Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 68 of 325
Found at i:21157899 original size:27 final size:28
Alignment explanation
Indices: 21157790--21157912 Score: 158
Period size: 28 Copynumber: 4.4 Consensus size: 28
21157780 GAGATTGGCG
* * * *
21157790 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
21157819 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
21157847 CCAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
21157875 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
21157902 CTGAGTGTGCG
1 CTAAGTGTGCG
21157913 GACTTAATAT
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
27 23 0.28
28 45 0.54
29 15 0.18
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:21157902 original size:55 final size:57
Alignment explanation
Indices: 21157792--21157912 Score: 156
Period size: 55 Copynumber: 2.2 Consensus size: 57
21157782 GATTGGCGCT
* * * *
21157792 AAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCACC
1 AAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCACC
* * *
21157849 AAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCAAG-TTGATTATATAGCACT
1 AAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCACC
*
21157904 GAGTGTGCG
1 AAGTGTGCG
21157913 GACTTAATAT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
55 22 0.39
56 21 0.38
57 13 0.23
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.32
Consensus pattern (57 bp):
AAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCACC
Found at i:21157926 original size:29 final size:27
Alignment explanation
Indices: 21157815--21157927 Score: 82
Period size: 28 Copynumber: 4.0 Consensus size: 27
21157805 TAAATTGTAC
** * *
21157815 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGC-AACTTAATTATAT
* ** *
21157843 AGCACCAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGC-AACTTAATTATAT
* *
21157871 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCAACTTAATTATAT
* *
21157898 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-AACTTAAT-TATAT
21157927 A
1 A
21157928 CTTTTGAATC
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
27 24 0.32
28 44 0.59
29 6 0.08
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAACTTAATTATAT
Found at i:21157926 original size:56 final size:56
Alignment explanation
Indices: 21157792--21157927 Score: 141
Period size: 56 Copynumber: 2.4 Consensus size: 56
21157782 GATTGGCGCT
* * * * * *
21157792 AAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCACC
1 AAGTGTGCGAGCTT-AATTATATAGCACTAAGTGTGCAAGTTTGATTATATAGCACC
* * *
21157849 AAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCAAG-TTGATTATATAGCACT
1 AAGTGTGCGAGCTTAATTATATAGCACTAAGTGTGCAAGTTTGATTATATAGCACC
*
21157904 GAGTGTGCG-GACTTAATATATATA
1 AAGTGTGCGAG-CTTAAT-TATATA
21157928 CTTTTGAATC
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
54 1 0.01
55 26 0.39
56 27 0.40
57 13 0.19
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (56 bp):
AAGTGTGCGAGCTTAATTATATAGCACTAAGTGTGCAAGTTTGATTATATAGCACC
Found at i:21163126 original size:55 final size:54
Alignment explanation
Indices: 21162997--21163190 Score: 230
Period size: 55 Copynumber: 3.6 Consensus size: 54
21162987 TTGGTAAGAT
* ** *
21162997 AAGGATATCATGTAAGACCATGCCAAGGTATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
21163051 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * *
21163106 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGACATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
** *
21163159 AAGGATACCACATAAGACCATGTCAAGACATG
1 AAGGATACCATGTAAGACCATGCCAAGACATG
21163191 ACAATGGTAA
Statistics
Matches: 120, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 4 0.03
53 29 0.24
54 41 0.34
55 42 0.35
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:21168071 original size:26 final size:26
Alignment explanation
Indices: 21168042--21168149 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
21168032 TGATACAAAT
*
21168042 TGATAATGGGTCAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
21168068 TGATAATGGGTTAGGTAAATTTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
21168094 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
21168120 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
21168146 TGAT
1 TGAT
21168150 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:21168959 original size:43 final size:43
Alignment explanation
Indices: 21168908--21169045 Score: 222
Period size: 43 Copynumber: 3.2 Consensus size: 43
21168898 TCGAAAAAAT
*
21168908 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCGCAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAAC
*
21168951 TCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAAC
* * * *
21168994 GCCGCTAAAGATCATAACCTTTAGCGGCACTTTTCTCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAAC
21169037 GCCGCTAAA
1 GCCGCTAAA
21169046 AATAATGATC
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 88 1.00
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.25
Consensus pattern (43 bp):
GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAAC
Found at i:21171729 original size:48 final size:48
Alignment explanation
Indices: 21171670--21171783 Score: 185
Period size: 48 Copynumber: 2.4 Consensus size: 48
21171660 CAAGATAAAT
*
21171670 AGATATATATATGTGGTAAAG-CTGAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGTC-GAATGGCTAATATGAAATATGTATG
* *
21171718 AGATATGTATATATGGTAAAGTCGAATGGCTAATATGAAATATGTATG
1 AGATATATATATGTGGTAAAGTCGAATGGCTAATATGAAATATGTATG
21171766 AGATATATATATGTGGTA
1 AGATATATATATGTGGTA
21171784 TATATGAGAT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
48 59 0.98
49 1 0.02
ACGTcount: A:0.39, C:0.04, G:0.24, T:0.34
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGTCGAATGGCTAATATGAAATATGTATG
Found at i:21171789 original size:24 final size:24
Alignment explanation
Indices: 21171762--21171807 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
21171752 ATGAAATATG
21171762 TATGAGATATATATATGTGGTATA
1 TATGAGATATATATATGTGGTATA
*
21171786 TATGAGATATGTATATGTGGTA
1 TATGAGATATATATATGTGGTA
21171808 AAGCCGAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (24 bp):
TATGAGATATATATATGTGGTATA
Found at i:21171795 original size:72 final size:72
Alignment explanation
Indices: 21171714--21171855 Score: 257
Period size: 72 Copynumber: 2.0 Consensus size: 72
21171704 GTGAAATATG
* *
21171714 TATGAGATATGTATATATGGTAAAGTCGAATGGCTAATATGAAATATGTATGAGATATATATATG
1 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
21171779 TGGTATA
66 TGGTATA
*
21171786 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
1 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
21171851 TGGTA
66 TGGTA
21171856 AATCTGAATG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.38, C:0.04, G:0.23, T:0.35
Consensus pattern (72 bp):
TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
TGGTATA
Found at i:21171818 original size:120 final size:120
Alignment explanation
Indices: 21171670--21171903 Score: 362
Period size: 120 Copynumber: 1.9 Consensus size: 120
21171660 CAAGATAAAT
* ** *
21171670 AGATATATATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGTATATATGGT
1 AGATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATATGGT
*
21171735 AAAGTC-GAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTATATATG
66 AAA-TCTGAATGGCTAATATGAAATATGAATGAGATATATATATGTGGTATATATG
* *
21171790 AGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGT
1 AGATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATATGGT
* * *
21171855 AAATCTGAATGGCTAATGTGAAATATGAATGAGATATGTATATTTGGTA
66 AAATCTGAATGGCTAATATGAAATATGAATGAGATATATATATGTGGTA
21171904 AATCCGGATG
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
119 2 0.02
120 101 0.98
ACGTcount: A:0.38, C:0.04, G:0.24, T:0.34
Consensus pattern (120 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATATGGT
AAATCTGAATGGCTAATATGAAATATGAATGAGATATATATATGTGGTATATATG
Found at i:21171838 original size:48 final size:48
Alignment explanation
Indices: 21171786--21171937 Score: 223
Period size: 48 Copynumber: 3.2 Consensus size: 48
21171776 ATGTGGTATA
* **
21171786 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATG
1 TATGAGATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATG
* *
21171834 TATGAGATATATATATGTGGTAAATCTGAATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATG
* * *
21171882 AATGAGATATGTATATTTGGTAAATCCGGATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATG
*
21171930 TAGGAGAT
1 TATGAGAT
21171938 GTGTGTATAT
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
TATGAGATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATG
Found at i:21172128 original size:37 final size:37
Alignment explanation
Indices: 21172078--21172180 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
21172068 GGAAATATAT
21172078 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
21172115 TCCGGGTAAGACCCGATGACTACGTATGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
21172152 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
21172181 GGACTATTCA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:21173529 original size:40 final size:40
Alignment explanation
Indices: 21173469--21173810 Score: 451
Period size: 40 Copynumber: 8.9 Consensus size: 40
21173459 GTTATATATA
**
21173469 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATG
21173509 TATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATG
*
21173549 TATCCGGGCTAAGTTTCGAAGAGCATTCGGGCTAGTGATG
1 TATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATG
21173589 TATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATG
* * *
21173629 TATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATA
1 TATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATG
*
21173669 TATCCGGGCTAAGTTCCGAAGAGCA-T--T-C----G-TG
1 TATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATG
*
21173700 ---CCGGGCTAAGTTCT-GAAGAGCATTCGTGCTAGTGATA
1 TATCCGGGCTAAGTT-TCGAAGAGCATTCGTGCTAGTGATG
* *
21173737 TATCTGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATA
1 TATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATG
*** *
21173777 TATCCGGGCTAAACCTCGAAG-GCATTCATGCTAG
1 TATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAG
21173811 AGTTATGAGG
Statistics
Matches: 271, Mismatches: 17, Indels: 29
0.85 0.05 0.09
Matches are distributed among these distances:
28 20 0.07
29 1 0.00
31 2 0.01
32 2 0.01
36 2 0.01
37 2 0.01
39 14 0.05
40 228 0.84
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATG
Found at i:21173712 original size:28 final size:28
Alignment explanation
Indices: 21173672--21173728 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
21173662 AGTGATATAT
21173672 CCGGGCTAAGTTCCGAAGAGCATTCGTG
1 CCGGGCTAAGTTCCGAAGAGCATTCGTG
*
21173700 CCGGGCTAAGTTCTGAAGAGCATTCGTG
1 CCGGGCTAAGTTCCGAAGAGCATTCGTG
21173728 C
1 C
21173729 TAGTGATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.25, G:0.32, T:0.23
Consensus pattern (28 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTG
Found at i:21173746 original size:68 final size:68
Alignment explanation
Indices: 21173632--21173768 Score: 238
Period size: 68 Copynumber: 2.0 Consensus size: 68
21173622 AGTGATGTAT
21173632 CCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTC
1 CCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTC
21173697 GTG
66 GTG
** * *
21173700 CCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATATATCTGGGCTAAGTTTCGAAGAGCATTC
1 CCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTC
21173765 GTG
66 GTG
21173768 C
1 C
21173769 TAGTGATATA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (68 bp):
CCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTC
GTG
Found at i:21173781 original size:108 final size:108
Alignment explanation
Indices: 21173592--21173788 Score: 342
Period size: 108 Copynumber: 1.8 Consensus size: 108
21173582 AGTGATGTAT
*
21173592 CCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCAAAGAGCATTC
1 CCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCAAAGAGCATTC
21173657 GTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTG
66 GTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTG
* * *
21173700 CCGGGCTAAG-TTCTGAAGAGCATTCGTGCTAGTGATATATCTGGGCTAAGTTTCGAAGAGCATT
1 CCGGGCTAAGTTTC-GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCAAAGAGCATT
21173764 CGTGCTAGTGATATATCCGGGCTAA
65 CGTGCTAGTGATATATCCGGGCTAA
21173789 ACCTCGAAGG
Statistics
Matches: 84, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
107 3 0.04
108 81 0.96
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (108 bp):
CCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCAAAGAGCATTC
GTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTG
Found at i:21177316 original size:48 final size:48
Alignment explanation
Indices: 21177245--21177406 Score: 270
Period size: 48 Copynumber: 3.4 Consensus size: 48
21177235 CAAGATAAAT
*
21177245 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATATATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
21177293 AGATATGTATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATATATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
21177341 AGATATGTATATATGGTAAAGCCGAATGGCTAATATGAATTATGTATG
1 AGATATATATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
21177389 AGATATATATATGTGGTA
1 AGATATATATATATGGTA
21177407 TATATGAGAT
Statistics
Matches: 108, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 108 1.00
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.33
Consensus pattern (48 bp):
AGATATATATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:21177412 original size:24 final size:24
Alignment explanation
Indices: 21177385--21177430 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
21177375 ATGAATTATG
21177385 TATGAGATATATATATGTGGTATA
1 TATGAGATATATATATGTGGTATA
*
21177409 TATGAGATATGTATATGTGGTA
1 TATGAGATATATATATGTGGTA
21177431 AAGCCGAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (24 bp):
TATGAGATATATATATGTGGTATA
Found at i:21177418 original size:72 final size:72
Alignment explanation
Indices: 21177337--21177478 Score: 257
Period size: 72 Copynumber: 2.0 Consensus size: 72
21177327 GTGAAATATG
* *
21177337 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAATATGAATTATGTATGAGATATATATATG
1 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
21177402 TGGTATA
66 TGGTATA
*
21177409 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
1 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
21177474 TGGTA
66 TGGTA
21177479 AATCCGAATG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.35
Consensus pattern (72 bp):
TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
TGGTATA
Found at i:21177454 original size:168 final size:168
Alignment explanation
Indices: 21177245--21177560 Score: 533
Period size: 168 Copynumber: 1.9 Consensus size: 168
21177235 CAAGATAAAT
** *
21177245 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATGGT
1 AGATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATATGGT
21177310 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATGGTAAAGCCGAATGGCTAAT
66 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATGGTAAAGCCGAATGGCTAAT
* *
21177375 ATGAATTATGTATGAGATATATATATGTGGTATATATG
131 ATGAAATATGTAGGAGATATATATATGTGGTATATATG
* *
21177413 AGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGT
1 AGATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATATGGT
* * *
21177478 AAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATTTGGTAAAGCCGGATGGCTAAT
66 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATGGTAAAGCCGAATGGCTAAT
*
21177543 GTGAAATATGTAGGAGAT
131 ATGAAATATGTAGGAGAT
21177561 GTGTGTATAT
Statistics
Matches: 137, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
168 137 1.00
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (168 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATATGGT
AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATGGTAAAGCCGAATGGCTAAT
ATGAAATATGTAGGAGATATATATATGTGGTATATATG
Found at i:21177461 original size:48 final size:48
Alignment explanation
Indices: 21177409--21177560 Score: 241
Period size: 48 Copynumber: 3.2 Consensus size: 48
21177399 ATGTGGTATA
**
21177409 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* *
21177457 TATGAGATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* *
21177505 TATGAGATATGTATATTTGGTAAAGCCGGATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
21177553 TAGGAGAT
1 TATGAGAT
21177561 GTGTGTATAT
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 95 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.32
Consensus pattern (48 bp):
TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
Found at i:21177466 original size:120 final size:120
Alignment explanation
Indices: 21177289--21177526 Score: 386
Period size: 120 Copynumber: 2.0 Consensus size: 120
21177279 GTGAAATATG
** *
21177289 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATA
1 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATA
*
21177354 TGGTAAAGCCGAATGGCTAATATGAATTATGTATGAGATATATATATGTGGTATA
66 TGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTATA
* *
21177409 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
1 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATA
* * * *
21177474 TGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATTTGGTA
66 TGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTA
21177527 AAGCCGGATG
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
120 108 1.00
ACGTcount: A:0.37, C:0.05, G:0.24, T:0.34
Consensus pattern (120 bp):
TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATA
TGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTATA
Found at i:21177751 original size:37 final size:37
Alignment explanation
Indices: 21177701--21177803 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
21177691 AGAAATATAT
21177701 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
21177738 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
21177775 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
21177804 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:21179932 original size:15 final size:16
Alignment explanation
Indices: 21179906--21179936 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
21179896 TGTTTCTTGC
21179906 TTTTAGATCATATATA
1 TTTTAGATCATATATA
21179922 TTTTA-ATCATATATA
1 TTTTAGATCATATATA
21179937 AGATAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (16 bp):
TTTTAGATCATATATA
Found at i:21182862 original size:7 final size:7
Alignment explanation
Indices: 21182850--21182874 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
21182840 ATATGGACTA
21182850 AAATATT
1 AAATATT
21182857 AAATATT
1 AAATATT
21182864 AAATATT
1 AAATATT
21182871 AAAT
1 AAAT
21182875 TTTTAAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
AAATATT
Found at i:21182892 original size:7 final size:7
Alignment explanation
Indices: 21182882--21182950 Score: 111
Period size: 7 Copynumber: 9.9 Consensus size: 7
21182872 AATTTTTAAG
21182882 TTTTTTA
1 TTTTTTA
21182889 TTTTTTA
1 TTTTTTA
21182896 TTTTTTA
1 TTTTTTA
21182903 TTTTTTA
1 TTTTTTA
21182910 TTTTTTA
1 TTTTTTA
21182917 TTTTTTA
1 TTTTTTA
21182924 TTTTTTA
1 TTTTTTA
*
21182931 TTTTTAA
1 TTTTTTA
* *
21182938 ATTTTAA
1 TTTTTTA
21182945 TTTTTT
1 TTTTTT
21182951 TTGAAGATTT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 58 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTTA
Found at i:21182906 original size:21 final size:21
Alignment explanation
Indices: 21182873--21182950 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
21182863 TAAATATTAA
21182873 ATTTTTAAGTTTTTTATTTTTT
1 ATTTTTAA-TTTTTTATTTTTT
*
21182895 ATTTTTTATTTTTTATTTTTT
1 ATTTTTAATTTTTTATTTTTT
* *
21182916 ATTTTTTATTTTTTATTTTTA
1 ATTTTTAATTTTTTATTTTTT
*
21182937 AATTTTAATTTTTT
1 ATTTTTAATTTTTT
21182951 TTGAAGATTT
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
21 45 0.87
22 7 0.13
ACGTcount: A:0.19, C:0.00, G:0.01, T:0.79
Consensus pattern (21 bp):
ATTTTTAATTTTTTATTTTTT
Found at i:21184283 original size:42 final size:42
Alignment explanation
Indices: 21184176--21184362 Score: 283
Period size: 41 Copynumber: 4.5 Consensus size: 42
21184166 GACTATATGA
* *
21184176 CTTTTAGCGGCATTTTACCAAAAGCGCAGCTAATGCTCTGGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
21184218 C-TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
21184259 CTTTTAACGGCGTTTTATCAAAAGCGCCGCTAATGCTCTGGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
21184301 C-TTTAGCGGAGTTTTACCAAAAGCGCCACTAATGCTCT-GT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
21184341 -TTTTAGCGGCGTTTTAACAAAA
1 CTTTTAGCGGCGTTTTACCAAAA
21184363 AACGCCGCAA
Statistics
Matches: 133, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
40 21 0.16
41 72 0.54
42 40 0.30
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.32
Consensus pattern (42 bp):
CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:21184315 original size:83 final size:82
Alignment explanation
Indices: 21184176--21184362 Score: 295
Period size: 83 Copynumber: 2.3 Consensus size: 82
21184166 GACTATATGA
* * *
21184176 CTTTTAGCGGCATTTTACCAAAAGCGCAGCTAATGCTCTGGTCTTTAGCGGCGTTTTACCAAAAG
1 CTTTTAGCGGCGTTTTAACAAAAGCGCAGCTAATGCTCTGGTCTTTAGCGGAGTTTTACCAAAAG
*
21184241 CGCCGCTAATGCTCTGGT
66 CGCCACTAATGCTCT-GT
* * *
21184259 CTTTTAACGGCGTTTTATCAAAAGCGCCGCTAATGCTCTGGTCTTTAGCGGAGTTTTACCAAAAG
1 CTTTTAGCGGCGTTTTAACAAAAGCGCAGCTAATGCTCTGGTCTTTAGCGGAGTTTTACCAAAAG
21184324 CGCCACTAATGCTCTGT
66 CGCCACTAATGCTCTGT
21184341 -TTTTAGCGGCGTTTTAACAAAA
1 CTTTTAGCGGCGTTTTAACAAAA
21184363 AACGCCGCAA
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
81 20 0.21
82 2 0.02
83 74 0.77
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.32
Consensus pattern (82 bp):
CTTTTAGCGGCGTTTTAACAAAAGCGCAGCTAATGCTCTGGTCTTTAGCGGAGTTTTACCAAAAG
CGCCACTAATGCTCTGT
Found at i:21185382 original size:26 final size:26
Alignment explanation
Indices: 21185316--21185391 Score: 98
Period size: 26 Copynumber: 2.8 Consensus size: 26
21185306 AAAAGCAGCT
* * *
21185316 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTATTATACCCCTA-G-GTGCA
*
21185344 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTATTATACCCCTAGGTGCA
21185370 AAATTACTATTATACCCCTAGG
1 AAATTACTATTATACCCCTAGG
21185392 GTTAATTTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 24 0.56
27 1 0.02
28 18 0.42
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.32
Consensus pattern (26 bp):
AAATTACTATTATACCCCTAGGTGCA
Found at i:21185578 original size:27 final size:27
Alignment explanation
Indices: 21185496--21185599 Score: 106
Period size: 27 Copynumber: 3.9 Consensus size: 27
21185486 GGAAGCGTCC
* * *
21185496 TGGTGGCTATGCCAGAATTATCTG-ATC
1 TGGTGGCTCTGCCACAA-TATCTGTATT
*
21185523 TAGTGGCTCTGCCACATATATCTGT-TT
1 TGGTGGCTCTGCCACA-ATATCTGTATT
21185550 TGGTGGCTCTGCCACAATATCTGTATT
1 TGGTGGCTCTGCCACAATATCTGTATT
* *
21185577 TGGTGACATC-GTCACAATATCTG
1 TGGTGGC-TCTGCCACAATATCTG
21185600 GCAGCCTCGC
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
26 8 0.12
27 55 0.83
28 3 0.05
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATATCTGTATT
Found at i:21191718 original size:26 final size:26
Alignment explanation
Indices: 21191689--21191796 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
21191679 TGATACAAAT
21191689 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
21191715 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
21191741 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
21191767 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
21191793 TGAT
1 TGAT
21191797 GGGAATTTCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:21193460 original size:27 final size:27
Alignment explanation
Indices: 21193419--21193532 Score: 153
Period size: 27 Copynumber: 4.2 Consensus size: 27
21193409 AGGAAGCGTC
*
21193419 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
21193446 CTTGTGGCTTTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
21193472 CCTGGTGGCTCTGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
21193500 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
21193527 CTGGTG
1 CTGGTG
21193533 ACTTCGTCAC
Statistics
Matches: 78, Mismatches: 4, Indels: 10
0.85 0.04 0.11
Matches are distributed among these distances:
26 9 0.12
27 66 0.85
28 3 0.04
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:21193532 original size:54 final size:54
Alignment explanation
Indices: 21193416--21193524 Score: 184
Period size: 54 Copynumber: 2.0 Consensus size: 54
21193406 TGGAGGAAGC
* *
21193416 GTCCTGGTGGCTATGCCACAATTATCTGATCTTGTGGCTTTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
21193470 GTCCTGGTGGCTCTGCCACAATTATCTGATCTGGTGGCTCTGCCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
21193523 GT
1 GT
21193525 ATCTGGTGAC
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
53 8 0.15
54 44 0.85
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:21193543 original size:27 final size:26
Alignment explanation
Indices: 21193419--21193550 Score: 124
Period size: 27 Copynumber: 4.9 Consensus size: 26
21193409 AGGAAGCGTC
* *
21193419 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGAT
* * *
21193446 CTTGTGGCTTTGCCACATATATCTG-T
1 CTGGTGACTCTGCCACA-ATATCTGAT
*
21193472 CCTGGTGGCTCTGCCACAATTATCTGAT
1 -CTGGTGACTCTGCCACAA-TATCTGAT
*
21193500 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTG-AT
*
21193527 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
21193551 GCAGCCTCGC
Statistics
Matches: 93, Mismatches: 6, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
26 9 0.10
27 82 0.88
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGAT
Found at i:21198418 original size:10 final size:10
Alignment explanation
Indices: 21198403--21198452 Score: 52
Period size: 9 Copynumber: 5.2 Consensus size: 10
21198393 CTCATGTGTA
21198403 ATTTTATAAT
1 ATTTTATAAT
21198413 ATTTTA-AATT
1 ATTTTATAA-T
21198423 ATTTTATAA-
1 ATTTTATAAT
*
21198432 ATTTAATAAT
1 ATTTTATAAT
*
21198442 -TTTTATTAT
1 ATTTTATAAT
21198451 AT
1 AT
21198453 AAGTTTTGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
9 17 0.52
10 14 0.42
11 2 0.06
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
ATTTTATAAT
Found at i:21198442 original size:20 final size:20
Alignment explanation
Indices: 21198403--21198442 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
21198393 CTCATGTGTA
*
21198403 ATTTTATAATATTTTAAATT
1 ATTTTATAATATTTAAAATT
21198423 ATTTTATAA-ATTTAATAATT
1 ATTTTATAATATTTAA-AATT
21198443 TTTATTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTTTATAATATTTAAAATT
Found at i:21205210 original size:86 final size:86
Alignment explanation
Indices: 21205061--21205231 Score: 306
Period size: 86 Copynumber: 2.0 Consensus size: 86
21205051 TTTATAACAG
* *
21205061 TAAATGTCTTTCTCCGTTGCTTTCAAAATTTAAAACACAATAACAAAAACATTACCTTGTGAATC
1 TAAATATCTTTCTCCGTTGCTTTCAAAATTTAAAACACAATAACAAAAACATTACCTTATGAATC
21205126 TGAATCTCTCCCTAAAATCAA
66 TGAATCTCTCCCTAAAATCAA
*
21205147 TAAATATCTTTCTCCGTTGCTTTCAAAATTTAAAACAGAATAACAAAAACATTACCTTATGAATC
1 TAAATATCTTTCTCCGTTGCTTTCAAAATTTAAAACACAATAACAAAAACATTACCTTATGAATC
*
21205212 TGAATCTCTCCCTCAAATCA
66 TGAATCTCTCCCTAAAATCA
21205232 GCCAACTGTT
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 81 1.00
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (86 bp):
TAAATATCTTTCTCCGTTGCTTTCAAAATTTAAAACACAATAACAAAAACATTACCTTATGAATC
TGAATCTCTCCCTAAAATCAA
Found at i:21209336 original size:27 final size:26
Alignment explanation
Indices: 21209301--21209411 Score: 141
Period size: 27 Copynumber: 4.1 Consensus size: 26
21209291 AGCATGGCTG
* *
21209301 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
21209327 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
21209355 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
21209382 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
21209409 CCA
1 CCA
21209412 TGACGCTTCC
Statistics
Matches: 75, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.71
28 16 0.21
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:21209365 original size:54 final size:54
Alignment explanation
Indices: 21209301--21209411 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 54
21209291 AGCATGGCTG
*
21209301 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAACCA
* * * *
21209355 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
21209409 CCA
1 CCA
21209412 TGACGCTTCC
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
Found at i:21210846 original size:24 final size:24
Alignment explanation
Indices: 21210819--21210865 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
21210809 CTAGATTTCC
**
21210819 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
21210843 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
21210866 CTCCTAACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:21217156 original size:27 final size:26
Alignment explanation
Indices: 21217121--21217214 Score: 116
Period size: 27 Copynumber: 3.5 Consensus size: 26
21217111 AGCATGGCTG
* *
21217121 CCAGAACAGATAACGTGACAGAGTCA
1 CCAGAACAGATAACGTGGCAGAGCCA
*
21217147 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAA-CGTGGCAGAGCCA
*
21217175 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ACGTGGCAGAGCCA
*
21217202 CCAGATCAGATAA
1 CCAGAACAGATAA
21217215 TTATGGCATA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
26 6 0.10
27 37 0.63
28 16 0.27
ACGTcount: A:0.40, C:0.23, G:0.22, T:0.14
Consensus pattern (26 bp):
CCAGAACAGATAACGTGGCAGAGCCA
Found at i:21217221 original size:27 final size:27
Alignment explanation
Indices: 21217121--21217232 Score: 102
Period size: 27 Copynumber: 4.1 Consensus size: 27
21217111 AGCATGGCTG
* * * *
21217121 CCAGAACAGATAA-CGTGACAGAGTCA
1 CCAGATCAGATAATTGTGGCAGAGCCA
* *
21217147 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAT-CAGATAATTGTGGCAGAGCCA
*
21217175 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGATCAGATAAT-TGTGGCAGAGCCA
* * *
21217202 CCAGATCAGATAATTATGGCATAGACA
1 CCAGATCAGATAATTGTGGCAGAGCCA
21217229 CCAG
1 CCAG
21217233 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 7 0.10
27 47 0.66
28 17 0.24
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.15
Consensus pattern (27 bp):
CCAGATCAGATAATTGTGGCAGAGCCA
Found at i:21218676 original size:24 final size:24
Alignment explanation
Indices: 21218649--21218695 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
21218639 CTAGATTTCC
*
21218649 TCCCTTATCTACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
21218673 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
21218696 CTCCTGACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.38, G:0.00, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:21221359 original size:40 final size:40
Alignment explanation
Indices: 21221304--21221548 Score: 300
Period size: 40 Copynumber: 6.2 Consensus size: 40
21221294 CGGATGATAA
* * * *
21221304 CGAAGGCATTCGTGCTAGTGACTA-ATTCCGGGCTAAGTGC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
* * *
21221344 CGAAGGTATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
* *
21221384 CAAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
21221424 CGAAGGCATTTGTGCGAGTTTCTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
21221464 CGAAGGCATTGGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * * *
21221504 CGAAGGCATTTGAGCGAG-TAGCTACATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
21221543 CGAAGG
1 CGAAGG
21221549 TACTTGGTTT
Statistics
Matches: 185, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 16 0.09
40 168 0.91
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:21226570 original size:115 final size:114
Alignment explanation
Indices: 21226409--21226618 Score: 273
Period size: 115 Copynumber: 1.8 Consensus size: 114
21226399 GTGACTAATT
* * * * *
21226409 CGGGCTAAGTGCGAAGGTATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCAAAGGCA-TTGTG
1 CGGGCTAAGTCCGAAGGCATTGGTGCGAGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTTGAG
*
21226473 CGAGTTA-CTATATCCGACTAAGATCCGAAGGCATTTGTGCGGTTTATATC
66 CGAG-TAGCTACATCCGACTAA-ATCCGAAGGCATTTGTGCGGTTTATATC
* *
21226523 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGT-CCGAAGGCATTGGTGCGAGTGACTAAT-TCCGGGCTAAGTCCCAAAGGCATTTG
**
21226587 AGCGAGTAGCTACATCCGGTTAAATCCGAAGG
64 AGCGAGTAGCTACATCCGACTAAATCCGAAGG
21226619 TACTTGGTTT
Statistics
Matches: 82, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
114 12 0.15
115 51 0.62
116 19 0.23
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (114 bp):
CGGGCTAAGTCCGAAGGCATTGGTGCGAGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTTGAG
CGAGTAGCTACATCCGACTAAATCCGAAGGCATTTGTGCGGTTTATATC
Found at i:21226605 original size:40 final size:40
Alignment explanation
Indices: 21226383--21226593 Score: 226
Period size: 40 Copynumber: 5.5 Consensus size: 40
21226373 GGATGACTAA
* * * * *
21226383 CGAAGGCA-TCGTGCTAGTGACTA-ATTCGGGCTAAGT-G
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
21226420 CGAAGGTATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
* *
21226460 CAAAGGCA-TTGTGCGAGTTACTATATCC-GACTAAGAT-C
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAG-TCC
21226498 CGAAGGCATTTGTGCG-GTT--TATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
21226535 CGAAGGCATTGGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
21226575 CGAAGGCATTTGAGCGAGT
1 CGAAGGCATTTGTGCGAGT
21226594 AGCTACATCC
Statistics
Matches: 149, Mismatches: 14, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
36 8 0.05
37 29 0.19
38 35 0.23
39 35 0.23
40 42 0.28
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:21227357 original size:27 final size:26
Alignment explanation
Indices: 21227322--21227415 Score: 116
Period size: 27 Copynumber: 3.5 Consensus size: 26
21227312 AGCATGGCTG
* *
21227322 CCAGAACAGATAACGTGACAGAGTCA
1 CCAGAACAGATAACGTGGCAGAGCCA
*
21227348 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAA-CGTGGCAGAGCCA
*
21227376 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ACGTGGCAGAGCCA
*
21227403 CCAGATCAGATAA
1 CCAGAACAGATAA
21227416 TTATGGCATA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
26 6 0.10
27 37 0.63
28 16 0.27
ACGTcount: A:0.40, C:0.23, G:0.22, T:0.14
Consensus pattern (26 bp):
CCAGAACAGATAACGTGGCAGAGCCA
Found at i:21227422 original size:27 final size:27
Alignment explanation
Indices: 21227322--21227433 Score: 102
Period size: 27 Copynumber: 4.1 Consensus size: 27
21227312 AGCATGGCTG
* * * *
21227322 CCAGAACAGATAA-CGTGACAGAGTCA
1 CCAGATCAGATAATTGTGGCAGAGCCA
* *
21227348 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAT-CAGATAATTGTGGCAGAGCCA
*
21227376 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGATCAGATAAT-TGTGGCAGAGCCA
* * *
21227403 CCAGATCAGATAATTATGGCATAGACA
1 CCAGATCAGATAATTGTGGCAGAGCCA
21227430 CCAG
1 CCAG
21227434 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 7 0.10
27 47 0.66
28 17 0.24
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.15
Consensus pattern (27 bp):
CCAGATCAGATAATTGTGGCAGAGCCA
Found at i:21228871 original size:24 final size:24
Alignment explanation
Indices: 21228844--21228890 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
21228834 CTAGATTTCC
*
21228844 TCCCTTATCTACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
21228868 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
21228891 CTCCTGACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.38, G:0.00, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:21231587 original size:40 final size:40
Alignment explanation
Indices: 21231495--21231737 Score: 336
Period size: 40 Copynumber: 6.2 Consensus size: 40
21231485 CGGATGATAA
* *
21231495 CGAAGGCA-TTGTGCTAGTGACTA-ATTCCGGGCTAAGT-C
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
* *
21231533 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
21231573 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
21231613 CGAAGGCATTTGTACGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
21231653 CAAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
21231693 CGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
21231732 CGAAGG
1 CGAAGG
21231738 TACTTGGTTT
Statistics
Matches: 192, Mismatches: 9, Indels: 7
0.92 0.04 0.03
Matches are distributed among these distances:
38 8 0.04
39 45 0.23
40 138 0.72
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:21239854 original size:40 final size:40
Alignment explanation
Indices: 21239799--21240001 Score: 261
Period size: 40 Copynumber: 5.1 Consensus size: 40
21239789 GATGATAACA
* *
21239799 AAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTGCCG
1 AAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCCCG
*
21239839 AAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCCCG
*
21239879 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCG
* * *
21239919 AAGGCATTGGTACGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCG
* * *
21239959 AAGGCATTTGAGCGAGT-AGCTATATCC-GGTTAAATCCCG
1 AAGGCATTTGTGCGAGTGA-CTATATCCGGGCTAAGTCCCG
21239998 AAGG
1 AAGG
21240002 TACTTGGTTT
Statistics
Matches: 151, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 15 0.10
40 135 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCG
Found at i:21242413 original size:32 final size:32
Alignment explanation
Indices: 21242372--21242439 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
21242362 TACTCAATTG
*
21242372 AATTTCCATACATACATGTACCATCTCGTACC
1 AATTTCCATACATACATGTACCATCTCATACC
21242404 AATTTCCATACATACATGTACCATCTCATACC
1 AATTTCCATACATACATGTACCATCTCATACC
21242436 AATT
1 AATT
21242440 CTCGTACTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.34, C:0.29, G:0.04, T:0.32
Consensus pattern (32 bp):
AATTTCCATACATACATGTACCATCTCATACC
Found at i:21242532 original size:28 final size:28
Alignment explanation
Indices: 21242501--21242588 Score: 81
Period size: 28 Copynumber: 3.1 Consensus size: 28
21242491 ACAATAGATT
*
21242501 CCATACCCGATACCTCGCACACTAAGTG
1 CCATACCCGATACTTCGCACACTAAGTG
** **
21242529 CCATTA-TGGATGTTTCGCACACTAAGTG
1 CCA-TACCCGATACTTCGCACACTAAGTG
* *
21242557 CCAT-CCTCGTTACTTCACACACTAAGTG
1 CCATACC-CGATACTTCGCACACTAAGTG
21242585 CCAT
1 CCAT
21242589 TCAGGGATGT
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
27 1 0.02
28 43 0.93
29 2 0.04
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (28 bp):
CCATACCCGATACTTCGCACACTAAGTG
Found at i:21242628 original size:57 final size:55
Alignment explanation
Indices: 21242501--21242644 Score: 171
Period size: 57 Copynumber: 2.5 Consensus size: 55
21242491 ACAATAGATT
* * * *
21242501 CCATACCCGATACCTCGCACACTAAGTGCCATTATGGATGTTTCGCACACTAAGTG
1 CCAT-CCCGATACTTCGCACACTAAGTGCCATTAGGGATGTATCACACACTAAGTG
* * *
21242557 CCATCCTCGTTACTTCACACACTAAGTGCCATTCAGGGATGTATCACATACTAAGTG
1 CCATCC-CGATACTTCGCACACTAAGTGCCATT-AGGGATGTATCACACACTAAGTG
**
21242614 CCATCCCGGATACTTCGCACGTTAAGTGCCA
1 CCATCCC-GATACTTCGCACACTAAGTGCCA
21242645 CATATAAATA
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
55 2 0.03
56 28 0.38
57 44 0.59
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (55 bp):
CCATCCCGATACTTCGCACACTAAGTGCCATTAGGGATGTATCACACACTAAGTG
Found at i:21248218 original size:49 final size:49
Alignment explanation
Indices: 21248146--21248333 Score: 225
Period size: 49 Copynumber: 3.8 Consensus size: 49
21248136 TGAGGTCACG
* *
21248146 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
* * * * *
21248195 TGTGTAGTACTAAATGCAGGCTACTATGCGTACCCGAAAACTGTGATC-AA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-T-TGGTCGCA
* * * ** *
21248245 GTGTGTAGTAGTAAGTGTAGGCTACTACGTATACCAGATTATTGGTCGCA
1 -TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
21248295 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
21248334 GCTTCGGCTA
Statistics
Matches: 112, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
49 73 0.65
50 4 0.04
51 35 0.31
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
Found at i:21248318 original size:100 final size:100
Alignment explanation
Indices: 21248145--21248328 Score: 305
Period size: 100 Copynumber: 1.8 Consensus size: 100
21248135 GTGAGGTCAC
* * *
21248145 GTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAAT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCGCATGTGTAGTACTAAAT
21248210 GCAGGCTACTATGCGTACCCGAAAACTGTGATCAA
66 GCAGGCTACTATGCGTACCCGAAAACTGTGATCAA
* * * *
21248245 GTGTGTAGTAGTAAGTGTAGGCTACTACGTATACCAGATTATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCGCATGTGTAGTACTAAAT
21248310 GCAGGCTACTATGCGTACC
66 GCAGGCTACTATGCGTACC
21248329 AGATAGCTTC
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 77 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCGCATGTGTAGTACTAAAT
GCAGGCTACTATGCGTACCCGAAAACTGTGATCAA
Found at i:21254177 original size:51 final size:49
Alignment explanation
Indices: 21254047--21254241 Score: 210
Period size: 49 Copynumber: 3.9 Consensus size: 49
21254037 ACTATTGTGA
* * *
21254047 GGTCATGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACAAGATAATT
1 GGTCATATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** * * * *
21254096 GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGTGTACCCGAAAACTGT
1 GGTCATATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-T
* * * *
21254147 GATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTATT
1 GGTCATATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
21254196 GGTAAAATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 GGTCATATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
21254242 GCTTCGGCTA
Statistics
Matches: 116, Mismatches: 28, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
49 76 0.66
50 2 0.02
51 38 0.33
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (49 bp):
GGTCATATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:21254224 original size:100 final size:100
Alignment explanation
Indices: 21254049--21254236 Score: 286
Period size: 100 Copynumber: 1.9 Consensus size: 100
21254039 TATTGTGAGG
* ***
21254049 TCATGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACAAGATAATTGGTCGCATGTGTAGTACT
1 TCATGTGTGTAGCACTAAGTGCAGGCTACTACGTATACAAGATAATTGGTAAAATGTGTAGTACT
*
21254114 AAATGCAGGCTACTATGTGTACCCGAAAACTGTGA
66 AAATGCAGGCTACTATGCGTACCCGAAAACTGTGA
* * *
21254149 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTATTGGTAAAATGTGTAGTACT
1 TCATGTGTGTAGCACTAAGTGCAGGCTACTACGTATACAAGATAATTGGTAAAATGTGTAGTACT
* *
21254214 AAGTGTAGGCTACTATGCGTACC
66 AAATGCAGGCTACTATGCGTACC
21254237 AGATAGCTTC
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 78 1.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (100 bp):
TCATGTGTGTAGCACTAAGTGCAGGCTACTACGTATACAAGATAATTGGTAAAATGTGTAGTACT
AAATGCAGGCTACTATGCGTACCCGAAAACTGTGA
Found at i:21273734 original size:22 final size:23
Alignment explanation
Indices: 21273706--21273754 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
21273696 GCCATCCTTA
21273706 TTTTTATTTCAA-T-TTAATTTT
1 TTTTTATTTCAATTATTAATTTT
*
21273727 GTTTTTATTTTAATTATTAATTTT
1 -TTTTTATTTCAATTATTAATTTT
21273751 TTTT
1 TTTT
21273755 ACTTACTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 11 0.46
23 5 0.21
24 8 0.33
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (23 bp):
TTTTTATTTCAATTATTAATTTT
Found at i:21277166 original size:30 final size:32
Alignment explanation
Indices: 21277107--21277164 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 32
21277097 GACCACACTC
*
21277107 CTCTTTCCTTTTTCTTTTTTCCCTTCCCCATT
1 CTCTTTCCTTTTTCTTTTCTCCCTTCCCCATT
21277139 CTCTTT-C-TTTTCTTTTCT-CCTTCCCC
1 CTCTTTCCTTTTTCTTTTCTCCCTTCCCC
21277165 CACCCATTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 8 0.32
30 10 0.40
31 1 0.04
32 6 0.24
ACGTcount: A:0.02, C:0.40, G:0.00, T:0.59
Consensus pattern (32 bp):
CTCTTTCCTTTTTCTTTTCTCCCTTCCCCATT
Found at i:21282510 original size:14 final size:14
Alignment explanation
Indices: 21282493--21282541 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
21282483 TTGTATATGT
*
21282493 GGTTTAGGGTGT-A
1 GGTTTAGGGTCTCA
21282506 GGGTTTAGGGTCTCA
1 -GGTTTAGGGTCTCA
*
21282521 GGTTTAGGGTTTCA
1 GGTTTAGGGTCTCA
21282535 GGTTTAG
1 GGTTTAG
21282542 AGTATAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
14 31 0.97
15 1 0.03
ACGTcount: A:0.14, C:0.06, G:0.41, T:0.39
Consensus pattern (14 bp):
GGTTTAGGGTCTCA
Found at i:21282586 original size:15 final size:15
Alignment explanation
Indices: 21282566--21282597 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
21282556 TTTAATTTAG
21282566 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
21282581 AAGATAAATATATAT
1 AAGATAAATATAAAT
21282596 AA
1 AA
21282598 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:21282625 original size:37 final size:39
Alignment explanation
Indices: 21282572--21282654 Score: 134
Period size: 39 Copynumber: 2.2 Consensus size: 39
21282562 TTAGAAGATA
*
21282572 AATATAAATAAGAT-AA-ATATATATAAATTATTATTTT
1 AATATAAATAAAATAAATATATATATAAATTATTATTTT
21282609 AATATAAATAAAATAAATATATATATAAATTATTATTTT
1 AATATAAATAAAATAAATATATATATAAATTATTATTTT
*
21282648 AAAATAA
1 AATATAA
21282655 TATATATCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
37 13 0.31
38 2 0.05
39 27 0.64
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (39 bp):
AATATAAATAAAATAAATATATATATAAATTATTATTTT
Found at i:21284641 original size:39 final size:39
Alignment explanation
Indices: 21284583--21284665 Score: 141
Period size: 39 Copynumber: 2.2 Consensus size: 39
21284573 TCCATATATG
*
21284583 ACTG-TCTTAAATTTGTTATTTTGCATGATTATTTGAGA
1 ACTGCTCTTAAATTTGTTATTCTGCATGATTATTTGAGA
21284621 ACTGCTCTTAAATTTGTTATTCTGCATGATTATTTGAGA
1 ACTGCTCTTAAATTTGTTATTCTGCATGATTATTTGAGA
*
21284660 TCTGCT
1 ACTGCT
21284666 TCTGTCAATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
38 4 0.10
39 38 0.90
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.48
Consensus pattern (39 bp):
ACTGCTCTTAAATTTGTTATTCTGCATGATTATTTGAGA
Found at i:21286210 original size:60 final size:60
Alignment explanation
Indices: 21286137--21286262 Score: 243
Period size: 60 Copynumber: 2.1 Consensus size: 60
21286127 TGGGCCTAAT
*
21286137 TTTATTTCCATGTTCTTTTGTAGAAATTAGTTATGAACAAGGTAATATATATAGATATAG
1 TTTATTTCCATGTTCTTTTGTACAAATTAGTTATGAACAAGGTAATATATATAGATATAG
21286197 TTTATTTCCATGTTCTTTTGTACAAATTAGTTATGAACAAGGTAATATATATAGATATAG
1 TTTATTTCCATGTTCTTTTGTACAAATTAGTTATGAACAAGGTAATATATATAGATATAG
21286257 TTTATT
1 TTTATT
21286263 AATGAACAAG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 65 1.00
ACGTcount: A:0.34, C:0.07, G:0.13, T:0.45
Consensus pattern (60 bp):
TTTATTTCCATGTTCTTTTGTACAAATTAGTTATGAACAAGGTAATATATATAGATATAG
Found at i:21286843 original size:106 final size:105
Alignment explanation
Indices: 21286589--21287126 Score: 786
Period size: 106 Copynumber: 5.2 Consensus size: 105
21286579 ATTTTAAAAA
* * * *** * *
21286589 TTTTATTTTATTTTGAAATTACCGAAATAAATTAAAACATATTTAAAGTTTTA-TTTGAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATTT
* * ** *
21286653 TATTTGATTTTAATTTTATCACGGAAAATATTTTATCTAC
66 TACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
21286693 TTTTA--TT-TTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATTT
* *
21286755 TACTTGATTTGAATTTACTCACTAAAAATATTTTGTCTAC
66 TACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
*
21286795 TTTTATTTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATT
1 TTTTATTTT-ATTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATT
*
21286860 TTA-TTAGATTTTAATTTAATCACAAAAAATATTTTGTCTAC
65 TTACTT-GATTTTAATTTAATCACTAAAAATATTTTGTCTAC
* * *
21286901 TTTTATTTTATTTTTTAAATTACCTAACTAAATTAAAATGTCTTTAAAGCTTTATTTTAAATATT
1 TTTTATTTTA-TTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATT
21286966 TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
65 TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
* *
21287007 TTTTATTTTATTTTTTAAATTACCTAATTAAATTAATTTTTCTTTAAAGTTTTATTTTAAATATT
1 TTTTATTTTA-TTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATT
21287072 TTACTTGATTTTAATTTAATCACTAAAAATA--TTGTCTAC
65 TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
21287111 -TTTATTTTATTTTTAA
1 TTTTATTTTATTTTTAA
21287127 TTCAAAATAA
Statistics
Matches: 397, Mismatches: 29, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
101 36 0.09
102 57 0.14
103 9 0.02
104 15 0.04
105 3 0.01
106 275 0.69
107 2 0.01
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.53
Consensus pattern (105 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATTT
TACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
Found at i:21287225 original size:9 final size:9
Alignment explanation
Indices: 21287211--21287494 Score: 72
Period size: 9 Copynumber: 30.7 Consensus size: 9
21287201 TCCCATCAAC
21287211 AACTTACAT
1 AACTTACAT
21287220 AACTTACAT
1 AACTTACAT
21287229 AA--TACAT
1 AACTTACAT
*
21287236 AAATATATATCAT
1 -AA-CT-TA-CAT
21287249 ATA-TTACAT
1 A-ACTTACAT
*
21287258 AAATTACAT
1 AACTTACAT
** * *
21287267 AAGATAAAC
1 AACTTACAT
21287276 AACTTACAT
1 AACTTACAT
*
21287285 AATTTACAT
1 AACTTACAT
*
21287294 AACTTACGT
1 AACTTACAT
21287303 AAC--ACAT
1 AACTTACAT
* *
21287310 AAGTATATATT
1 AACT-TACA-T
*
21287321 ATATCGTACAT
1 A-A-CTTACAT
**
21287332 AGTTTACAT
1 AACTTACAT
21287341 AA-TT-CGGAT
1 AACTTAC--AT
21287350 AACTTACAT
1 AACTTACAT
*
21287359 AATTTACAT
1 AACTTACAT
21287368 AACTTACAT
1 AACTTACAT
21287377 ATA-TAATACAT
1 A-ACT--TACAT
*
21287388 AAATATATATCAT
1 -AA-CT-TA-CAT
* *
21287401 ATCGTACAT
1 AACTTACAT
*
21287410 AATTTACAT
1 AACTTACAT
21287419 AA-TT-CGGAT
1 AACTTAC--AT
*
21287428 AACTTACAC
1 AACTTACAT
*
21287437 AATTTACAT
1 AACTTACAT
21287446 AACTTACAT
1 AACTTACAT
21287455 AA--TACAT
1 AACTTACAT
* *
21287462 AA-ATATAT
1 AACTTACAT
* *
21287470 ATCATATCAT
1 AACTTA-CAT
21287480 AACTTACAT
1 AACTTACAT
21287489 AACTTA
1 AACTTA
21287495 ATTATACTTA
Statistics
Matches: 205, Mismatches: 38, Indels: 64
0.67 0.12 0.21
Matches are distributed among these distances:
7 19 0.09
8 12 0.06
9 124 0.60
10 17 0.08
11 13 0.06
12 12 0.06
13 8 0.04
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (9 bp):
AACTTACAT
Found at i:21287408 original size:78 final size:74
Alignment explanation
Indices: 21287214--21287477 Score: 359
Period size: 74 Copynumber: 3.5 Consensus size: 74
21287204 CATCAACAAC
** * * ** *
21287214 TTACATAACTTACATAATACATAAATATATATCATATATTACATAAATTACATAAGAT-AAACAA
1 TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAA-TTCGGATAA
21287278 CTTACATAAT
65 CTTACATAAT
* * * * *
21287288 TTACATAACTTACGTAACACATAAGTATATATTATATCGTACATAGTTTACATAATTCGGATAAC
1 TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGATAAC
21287353 TTACATAAT
66 TTACATAAT
21287362 TTACATAACTTACATATATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGA
1 TTACATAACTTAC----ATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGA
*
21287427 TAACTTACACAAT
62 TAACTTACATAAT
21287440 TTACATAACTTACATAATACATAAATATATATCATATC
1 TTACATAACTTACATAATACATAAATATATATCATATC
21287478 ATAACTTACA
Statistics
Matches: 167, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
73 1 0.01
74 98 0.59
78 68 0.41
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.36
Consensus pattern (74 bp):
TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGATAAC
TTACATAAT
Found at i:21293310 original size:31 final size:31
Alignment explanation
Indices: 21293248--21293330 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
21293238 TTAGAATTAA
* *
21293248 TGTTTTTGGCTGTATTTTTTATGCTAAATTTGC
1 TGTTTTTGGCTGCA--TTTTATACTAAATTTGC
* *
21293281 TGTTTTTGGCTGCATTTTATACTATATTTGT
1 TGTTTTTGGCTGCATTTTATACTAAATTTGC
* * *
21293312 TGTATTTGGTTGGATTTTA
1 TGTTTTTGGCTGCATTTTA
21293331 ATGCAGGAAG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 30 0.70
33 13 0.30
ACGTcount: A:0.16, C:0.07, G:0.19, T:0.58
Consensus pattern (31 bp):
TGTTTTTGGCTGCATTTTATACTAAATTTGC
Found at i:21297110 original size:34 final size:34
Alignment explanation
Indices: 21297071--21297161 Score: 98
Period size: 34 Copynumber: 2.7 Consensus size: 34
21297061 TCAAGCCCAT
* *
21297071 TGGGCCTAAGCCCTATTCAGATAACAGCAG-ATAC
1 TGGGCCTAAGCCCTTTTCAGATAACA-CAGTAAAC
* *
21297105 TGGGCCGAAGCCCTTTTCA-A-AATACAGTAAAC
1 TGGGCCTAAGCCCTTTTCAGATAACACAGTAAAC
*
21297137 TGGGCCTTAGCCCCTTTTCAGATAA
1 TGGGCCTAAG-CCCTTTTCAGATAA
21297162 TAGTATGGCC
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
31 3 0.06
32 14 0.30
33 10 0.21
34 18 0.38
35 2 0.04
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (34 bp):
TGGGCCTAAGCCCTTTTCAGATAACACAGTAAAC
Found at i:21298608 original size:5 final size:5
Alignment explanation
Indices: 21298575--21298642 Score: 66
Period size: 5 Copynumber: 13.0 Consensus size: 5
21298565 GTCTATGGAG
*
21298575 GAAAA GAAAAA GAGAAA GAAGAT GAAAA GAAAA GAAAA GAAAA GAAAA
1 GAAAA G-AAAA GA-AAA GAA-AA GAAAA GAAAA GAAAA GAAAA GAAAA
* *
21298623 -AAAG GAAAA AAAGAA GAAAA
1 GAAAA GAAAA GAA-AA GAAAA
21298643 AACTGAATCC
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
4 3 0.06
5 31 0.60
6 18 0.35
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.01
Consensus pattern (5 bp):
GAAAA
Found at i:21298631 original size:8 final size:8
Alignment explanation
Indices: 21298576--21298643 Score: 50
Period size: 8 Copynumber: 8.5 Consensus size: 8
21298566 TCTATGGAGG
21298576 AAAAGAAA
1 AAAAGAAA
*
21298584 AAGAG-AA
1 AAAAGAAA
* **
21298591 AGAAGATG
1 AAAAGAAA
21298599 AAAAGAAA
1 AAAAGAAA
* *
21298607 AGAA-AAG
1 AAAAGAAA
21298614 AAAAGAAA
1 AAAAGAAA
21298622 AAAAGGAAA
1 AAAA-GAAA
21298631 AAAAGAAGA
1 AAAAGAA-A
21298640 AAAA
1 AAAA
21298644 ACTGAATCCT
Statistics
Matches: 44, Mismatches: 12, Indels: 7
0.70 0.19 0.11
Matches are distributed among these distances:
7 10 0.23
8 21 0.48
9 13 0.30
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.01
Consensus pattern (8 bp):
AAAAGAAA
Found at i:21303296 original size:5 final size:5
Alignment explanation
Indices: 21303286--21303326 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
21303276 GTAGATGAAG
*
21303286 AGAAA AGAAA AGAAA AGAAA AG-AA GGAAA AGAAGA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAA-A AGAAA A
21303327 AACTGAATCC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 3 0.09
5 24 0.75
6 5 0.16
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:21303304 original size:15 final size:15
Alignment explanation
Indices: 21303286--21303326 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
21303276 GTAGATGAAG
21303286 AGAAAAGAAAAGAAA
1 AGAAAAGAAAAGAAA
*
21303301 AGAAAAG-AAGGAAA
1 AGAAAAGAAAAGAAA
21303315 AGAAGAAGAAAA
1 AGAA-AAGAAAA
21303327 AACTGAATCC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 10 0.45
15 10 0.45
16 2 0.09
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (15 bp):
AGAAAAGAAAAGAAA
Found at i:21304253 original size:19 final size:18
Alignment explanation
Indices: 21304216--21304259 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
21304206 ATACATACAG
21304216 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
21304233 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
21304252 TACTAATT
1 TAATAATT
21304260 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:21309390 original size:93 final size:94
Alignment explanation
Indices: 21309276--21309633 Score: 535
Period size: 93 Copynumber: 3.9 Consensus size: 94
21309266 GTCCATAAGT
* * * * **
21309276 GAACTCAGACTCAACTCAACGAGCTCGAG-CGTTCGCATCTATAAGTGAACTTGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGTATCCATAAGTGAACTCAGACTCAACTCA
*
21309340 ACGAGCTCGGATGCCTAATTACATCTCAC
66 ACGAGCTCGGATGCCTAGTTACATCTCAC
*
21309369 GAACTCGGACTCAACTCAACGAGTTCGA-ACGTTCGTATCCATAAGTGAACTCAAACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGTATCCATAAGTGAACTCAGACTCAACTCA
21309433 ACGAGCTCGGATGCCTAGTTACATCTCAC
66 ACGAGCTCGGATGCCTAGTTACATCTCAC
* * * *
21309462 GAACTCGGACTCAACTCAAAGAGTTC-AGACGTTCGAATCTATTAGTGAACTCAGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGTATCCATAAGTGAACTCAGACTCAACTCA
* *
21309526 ACGAGCTCGGATGCCTAGTTATATCTAAC
66 ACGAGCTCGGATGCCTAGTTACATCTCAC
* *
21309555 GAACTCGGACTCAACTCAACTAGTTCG-GACGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGTATCCATAAGTGAACTCAGACTCAACTCA
*
21309619 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
21309634 CAAATATCCG
Statistics
Matches: 240, Mismatches: 22, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
92 1 0.00
93 239 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (94 bp):
GAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGTATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:21309626 original size:46 final size:46
Alignment explanation
Indices: 21309267--21309629 Score: 265
Period size: 46 Copynumber: 7.8 Consensus size: 46
21309257 ATGTAACTCG
* *
21309267 TCCATAAGTGAACTCAGACTCAACTCAACGAGCTC-GAGCGTTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-CGTTCGTA
* * * *
21309313 TCTATAAGTGAACTTGGACTCAACTCAACGAGCTCGGA--TGCCTAA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGT-A
* * * * *
21309358 TTACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACGTTCGTA
1 -TCCA--TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGTA
** * * *
21309406 TCCATAAGTGAACTCAAACTCAACTCAACGAGCTCGGATGCCTAGT-
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGTA
* * * * * * *
21309452 TACATCTCA-CGAACTCGGACTCAACTCAAAGAGTTCAGACGTTCGAA
1 TCCA--TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGTA
* * * * * *
21309499 TCTATTAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCG-TA
* * * *
21309547 TATC-TAA-CGAACTCGGACTCAACTCAACTAGTTCGGACGTTCGTA
1 T-CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGTA
*
21309592 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
21309630 TGCCCAAATA
Statistics
Matches: 237, Mismatches: 62, Indels: 36
0.71 0.19 0.11
Matches are distributed among these distances:
44 3 0.01
45 11 0.05
46 121 0.51
47 90 0.38
48 9 0.04
49 3 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (46 bp):
TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGTA
Found at i:21309704 original size:55 final size:55
Alignment explanation
Indices: 21309638--21309747 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
21309628 GATGCCCAAA
* *
21309638 TATCCGAATCTATTCCTAAGGTTCAACAGGACTTTCCTCGTTTGTGCTCCTTTAC
1 TATCCGAATCTATTCCTAAGGTTCAACAAGACTTTCCTCGTTTGTACTCCTTTAC
21309693 TATCCGAATCTATTCCTAAGGTTCAACAAGACTTTCCTCGTTTGTACTCCTTTAC
1 TATCCGAATCTATTCCTAAGGTTCAACAAGACTTTCCTCGTTTGTACTCCTTTAC
21309748 CATTCTCTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.22, C:0.27, G:0.13, T:0.38
Consensus pattern (55 bp):
TATCCGAATCTATTCCTAAGGTTCAACAAGACTTTCCTCGTTTGTACTCCTTTAC
Found at i:21315183 original size:46 final size:45
Alignment explanation
Indices: 21315116--21315478 Score: 269
Period size: 46 Copynumber: 7.8 Consensus size: 45
21315106 ATATAACCCG
* *
21315116 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTT-ACA
*
21315162 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGATGCCTAGTTACA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGA---C--GTTACA
* * * *
21315212 T-C-TCA-CGAACTCGGACTCAACTCAACAAGTTCGTACGTTCGCA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTT-ACA
* * * *
21315255 TCCATAAGTGAACTCAGACTCAACTCAACGAGCTCAGATGCCTAGTTACA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGTTC-G--GAC--GTTACA
* * * * *
21315305 T-C-TCA-CGAACTTGGACTCAACTCAACGATTTCGGATGTTCGCA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTT-ACA
* *
21315348 TCCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATTCCTAGTTACA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTACA
* * *
21315398 T-C-TCA-CGAATTCGGACTCAACTCAACGAGTTCGGACGTTTGCA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACG-TTACA
* *
21315441 TCCATAAGTGAACTCGGACTTAACTCAACGAGTTCGGA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
21315479 TGCCCAAATA
Statistics
Matches: 247, Mismatches: 41, Indels: 58
0.71 0.12 0.17
Matches are distributed among these distances:
42 7 0.03
43 11 0.04
44 6 0.02
45 6 0.02
46 112 0.45
47 75 0.30
48 6 0.02
49 5 0.02
50 10 0.04
51 9 0.04
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (45 bp):
TCCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTACA
Found at i:21315232 original size:93 final size:93
Alignment explanation
Indices: 21315124--21315482 Score: 558
Period size: 93 Copynumber: 3.9 Consensus size: 93
21315114 CGTCCATAAG
* * * *
21315124 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
21315189 ACGAGCTT-GGATGCCTAGTTACATCTCA
66 ACGAG-TTCGGATGCCTAGTTACATCTCA
* *
21315217 CGAACTCGGACTCAACTCAACAAGTTCGTACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
* *
21315282 ACGAGCTCAGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
21315310 CGAACTTGGACTCAACTCAACGATTTCGGATGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
21315375 ACGAGTTCGGATTCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * *
21315403 CGAATTCGGACTCAACTCAACGAGTTCGGACGTTTGCATCCATAAGTGAACTCGGACTTAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
21315468 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
21315483 CAAATATCCG
Statistics
Matches: 241, Mismatches: 24, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
92 1 0.00
93 240 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:21323355 original size:22 final size:22
Alignment explanation
Indices: 21323327--21323370 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
21323317 CCGTCGCATG
21323327 AACTGGACGAGAGGGGGGTGGT
1 AACTGGACGAGAGGGGGGTGGT
21323349 AACTGGACGAGAGGGGGGTGGT
1 AACTGGACGAGAGGGGGGTGGT
21323371 TGCTGAGACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.09, G:0.55, T:0.14
Consensus pattern (22 bp):
AACTGGACGAGAGGGGGGTGGT
Found at i:21325388 original size:46 final size:45
Alignment explanation
Indices: 21325317--21325483 Score: 142
Period size: 46 Copynumber: 3.6 Consensus size: 45
21325307 GCCCATAAGC
* * *
21325317 GAACTCGGACTCAAATCAATGAGCTCGGGCATTTGCATCCATGAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATCCAT-AGA
* * * *
21325363 GAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTC-T--C
1 GAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCATC-CATAGA
* * * *
21325410 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCTATAAGA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATCCAT-AGA
*
21325456 GAACTCGGACTCAACTCAACGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGCTCGG
21325484 ATGCCAAAAT
Statistics
Matches: 98, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
43 7 0.07
44 1 0.01
46 53 0.54
47 26 0.27
48 1 0.01
49 1 0.01
50 8 0.08
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATCCATAGA
Found at i:21325460 original size:93 final size:93
Alignment explanation
Indices: 21325316--21325488 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 93
21325306 TGCCCATAAG
* * * * *
21325316 CGAACTCGGACTCAAATCAATGAGCTCGGGCATTTGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGAGAACTCGGACTCAACTCA
21325381 ACAAGCTCGGATGCCTAGTTACATCTCT
66 ACAAGCTCGGATGCCTAGTTACATCTCT
* * *
21325409 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCTATAAGAGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGAGAACTCGGACTCAACTCA
* *
21325474 ACGAGTTCGGATGCC
66 ACAAGCTCGGATGCC
21325489 AAAATATCCT
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGAGAACTCGGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTCT
Found at i:21341672 original size:13 final size:13
Alignment explanation
Indices: 21341654--21341694 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
21341644 CTGCCAAAGG
21341654 GACACGACCGTGT
1 GACACGACCGTGT
21341667 GACACGACCGTGT
1 GACACGACCGTGT
21341680 GACAC-ATCCGTGT
1 GACACGA-CCGTGT
21341693 GA
1 GA
21341695 GAAAGCCTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 1 0.04
13 26 0.96
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.17
Consensus pattern (13 bp):
GACACGACCGTGT
Found at i:21342866 original size:41 final size:42
Alignment explanation
Indices: 21342816--21342932 Score: 148
Period size: 41 Copynumber: 2.8 Consensus size: 42
21342806 CTTAATTTTT
*
21342816 CCTTAAATTGCACATATGTGCCCCTATTTGTACTTT-GATAC
1 CCTTGAATTGCACATATGTGCCCCTATTTGTACTTTCGATAC
*
21342857 CCTTGAATTGCACATACGTGCCCCTATTTGTA-TTTCGATAC
1 CCTTGAATTGCACATATGTGCCCCTATTTGTACTTTCGATAC
* * * * * *
21342898 CCCTGAATTGCAGAAATTTGCCCTTGTTTGTACTT
1 CCTTGAATTGCACATATGTGCCCCTATTTGTACTT
21342933 CAGTACCCCT
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
40 3 0.05
41 60 0.92
42 2 0.03
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (42 bp):
CCTTGAATTGCACATATGTGCCCCTATTTGTACTTTCGATAC
Found at i:21343874 original size:23 final size:24
Alignment explanation
Indices: 21343813--21343875 Score: 58
Period size: 23 Copynumber: 2.6 Consensus size: 24
21343803 TACTCATTCG
* *
21343813 AATATATATATACATATCAATACAAA
1 AATATATAT-TA-AAATCAATAAAAA
* *
21343839 AAT-TTTATAAAAATC-ATAAAAA
1 AATATATATTAAAATCAATAAAAA
21343861 AATATATATTAAAAT
1 AATATATATTAAAAT
21343876 AGCTCCAACC
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
22 9 0.30
23 13 0.43
24 1 0.03
25 4 0.13
26 3 0.10
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.33
Consensus pattern (24 bp):
AATATATATTAAAATCAATAAAAA
Found at i:21344890 original size:25 final size:25
Alignment explanation
Indices: 21344856--21344915 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
21344846 CTGCTAGGTA
21344856 ATAAA-CCTGAT-TCAATACACCAGC
1 ATAAAGCCTGATATC-ATACACCAGC
**
21344880 ATAAAGCCTGATATCATACACTGGC
1 ATAAAGCCTGATATCATACACCAGC
21344905 ATCAAAGCCTG
1 AT-AAAGCCTG
21344916 CTAGGAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 5 0.16
25 16 0.52
26 10 0.32
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.22
Consensus pattern (25 bp):
ATAAAGCCTGATATCATACACCAGC
Found at i:21344942 original size:42 final size:42
Alignment explanation
Indices: 21344883--21344984 Score: 154
Period size: 42 Copynumber: 2.5 Consensus size: 42
21344873 CACCAGCATA
*
21344883 AAGCCTGATATCATACACTGGCATCAAAGCCTGCTAGGAAAT
1 AAGCCTGATATCATACACTGGCATCAAAACCTGCTAGGAAAT
* * *
21344925 AAGCCTAATATCATACACCGGCATCAAAACCTGCTAGGCAAT
1 AAGCCTGATATCATACACTGGCATCAAAACCTGCTAGGAAAT
21344967 AAGCCTGATAT-AT-CACTG
1 AAGCCTGATATCATACACTG
21344985 TTTCAAAGTT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 4 0.07
41 2 0.04
42 48 0.89
ACGTcount: A:0.36, C:0.25, G:0.17, T:0.22
Consensus pattern (42 bp):
AAGCCTGATATCATACACTGGCATCAAAACCTGCTAGGAAAT
Found at i:21348563 original size:15 final size:15
Alignment explanation
Indices: 21348540--21348569 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
21348530 TCAAAAACTC
21348540 TAATACAAAACATAT
1 TAATACAAAACATAT
*
21348555 TAATCCAAAACATAT
1 TAATACAAAACATAT
21348570 CTTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:21349594 original size:21 final size:21
Alignment explanation
Indices: 21349556--21349595 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
21349546 GATATTGAAT
* * *
21349556 TAGTAGTGTATGTTTTTAGTG
1 TAGTAGTGCATATGTTTAGTG
21349577 TAGTAGTGCATATGTTTAG
1 TAGTAGTGCATATGTTTAG
21349596 GTAAGGTTGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.03, G:0.28, T:0.47
Consensus pattern (21 bp):
TAGTAGTGCATATGTTTAGTG
Found at i:21356374 original size:6 final size:6
Alignment explanation
Indices: 21356365--21356397 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
21356355 AATAAAATTG
*
21356365 AAATGA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA
21356398 GATAGGAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:21376056 original size:23 final size:23
Alignment explanation
Indices: 21376030--21376092 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 23
21376020 AGCTCTATTG
**
21376030 AGCTGAAACTGTAAG-TTTTATCA
1 AGCTGAAACTGTAAGCTCATA-CA
* *
21376053 AGCTG-AACAGTAAGCTCATACG
1 AGCTGAAACTGTAAGCTCATACA
21376075 AGCTGAAACTGTAAGCTC
1 AGCTGAAACTGTAAGCTC
21376093 CAATGAGTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
22 14 0.42
23 19 0.58
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (23 bp):
AGCTGAAACTGTAAGCTCATACA
Found at i:21376148 original size:26 final size:24
Alignment explanation
Indices: 21376053--21376152 Score: 82
Period size: 23 Copynumber: 4.2 Consensus size: 24
21376043 AGTTTTATCA
*
21376053 AGCTG-AA-CAGTAAGCTCATACG
1 AGCTGAAATCAGTAAGCTCAAACG
* * *
21376075 AGCTGAAA-CTGTAAGCTCCAATG
1 AGCTGAAATCAGTAAGCTCAAACG
* **
21376098 AGTTGAAAAT-AGTAAGCTCTTACG
1 AGCTG-AAATCAGTAAGCTCAAACG
21376122 AGCTGATATATCAGTAAGCTCAAACG
1 AGCTGA-A-ATCAGTAAGCTCAAACG
21376148 AGCTG
1 AGCTG
21376153 TGGTGAGTCC
Statistics
Matches: 60, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
22 5 0.08
23 18 0.30
24 18 0.30
25 2 0.03
26 17 0.28
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (24 bp):
AGCTGAAATCAGTAAGCTCAAACG
Found at i:21384212 original size:40 final size:40
Alignment explanation
Indices: 21384128--21384311 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
21384118 TTGAATGCTG
* * * *
21384128 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
21384167 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * **
21384208 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACCAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
21384248 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
21384288 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
21384312 GAATGAGTTA
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 110 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:21384332 original size:39 final size:39
Alignment explanation
Indices: 21384208--21384358 Score: 117
Period size: 40 Copynumber: 3.8 Consensus size: 39
21384198 AGTTATTAAT
* ** * * *
21384208 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATAC-CAAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAG-TTCTAAAA
** *
21384248 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
21384288 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
21384328 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
21384359 GAGCTATATC
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 29 0.31
40 64 0.69
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:21391146 original size:27 final size:27
Alignment explanation
Indices: 21391112--21391314 Score: 221
Period size: 27 Copynumber: 7.6 Consensus size: 27
21391102 TAAATTGTAC
* *
21391112 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGATTATGT
* * **
21391139 TGCACTAAGTGTGCGAAATGAAAATGT
1 AGCACTAAGTGTGCGAATTGATTATGT
* * **
21391166 TGCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGAATTGATTATGT
**
21391192 ATGCACTAAGTGTGCGAATTGACCATGT
1 A-GCACTAAGTGTGCGAATTGATTATGT
* *
21391220 GGCACTAAGTGTGCGAGTTGATTATGT
1 AGCACTAAGTGTGCGAATTGATTATGT
*
21391247 AGCACTAAGTGTGCG-ATTGATTACGT
1 AGCACTAAGTGTGCGAATTGATTATGT
* *
21391273 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGATTATGT
*
21391300 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21391315 GACTCAATAT
Statistics
Matches: 153, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
26 24 0.16
27 129 0.84
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGATTATGT
Found at i:21399873 original size:43 final size:43
Alignment explanation
Indices: 21399816--21399968 Score: 168
Period size: 43 Copynumber: 3.6 Consensus size: 43
21399806 ATTATCGAGA
* * * *
21399816 TATGATTGCATGTAAGACCATGTCTGGGAAATTGGCATTGTAT
1 TATGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
21399859 TGTGATTACGTGTAAGACCATGTCT-GGACATTCGTATCGT-T
1 TATGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *
21399900 TATGATTTCGTGTAAGACCATGCCTGGGACATTGGCATCGATAT
1 TATGATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TAT
* * *
21399944 AAT-ATTACATGTAAGACCATATCTG
1 TATGATTACGTGTAAGACCATGTCTG
21399969 ATATGGCATT
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
41 23 0.26
42 23 0.26
43 41 0.46
44 3 0.03
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (43 bp):
TATGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:21412727 original size:42 final size:43
Alignment explanation
Indices: 21412656--21412758 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 43
21412646 GCTATTATAG
* **
21412656 ATCGATGCCACTGTCCCAGACAGGGTCTTACA-GGAATCAAA-
1 ATCGATGCCAATGTCCCAGACAGCATCTTACATGGAATCAAAT
* * * *
21412697 ATACGATGCTAATGTCCCAGACATCATCTTACATGTAATCACAT
1 AT-CGATGCCAATGTCCCAGACAGCATCTTACATGGAATCAAAT
21412741 ATCGATGCCAATGTCCCA
1 ATCGATGCCAATGTCCCA
21412759 AATGTAGTCT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
41 2 0.04
42 25 0.49
43 22 0.43
44 2 0.04
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (43 bp):
ATCGATGCCAATGTCCCAGACAGCATCTTACATGGAATCAAAT
Found at i:21418087 original size:38 final size:38
Alignment explanation
Indices: 21417999--21418202 Score: 201
Period size: 38 Copynumber: 5.3 Consensus size: 38
21417989 CGAGGTATAA
* * * * *
21417999 AACCCGAACATAACACCAGCATGAAGCCTACGGGACTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGA-TTT
* * * * *
21418038 AAACTCAGATATAATACTAGCACTAGGCCTGCGGGATTT
1 -AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* *
21418077 AACCCGGATATAATACCATCACGAAGCCTGCAGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* *
21418115 AACCTGGATGTAATACCAGCACGAAGCCTGCGGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* ** **
21418153 AACCCGGATATAATTCCAGCATAAAGCCTGCAGGTCTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGC-GGGATTT
21418192 AAGCCCGGATA
1 AA-CCCGGATA
21418203 CACATCAAAT
Statistics
Matches: 134, Mismatches: 28, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
38 91 0.68
39 10 0.07
40 33 0.25
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (38 bp):
AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
Found at i:21421461 original size:43 final size:43
Alignment explanation
Indices: 21421315--21421453 Score: 167
Period size: 43 Copynumber: 3.2 Consensus size: 43
21421305 TGAAAGTTAC
* * * *
21421315 GTAAGACCATGTCTGGGACATTGACATTG-TATTGTGATTACGT
1 GTAAGACCATGTCTAGGACATTGGCATCGATA-TGAGATTACGT
* *
21421358 GTAAGACCATGTCTGGGACATTGGCATC-ATTAT-ATGATTTCGT
1 GTAAGACCATGTCTAGGACATTGGCATCGA-TATGA-GATTACGT
*
21421401 GTAAGACCATGTCTAGGACATTGGCATCGATATGAGATTACAT
1 GTAAGACCATGTCTAGGACATTGGCATCGATATGAGATTACGT
21421444 GTAAGACCAT
1 GTAAGACCAT
21421454 ATTTAGGATA
Statistics
Matches: 84, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
43 80 0.95
44 4 0.05
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32
Consensus pattern (43 bp):
GTAAGACCATGTCTAGGACATTGGCATCGATATGAGATTACGT
Found at i:21425089 original size:21 final size:21
Alignment explanation
Indices: 21425065--21425124 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
21425055 TTCTATTTAA
21425065 CTCTTATGAGCTTTTGTTCA-G
1 CTCTTATGAGCTTTTGTT-ATG
* * *
21425086 CTCTTTTGAGCTTCTATTATG
1 CTCTTATGAGCTTTTGTTATG
*
21425107 TTCTTATGAGCTTTTGTT
1 CTCTTATGAGCTTTTGTT
21425125 GGTGTGTTCA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
20 1 0.03
21 30 0.97
ACGTcount: A:0.13, C:0.17, G:0.17, T:0.53
Consensus pattern (21 bp):
CTCTTATGAGCTTTTGTTATG
Found at i:21425103 original size:42 final size:42
Alignment explanation
Indices: 21425044--21425124 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
21425034 GATGGATCAA
*
21425044 CTCTTATGAGTTTCTATT-TAACTCTTATGAGCTTTTGTTCAG
1 CTCTTATGAGCTTCTATTAT-ACTCTTATGAGCTTTTGTTCAG
* **
21425086 CTCTTTTGAGCTTCTATTATGTTCTTATGAGCTTTTGTT
1 CTCTTATGAGCTTCTATTATACTCTTATGAGCTTTTGTT
21425125 GGTGTGTTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 33 0.97
43 1 0.03
ACGTcount: A:0.16, C:0.16, G:0.15, T:0.53
Consensus pattern (42 bp):
CTCTTATGAGCTTCTATTATACTCTTATGAGCTTTTGTTCAG
Found at i:21427547 original size:18 final size:18
Alignment explanation
Indices: 21427515--21427564 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
21427505 AGGCCAATTT
21427515 GGGCCTGTGGG-CCACAC
1 GGGCCTGTGGGCCCACAC
* *
21427532 GGGCTTGTGGGCCCACAT
1 GGGCCTGTGGGCCCACAC
* *
21427550 GGGCGTGTGAGCCCA
1 GGGCCTGTGGGCCCA
21427565 TTTTCCTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 10 0.36
18 18 0.64
ACGTcount: A:0.12, C:0.30, G:0.42, T:0.16
Consensus pattern (18 bp):
GGGCCTGTGGGCCCACAC
Found at i:21434752 original size:23 final size:23
Alignment explanation
Indices: 21434716--21434811 Score: 97
Period size: 23 Copynumber: 4.2 Consensus size: 23
21434706 GACTCACCAT
21434716 AGCTCGTATA-AGCTTACTGATTC
1 AGCTCGTA-AGAGCTTACTGATTC
* *
21434739 ATCTCGTAAGAGCTTACTGTTTC
1 AGCTCGTAAGAGCTTACTGATTC
* ** * *
21434762 AGCTCATTGGAGCTTACCGATCC
1 AGCTCGTAAGAGCTTACTGATTC
*
21434785 AGCTCGAAAGAGCTTACT-ATTC
1 AGCTCGTAAGAGCTTACTGATTC
21434807 AGCTC
1 AGCTC
21434812 AATAGAGCTT
Statistics
Matches: 57, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
22 9 0.16
23 48 0.84
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (23 bp):
AGCTCGTAAGAGCTTACTGATTC
Found at i:21434834 original size:46 final size:46
Alignment explanation
Indices: 21434726--21434846 Score: 131
Period size: 46 Copynumber: 2.6 Consensus size: 46
21434716 AGCTCGTATA
* * * * * *
21434726 AGCTTACTGATTCATCTCGTAAGAGCTTACTGTTTCAGCTCATTGG
1 AGCTTACCGATTCAGCTCGAAAGAGCTTACTGATTCAGCTCAATAG
*
21434772 AGCTTACCGATCCAGCTCGAAAGAGCTTACT-ATTCAGCTCAATAG
1 AGCTTACCGATTCAGCTCGAAAGAGCTTACTGATTCAGCTCAATAG
21434817 AGCTTACC-ATTTTCAGCTC-AATAGAGCTTA
1 AGCTTACCGA--TTCAGCTCGAA-AGAGCTTA
21434847 TCGACCATGA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
44 1 0.02
45 21 0.33
46 42 0.66
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (46 bp):
AGCTTACCGATTCAGCTCGAAAGAGCTTACTGATTCAGCTCAATAG
Found at i:21434836 original size:24 final size:24
Alignment explanation
Indices: 21434758--21434846 Score: 89
Period size: 24 Copynumber: 3.8 Consensus size: 24
21434748 GAGCTTACTG
* *
21434758 TTTCAGCTCATTGGAGCTTACCGA-
1 TTTCAGCTCAATAGAGCTTACC-AT
*
21434782 -TCCAGCTCGAA-AGAGCTTA-C-T
1 TTTCAGCTC-AATAGAGCTTACCAT
*
21434803 ATTCAGCTCAATAGAGCTTACCAT
1 TTTCAGCTCAATAGAGCTTACCAT
21434827 TTTCAGCTCAATAGAGCTTA
1 TTTCAGCTCAATAGAGCTTA
21434847 TCGACCATGA
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
21 2 0.04
22 16 0.30
23 15 0.28
24 21 0.39
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (24 bp):
TTTCAGCTCAATAGAGCTTACCAT
Found at i:21436325 original size:40 final size:40
Alignment explanation
Indices: 21436255--21436432 Score: 263
Period size: 40 Copynumber: 4.5 Consensus size: 40
21436245 AAACCAAGTA
* *
21436255 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
21436294 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
21436334 CCTTCGGGACTTAGCCCGGATATAGTAACTTGGACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
21436374 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
21436414 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
21436433 TTACCATCCA
Statistics
Matches: 129, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
39 15 0.12
40 114 0.88
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:21444145 original size:40 final size:40
Alignment explanation
Indices: 21444075--21444251 Score: 261
Period size: 40 Copynumber: 4.5 Consensus size: 40
21444065 AAACCAAGTA
* *
21444075 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
21444114 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
21444154 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
21444194 CCTTCGGGACTTAGCTCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
21444234 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
21444252 ATTACCATTC
Statistics
Matches: 128, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
39 15 0.12
40 113 0.88
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:21452234 original size:23 final size:23
Alignment explanation
Indices: 21452198--21452332 Score: 98
Period size: 23 Copynumber: 5.9 Consensus size: 23
21452188 GGACTCACCA
* * *
21452198 CAGCTCGTATGAGCTTACTAATT
1 CAGCTCATAAGAGCTTACTGATT
* *
21452221 CAGCTCATAAGAGCTTATTGTTT
1 CAGCTCATAAGAGCTTACTGATT
* ** *
21452244 CATCTCATTGGAGCTTATTGATT
1 CAGCTCATAAGAGCTTACTGATT
*
21452267 CAGCTCGA-AAGAACTTACTG-TT
1 CAGCTC-ATAAGAGCTTACTGATT
* *
21452289 CAGCTCAATAA-AGCTTATTGTTTT
1 CAGCTC-ATAAGAGCTTACTG-ATT
21452313 CAGCTCA-ATAGAGCTTACTG
1 CAGCTCATA-AGAGCTTACTG
21452333 TTTATCAGCT
Statistics
Matches: 88, Mismatches: 18, Indels: 11
0.75 0.15 0.09
Matches are distributed among these distances:
22 17 0.19
23 54 0.61
24 17 0.19
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (23 bp):
CAGCTCATAAGAGCTTACTGATT
Found at i:21452314 original size:24 final size:23
Alignment explanation
Indices: 21452219--21452345 Score: 100
Period size: 23 Copynumber: 5.4 Consensus size: 23
21452209 AGCTTACTAA
21452219 TTCAGCTC-ATAAGAGCTTATTGT
1 TTCAGCTCAATAA-AGCTTATTGT
* * ** *
21452242 TTCATCTCATTGGAGCTTATTGA
1 TTCAGCTCAATAAAGCTTATTGT
*
21452265 TTCAGCTCGAA-AGAA-CTTACTG-
1 TTCAGCTC-AATA-AAGCTTATTGT
21452287 TTCAGCTCAATAAAGCTTATTGTT
1 TTCAGCTCAATAAAGCTTATTG-T
* *
21452311 TTCAGCTCAATAGAGCTTACTGTT
1 TTCAGCTCAATAAAGCTTATTG-T
21452335 TATCAGCTCAA
1 T-TCAGCTCAA
21452346 GAGGAGCTTA
Statistics
Matches: 83, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
21 4 0.05
22 15 0.18
23 29 0.35
24 26 0.31
25 9 0.11
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.37
Consensus pattern (23 bp):
TTCAGCTCAATAAAGCTTATTGT
Found at i:21452835 original size:32 final size:32
Alignment explanation
Indices: 21452777--21452840 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
21452767 CGCATATAAG
* *
21452777 CCCATTAGTGTGCAAGATACAGAATATTCAAT
1 CCCATTAGTGTGCAAGATACAAAATATCCAAT
*
21452809 CCCATTAGTGTGCAAGATATAAAATATCCAAT
1 CCCATTAGTGTGCAAGATACAAAATATCCAAT
21452841 GTTATTTCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (32 bp):
CCCATTAGTGTGCAAGATACAAAATATCCAAT
Found at i:21455332 original size:19 final size:19
Alignment explanation
Indices: 21455308--21455347 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
21455298 CCGAACTAAA
* * *
21455308 TTAAAAACATTTGGAAATT
1 TTAAAAAAAGTTGAAAATT
21455327 TTAAAAAAAGTTGAAAATT
1 TTAAAAAAAGTTGAAAATT
21455346 TT
1 TT
21455348 GATCTACCGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.10, T:0.38
Consensus pattern (19 bp):
TTAAAAAAAGTTGAAAATT
Found at i:21464085 original size:45 final size:45
Alignment explanation
Indices: 21464019--21464194 Score: 275
Period size: 45 Copynumber: 4.0 Consensus size: 45
21464009 TATCGTACAG
*
21464019 TACTATTCGGGCCTTTAAGCCTAGCAGGCTATGATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
21464064 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
* * *
21464109 TACTATTCGGGCCTTTGAACCTAGCAGGCTATGATGTCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
* * *
21464154 T-CTATTCGGGCCTTCGAGCCTAGAAGGCTA-AATGCCGGTGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGA
21464195 TTTGATAAAA
Statistics
Matches: 122, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
43 9 0.07
44 26 0.21
45 87 0.71
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
Found at i:21464699 original size:16 final size:18
Alignment explanation
Indices: 21464668--21464700 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
21464658 AACTCGTCAC
21464668 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
21464686 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
21464701 ATCTAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:21467751 original size:21 final size:21
Alignment explanation
Indices: 21467727--21467769 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
21467717 GAATATGTTA
*
21467727 AAAATTAAAAATT-TATGATAG
1 AAAATGAAAAATTGT-TGATAG
*
21467748 AAAATGAAAGATTGTTGATAG
1 AAAATGAAAAATTGTTGATAG
21467769 A
1 A
21467770 CAAACAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.30
Consensus pattern (21 bp):
AAAATGAAAAATTGTTGATAG
Found at i:21470385 original size:38 final size:39
Alignment explanation
Indices: 21470316--21470395 Score: 92
Period size: 38 Copynumber: 2.1 Consensus size: 39
21470306 AGTACATCAT
* * *
21470316 CAACAGAAGCTTATAAGACCTAGTCTTCCCGAA-CTTGC
1 CAACAGAAGCTCATAAGACCTAGTCTACCCGAAGCATGC
* *
21470354 CAACAGAAGCTCATAAGAGCTGATTC-ACCCGAAGCATGC
1 CAACAGAAGCTCATAAGACCT-AGTCTACCCGAAGCATGC
21470393 CAA
1 CAA
21470396 ACAAAAAGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
38 25 0.71
39 10 0.29
ACGTcount: A:0.35, C:0.29, G:0.17, T:0.19
Consensus pattern (39 bp):
CAACAGAAGCTCATAAGACCTAGTCTACCCGAAGCATGC
Found at i:21472347 original size:20 final size:19
Alignment explanation
Indices: 21472318--21472357 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
21472308 AAGTAGTAAC
21472318 ACTTGTAAGTCTATAAAAT
1 ACTTGTAAGTCTATAAAAT
* *
21472337 ACTTAGTAAGTTTATACAAT
1 ACTT-GTAAGTCTATAAAAT
21472357 A
1 A
21472358 TATGTAAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (19 bp):
ACTTGTAAGTCTATAAAAT
Found at i:21472641 original size:21 final size:22
Alignment explanation
Indices: 21472599--21472648 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
21472589 AGGCTCACAT
*
21472599 GCCCGTGTGATCCAAGAGACAC
1 GCCCGTGTGACCCAAGAGACAC
*
21472621 GCCCGTGTGACCCTA-AGACAC
1 GCCCGTGTGACCCAAGAGACAC
*
21472642 ACCCGTG
1 GCCCGTG
21472649 CTGTAGGCCG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.24, C:0.36, G:0.26, T:0.14
Consensus pattern (22 bp):
GCCCGTGTGACCCAAGAGACAC
Done.