTG
*
15200571 TTTTGCTGCTGTTTTAGTGCTG
1 TTTTG-TGCTGTTTTGGTGCTG
*
15200593 GTTTGTTGCTGCTTTT
1 TTTTG-TGCTG-TTTT
15200609 TGTCATGTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
21 23 0.45
22 24 0.47
23 4 0.08
ACGTcount: A:0.01, C:0.11, G:0.30, T:0.57
Consensus pattern (21 bp):
TTTTGTGCTGTTTTGGTGCTG
Found at i:15205179 original size:58 final size:58
Alignment explanation
Indices: 15205111--15205250 Score: 194
Period size: 58 Copynumber: 2.4 Consensus size: 58
15205101 TTTAATTCAT
*
15205111 ATAATAATTATATTAAGAATTTTATTAAATTATGTT-TTA-TTTTATTAAATTATATTTA
1 ATAATAATTATATTAA-AATTTAATTAAATTAT-TTATTATTTTTATTAAATTATATTTA
* * * *
15205169 ATAAAAATTATGTTAAAATATAATTAAATTATTTATTATTTTTATTAAATTATTTTTA
1 ATAATAATTATATTAAAATTTAATTAAATTATTTATTATTTTTATTAAATTATATTTA
*
15205227 ATAATAATTTTATTAAAATTTAAT
1 ATAATAATTATATTAAAATTTAAT
15205251 AACAATAACA
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
56 2 0.03
57 17 0.24
58 52 0.73
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (58 bp):
ATAATAATTATATTAAAATTTAATTAAATTATTTATTATTTTTATTAAATTATATTTA
Found at i:15205222 original size:14 final size:14
Alignment explanation
Indices: 15205203--15205243 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
15205193 TAAATTATTT
15205203 ATTATTTTTATTAA
1 ATTATTTTTATTAA
*
15205217 ATTATTTTTAAT-A
1 ATTATTTTTATTAA
*
15205230 A-TAATTTTATTAA
1 ATTATTTTTATTAA
15205243 A
1 A
15205244 ATTTAATAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 8 0.35
13 4 0.17
14 11 0.48
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTATTTTTATTAA
Found at i:15205458 original size:16 final size:16
Alignment explanation
Indices: 15205413--15205450 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
15205403 TAAATTACTG
15205413 ATTACAATTCTATTTC
1 ATTACAATTCTATTTC
15205429 ATTACAATTCTATTTC
1 ATTACAATTCTATTTC
15205445 ATTACA
1 ATTACA
15205451 GTCTTATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.34, C:0.18, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTACAATTCTATTTC
Found at i:15205489 original size:20 final size:20
Alignment explanation
Indices: 15205460--15205497 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15205450 AGTCTTATTG
*
15205460 TATTATAGTGAACCAGACTC
1 TATTACAGTGAACCAGACTC
*
15205480 TATTACAGTGAACTAGAC
1 TATTACAGTGAACCAGAC
15205498 GTACCCTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (20 bp):
TATTACAGTGAACCAGACTC
Found at i:15212873 original size:12 final size:12
Alignment explanation
Indices: 15212856--15212880 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15212846 TAAATCAACC
15212856 TAGAGACATCAT
1 TAGAGACATCAT
15212868 TAGAGACATCAT
1 TAGAGACATCAT
15212880 T
1 T
15212881 TCACATGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (12 bp):
TAGAGACATCAT
Found at i:15219106 original size:37 final size:37
Alignment explanation
Indices: 15219056--15219130 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
15219046 TTCTTCACAG
15219056 ATGACCTAATTTTGTTTTGCAAGGCAGACAGGGACCA
1 ATGACCTAATTTTGTTTTGCAAGGCAGACAGGGACCA
*
15219093 ATGACCTAATTTTGTTTTGTAAGGCAGACAGGGACCA
1 ATGACCTAATTTTGTTTTGCAAGGCAGACAGGGACCA
15219130 A
1 A
15219131 GTCATACTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (37 bp):
ATGACCTAATTTTGTTTTGCAAGGCAGACAGGGACCA
Found at i:15221656 original size:18 final size:20
Alignment explanation
Indices: 15221621--15221661 Score: 50
Period size: 18 Copynumber: 2.1 Consensus size: 20
15221611 TATAATTTTT
*
15221621 AAAATATATATAATACATCA
1 AAAATATATATAAAACATCA
*
15221641 AAAATAT-TA-AAAACATTA
1 AAAATATATATAAAACATCA
15221659 AAA
1 AAA
15221662 TAAATATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 10 0.53
19 2 0.11
20 7 0.37
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (20 bp):
AAAATATATATAAAACATCA
Found at i:15221893 original size:21 final size:22
Alignment explanation
Indices: 15221856--15221896 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
15221846 AAATAGTTAA
15221856 AAAACAATAAGAAAATAGCAAG
1 AAAACAATAAGAAAATAGCAAG
*
15221878 AAAATAATAA-AAAATAGCA
1 AAAACAATAAGAAAATAGCA
15221897 GTTTTTTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.71, C:0.07, G:0.10, T:0.12
Consensus pattern (22 bp):
AAAACAATAAGAAAATAGCAAG
Found at i:15223680 original size:18 final size:19
Alignment explanation
Indices: 15223659--15223718 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 19
15223649 AATCGGTTAA
*
15223659 TCAGTAAT-ATTCATTTAT
1 TCAGTAATCAGTCATTTAT
15223677 TCAGT-ATCAGTCATTTAT
1 TCAGTAATCAGTCATTTAT
* **
15223695 TCTGTAA-CAGTCAAATAT
1 TCAGTAATCAGTCATTTAT
15223713 TCAGTA
1 TCAGTA
15223719 GCAGACAGTC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 2 0.06
18 32 0.91
19 1 0.03
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (19 bp):
TCAGTAATCAGTCATTTAT
Found at i:15223869 original size:12 final size:12
Alignment explanation
Indices: 15223844--15223878 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
15223834 AAAATACACC
* *
15223844 GTAACGGTAACA
1 GTAACAGTAGCA
15223856 GTAACAGTAGCA
1 GTAACAGTAGCA
15223868 GTAACAGTAGC
1 GTAACAGTAGC
15223879 GGTACACAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.40, C:0.17, G:0.26, T:0.17
Consensus pattern (12 bp):
GTAACAGTAGCA
Found at i:15224984 original size:22 final size:21
Alignment explanation
Indices: 15224957--15224997 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
15224947 TCTCCTATTC
*
15224957 TTCTCTGTTTCGTTTGCTTTGT
1 TTCTCTGTTTCATTT-CTTTGT
*
15224979 TTCTCTTTTTCATTTCTTT
1 TTCTCTGTTTCATTTCTTT
15224998 TATTTCATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.02, C:0.20, G:0.10, T:0.68
Consensus pattern (21 bp):
TTCTCTGTTTCATTTCTTTGT
Found at i:15225080 original size:19 final size:19
Alignment explanation
Indices: 15225043--15225081 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
15225033 TTATAATATT
* **
15225043 TATTATTTATACATGTGTA
1 TATTATTAATACACATGTA
15225062 TATTATTAATACACATGTA
1 TATTATTAATACACATGTA
15225081 T
1 T
15225082 TCATTTATCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.49
Consensus pattern (19 bp):
TATTATTAATACACATGTA
Found at i:15255510 original size:22 final size:22
Alignment explanation
Indices: 15255482--15255533 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
15255472 TTAGATTTTT
**
15255482 TCTCAAGACAAAGGCCCTATTG
1 TCTCAAGACAAACACCCTATTG
**
15255504 TCTCAAGACCTACACCCTATTG
1 TCTCAAGACAAACACCCTATTG
15255526 TCTCAAGA
1 TCTCAAGA
15255534 TAGGGCAACT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.25
Consensus pattern (22 bp):
TCTCAAGACAAACACCCTATTG
Found at i:15257109 original size:32 final size:31
Alignment explanation
Indices: 15257073--15257148 Score: 82
Period size: 32 Copynumber: 2.5 Consensus size: 31
15257063 AAAGTATAAT
* *
15257073 TTTTTGGACAAGTTGATATACTAACTAGGTAC
1 TTTTTGGACAAGTTGAGATACCAACTA-GTAC
* * *
15257105 TTTTTGGATAAGTTTAGGTACCAACTAGTAC
1 TTTTTGGACAAGTTGAGATACCAACTAGTAC
*
15257136 -TTTTGGACTAGTT
1 TTTTTGGACAAGTT
15257149 CAAGGGGGAA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
30 11 0.30
31 4 0.11
32 22 0.59
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.41
Consensus pattern (31 bp):
TTTTTGGACAAGTTGAGATACCAACTAGTAC
Found at i:15260456 original size:9 final size:9
Alignment explanation
Indices: 15260437--15260478 Score: 57
Period size: 9 Copynumber: 4.4 Consensus size: 9
15260427 TTTTTTAAAA
15260437 TTTCTTTTTT
1 TTTC-TTTTT
15260447 TTTCTTTTT
1 TTTCTTTTT
*
15260456 TTTCTTTAT
1 TTTCTTTTT
15260465 TTTCTTTATT
1 TTTCTTT-TT
15260475 TTTC
1 TTTC
15260479 ATCCTTTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 20 0.69
10 9 0.31
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTCTTTTT
Found at i:15260486 original size:19 final size:18
Alignment explanation
Indices: 15260446--15260488 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
15260436 ATTTCTTTTT
* *
15260446 TTTTCTTTTTTTTCTTTA
1 TTTTCTTTTTTTTCATCA
*
15260464 TTTTCTTTATTTTTCATCC
1 TTTTCTTT-TTTTTCATCA
15260483 TTTTCT
1 TTTTCT
15260489 GCTTCTCCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTCTTTTTTTTCATCA
Found at i:15261330 original size:2 final size:2
Alignment explanation
Indices: 15261325--15261353 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
15261315 CATATATATA
15261325 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
15261354 TTTCTTTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:15263221 original size:15 final size:15
Alignment explanation
Indices: 15263180--15263213 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
15263170 ATAAAAGAAG
15263180 AATAATTAGAT-TAAA
1 AATAATTA-ATATAAA
15263195 AATAATTAATATAAA
1 AATAATTAATATAAA
15263210 AATA
1 AATA
15263214 TTCAATATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 2 0.11
15 16 0.89
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (15 bp):
AATAATTAATATAAA
Found at i:15263871 original size:33 final size:33
Alignment explanation
Indices: 15263834--15263903 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
15263824 AAATTAATTT
* * *
15263834 ATATTTTATGTATCATTATATTAAGTTATTTAA
1 ATATTTTATGTATCACTATAATAAATTATTTAA
* *
15263867 ATATTTTATTTATTACTATAATAAATTATTTAA
1 ATATTTTATGTATCACTATAATAAATTATTTAA
15263900 ATAT
1 ATAT
15263904 AATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (33 bp):
ATATTTTATGTATCACTATAATAAATTATTTAA
Found at i:15263912 original size:31 final size:32
Alignment explanation
Indices: 15263850--15263917 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 32
15263840 TATGTATCAT
* * *
15263850 TATATTAAGTTATTTAAATATTTTATTTATTAC
1 TATAATAAATTATTTAAATA-TTAATTTATTAC
*
15263883 TATAATAAATTATTTAAATA-TAATTTATTAT
1 TATAATAAATTATTTAAATATTAATTTATTAC
15263914 TATA
1 TATA
15263918 TTTAAGTAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 13 0.42
33 18 0.58
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (32 bp):
TATAATAAATTATTTAAATATTAATTTATTAC
Found at i:15267348 original size:55 final size:55
Alignment explanation
Indices: 15267158--15267412 Score: 273
Period size: 55 Copynumber: 4.8 Consensus size: 55
15267148 ACATGGGTAC
* * * *
15267158 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-T-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
*
15267207 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
** * * *
15267260 CGCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAGAAA
* *
15267315 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCC-T-TAGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
*
15267368 CCTTACCAATTGCCATG-CTTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGTC-TTGACATGGTCTTACATGGTATCCTT
15267413 AAACCCTAAT
Statistics
Matches: 175, Mismatches: 19, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 2 0.01
53 51 0.29
54 12 0.07
55 69 0.39
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (55 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
Found at i:15267349 original size:108 final size:109
Alignment explanation
Indices: 15267203--15267405 Score: 322
Period size: 108 Copynumber: 1.9 Consensus size: 109
15267193 GTATCCTTTT
* *
15267203 GAAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AACGC-ACC
1 GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAAC-CTACC
15267266 AA-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
64 AATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
*
15267311 GAAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTTACCA
1 GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACC-TACCA
*
15267376 ATTGCCATGCTTTGGCATGGTCTTACATGG
65 ATTGCCATGCCTTGGCATGGTCTTACATGG
15267406 TATCCTTAAA
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
107 2 0.02
108 53 0.61
109 5 0.06
110 27 0.31
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (109 bp):
GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTACCAA
TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
Found at i:15269113 original size:22 final size:21
Alignment explanation
Indices: 15269079--15269129 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 21
15269069 AAGTTTAAAT
15269079 AATTTTGAATTAT-TTATTTTAA
1 AATTTT-AATTATATT-TTTTAA
15269101 AATTTTAATTTATATTTTTTAA
1 AATTTTAA-TTATATTTTTTAA
*
15269123 ATTTTTA
1 AATTTTA
15269130 GAATCGCGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 2 0.08
22 22 0.85
23 2 0.08
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
AATTTTAATTATATTTTTTAA
Found at i:15270868 original size:26 final size:26
Alignment explanation
Indices: 15270837--15270930 Score: 67
Period size: 26 Copynumber: 3.7 Consensus size: 26
15270827 ATAAGATTAT
15270837 TATTAAATATAATTTAACAATAAATAA
1 TATTAAATATAATTTAA-AATAAATAA
* *
15270864 T-TT-AATCATATTTTAATAT-AATAA
1 TATTAAAT-ATAATTTAAAATAAATAA
*
15270888 TGATTAAATATAAATTAATAA-AAATAA
1 T-ATTAAATATAATTTAA-AATAAATAA
*
15270915 GA-T--ATATAATTTAAAA
1 TATTAAATATAATTTAAAA
15270931 ACATTCTTAC
Statistics
Matches: 54, Mismatches: 7, Indels: 17
0.69 0.09 0.22
Matches are distributed among these distances:
22 2 0.04
23 10 0.19
24 6 0.11
25 6 0.11
26 20 0.37
27 10 0.19
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (26 bp):
TATTAAATATAATTTAAAATAAATAA
Found at i:15273610 original size:26 final size:26
Alignment explanation
Indices: 15273581--15273685 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
15273571 TGGTACAAAT
15273581 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
15273607 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15273633 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
15273659 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15273685 T
1 T
15273686 AATGGGCATT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:15278150 original size:13 final size:14
Alignment explanation
Indices: 15278132--15278166 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
15278122 ATAGGGGTAG
15278132 GATTCTGTATATCT
1 GATTCTGTATATCT
*
15278146 G-TTCTGCATATCT
1 GATTCTGTATATCT
15278159 GATTCTGT
1 GATTCTGT
15278167 TCTCTGAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.49
Consensus pattern (14 bp):
GATTCTGTATATCT
Found at i:15280694 original size:42 final size:42
Alignment explanation
Indices: 15280647--15280730 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
15280637 TTAGTTACCT
15280647 TACAATTGTAATGCAAGTATAACATAATCATGGTTTTACTTA
1 TACAATTGTAATGCAAGTATAACATAATCATGGTTTTACTTA
15280689 TACAATTGTAATGCAAGTATAACATAATCATGGTTTTACTTA
1 TACAATTGTAATGCAAGTATAACATAATCATGGTTTTACTTA
15280731 CTCAAAAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (42 bp):
TACAATTGTAATGCAAGTATAACATAATCATGGTTTTACTTA
Found at i:15281698 original size:22 final size:22
Alignment explanation
Indices: 15281654--15281698 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
15281644 AAAATAAATC
* * * *
15281654 AAAATTTATGAAAATTTATTAT
1 AAAATTAATCAAAATTCAATAT
15281676 AAAATTAATCAAAATTCAATAT
1 AAAATTAATCAAAATTCAATAT
15281698 A
1 A
15281699 TTAATAATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (22 bp):
AAAATTAATCAAAATTCAATAT
Found at i:15284584 original size:16 final size:15
Alignment explanation
Indices: 15284565--15284598 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
15284555 ATAATAATTC
*
15284565 AATAAATTAAAATTTA
1 AATAAA-TAAAATTGA
15284581 AATAAATAAAATTGA
1 AATAAATAAAATTGA
15284596 AAT
1 AAT
15284599 TTAGGAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (15 bp):
AATAAATAAAATTGA
Found at i:15294690 original size:43 final size:42
Alignment explanation
Indices: 15294623--15294733 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 42
15294613 AACAAGTACA
* * ** *
15294623 ATGCCGATGTCCCGGACGTGGTCTTACATGTAACTCA-ATATCG
1 ATGCCGATATCCCAGACAAGGTCTTACATG-AAATCAGATA-CG
**
15294666 ATGCCTCTATCCCAGACAAGGTCTTACATGAAATCAGATACG
1 ATGCCGATATCCCAGACAAGGTCTTACATGAAATCAGATACG
* *
15294708 ATGCCGATGTCCCAGACATGGTCTTA
1 ATGCCGATATCCCAGACAAGGTCTTA
15294734 TACGTAAATC
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 29 0.52
43 27 0.48
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (42 bp):
ATGCCGATATCCCAGACAAGGTCTTACATGAAATCAGATACG
Found at i:15294721 original size:42 final size:43
Alignment explanation
Indices: 15294623--15294779 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
15294613 AACAAGTACA
* * *
15294623 ATGCCGATGTCCCGGACGTGGTCTTACATGTAACTCAATATCG
1 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCAATATCG
** * *
15294666 ATGCCTCTATCCCAGACAAGGTCTTACATG-AAATCAGATA-CG
1 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCA-ATATCG
* * *
15294708 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTCA-ATCG
1 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATC-AATATCG
* * *
15294751 AGGCCTG-TGTCCCAGACACGGCCTTACAT
1 ATGCC-GATGTCCCAGACATGGTCTTACAT
15294780 AATGTCTCAG
Statistics
Matches: 90, Mismatches: 19, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
42 32 0.36
43 57 0.63
44 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCAATATCG
Found at i:15294766 original size:85 final size:85
Alignment explanation
Indices: 15294623--15294779 Score: 201
Period size: 85 Copynumber: 1.8 Consensus size: 85
15294613 AACAAGTACA
* * * * *
15294623 ATGCCGATGTCCCGGACGTGGTCTTACATGTAACTCAATATCGATGCCTCTATCCCAGACAAGGT
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAACTCAATATCGAGGCCTCTATCCCAGACAAGGC
15294688 CTTACATGAAATCAGATACG
66 CTTACATGAAATCAGATACG
* * * *
15294708 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTC-A-ATCGAGGCCTGTGTCCCAGACACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGT-AA-CTCAATATCGAGGCCTCTATCCCAGACAAG
15294771 GCCTTACAT
64 GCCTTACAT
15294780 AATGTCTCAG
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
85 55 0.90
86 3 0.05
87 3 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (85 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGTAACTCAATATCGAGGCCTCTATCCCAGACAAGGC
CTTACATGAAATCAGATACG
Found at i:15302519 original size:13 final size:13
Alignment explanation
Indices: 15302501--15302530 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
15302491 AAACTAGATT
*
15302501 TTAACTAAGTAAA
1 TTAACTAAGAAAA
15302514 TTAACTAAGAAAA
1 TTAACTAAGAAAA
15302527 TTAA
1 TTAA
15302531 AAGGTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (13 bp):
TTAACTAAGAAAA
Found at i:15309965 original size:26 final size:26
Alignment explanation
Indices: 15309895--15309975 Score: 74
Period size: 26 Copynumber: 3.0 Consensus size: 26
15309885 AAAAAATCAA
*
15309895 AATTTTTATA-ATTGTATAATTTTATAAAT
1 AATTTATATATATT-TA-AATTTT-T-AAT
15309924 AATTATATATATATTTAAATTTTTAAT
1 AATT-TATATATATTTAAATTTTTAAT
* **
15309951 AATTTGTATATATTTCTATTTTTAA
1 AATTTATATATATTTAAATTTTTAA
15309976 ATAGTTATGT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
26 18 0.39
27 7 0.15
28 1 0.02
29 10 0.22
30 7 0.15
31 3 0.07
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (26 bp):
AATTTATATATATTTAAATTTTTAAT
Found at i:15309973 original size:27 final size:27
Alignment explanation
Indices: 15309919--15309983 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
15309909 TATAATTTTA
15309919 TAAATAATTATATATATATTTAAATTT
1 TAAATAATTATATATATATTTAAATTT
* * * *
15309946 TTAATAATT-TGTATATATTTCTATTTT
1 TAAATAATTATATATATATTT-AAATTT
*
15309973 TAAATAGTTAT
1 TAAATAATTAT
15309984 GTTTTTTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
26 10 0.33
27 19 0.63
28 1 0.03
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (27 bp):
TAAATAATTATATATATATTTAAATTT
Found at i:15314777 original size:27 final size:27
Alignment explanation
Indices: 15314746--15314923 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
15314736 TAAATTGTAC
15314746 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
15314773 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
15314799 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
15314827 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
15314855 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
15314882 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
15314909 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
15314924 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:15314860 original size:82 final size:81
Alignment explanation
Indices: 15314747--15314902 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
15314737 AAATTGTACA
* *
15314747 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
15314811 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
15314828 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
15314893 TGCGAGTTGA
65 TGCGAATTGA
15314903 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:15314914 original size:82 final size:81
Alignment explanation
Indices: 15314743--15314923 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
15314733 GATTAAATTG
* *
15314743 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
15314808 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
15314824 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
15314888 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
15314906 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
15314924 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:15322833 original size:27 final size:27
Alignment explanation
Indices: 15322802--15322979 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
15322792 TAAATTGTAC
15322802 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
15322829 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
15322855 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
15322883 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
15322911 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
15322938 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
15322965 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
15322980 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:15322916 original size:82 final size:81
Alignment explanation
Indices: 15322803--15322958 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
15322793 AAATTGTACA
* *
15322803 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
15322867 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
15322884 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
15322949 TGCGAGTTGA
65 TGCGAATTGA
15322959 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:15322970 original size:82 final size:81
Alignment explanation
Indices: 15322799--15322979 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
15322789 GATTAAATTG
* *
15322799 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
15322864 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
15322880 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
15322944 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
15322962 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
15322980 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:15324398 original size:46 final size:47
Alignment explanation
Indices: 15324331--15324722 Score: 499
Period size: 46 Copynumber: 8.4 Consensus size: 47
15324321 GGGTGTTACA
* * * **
15324331 AAGACCATGGTTGAAACATACCATGGCAACCTGATATG-AAATGCGT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAATGAAT
***
15324377 AAGACCATGGTTGAAAGATACCATGGCAACATGATGGGAAAATGAAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAATGAAT
** * * **
15324424 AAGACCATGGTTGAAAGATACCACAGCAACGTGATATG-AAATGTGT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAATGAAT
* * *
15324470 AAGACCATGGTTAAAAGATACCATGGCAACGTGATATG-AAATGAAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAATGAAT
* *
15324516 AAGACCATGGTTGAAAGATACCATGGTAATC-TGACATG-AAATGAGT
1 AAGACCATGGTTGAAAGATACCATGGCAA-CATGACATGAAAATGAAT
*
15324562 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAAATGAAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAATGAAT
**
15324609 AAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAATGAAT
* *
15324656 AAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAACGAGT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAATGAAT
* *
15324702 AAAACCATAGTTGAAAGATAC
1 AAGACCATGGTTGAAAGATAC
15324723 TATGACATCA
Statistics
Matches: 311, Mismatches: 31, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.00
46 182 0.59
47 128 0.41
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (47 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAATGAAT
Found at i:15324490 original size:93 final size:92
Alignment explanation
Indices: 15324331--15324722 Score: 536
Period size: 93 Copynumber: 4.2 Consensus size: 92
15324321 GGGTGTTACA
* * *
15324331 AAGACCATGGTTGAAACATACCATGGCAACCTGATATGAAATGCGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAA-CTGACATGAAATGAGTAAGACCATGGTTGAAAGAT
*
15324396 ACCATGGCAACATGATGGGAAAATGAAT
65 ACCATGGCAACATGATAGGAAAATGAAT
** * * *
15324424 AAGACCATGGTTGAAAGATACCACAGCAACGTGATATGAAATGTGTAAGACCATGGTTAAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAAC-TGACATGAAATGAGTAAGACCATGGTTGAAAGAT
* *
15324489 ACCATGGCAACGTGATATG-AAATGAAT
65 ACCATGGCAACATGATAGGAAAATGAAT
*
15324516 AAGACCATGGTTGAAAGATACCATGGTAATCTGACATGAAATGAGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAA-CTGACATGAAATGAGTAAGACCATGGTTGAAAGAT
*
15324581 ACCATGGCAACATGACAGGAAAATGAAT
65 ACCATGGCAACATGATAGGAAAATGAAT
** *
15324609 AAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAAGACCATGGTTGAAAGA
1 AAGACCATGGTTGAAAGATACCATGGCAAC-TGACATG-AAATGAGTAAGACCATGGTTGAAAGA
* * *
15324674 TACCATGGCAACATGACA-GAAAACGAGT
64 TACCATGGCAACATGATAGGAAAATGAAT
* *
15324702 AAAACCATAGTTGAAAGATAC
1 AAGACCATGGTTGAAAGATAC
15324723 TATGACATCA
Statistics
Matches: 269, Mismatches: 25, Indels: 10
0.88 0.08 0.03
Matches are distributed among these distances:
92 83 0.31
93 143 0.53
94 43 0.16
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (92 bp):
AAGACCATGGTTGAAAGATACCATGGCAACTGACATGAAATGAGTAAGACCATGGTTGAAAGATA
CCATGGCAACATGATAGGAAAATGAAT
Found at i:15326416 original size:17 final size:19
Alignment explanation
Indices: 15326394--15326441 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
15326384 AACATTCAAT
*
15326394 TATTCAGTAA-AA-TCAGA
1 TATTCAGTAACAATTAAGA
*
15326411 TATTCAGTAACAATTAAGT
1 TATTCAGTAACAATTAAGA
15326430 TATTCAGTAACA
1 TATTCAGTAACA
15326442 GTCATTCATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 10 0.37
18 2 0.07
19 15 0.56
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.33
Consensus pattern (19 bp):
TATTCAGTAACAATTAAGA
Found at i:15326545 original size:18 final size:18
Alignment explanation
Indices: 15326282--15326559 Score: 145
Period size: 18 Copynumber: 15.1 Consensus size: 18
15326272 TCATTAACAA
* *
15326282 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAATTAT
* * *
15326299 TCAGCAACAGTCAGTTAT
1 TCAGTAACAATCAATTAT
*
15326317 TCGGTAACAATCAATTAT
1 TCAGTAACAATCAATTAT
* * * *
15326335 TCAATAATAACCAGTTAT
1 TCAGTAACAATCAATTAT
*
15326353 TCAGTATCGATCAATTGATCAGTTAT
1 TCAGTA---A-C-A---ATCAATTAT
* * *
15326379 CCAATAACATTCAATTAT
1 TCAGTAACAATCAATTAT
15326397 TCAGTAA-AATCAGA-TAT
1 TCAGTAACAATCA-ATTAT
*
15326414 TCAGTAACAATTAAGTTAT
1 TCAGTAACAATCAA-TTAT
*
15326433 TCAGTAACAGTC-ATTCAT
1 TCAGTAACAATCAATT-AT
* **
15326451 TCAGTGACAATCAGCTAT
1 TCAGTAACAATCAATTAT
* **
15326469 CCAGTAATGATCAATTAT
1 TCAGTAACAATCAATTAT
*
15326487 TCAGTAACAGTCTAA-TA-
1 TCAGTAACAATC-AATTAT
*
15326504 TCTAGTAACAATCAATTCT
1 TC-AGTAACAATCAATTAT
* *
15326523 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAATTAT
* *
15326541 TCAGTAATAATCAGTTAT
1 TCAGTAACAATCAATTAT
15326559 T
1 T
15326560 TTATACCTTT
Statistics
Matches: 194, Mismatches: 48, Indels: 37
0.70 0.17 0.13
Matches are distributed among these distances:
17 25 0.13
18 135 0.70
19 17 0.09
21 2 0.01
22 1 0.01
23 2 0.01
26 12 0.06
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.34
Consensus pattern (18 bp):
TCAGTAACAATCAATTAT
Found at i:15326804 original size:45 final size:45
Alignment explanation
Indices: 15326755--15326840 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
15326745 AACACACAAA
* * *
15326755 ACACACAAAGTTCTGAATCGATAACGGTAATAGTAACAGTATTCG
1 ACACACAAAGTGCCGAATCGATAACAGTAATAGTAACAGTATTCG
* *
15326800 ACACACAAAGTGCCGAATCGGTAACAGTAATGGTAACAGTA
1 ACACACAAAGTGCCGAATCGATAACAGTAATAGTAACAGTA
15326841 ACAGTAGTCG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.21
Consensus pattern (45 bp):
ACACACAAAGTGCCGAATCGATAACAGTAATAGTAACAGTATTCG
Found at i:15328459 original size:22 final size:22
Alignment explanation
Indices: 15328434--15328484 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
15328424 TTTCATTCTG
*
15328434 TTTCTTTTCTATCTCTTTTTTT
1 TTTCTTTTCTATCTCTTTTGTT
* * *
15328456 TTTCATTTCTTTTTCTTTTGTT
1 TTTCTTTTCTATCTCTTTTGTT
*
15328478 TTACTTT
1 TTTCTTT
15328485 ATATATATAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.06, C:0.16, G:0.02, T:0.76
Consensus pattern (22 bp):
TTTCTTTTCTATCTCTTTTGTT
Found at i:15328466 original size:16 final size:16
Alignment explanation
Indices: 15328424--15328474 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 16
15328414 CTCTGTTTCG
* *
15328424 TTTCA-TTCTGTTTCT
1 TTTCATTTCTTTTTTT
*
15328439 TTTCTATCTCTTTTTTT
1 TTTC-ATTTCTTTTTTT
15328456 TTTCATTTCTTTTTCTT
1 TTTCATTTCTTTTT-TT
15328473 TT
1 TT
15328475 GTTTTACTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 4 0.14
16 10 0.34
17 15 0.52
ACGTcount: A:0.06, C:0.18, G:0.02, T:0.75
Consensus pattern (16 bp):
TTTCATTTCTTTTTTT
Found at i:15328499 original size:12 final size:12
Alignment explanation
Indices: 15328482--15328506 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15328472 TTTGTTTTAC
15328482 TTTATATATATA
1 TTTATATATATA
15328494 TTTATATATATA
1 TTTATATATATA
15328506 T
1 T
15328507 ATAATATGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTATATATATA
Found at i:15328644 original size:31 final size:32
Alignment explanation
Indices: 15328588--15328650 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
15328578 CACACTTGTC
*
15328588 ATAATTTAATATATTTATTACATAAAAATCTT
1 ATAATATAATATATTTATTACATAAAAATCTT
*
15328620 ATAATATAAT-TATTTAATTA-ATAAATATCTT
1 ATAATATAATATATTT-ATTACATAAAAATCTT
15328651 TTATAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 15 0.54
32 13 0.46
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (32 bp):
ATAATATAATATATTTATTACATAAAAATCTT
Found at i:15346413 original size:32 final size:29
Alignment explanation
Indices: 15346377--15346441 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 29
15346367 TAGTAATGTT
*
15346377 TTTTAAAAAATCAATTTTTTATATTTTTATAA
1 TTTT-AAAAA-CAATTTTTTATATATTT-TAA
*
15346409 TTTTATAAACAATTTTTTATATATTTTAA
1 TTTTAAAAACAATTTTTTATATATTTTAA
15346438 TTTT
1 TTTT
15346442 TTTTAAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 7 0.23
30 16 0.52
31 4 0.13
32 4 0.13
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (29 bp):
TTTTAAAAACAATTTTTTATATATTTTAA
Found at i:15346444 original size:18 final size:19
Alignment explanation
Indices: 15346421--15346471 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
15346411 TTATAAACAA
*
15346421 TTTTTTATATATTTTAATT
1 TTTTTTATATATTTTAATG
*
15346440 TTTTTTA-AAATTTTAATG
1 TTTTTTATATATTTTAATG
* *
15346458 ATTTGTATATATTT
1 TTTTTTATATATTT
15346472 ATATTTTTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 14 0.54
19 12 0.46
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (19 bp):
TTTTTTATATATTTTAATG
Found at i:15351782 original size:5 final size:6
Alignment explanation
Indices: 15351763--15351887 Score: 58
Period size: 6 Copynumber: 19.2 Consensus size: 6
15351753 ACTTTCTCAC
*
15351763 TTTCTT TTTCTT TTTCTT TTTCATCT TTT-TAT TTTCTCGT TTTCTT TTCACTT
1 TTTCTT TTTCTT TTTCTT TTTC-T-T TTTCT-T TTTCT--T TTTCTT TT-TCTT
* * * *
15351816 TTTTTT TGTTGTT TTTC-C TCTCTT TTTCTCAT TTT-TCT TTTCTT TTTCATT
1 TTTCTT T-TTCTT TTTCTT TTTCTT TTTCT--T TTTCT-T TTTCTT TTTC-TT
*
15351867 TTCACTCT TTTCTT TTTCTT T
1 TT-TCT-T TTTCTT TTTCTT T
15351888 CATTTGATCT
Statistics
Matches: 92, Mismatches: 14, Indels: 26
0.70 0.11 0.20
Matches are distributed among these distances:
5 3 0.03
6 50 0.54
7 21 0.23
8 18 0.20
ACGTcount: A:0.05, C:0.19, G:0.02, T:0.74
Consensus pattern (6 bp):
TTTCTT
Found at i:15351791 original size:21 final size:20
Alignment explanation
Indices: 15351765--15351885 Score: 65
Period size: 21 Copynumber: 6.0 Consensus size: 20
15351755 TTTCTCACTT
15351765 TCTTTTTCTTTTTCTTTTTC
1 TCTTTTTCTTTTTCTTTTTC
* *
15351785 ATCTTTTTATTTTCTCGTTTTC
1 -TCTTTTTCTTTT-TCTTTTTC
**
15351807 T-TTTCACTTTTT-TTTTGT-
1 TCTTTTTCTTTTTCTTTT-TC
* * *
15351825 TGTTTTTC-CTCTCTTTTTC
1 TCTTTTTCTTTTTCTTTTTC
15351844 TCATTTTTC-TTTTCTTTTTC
1 TC-TTTTTCTTTTTCTTTTTC
**
15351864 AT-TTTCACTCTTTTCTTTTTC
1 -TCTTTTTCT-TTTTCTTTTTC
15351885 T
1 T
15351886 TTCATTTGAT
Statistics
Matches: 76, Mismatches: 15, Indels: 19
0.69 0.14 0.17
Matches are distributed among these distances:
18 7 0.09
19 15 0.20
20 23 0.30
21 24 0.32
22 7 0.09
ACGTcount: A:0.05, C:0.20, G:0.02, T:0.73
Consensus pattern (20 bp):
TCTTTTTCTTTTTCTTTTTC
Found at i:15351810 original size:13 final size:13
Alignment explanation
Indices: 15351763--15351822 Score: 61
Period size: 13 Copynumber: 4.6 Consensus size: 13
15351753 ACTTTCTCAC
15351763 TTTCTTTT-TCTT
1 TTTCTTTTCTCTT
15351775 TTTCTTTTTCATCTT
1 TTTC-TTTTC-TCTT
* *
15351790 TTTATTTTCTCGT
1 TTTCTTTTCTCTT
*
15351803 TTTCTTTTCACTT
1 TTTCTTTTCTCTT
15351816 TTT-TTTT
1 TTTCTTTT
15351823 GTTGTTTTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
12 8 0.20
13 20 0.50
14 5 0.12
15 7 0.17
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.77
Consensus pattern (13 bp):
TTTCTTTTCTCTT
Found at i:15355128 original size:33 final size:33
Alignment explanation
Indices: 15355075--15355140 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
15355065 AACATCAGCA
* *
15355075 CACCATACATTGAAGTCATCCATGCATGTACCT
1 CACCATACATTAAAGCCATCCATGCATGTACCT
*
15355108 CACCATGCATTAAAGCCATCCATGCATGTACCT
1 CACCATACATTAAAGCCATCCATGCATGTACCT
15355141 TTGCACTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.30, C:0.32, G:0.12, T:0.26
Consensus pattern (33 bp):
CACCATACATTAAAGCCATCCATGCATGTACCT
Found at i:15357064 original size:20 final size:21
Alignment explanation
Indices: 15357027--15357067 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
15357017 ATATTTTCAA
15357027 TAAAATATTAAGAATATTATT
1 TAAAATATTAAGAATATTATT
15357048 TAAAAT-TTAA-AATTATTATT
1 TAAAATATTAAGAA-TATTATT
15357068 AATGTTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 11 0.58
21 6 0.32
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (21 bp):
TAAAATATTAAGAATATTATT
Found at i:15358076 original size:16 final size:16
Alignment explanation
Indices: 15358045--15358081 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
15358035 ATGTGAAGAA
15358045 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
15358061 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
15358077 TATTA
1 TATTA
15358082 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:15358242 original size:20 final size:19
Alignment explanation
Indices: 15358180--15358242 Score: 54
Period size: 20 Copynumber: 3.2 Consensus size: 19
15358170 TTAAATATGT
*
15358180 ATATTTAATAATTTTAAAAA
1 ATATTTAAT-ATTTTTAAAA
* * **
15358200 ATATATAATATCTTATATTA
1 ATATTTAATAT-TTTTAAAA
15358220 ATATTTCAATATTTTTAAAA
1 ATATTT-AATATTTTTAAAA
15358240 ATA
1 ATA
15358243 AAAATAAAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
19 2 0.06
20 25 0.78
21 5 0.16
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (19 bp):
ATATTTAATATTTTTAAAA
Found at i:15371121 original size:10 final size:11
Alignment explanation
Indices: 15371067--15371122 Score: 60
Period size: 11 Copynumber: 5.1 Consensus size: 11
15371057 TAGTTTAGCA
*
15371067 TAAATATAAATA
1 TAAATAT-AATT
*
15371079 TAAATATATTT
1 TAAATATAATT
* *
15371090 TATATTTAATT
1 TAAATATAATT
15371101 TAAATATAATT
1 TAAATATAATT
15371112 TAAA-ATAATT
1 TAAATATAATT
15371122 T
1 T
15371123 TTTAGTCATT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
10 7 0.19
11 23 0.62
12 7 0.19
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TAAATATAATT
Found at i:15376354 original size:11 final size:11
Alignment explanation
Indices: 15376338--15376363 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15376328 CATTAACCCC
15376338 AAAAAAAGAAA
1 AAAAAAAGAAA
15376349 AAAAAAAGAAA
1 AAAAAAAGAAA
15376360 AAAA
1 AAAA
15376364 TTAGGCCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:15376862 original size:43 final size:43
Alignment explanation
Indices: 15376770--15376872 Score: 136
Period size: 43 Copynumber: 2.4 Consensus size: 43
15376760 AATATTTTAT
* * **
15376770 AATAATATCTTATAATATCTTATTAGGAATCAAATTGTTAAGA
1 AATAGTATCTTATAATATCTCATTAGGAATCAAATTACTAAGA
*
15376813 GATAGTATCTTATAATATCTCATTAGGAATCAAATTACTAA-A
1 AATAGTATCTTATAATATCTCATTAGGAATCAAATTACTAAGA
*
15376855 AATTAGTATCCTATAATA
1 AA-TAGTATCTTATAATA
15376873 ATATATTATC
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
42 2 0.04
43 50 0.96
ACGTcount: A:0.44, C:0.10, G:0.09, T:0.38
Consensus pattern (43 bp):
AATAGTATCTTATAATATCTCATTAGGAATCAAATTACTAAGA
Found at i:15378875 original size:10 final size:10
Alignment explanation
Indices: 15378850--15378883 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
15378840 TAAAAAAATG
15378850 GAAATTTTTT
1 GAAATTTTTT
*
15378860 ATAAATTTTTT
1 -GAAATTTTTT
15378871 GAAATTTTTT
1 GAAATTTTTT
15378881 GAA
1 GAA
15378884 CTTAATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (10 bp):
GAAATTTTTT
Found at i:15379736 original size:23 final size:23
Alignment explanation
Indices: 15379710--15379760 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
15379700 ATGGAATTTT
**
15379710 TTAATATTTTTAAATCAAAATAA
1 TTAATATTTAAAAATCAAAATAA
* *
15379733 TTAAAATTTAAAAATTAAAATAA
1 TTAATATTTAAAAATCAAAATAA
*
15379756 ATAAT
1 TTAAT
15379761 GTAAAAGTAG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (23 bp):
TTAATATTTAAAAATCAAAATAA
Found at i:15382273 original size:24 final size:24
Alignment explanation
Indices: 15382241--15382289 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
15382231 TTCCTCCTGG
15382241 ACGCATTGATGGCCCTGCCACCCA
1 ACGCATTGATGGCCCTGCCACCCA
15382265 ACGCATTGATGGCCCTGCCACCCA
1 ACGCATTGATGGCCCTGCCACCCA
15382289 A
1 A
15382290 AAACCACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.41, G:0.20, T:0.16
Consensus pattern (24 bp):
ACGCATTGATGGCCCTGCCACCCA
Found at i:15383220 original size:31 final size:31
Alignment explanation
Indices: 15383185--15383246 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
15383175 AAATCAATGG
* * *
15383185 CTTAAATGAAGACTTTTGAATAGTTCAGTGA
1 CTTAAATGAAAACTTTTAAATAATTCAGTGA
*
15383216 CTTAAATGAAAACTTTTAAATAATTTAGTGA
1 CTTAAATGAAAACTTTTAAATAATTCAGTGA
15383247 TCAAATTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.37
Consensus pattern (31 bp):
CTTAAATGAAAACTTTTAAATAATTCAGTGA
Found at i:15393173 original size:21 final size:23
Alignment explanation
Indices: 15393147--15393207 Score: 90
Period size: 24 Copynumber: 2.7 Consensus size: 23
15393137 TCGATCCTTT
*
15393147 TTAATTACTTTA-T-TATTAAGA
1 TTAATTATTTTAGTATATTAAGA
15393168 TTAATTATTTTAGTACTATTAAGA
1 TTAATTATTTTAGTA-TATTAAGA
15393192 TTAATTATTTTAGTAT
1 TTAATTATTTTAGTAT
15393208 GAATAGTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
21 11 0.31
22 1 0.03
23 1 0.03
24 23 0.64
ACGTcount: A:0.36, C:0.03, G:0.07, T:0.54
Consensus pattern (23 bp):
TTAATTATTTTAGTATATTAAGA
Found at i:15393192 original size:24 final size:24
Alignment explanation
Indices: 15393160--15393206 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
15393150 ATTACTTTAT
15393160 TATTAAGATTAATTATTTTAGTAC
1 TATTAAGATTAATTATTTTAGTAC
15393184 TATTAAGATTAATTATTTTAGTA
1 TATTAAGATTAATTATTTTAGTA
15393207 TGAATAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.51
Consensus pattern (24 bp):
TATTAAGATTAATTATTTTAGTAC
Done.