Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 71 of 325
Found at i:22190938 original size:56 final size:56
Alignment explanation
Indices: 22190876--22191121 Score: 341
Period size: 56 Copynumber: 4.4 Consensus size: 56
22190866 CATGGCATCT
* *
22190876 ATATATGTGTGCGAGTAAGATCACGTTTAATACGTTGGCATCGGTATGTGATTCCG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCG
* * * *
22190932 ATATATGTGTGCGATTAAGACCACATTTAATACGTTGGCATCAATATGTAAATT-CG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT-GATTCCG
* ** * * *
22190988 ATATATGTGTGCGAGTAAGACCATGTTTAATATATTGACATTGATATGTGATTTCG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCG
**
22191044 ATATATCCGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCG
*
22191100 ATTTATGTGTGCGAGTAAGACC
1 ATATATGTGTGCGAGTAAGACC
22191122 CTATTTGGGA
Statistics
Matches: 162, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
55 3 0.02
56 156 0.96
57 3 0.02
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCG
Found at i:22191139 original size:56 final size:56
Alignment explanation
Indices: 22190876--22191152 Score: 326
Period size: 56 Copynumber: 4.9 Consensus size: 56
22190866 CATGGCATCT
* * *
22190876 ATATATGTGTGCGAGTAAGATCACGTTTAATACGTTGGCATCGGTATGTGATTCCG
1 ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCG
* * *
22190932 ATATATGTGTGCGATTAAGACCACATTTAATACGTTGGCATCAATATGTAAATT-CG
1 ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGT-GATTCCG
** ** * * *
22190988 ATATATGTGTGCGAGTAAGACCATGTTTAATATATTGACATTGATATGTGATTTCG
1 ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCG
** *
22191044 ATATATCCGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCG
1 ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCG
* ***
22191100 ATTTATGTGTGCGAGTAAGACC-CTATTTGGGACAG-TGGCATCGATATGTGATT
1 ATATATGTGTGCGAGTAAGACCAC-ATTTAATAC-GTTGGCATCGATATGTGATT
22191153 ACATGTAAGA
Statistics
Matches: 187, Mismatches: 30, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
55 4 0.02
56 179 0.96
57 4 0.02
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCG
Found at i:22194078 original size:13 final size:13
Alignment explanation
Indices: 22194060--22194086 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22194050 GTCTATTGAG
22194060 TTTGTGATTAGAA
1 TTTGTGATTAGAA
22194073 TTTGTGATTAGAA
1 TTTGTGATTAGAA
22194086 T
1 T
22194087 ATCGAACCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (13 bp):
TTTGTGATTAGAA
Found at i:22195935 original size:12 final size:12
Alignment explanation
Indices: 22195918--22195948 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
22195908 GATTGGGGAC
22195918 AAAGTCTTTTTG
1 AAAGTCTTTTTG
22195930 AAAGTCTTTTTG
1 AAAGTCTTTTTG
22195942 AAAGTCT
1 AAAGTCT
22195949 CACCATGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.29, C:0.10, G:0.16, T:0.45
Consensus pattern (12 bp):
AAAGTCTTTTTG
Found at i:22197678 original size:27 final size:27
Alignment explanation
Indices: 22197627--22197716 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
22197617 GTGACAGAGT
*
22197627 CACCAGATACAAATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
22197656 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
22197683 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
22197711 CACCAG
1 CACCAG
22197717 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 24 0.44
28 23 0.43
29 7 0.13
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:22197869 original size:28 final size:28
Alignment explanation
Indices: 22197822--22197914 Score: 152
Period size: 28 Copynumber: 3.3 Consensus size: 28
22197812 AAATTAACCC
*
22197822 TAGGGGTATAGA-GGTCATTTTGCATACA
1 TAGGGGTATA-ATGGTAATTTTGCATACA
22197850 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
22197878 TAGGGGTATAATGGTAATTTTGTATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
22197906 TAGGGGTAT
1 TAGGGGTAT
22197915 TCTAGTACAT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
27 1 0.02
28 61 0.98
ACGTcount: A:0.30, C:0.06, G:0.28, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:22205372 original size:55 final size:56
Alignment explanation
Indices: 22205307--22205420 Score: 144
Period size: 55 Copynumber: 2.1 Consensus size: 56
22205297 AGCATGGCTG
* *
22205307 CCAGATACAGA-AAATGTGACAGAGTCACTAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACTAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
22205363 CCAGA-ACAGATATATGTGGCAGGGCCACTAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACTAGAACAGATAATTTGTGGCATAGCCA
22205418 CCA
1 CCA
22205421 AGACGCTTCC
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 28 0.55
56 22 0.43
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACTAGAACAGATAATTTGTGGCATAGCCA
Found at i:22205384 original size:27 final size:27
Alignment explanation
Indices: 22205340--22205420 Score: 101
Period size: 27 Copynumber: 2.9 Consensus size: 27
22205330 GTCACTAGAT
22205340 ACAGATATTTTGTGGCAGTGCCACCAGA
1 ACAGATA-TTTGTGGCAGTGCCACCAGA
* * *
22205368 ACAGATATATGTGGCAGGGCCACTAGA
1 ACAGATATTTGTGGCAGTGCCACCAGA
22205395 ACAGATAATTTGTGGCA-TAGCCACCA
1 ACAGAT-ATTTGTGGCAGT-GCCACCA
22205421 AGACGCTTCC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
27 23 0.51
28 22 0.49
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (27 bp):
ACAGATATTTGTGGCAGTGCCACCAGA
Found at i:22205574 original size:28 final size:28
Alignment explanation
Indices: 22205527--22205591 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
22205517 AAATTAACCC
*
22205527 TAGGGGTATAGAGGTTATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
22205555 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
22205583 TAGGGGTAT
1 TAGGGGTAT
22205592 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.29, C:0.06, G:0.29, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:22208386 original size:56 final size:56
Alignment explanation
Indices: 22208300--22208535 Score: 382
Period size: 56 Copynumber: 4.2 Consensus size: 56
22208290 TAGATGTCTA
22208300 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTG
1 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTG
*
22208356 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATATGTG
1 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTG
** * * *
22208412 CGAGTAAGACCATATTTAATACTTTGGCATCGATATGTGATTTTGATATATGTGTA
1 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTG
* * *
22208468 CGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATTCCGATTTATGTGTG
1 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTG
22208524 CAGAGTAAGACC
1 C-GAGTAAGACC
22208536 CTGTCTGGGA
Statistics
Matches: 166, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
56 156 0.94
57 10 0.06
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (56 bp):
CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTG
Found at i:22211555 original size:41 final size:41
Alignment explanation
Indices: 22211498--22211575 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
22211488 ATATATATAT
22211498 ATAACTTCAAAAGTACCAAAATAGATTATCGATAGTGGTAC
1 ATAACTTCAAAAGTACCAAAATAGATTATCGATAGTGGTAC
*
22211539 ATAACTTCAAAAGTACCAAAATAGTTTATCGATAGTG
1 ATAACTTCAAAAGTACCAAAATAGATTATCGATAGTG
22211576 CGATGACGTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (41 bp):
ATAACTTCAAAAGTACCAAAATAGATTATCGATAGTGGTAC
Found at i:22220887 original size:42 final size:45
Alignment explanation
Indices: 22220802--22220907 Score: 137
Period size: 42 Copynumber: 2.4 Consensus size: 45
22220792 AGCTGTATCA
* *
22220802 ATCTCACACACTAAGTGCCAATATATATATAGCCAAAGCTATCTCG
1 ATCTCGCACACTAAGTG-CAATAGATATATAGCCAAAGCTATCTCG
* *
22220848 ATCTCGCACACTAAGTGCAA-AGATATA-ATCGAAA-CTATCTCG
1 ATCTCGCACACTAAGTGCAATAGATATATAGCCAAAGCTATCTCG
*
22220890 ATTTCGCACACTAAGTGC
1 ATCTCGCACACTAAGTGC
22220908 CCATAATTAG
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
42 25 0.45
43 5 0.09
44 6 0.11
45 3 0.05
46 16 0.29
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.25
Consensus pattern (45 bp):
ATCTCGCACACTAAGTGCAATAGATATATAGCCAAAGCTATCTCG
Found at i:22222985 original size:18 final size:18
Alignment explanation
Indices: 22222962--22223002 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
22222952 TTTACTTAGT
22222962 ACTTGAACGACTGTGTAC
1 ACTTGAACGACTGTGTAC
* *
22222980 ACTTGAATGATTGTGTAC
1 ACTTGAACGACTGTGTAC
22222998 ACTTG
1 ACTTG
22223003 CACAAACCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (18 bp):
ACTTGAACGACTGTGTAC
Found at i:22228009 original size:28 final size:28
Alignment explanation
Indices: 22227948--22228009 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
22227938 TCAGTGTACG
*
22227948 AAATATTGAGAATGGCACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAGTGTGCA
*
22227976 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAGTGTGCA
22228004 AAATAT
1 AAATAT
22228010 CGAATGATTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAGTGTGCA
Found at i:22229998 original size:29 final size:29
Alignment explanation
Indices: 22229959--22230174 Score: 222
Period size: 29 Copynumber: 7.6 Consensus size: 29
22229949 CCGTAACCGA
*
22229959 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
* ***
22229988 GCACTGTGTGTGCGAGTTCCGTAACTGA-
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
* *
22230016 GCACTGTGTGTGCAAGATCAGTTGTTGAG
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
* * * ****
22230045 GCACTGTATGTACGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
* *
22230073 ACACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
* * **
22230102 GCACTGTGTGTGCGAGTTCCGTAGCCGA-
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
*
22230130 GCACTGTGTGTGCGAGATCAGTTGTTGAG
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
22230159 GCACTGTGTGTGCGAG
1 GCACTGTGTGTGCGAG
22230175 TTTCGTAACC
Statistics
Matches: 144, Mismatches: 40, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
28 64 0.44
29 80 0.56
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.29
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCCGTTGTTGAG
Found at i:22229998 original size:57 final size:57
Alignment explanation
Indices: 22229929--22230207 Score: 459
Period size: 57 Copynumber: 4.9 Consensus size: 57
22229919 AAGTGAACAT
*
22229929 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * *
22229986 AGGCACTGTGTGTGCGAGTTCCGTAACTGAGCACTGTGTGTGCAAGATCAGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * *
22230043 AGGCACTGTATGTACGAGTTCCGTAACCGAACACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
22230100 AGGCACTGTGTGTGCGAGTTCCGTAGCCGAGCACTGTGTGTGCGAGATCAGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
22230157 AGGCACTGTGTGTGCGAGTTTCGTAACCGAGCACTGTGTATGCGAGATCGG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGG
22230208 CGCTGTGTGT
Statistics
Matches: 203, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 203 1.00
ACGTcount: A:0.18, C:0.19, G:0.35, T:0.28
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:22230200 original size:28 final size:28
Alignment explanation
Indices: 22229931--22230202 Score: 165
Period size: 28 Copynumber: 9.6 Consensus size: 28
22229921 GTGAACATAG
* * *
22229931 GCACTGTGTGTGTGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTTCGTAGCCGA
* * **
22229959 GCACTGTGTGTGCGAG-ATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTTC-GTAGCCGA
* * *
22229987 GGCACTGTGTGTGCGAGTTCCGTAACTGA
1 -GCACTGTGTGTGCGAGTTTCGTAGCCGA
* * * **
22230016 GCACTGTGTGTGCAAG-ATCAGTTGTTGA
1 GCACTGTGTGTGCGAGTTTC-GTAGCCGA
* * * *
22230044 GGCACTGTATGTACGAGTTCCGTAACCGA
1 -GCACTGTGTGTGCGAGTTTCGTAGCCGA
* * * **
22230073 ACACTGTGTGTGCGAG-ATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTTC-GTAGCCGA
*
22230101 GGCACTGTGTGTGCGAGTTCCGTAGCCGA
1 -GCACTGTGTGTGCGAGTTTCGTAGCCGA
* * **
22230130 GCACTGTGTGTGCGAG-ATCAGTTGTTGA
1 GCACTGTGTGTGCGAGTTTC-GTAGCCGA
*
22230158 GGCACTGTGTGTGCGAGTTTCGTAACCGA
1 -GCACTGTGTGTGCGAGTTTCGTAGCCGA
*
22230187 GCACTGTGTATGCGAG
1 GCACTGTGTGTGCGAG
22230203 ATCGGCGCTG
Statistics
Matches: 179, Mismatches: 53, Indels: 24
0.70 0.21 0.09
Matches are distributed among these distances:
27 4 0.02
28 92 0.51
29 78 0.44
30 5 0.03
ACGTcount: A:0.18, C:0.19, G:0.35, T:0.29
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTTCGTAGCCGA
Found at i:22230215 original size:20 final size:20
Alignment explanation
Indices: 22230190--22230227 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
22230180 TAACCGAGCA
22230190 CTGTGTATGCGAGATCGGCG
1 CTGTGTATGCGAGATCGGCG
*
22230210 CTGTGTGTGCGAGATCGG
1 CTGTGTATGCGAGATCGG
22230228 TTGTTGAGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.18, G:0.42, T:0.26
Consensus pattern (20 bp):
CTGTGTATGCGAGATCGGCG
Found at i:22230282 original size:77 final size:77
Alignment explanation
Indices: 22230133--22230284 Score: 241
Period size: 77 Copynumber: 2.0 Consensus size: 77
22230123 TAGCCGAGCA
* * *
22230133 CTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTGTGCGAGTTTCGTAACCGAGCACTGTGTAT
1 CTGTGTGTGCGAGATCAGTTGTTGAGGCACTATGTGTGCGAGTTCCGTAACCAAGCACTGTGTAT
* *
22230198 GCGAGATCGGCG
66 ACAAGATCGGCG
* *
22230210 CTGTGTGTGCGAGATCGGTTGTTGAGGCACTATGTGTGCGAGTTCCGTAACCAAGCACTGTGTGT
1 CTGTGTGTGCGAGATCAGTTGTTGAGGCACTATGTGTGCGAGTTCCGTAACCAAGCACTGTGTAT
22230275 ACAAGATCGG
66 ACAAGATCGG
22230285 TTGTTGGGGC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
77 68 1.00
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.28
Consensus pattern (77 bp):
CTGTGTGTGCGAGATCAGTTGTTGAGGCACTATGTGTGCGAGTTCCGTAACCAAGCACTGTGTAT
ACAAGATCGGCG
Found at i:22244583 original size:94 final size:93
Alignment explanation
Indices: 22244341--22244613 Score: 288
Period size: 94 Copynumber: 2.9 Consensus size: 93
22244331 GGTAAAGTGT
* * * *
22244341 CGATGCCATGTCCCAAGCATGGTCTTACACTAACTCTCGCATATCTGTGCCGATGCCATGTCCCA
1 CGATGCCATGTCCCAAACATGGTCTTACACT-A-GCTCACATATATG-GCCGATG-CATGTCCCA
* *
22244406 GACATGGTCTTATACT-G-ACACATCTCATAGC
62 GACAT-GTCTTACACTAGCTCACATCTCATAGC
* * * * * * *
22244437 CGATG-CATGTCTCAGACAT-GTCTTACACTGGCTTACATCTCGA-GCCCGATGCATGTCCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAT--ATGGCCGATGCATGTCCCAGA
*
22244499 CATGTCTTACACTAGCTCTCATCTCA-ATGC
64 CATGTCTTACACTAGCTCACATCTCATA-GC
*
22244529 CGATGCCATGTCCCAAACATGGTTTTACACTAGCTCACATAATATGGCCGATGCATGTCCCAGAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACAT-ATATGGCCGATGCATGTCCCAGAC
22244594 ATGTCTTACACTAGCTCACA
65 ATGTCTTACACTAGCTCACA
22244614 CAAGTGACCC
Statistics
Matches: 145, Mismatches: 23, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
90 9 0.06
91 15 0.10
92 27 0.19
93 14 0.10
94 63 0.43
95 12 0.08
96 5 0.03
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (93 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATATGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCTCACATCTCATAGC
Found at i:22244612 original size:46 final size:48
Alignment explanation
Indices: 22244341--22244613 Score: 257
Period size: 46 Copynumber: 5.8 Consensus size: 48
22244331 GGTAAAGTGT
* * *
22244341 CGATGCCATGTCCCA-AGCATGGTCTTACACTAACTCTCGCATATC-TGTGC
1 CGATGCCATGTCCCAGA-CATGGTCTTACACT-A-GCTCACATCTCATG-GC
* * *
22244391 CGATGCCATGTCCCAGACATGGTCTTATACT-G-ACACATCTCATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCATGGC
* * * *
22244437 CGATG-CATGTCTCAGACAT-GTCTTACACTGGCTTACATCTCGA-GCC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTC-ATGGC
* *
22244483 CGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCATCTCAAT-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTC-ATGGC
* * *
22244529 CGATGCCATGTCCCAAACATGGTTTTACACTAGCTCACATAAT-ATGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-CTCATGGC
22244577 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA
22244614 CAAGTGACCC
Statistics
Matches: 189, Mismatches: 24, Indels: 24
0.80 0.10 0.10
Matches are distributed among these distances:
44 9 0.05
45 14 0.07
46 81 0.43
47 31 0.16
48 24 0.13
49 1 0.01
50 28 0.15
51 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCATGGC
Found at i:22251149 original size:28 final size:28
Alignment explanation
Indices: 22251107--22251164 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
22251097 CTAGTTTGTC
* *
22251107 TTATCCTAACGAAC-TTACCCTGTGTTTA
1 TTATCCCAACAAACTTTA-CCTGTGTTTA
*
22251135 TTATCCCAACAAACTTTATCTGTGTTTA
1 TTATCCCAACAAACTTTACCTGTGTTTA
22251163 TT
1 TT
22251165 GTCCTAGTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 23 0.88
29 3 0.12
ACGTcount: A:0.26, C:0.22, G:0.09, T:0.43
Consensus pattern (28 bp):
TTATCCCAACAAACTTTACCTGTGTTTA
Found at i:22254382 original size:18 final size:19
Alignment explanation
Indices: 22254350--22254385 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
22254340 TATTTTATAT
22254350 TTAAAATAATAAATATAAC
1 TTAAAATAATAAATATAAC
*
22254369 TTAAAAT-ATTAATATAA
1 TTAAAATAATAAATATAA
22254386 AAATATTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (19 bp):
TTAAAATAATAAATATAAC
Found at i:22254580 original size:78 final size:76
Alignment explanation
Indices: 22254471--22254662 Score: 223
Period size: 78 Copynumber: 2.5 Consensus size: 76
22254461 TTCAAACAAG
* *
22254471 AAAA-TCATTCTGTCAGCAAAAATCCAATAATAAAAAAA-TTTGAAACATTACTAAATAATCTCC
1 AAAATTCATTCTGTCA-AAAAAATCCAATAATAAAAAAACTTTGAAACATTACTAAATAAT-ACC
22254534 AAAGGTAAAAAAAA
64 AAAGGT-AAAAAAA
* *
22254548 AAAATTCATTCTGTCAAAAAAATTCTAATAATAAAAAAAAATCTTTGAAACATTACTGAATAATA
1 AAAATTCATTCTGTCAAAAAAA-TCCAATAAT--AAAAAAA-CTTTGAAACATTACTAAATAATA
*
22254613 CCAAAGGTTAAAAAA
62 CCAAAGGTAAAAAAA
*
22254628 AACATTC---CTGTCAAAAAAAATCCAATAATAAAAAA
1 AAAATTCATTCTGTC-AAAAAAATCCAATAATAAAAAA
22254663 TTAAAAATCG
Statistics
Matches: 101, Mismatches: 7, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
75 6 0.06
77 22 0.22
78 26 0.26
80 19 0.19
81 8 0.08
82 20 0.20
ACGTcount: A:0.56, C:0.14, G:0.06, T:0.24
Consensus pattern (76 bp):
AAAATTCATTCTGTCAAAAAAATCCAATAATAAAAAAACTTTGAAACATTACTAAATAATACCAA
AGGTAAAAAAA
Found at i:22254669 original size:82 final size:80
Alignment explanation
Indices: 22254499--22254669 Score: 188
Period size: 82 Copynumber: 2.1 Consensus size: 80
22254489 AAAATCCAAT
*
22254499 AATAAAAAAATTTGAAACATTACTAAATAATCTCCAAAGGTAAAAAAAAAAAATTCATTCTGTCA
1 AATAAAAAAATTTGAAACATTACTAAATAATCACCAAAGGTAAAAAAAAAAAATTC--TCTGTCA
*
22254564 AAAAAATTCTAATAATAA
64 AAAAAATCCTAATAA-AA
** * * *
22254582 AA-AAAAATCTTTGAAACATTACTGAATAAT-ACCAAAGGT-TAAAAAAAACATTC-CTGTCAAA
1 AATAAAAAAATTTGAAACATTACTAAATAATCACCAAAGGTAAAAAAAAAAAATTCTCTGTC-AA
22254643 AAAAATCCAATAATAAAA
65 AAAAATCC--TAATAAAA
*
22254661 AATTAAAAA
1 AATAAAAAA
22254670 TCGAAAATCA
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
77 5 0.07
78 9 0.12
79 4 0.05
80 22 0.29
81 8 0.11
82 25 0.33
83 2 0.03
ACGTcount: A:0.58, C:0.12, G:0.05, T:0.25
Consensus pattern (80 bp):
AATAAAAAAATTTGAAACATTACTAAATAATCACCAAAGGTAAAAAAAAAAAATTCTCTGTCAAA
AAAATCCTAATAAAA
Found at i:22254932 original size:17 final size:17
Alignment explanation
Indices: 22254910--22254953 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 17
22254900 GCTAACAAAT
22254910 AATTTAAAATT-AATAAA
1 AATTTAAAATTCAA-AAA
22254927 AATTTAAAATTCAAAAA
1 AATTTAAAATTCAAAAA
22254944 AATTATAAAA
1 AATT-TAAAA
22254954 AGTAAATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 18 0.72
18 7 0.28
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (17 bp):
AATTTAAAATTCAAAAA
Found at i:22259727 original size:21 final size:21
Alignment explanation
Indices: 22259680--22259719 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
22259670 AATCAAATAC
* *
22259680 TCAATACTTAATCCTCAATCA
1 TCAATTCTCAATCCTCAATCA
*
22259701 TAAATTCTCAATCCTCAAT
1 TCAATTCTCAATCCTCAAT
22259720 TTTCAATTTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.35
Consensus pattern (21 bp):
TCAATTCTCAATCCTCAATCA
Found at i:22259789 original size:20 final size:20
Alignment explanation
Indices: 22259772--22259815 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 20
22259762 TAATTCTTTT
22259772 TTTTAATTTTATTCTCTTTAA
1 TTTT-ATTTTATTCTCTTTAA
22259793 TTTTATTTTATTCT-TTATAA
1 TTTTATTTTATTCTCTT-TAA
22259813 TTT
1 TTT
22259816 ATAAATTGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 2 0.09
20 16 0.73
21 4 0.18
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTTATTTTATTCTCTTTAA
Found at i:22260347 original size:63 final size:63
Alignment explanation
Indices: 22260248--22260426 Score: 241
Period size: 63 Copynumber: 2.8 Consensus size: 63
22260238 TGTTCTTACG
* * * * * * *
22260248 TAGTTTATTTGACACAAGCATCACATCACGCGCAATCATTCCTTACATCAACACCTTCAGCTC
1 TAGTTTATTTTACACAAGCACCACAACACGCACAATCATTCCATACATCAACACATTCAGCAC
* * *
22260311 TAGTTTATTTTACACAAACACCACAACACGCACAATCATTCCATGCATCAACATATTCAGCAC
1 TAGTTTATTTTACACAAGCACCACAACACGCACAATCATTCCATACATCAACACATTCAGCAC
* * *
22260374 CAGTTTATTTTACACAAGCACCACAACATGCACAATCATTCCCTACATCAACA
1 TAGTTTATTTTACACAAGCACCACAACACGCACAATCATTCCATACATCAACA
22260427 AAATCTCTAG
Statistics
Matches: 101, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
63 101 1.00
ACGTcount: A:0.35, C:0.31, G:0.07, T:0.26
Consensus pattern (63 bp):
TAGTTTATTTTACACAAGCACCACAACACGCACAATCATTCCATACATCAACACATTCAGCAC
Found at i:22262215 original size:30 final size:30
Alignment explanation
Indices: 22262181--22262240 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
22262171 CATAAACAAA
22262181 AATAAATCTACAAACTTTTAATTTTCAACC
1 AATAAATCTACAAACTTTTAATTTTCAACC
22262211 AATAAATCTACAAACTTTTAATTTTCAACC
1 AATAAATCTACAAACTTTTAATTTTCAACC
22262241 GTAAGAAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (30 bp):
AATAAATCTACAAACTTTTAATTTTCAACC
Found at i:22275211 original size:24 final size:24
Alignment explanation
Indices: 22275127--22275204 Score: 115
Period size: 24 Copynumber: 3.2 Consensus size: 24
22275117 AATCGAATTT
*
22275127 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTCATCACACTC
22275151 GCACACATAGTGCTCATCACACTC
1 GCACACATAGTGCTCATCACACTC
22275175 GCACACATAGTGC-CATAGCACAC-C
1 GCACACATAGTGCTCAT--CACACTC
22275199 GCACAC
1 GCACAC
22275205 TCAGTGCATT
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
23 3 0.06
24 43 0.84
25 5 0.10
ACGTcount: A:0.29, C:0.38, G:0.15, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTCATCACACTC
Found at i:22278381 original size:30 final size:30
Alignment explanation
Indices: 22278346--22278405 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
22278336 TATTTTATTA
*
22278346 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
* *
22278376 TTAATTTTATTATTATTTTAGAGGTATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
22278406 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAAAGGCATTTG
Found at i:22280630 original size:25 final size:26
Alignment explanation
Indices: 22280572--22280641 Score: 106
Period size: 25 Copynumber: 2.7 Consensus size: 26
22280562 ACATTTCAAC
* **
22280572 CCACAGCTCATGTGAGTAGGCCCATT
1 CCACAGCTCATGTGAGCATACCCATT
22280598 CCACAGCTCATGTGAGCATACCC-TT
1 CCACAGCTCATGTGAGCATACCCATT
22280623 CCACAGCTCATGTGAGCAT
1 CCACAGCTCATGTGAGCAT
22280642 CATTGTAAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 21 0.51
26 20 0.49
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (26 bp):
CCACAGCTCATGTGAGCATACCCATT
Found at i:22285245 original size:20 final size:21
Alignment explanation
Indices: 22285200--22285245 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
22285190 CTGTATCTTG
*
22285200 GAAATTTTTTAAAATTTTGCA
1 GAAAATTTTTAAAATTTTGCA
22285221 GAAAATTTTTAAAATTTTGCA
1 GAAAATTTTTAAAATTTTGCA
22285242 -AAAA
1 GAAAA
22285246 GTTCTTTGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.46, C:0.04, G:0.09, T:0.41
Consensus pattern (21 bp):
GAAAATTTTTAAAATTTTGCA
Found at i:22286193 original size:13 final size:13
Alignment explanation
Indices: 22286144--22286208 Score: 76
Period size: 13 Copynumber: 5.0 Consensus size: 13
22286134 CATCTATTAC
*
22286144 CATATAACCAATT
1 CATATAACCATTT
*
22286157 CATTTAACCATTT
1 CATATAACCATTT
* * *
22286170 TATGTAGCCATTT
1 CATATAACCATTT
22286183 CATATAACCATTT
1 CATATAACCATTT
*
22286196 CGTATAACCATTT
1 CATATAACCATTT
22286209 TAACAAAACT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.40
Consensus pattern (13 bp):
CATATAACCATTT
Found at i:22288080 original size:85 final size:85
Alignment explanation
Indices: 22287925--22288083 Score: 255
Period size: 85 Copynumber: 1.9 Consensus size: 85
22287915 ATGGGCTGTT
* * * * *
22287925 ATATTTACAGTTATTGCCACTTGTTGTGAGTGCACAACATATTTGTAGATTAAACAAATTGTCAC
1 ATATTTACAATTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCAC
*
22287990 TTGGTTCATGATCGAACCAC
66 ATGGTTCATGATCGAACCAC
*
22288010 ATATTTGCAATTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCAC
1 ATATTTACAATTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCAC
22288075 ATGGTTCAT
66 ATGGTTCAT
22288084 AATCAAAGTA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 67 1.00
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (85 bp):
ATATTTACAATTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCAC
ATGGTTCATGATCGAACCAC
Found at i:22288723 original size:29 final size:28
Alignment explanation
Indices: 22288609--22288776 Score: 189
Period size: 29 Copynumber: 6.0 Consensus size: 28
22288599 AATTTTGGGC
* * *
22288609 AAAATTGTAAAATCTAAAAGATAGAGG-C
1 AAAATTATAAAATCTAAAAAATAG-GGAA
* *
22288637 AAAACTATAAAATCTGAAAAATAGGGAA
1 AAAATTATAAAATCTAAAAAATAGGGAA
** *
22288665 AAAA-CGTAAAATCT-AAAAATAGGGGA
1 AAAATTATAAAATCTAAAAAATAGGGAA
22288691 AAAATTATAAAATCTAAAAAATAGAGGAA
1 AAAATTATAAAATCTAAAAAATAG-GGAA
*
22288720 AAAACTATAAAATCTAAAAAATAGGGAA
1 AAAATTATAAAATCTAAAAAATAGGGAA
* *
22288748 CAAAATTGTAAAATCTAAAAAAGAGGGAA
1 -AAAATTATAAAATCTAAAAAATAGGGAA
22288777 CACACGGCCG
Statistics
Matches: 120, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
26 15 0.12
27 18 0.15
28 36 0.30
29 51 0.43
ACGTcount: A:0.60, C:0.07, G:0.15, T:0.18
Consensus pattern (28 bp):
AAAATTATAAAATCTAAAAAATAGGGAA
Found at i:22293053 original size:41 final size:40
Alignment explanation
Indices: 22292996--22293074 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 40
22292986 CATGAATTTA
22292996 GGAGTAGATTTAGGTTTAGTTTAATTCTTTTAGTTTATTAT
1 GGAGTAGATTTAGGTTTAGTTTAATT-TTTTAGTTTATTAT
*
22293037 GGAGTAGGTTTAGGTTTAGTTTAATTTTTTAGTTTATT
1 GGAGTAGATTTAGGTTTAGTTTAATTTTTTAGTTTATT
22293075 GTTACTATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
40 12 0.32
41 25 0.68
ACGTcount: A:0.23, C:0.01, G:0.22, T:0.54
Consensus pattern (40 bp):
GGAGTAGATTTAGGTTTAGTTTAATTTTTTAGTTTATTAT
Found at i:22302156 original size:22 final size:24
Alignment explanation
Indices: 22302094--22302159 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
22302084 TTCCTAGGTA
* * *
22302094 AAATAAATTATACTAATAAATGCT
1 AAATATATTATACAAATAAATACT
22302118 AAATATATTATACAAATAAATACT
1 AAATATATTATACAAATAAATACT
*
22302142 AAATCT-TT-TACAAATAAA
1 AAATATATTATACAAATAAA
22302160 ATATATTTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.26
23 2 0.05
24 26 0.68
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATATATTATACAAATAAATACT
Found at i:22309864 original size:7 final size:7
Alignment explanation
Indices: 22309852--22309881 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
22309842 AGTGAGCATT
22309852 ATATGAG
1 ATATGAG
22309859 ATATGAG
1 ATATGAG
22309866 ATATGAG
1 ATATGAG
22309873 AT-TGAG
1 ATATGAG
22309879 ATA
1 ATA
22309882 GCTTCAGCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.43, C:0.00, G:0.27, T:0.30
Consensus pattern (7 bp):
ATATGAG
Found at i:22317155 original size:47 final size:45
Alignment explanation
Indices: 22317039--22317206 Score: 162
Period size: 46 Copynumber: 3.7 Consensus size: 45
22317029 GATGAGGGCT
* ** * *
22317039 AGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATGA-GTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCC-TAAGA-GATGAGCC
*
22317085 AGAGTAAGACATGTCTGGGACATGCATCAGCCTCGACAGAGAT-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCT--A-AGAGATGAGCC
* * * * *
22317132 AGTGTAAGACGTGTCTGGGACATGCATC-GGCTAAGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTAAGAGATGAGCC
*
22317176 AGTGTAAGACATGTTTGGGACATGCATCAGC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC
22317207 AGGCATACAT
Statistics
Matches: 101, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
44 29 0.29
45 2 0.02
46 33 0.33
47 31 0.31
48 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTAAGAGATGAGCC
Found at i:22318742 original size:18 final size:18
Alignment explanation
Indices: 22318719--22318757 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
22318709 AGTATGGGCC
*
22318719 AAGGCGGAGGGGTTAGGG
1 AAGGCGGAGGGGCTAGGG
22318737 AAGGCGGAGGGGCTAGGG
1 AAGGCGGAGGGGCTAGGG
22318755 AAG
1 AAG
22318758 CCTACCTCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.08, G:0.59, T:0.08
Consensus pattern (18 bp):
AAGGCGGAGGGGCTAGGG
Found at i:22327824 original size:46 final size:46
Alignment explanation
Indices: 22327769--22327942 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
22327759 TATTTGGGCA
22327769 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAATG
* *** * *
22327815 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GAC--GCGAATG
* *
22327862 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAATG
* * *
22327908 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
22327943 TGGCGGGTTA
Statistics
Matches: 105, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 65 0.62
47 31 0.30
48 2 0.02
49 2 0.02
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAATG
Found at i:22327924 original size:93 final size:93
Alignment explanation
Indices: 22327765--22327936 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
22327755 AGGATATTTG
**
22327765 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAATGCCCGAACTCGTTGAG
22327830 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
22327858 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAATGCCCGAACTCGTTGAG
*
22327923 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
22327937 ACTTATTGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:22334233 original size:21 final size:21
Alignment explanation
Indices: 22334204--22334257 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
22334194 CGGGGTCGGG
*
22334204 ACACAGGCGTGTCCAAAATCC
1 ACACGGGCGTGTCCAAAATCC
22334225 ACACGGGCGTGTCCAAAATCC
1 ACACGGGCGTGTCCAAAATCC
22334246 ACACGGGCGTGT
1 ACACGGGCGTGT
22334258 GACACCTGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.28, C:0.31, G:0.26, T:0.15
Consensus pattern (21 bp):
ACACGGGCGTGTCCAAAATCC
Found at i:22351026 original size:28 final size:28
Alignment explanation
Indices: 22350986--22351041 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
22350976 TTTCCAAAGG
*
22350986 ATGTTAACTTTTAATACACTGATACTAA
1 ATGTTAACTTTTAATACACCGATACTAA
22351014 ATGTTAACTTTTAATACACCGATACTAA
1 ATGTTAACTTTTAATACACCGATACTAA
22351042 GCTTGCTAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.38
Consensus pattern (28 bp):
ATGTTAACTTTTAATACACCGATACTAA
Found at i:22351081 original size:38 final size:38
Alignment explanation
Indices: 22351039--22351183 Score: 184
Period size: 38 Copynumber: 3.8 Consensus size: 38
22351029 ACACCGATAC
* *
22351039 TAAGCTTGCTAGGCACCAAGCCTGAAAAACACCAGCAA
1 TAAGCCTGCTAGGCACGAAGCCTGAAAAACACCAGCAA
* * *
22351077 TAAGCCTGCCAGGCGCGAAGCCTGAATAACACCAGCAA
1 TAAGCCTGCTAGGCACGAAGCCTGAAAAACACCAGCAA
*
22351115 TAAGCCTGCTAGGCATGAAGCCT-AAATAACACCAGCAA
1 TAAGCCTGCTAGGCACGAAGCCTGAAA-AACACCAGCAA
* * * *
22351153 TAAGCCTACTAGGCACAAAGCCCGAATAACA
1 TAAGCCTGCTAGGCACGAAGCCTGAAAAACA
22351184 ATATAATTCA
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
37 2 0.02
38 87 0.96
39 2 0.02
ACGTcount: A:0.39, C:0.29, G:0.19, T:0.13
Consensus pattern (38 bp):
TAAGCCTGCTAGGCACGAAGCCTGAAAAACACCAGCAA
Found at i:22352494 original size:16 final size:15
Alignment explanation
Indices: 22352451--22352490 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
22352441 TTTTTGTACT
22352451 TTTTATTTTATTCCA
1 TTTTATTTTATTCCA
*
22352466 TTTTACTTTTATTCTA
1 TTTTA-TTTTATTCCA
22352482 TTTTATTTT
1 TTTTATTTT
22352491 TATTTTTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTTATTTTATTCCA
Found at i:22356316 original size:79 final size:79
Alignment explanation
Indices: 22356223--22356445 Score: 292
Period size: 79 Copynumber: 2.8 Consensus size: 79
22356213 GCTCCTCGTT
* *
22356223 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAA-GCCTTCGGGACTTAGCCCGG
*
22356288 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
*
22356303 C-AATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAAGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAAGCCTTCGGGACTTAGCCCGG
*
22356365 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * * * *
22356380 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAAGCCTTCGGGACTTAGCCCG
22356444 GA
64 GA
22356446 CATCATTCAA
Statistics
Matches: 126, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 27 0.21
78 31 0.25
79 54 0.43
80 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAAGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:22356445 original size:40 final size:40
Alignment explanation
Indices: 22356223--22356445 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
22356213 GCTCCTCGTT
* *
22356223 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
22356263 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
22356303 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
22356342 CAAA-GCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
22356380 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
22356421 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22356446 CATCATTCAA
Statistics
Matches: 162, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
38 27 0.17
39 54 0.33
40 69 0.43
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:22360450 original size:79 final size:81
Alignment explanation
Indices: 22360326--22360509 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
22360316 GCTACTCGTT
* *
22360326 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTC-GGATCTTAACCCG
* *
22360389 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
22360405 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAC-AATGCCTTCGGATCTTAACCCG
* *
22360468 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
22360485 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22360510 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 24 0.26
79 48 0.53
80 19 0.21
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:22360509 original size:40 final size:40
Alignment explanation
Indices: 22360307--22360509 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
22360297 CGGAATTTAA
** *
22360307 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22360347 CCGGTTATAGTAACTCGCAC-AATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
22360386 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22360425 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
22360465 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
22360505 CCGGA
1 CCGGA
22360510 CATCATTCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 68 0.49
40 57 0.41
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:22368384 original size:79 final size:82
Alignment explanation
Indices: 22368273--22368457 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
22368263 GCTACTCGTT
* *
22368273 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
22368336 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
22368353 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
22368416 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
22368433 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22368458 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:22368457 original size:40 final size:40
Alignment explanation
Indices: 22368254--22368457 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
22368244 CGGAATTTAA
** *
22368254 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22368294 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
22368334 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22368373 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
22368413 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
22368453 CCGGA
1 CCGGA
22368458 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:22374904 original size:138 final size:137
Alignment explanation
Indices: 22374741--22375165 Score: 602
Period size: 138 Copynumber: 3.1 Consensus size: 137
22374731 AAAAAAAAAG
* * *
22374741 AATTATATTCTTTCCAAAAGAATATTAATTTTCATATCTTTTATATTTTTACTGGAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAA-TTTCATATCTTTTATATTTTGACCGAAATTAATTAA
* * *
22374806 TATAATTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
65 TATAAATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
22374871 CATATATT
130 CATATATT
* * *
22374879 AATTATATTATTTCCAAAAGAATATTAATTTC-TACTTTTTTTATATATTGACCGAAATTAATTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCATA--TCTTTTATATTTTGACCG--A--AATTA
* * * *
22374943 ATTAATATAAATATTTATATAAATAAATTCAGTAAAACATATATAATTAATATTTTGTATGAATC
60 ATTAATATAAATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATC
22375008 AAATTCATATATT
125 AAATTCATATATT
* *
22375021 AATTATATTCTTTCCAAAAGAATATTAAAATTCATTTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATT-AATTTCATATCTTTTATATTTTGACCGAAATTAATTAA
* *
22375086 TATAACA-ATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATTAAAC
65 TATAA-ATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
22375150 TCATATATT
129 TCATATATT
22375159 AATTATA
1 AATTATA
22375166 ACTATGTTAT
Statistics
Matches: 254, Mismatches: 24, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
136 2 0.01
137 4 0.02
138 123 0.48
139 1 0.00
140 1 0.00
142 117 0.46
143 5 0.02
144 1 0.00
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (137 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCATATCTTTTATATTTTGACCGAAATTAATTAAT
ATAAATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTC
ATATATT
Found at i:22375000 original size:142 final size:142
Alignment explanation
Indices: 22374741--22375165 Score: 573
Period size: 142 Copynumber: 3.0 Consensus size: 142
22374731 AAAAAAAAAG
* ** * * * * *
22374741 AATTATATTCTTTCCAAAAGAATATTAATTTTCATATCTTTTATATTTTTACTG----GAATTAA
1 AATTATATTATTTCCAAAAGAATATTAAAATTCATTTCTTTTATATATTGACCGAAATTAATTAA
* * *
22374802 TTAATATAATTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCA
66 TTAATATAAATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCA
22374867 AATTCATATATT
131 AATTCATATATT
*
22374879 AATTATATTATTTCCAAAAGAATATT-AATTTCTACTTT-TTTTATATATTGACCGAAATTAATT
1 AATTATATTATTTCCAAAAGAATATTAAAATTC-A-TTTCTTTTATATATTGACCGAAATTAATT
* * * *
22374942 AATTAATATAAATATTTATATAAATAAATTCAGTAAAACATATATAATTAATATTTTGTATGAAT
64 AATTAATATAAATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAAT
22375007 CAAATTCATATATT
129 CAAATTCATATATT
* *
22375021 AATTATATTCTTTCCAAAAGAATATTAAAATTCATTTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTATTTCCAAAAGAATATTAAAATTCATTTCTTTTATATATTGACCGAAATTAATTAA
* *
22375086 -T-ATA-ACA-ATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATTA
66 TTAATATAAATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCA
*
22375147 AACTCATATATT
131 AATTCATATATT
22375159 AATTATA
1 AATTATA
22375166 ACTATGTTAT
Statistics
Matches: 255, Mismatches: 24, Indels: 16
0.86 0.08 0.05
Matches are distributed among these distances:
137 5 0.02
138 106 0.42
139 4 0.02
140 3 0.01
141 4 0.02
142 128 0.50
143 5 0.02
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (142 bp):
AATTATATTATTTCCAAAAGAATATTAAAATTCATTTCTTTTATATATTGACCGAAATTAATTAA
TTAATATAAATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCA
AATTCATATATT
Found at i:22380660 original size:45 final size:45
Alignment explanation
Indices: 22380606--22380840 Score: 301
Period size: 45 Copynumber: 5.2 Consensus size: 45
22380596 TCATTAAGAC
* *
22380606 TACGAGCAGTGGAGCAGGTACATTCAGCTCTCAATTCATTCAACT
1 TACGAGCAGTGGGGCTGGTACATTCAGCTCTCAATTCATTCAACT
* * *
22380651 TACTAGCAGTGGGGCTGGTACATTCAACTCTCAATTCGTTCAACT
1 TACGAGCAGTGGGGCTGGTACATTCAGCTCTCAATTCATTCAACT
* * ** * *
22380696 TACAAGCAATGAAGCTGGTTCATTCAGCTCTCAATTCATTCAACC
1 TACGAGCAGTGGGGCTGGTACATTCAGCTCTCAATTCATTCAACT
* *
22380741 TGCGAGCAGTGGGGCCGGTACATTCAGCTCTCAATTCATTCAACT
1 TACGAGCAGTGGGGCTGGTACATTCAGCTCTCAATTCATTCAACT
* * * *
22380786 TAGGAGCAGTGGGGCTGGTACATTCAACTCTCATTTCATT-AAGCC
1 TACGAGCAGTGGGGCTGGTACATTCAGCTCTCAATTCATTCAA-CT
22380831 TACGAGCAGT
1 TACGAGCAGT
22380841 AGGACAGCTA
Statistics
Matches: 161, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
44 2 0.01
45 159 0.99
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (45 bp):
TACGAGCAGTGGGGCTGGTACATTCAGCTCTCAATTCATTCAACT
Found at i:22391652 original size:13 final size:13
Alignment explanation
Indices: 22391634--22391658 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22391624 AAAAGAGAAG
22391634 AAATTCAAAAAAC
1 AAATTCAAAAAAC
22391647 AAATTCAAAAAA
1 AAATTCAAAAAA
22391659 TTGAAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.12, G:0.00, T:0.16
Consensus pattern (13 bp):
AAATTCAAAAAAC
Found at i:22391728 original size:13 final size:13
Alignment explanation
Indices: 22391662--22391729 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 13
22391652 CAAAAAATTG
22391662 AAAAAA-AG-GAA
1 AAAAAAGAGTGAA
22391673 AAAAAAGAAGTGACA
1 AAAAAAG-AGTGA-A
*
22391688 AAAAAATCGAGTTAA
1 AAAAAA--GAGTGAA
*
22391703 AAAAAAGA-AGAA
1 AAAAAAGAGTGAA
22391715 AAAAAAGAGTGAA
1 AAAAAAGAGTGAA
22391728 AA
1 AA
22391730 GTCTTGCGAG
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
11 6 0.13
12 10 0.22
13 9 0.20
14 2 0.04
15 14 0.30
16 4 0.09
17 1 0.02
ACGTcount: A:0.72, C:0.03, G:0.18, T:0.07
Consensus pattern (13 bp):
AAAAAAGAGTGAA
Found at i:22392734 original size:6 final size:6
Alignment explanation
Indices: 22392725--22392841 Score: 58
Period size: 6 Copynumber: 19.2 Consensus size: 6
22392715 AAAAGAGATT
** * * **
22392725 GAAAAA GAAATT GAAAGAA AAAAAA GAAAAC G-AAAA -AAAAA GAAATT
1 GAAAAA GAAAAA GAAA-AA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA
* ** ** * *
22392772 GCAAAA GAAAAA GAAATC GAAAAA GTGAGA GAAAAA GAAAAT GAAGAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA G-A-AAAA
*
22392822 GAAAATT GAAAAA GAAAAA G
1 GAAAA-A GAAAAA GAAAAA G
22392842 CGAAAAAAGA
Statistics
Matches: 77, Mismatches: 28, Indels: 12
0.66 0.24 0.10
Matches are distributed among these distances:
5 7 0.09
6 56 0.73
7 10 0.13
8 4 0.05
ACGTcount: A:0.71, C:0.03, G:0.19, T:0.08
Consensus pattern (6 bp):
GAAAAA
Found at i:22392794 original size:34 final size:35
Alignment explanation
Indices: 22392726--22392795 Score: 106
Period size: 34 Copynumber: 2.0 Consensus size: 35
22392716 AAAGAGATTG
22392726 AAAAAGAAATTGAAAGAAAAAAAAGAAAACGAAAA
1 AAAAAGAAATTGAAAGAAAAAAAAGAAAACGAAAA
* * *
22392761 AAAAAGAAATTGCAA-AAGAAAAAGAAATCGAAAA
1 AAAAAGAAATTGAAAGAAAAAAAAGAAAACGAAAA
22392795 A
1 A
22392796 GTGAGAGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 18 0.56
35 14 0.44
ACGTcount: A:0.74, C:0.04, G:0.14, T:0.07
Consensus pattern (35 bp):
AAAAAGAAATTGAAAGAAAAAAAAGAAAACGAAAA
Found at i:22392795 original size:18 final size:18
Alignment explanation
Indices: 22392725--22392796 Score: 76
Period size: 18 Copynumber: 4.1 Consensus size: 18
22392715 AAAAGAGATT
*
22392725 GAAAAAGAAATTGAAAGAA
1 GAAAAAGAAATCGAAA-AA
* *
22392744 AAAAAAGAAAACG-AAAA
1 GAAAAAGAAATCGAAAAA
* *
22392761 -AAAAAGAAATTGCAAAA
1 GAAAAAGAAATCGAAAAA
22392778 GAAAAAGAAATCGAAAAA
1 GAAAAAGAAATCGAAAAA
22392796 G
1 G
22392797 TGAGAGAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
16 10 0.23
17 6 0.14
18 18 0.41
19 10 0.23
ACGTcount: A:0.72, C:0.04, G:0.17, T:0.07
Consensus pattern (18 bp):
GAAAAAGAAATCGAAAAA
Found at i:22392823 original size:14 final size:13
Alignment explanation
Indices: 22392802--22392839 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
22392792 AAAAGTGAGA
22392802 GAAAAAGAAAA-T
1 GAAAAAGAAAATT
22392814 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAATT
22392829 GAAAAAGAAAA
1 GAAAAAGAAAA
22392840 AGCGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 10 0.43
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (13 bp):
GAAAAAGAAAATT
Found at i:22392853 original size:21 final size:21
Alignment explanation
Indices: 22392803--22392853 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
22392793 AAAGTGAGAG
*
22392803 AAAAAGAAAATGAAGAAAAGA
1 AAAAAGAAAAAGAAGAAAAGA
** *
22392824 AAATTGAAAAAGAA-AAAGCGA
1 AAAAAGAAAAAGAAGAAA-AGA
22392845 AAAAAGAAA
1 AAAAAGAAA
22392854 TTGAAAGAGA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAAGAAGAAAAGA
Found at i:22392893 original size:33 final size:33
Alignment explanation
Indices: 22392856--22392918 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
22392846 AAAAGAAATT
22392856 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTGT-AAAAGAAA-CAAGTGAAAAA
*
22392889 GAAAGAGAGTCTGTAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTGTAAAAGAAACAAGTGAA
22392919 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.54, C:0.06, G:0.27, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTGTAAAAGAAACAAGTGAAAAA
Found at i:22401603 original size:47 final size:44
Alignment explanation
Indices: 22401493--22401608 Score: 126
Period size: 44 Copynumber: 2.6 Consensus size: 44
22401483 TGTGTGTGCT
* * *
22401493 GATGCATGTCCCAGACATGTCTTACACTAGTACAACTATTAGCC
1 GATGCATGTCCCAGACACGTCTTACACGAGTACAACTATGAGCC
* * * *
22401537 AATGCGTGTCCCAGGCACGTCTTACACGAGCTATC-TCTATCGAGGCC
1 GATGCATGTCCCAGACACGTCTTACACGAG-TA-CAACTAT-GA-GCC
22401584 GATGCATGTCCCAGACACGTCTTAC
1 GATGCATGTCCCAGACACGTCTTAC
22401609 TCTGGCACTC
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
44 25 0.43
45 6 0.10
46 2 0.03
47 25 0.43
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (44 bp):
GATGCATGTCCCAGACACGTCTTACACGAGTACAACTATGAGCC
Found at i:22401639 original size:47 final size:47
Alignment explanation
Indices: 22401588--22401761 Score: 176
Period size: 47 Copynumber: 3.7 Consensus size: 47
22401578 GAGGCCGATG
* * * *
22401588 CATGTCCCAGACA-CGTCTTACTCTGGCACTCATCTCTGTGCCGACGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCATCT-TGTGCCGAAGC
* * *
22401635 CATGTCCCAGACATGGTTTTACACTGGCTCTCATAATATG-GCTGAAG-
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCAT-CT-TGTGCCGAAGC
* * * * *
22401682 CATGTCCCAAACAT-GTCTTACACTAGCCCTCATCTGGATGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCATCTTG-TGCCGAAGC
22401729 CATGTCCCAGACATGGTCTTACACTGGCTCTCA
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCA
22401762 AATCACCCAA
Statistics
Matches: 102, Mismatches: 19, Indels: 11
0.77 0.14 0.08
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 21 0.21
47 39 0.38
48 37 0.36
49 3 0.03
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCTCATCTTGTGCCGAAGC
Found at i:22401714 original size:94 final size:94
Alignment explanation
Indices: 22401587--22401761 Score: 262
Period size: 94 Copynumber: 1.9 Consensus size: 94
22401577 CGAGGCCGAT
* * * *
22401587 GCATGTCCCAGACACGTCTTACTCTGGCACTCATCTCTG-TGCCGACGCCATGTCCCAGACATGG
1 GCATGTCCCAAACACGTCTTACACTAGCACTCATCT-GGATGCCGACGCCATGTCCCAGACATGG
*
22401651 TTTTACACTGGCTCTCATAATATGGCTGAA
65 TCTTACACTGGCTCTCATAATATGGCTGAA
* * *
22401681 GCATGTCCCAAACATGTCTTACACTAGCCCTCATCTGGATGCCGATGCCATGTCCCAGACATGGT
1 GCATGTCCCAAACACGTCTTACACTAGCACTCATCTGGATGCCGACGCCATGTCCCAGACATGGT
22401746 CTTACACTGGCTCTCA
66 CTTACACTGGCTCTCA
22401762 AATCACCCAA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
93 1 0.01
94 71 0.99
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (94 bp):
GCATGTCCCAAACACGTCTTACACTAGCACTCATCTGGATGCCGACGCCATGTCCCAGACATGGT
CTTACACTGGCTCTCATAATATGGCTGAA
Found at i:22409951 original size:14 final size:14
Alignment explanation
Indices: 22409929--22409961 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
22409919 TATTTTCCTC
*
22409929 TATCCTATTCTTTA
1 TATCTTATTCTTTA
22409943 TATCTTATTCTTTA
1 TATCTTATTCTTTA
22409957 TATCT
1 TATCT
22409962 CTTTATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.21, C:0.18, G:0.00, T:0.61
Consensus pattern (14 bp):
TATCTTATTCTTTA
Found at i:22413018 original size:93 final size:93
Alignment explanation
Indices: 22412905--22413076 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
22412895 CGCCCATAAG
* *
22412905 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCA
22412970 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
22412998 CGAACTCGGACTCAACTCAACGAGTTCGGATATTCGAATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCA
22413063 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
22413077 TCAATCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:22413073 original size:46 final size:46
Alignment explanation
Indices: 22412898--22413074 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
22412888 TGTAACCCGC
* ** *
22412898 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATATTCGAAT
* ** *
22412944 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAT-ATTCG--A-AT
*
22412994 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGATATTCGAAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATATTCGAAT
*
22413037 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAT
22413075 GCTCAATCAT
Statistics
Matches: 109, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 2 0.02
44 2 0.02
45 2 0.02
46 66 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATATTCGAAT
Found at i:22417288 original size:20 final size:20
Alignment explanation
Indices: 22417259--22417303 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
22417249 AGCACATGTA
* *
22417259 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
22417279 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
22417299 TTCAT
1 TTCAT
22417304 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:22420176 original size:46 final size:44
Alignment explanation
Indices: 22420119--22420294 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 44
22420109 TATTTGGGCA
22420119 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* *** * *
22420165 TCCAAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAG
* *
22420212 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* * **
22420258 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22420295 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.61
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAG
Found at i:22420237 original size:20 final size:20
Alignment explanation
Indices: 22420212--22420283 Score: 54
Period size: 20 Copynumber: 3.3 Consensus size: 20
22420202 TAACTAGGCA
22420212 TCCGAGCTCGTTGAGTTGAG
1 TCCGAGCTCGTTGAGTTGAG
* * *
22420232 TCCGAGTTCACTTGTGGATGTGAACG
1 TCCGAGCTC-GTTG-AG-T-TG-A-G
*
22420258 CCCGAGCTCGTTGAGTTGAG
1 TCCGAGCTCGTTGAGTTGAG
22420278 TCCGAG
1 TCCGAG
22420284 TTTGCTTATG
Statistics
Matches: 38, Mismatches: 8, Indels: 12
0.66 0.14 0.21
Matches are distributed among these distances:
20 14 0.37
21 4 0.11
22 3 0.08
23 2 0.05
24 3 0.08
25 4 0.11
26 8 0.21
ACGTcount: A:0.17, C:0.22, G:0.33, T:0.28
Consensus pattern (20 bp):
TCCGAGCTCGTTGAGTTGAG
Found at i:22420274 original size:93 final size:93
Alignment explanation
Indices: 22420115--22420285 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
22420105 AGGATATTTG
* *
22420115 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
22420180 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * * *
22420208 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGTGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
22420273 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
22420286 TGCTTATGGG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:22422225 original size:23 final size:23
Alignment explanation
Indices: 22422195--22422241 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
22422185 AACTATATAT
*
22422195 TCCTTACCCAATTTAGGCTGGAC
1 TCCTTACCCAATTCAGGCTGGAC
*
22422218 TCCTTACCCGATTCAGGCTGGAC
1 TCCTTACCCAATTCAGGCTGGAC
22422241 T
1 T
22422242 AATACAGGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.19, C:0.32, G:0.19, T:0.30
Consensus pattern (23 bp):
TCCTTACCCAATTCAGGCTGGAC
Found at i:22427968 original size:16 final size:16
Alignment explanation
Indices: 22427947--22427978 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22427937 TGAGATAGCT
*
22427947 CGTTGATAGTGTGAGG
1 CGTTGATAATGTGAGG
22427963 CGTTGATAATGTGAGG
1 CGTTGATAATGTGAGG
22427979 TGATCTCCGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.06, G:0.41, T:0.31
Consensus pattern (16 bp):
CGTTGATAATGTGAGG
Found at i:22430237 original size:26 final size:26
Alignment explanation
Indices: 22430207--22430259 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22430197 ATCATAACAA
*
22430207 TAAGAACTCGGCCTACTCATATAAGT
1 TAAGAACTCGACCTACTCATATAAGT
22430233 TAAGAACTCGACCTACTCATATAAGT
1 TAAGAACTCGACCTACTCATATAAGT
22430259 T
1 T
22430260 TTCTTGTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (26 bp):
TAAGAACTCGACCTACTCATATAAGT
Found at i:22430437 original size:45 final size:45
Alignment explanation
Indices: 22430388--22430478 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
22430378 TTAAGAAAAG
* *
22430388 AAAAAAATTATTGTTGTTGCATGGTGCTTGGATTATATTAATACT
1 AAAAAAATTATTCTTGTTGCATGGTGCTTGGATTATATTAAAACT
22430433 AAAAAAATTATTCTTGTTGCATGGTGCTTGGATTATATTAAAACT
1 AAAAAAATTATTCTTGTTGCATGGTGCTTGGATTATATTAAAACT
22430478 A
1 A
22430479 TGAATAGCGA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.35, C:0.08, G:0.16, T:0.41
Consensus pattern (45 bp):
AAAAAAATTATTCTTGTTGCATGGTGCTTGGATTATATTAAAACT
Found at i:22433298 original size:40 final size:40
Alignment explanation
Indices: 22433189--22433325 Score: 201
Period size: 39 Copynumber: 3.5 Consensus size: 40
22433179 CGGATGATAA
* *
22433189 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
22433229 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
22433268 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
22433308 CC-GGCTAAGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
22433326 TACTTGGTTT
Statistics
Matches: 91, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
39 53 0.58
40 38 0.42
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:22441245 original size:38 final size:39
Alignment explanation
Indices: 22441093--22441347 Score: 253
Period size: 38 Copynumber: 6.5 Consensus size: 39
22441083 CGGATGATAA
* *
22441093 CCGGG-TAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATA-T
*
22441132 CCGGGCTAAGCCCCGAAGGCATTTGTGCGA-TTACTATCCTAGT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTA---TA-T
22441175 -CGAGGCTAAGTAATCCGCGAAGGCATTTGTGCGAGTTACTATAT
1 CCG-GGCTAAG---T-C-CGAAGGCATTTGTGCGAGTTACTATAT
22441219 CCGGGCTAAGTCC-AAGGCATTTGTGCGAG-TACTA-AT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAT
22441255 CCGGGCTAAG-CCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAT
* *
22441293 CC-GGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGTATAT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
*
22441331 CC-GGCTAAATCCGAAGG
1 CCGGGCTAAGTCCGAAGG
22441348 TACTTGGTTT
Statistics
Matches: 189, Mismatches: 9, Indels: 38
0.80 0.04 0.16
Matches are distributed among these distances:
35 2 0.01
36 28 0.15
37 24 0.13
38 36 0.19
39 29 0.15
40 22 0.12
41 1 0.01
42 2 0.01
43 9 0.05
44 8 0.04
45 4 0.02
46 1 0.01
47 17 0.09
48 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:22443781 original size:19 final size:21
Alignment explanation
Indices: 22443757--22443805 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
22443747 GAATCAATTT
22443757 ATGTTTC-TACATATC-TCGC
1 ATGTTTCATACATATCGTCGC
22443776 ATGTTTTCATACATATCGTCGC
1 ATG-TTTCATACATATCGTCGC
22443798 ATGTTTCA
1 ATGTTTCA
22443806 AATTGTTCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 3 0.11
20 4 0.15
21 13 0.48
22 7 0.26
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.43
Consensus pattern (21 bp):
ATGTTTCATACATATCGTCGC
Found at i:22443790 original size:21 final size:21
Alignment explanation
Indices: 22443760--22443803 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
22443750 TCAATTTATG
22443760 TTTCTACATATC-TCGCATGT
1 TTTCTACATATCGTCGCATGT
22443780 TTTCATACATATCGTCGCATGT
1 TTTC-TACATATCGTCGCATGT
22443802 TT
1 TT
22443804 CAAATTGTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 4 0.18
21 8 0.36
22 10 0.45
ACGTcount: A:0.20, C:0.23, G:0.11, T:0.45
Consensus pattern (21 bp):
TTTCTACATATCGTCGCATGT
Found at i:22457433 original size:79 final size:80
Alignment explanation
Indices: 22457260--22457455 Score: 259
Period size: 79 Copynumber: 2.5 Consensus size: 80
22457250 CGAATACACG
* * * * * *
22457260 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGA
* *
22457325 TTTAGCACGGATATA
66 CTTAGCACGGATACA
* * * * *
22457340 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTC-TCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGA
*
22457404 CTTAGCCCGGATACA
66 CTTAGCACGGATACA
22457419 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
22457456 TTAGTAACTC
Statistics
Matches: 100, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
79 52 0.52
80 48 0.48
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (80 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGA
CTTAGCACGGATACA
Found at i:22457480 original size:40 final size:40
Alignment explanation
Indices: 22457273--22457533 Score: 280
Period size: 40 Copynumber: 6.6 Consensus size: 40
22457263 CCAGCATGAT
* * * *
22457273 TGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
22457313 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
22457353 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
22457393 TGCTC-TCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
22457432 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* * *
22457473 TGC-CTTC-GGTCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGACTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
22457512 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
22457534 CATCATTCAA
Statistics
Matches: 187, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
39 63 0.34
40 112 0.60
41 12 0.06
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:22457487 original size:79 final size:78
Alignment explanation
Indices: 22457260--22457533 Score: 245
Period size: 79 Copynumber: 3.5 Consensus size: 78
22457250 CGAATACACG
* * * *
22457260 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGA-CATAACACCAGCACGAATGCTCTTCGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATCATAAC-TC-GCACGAATGC-CTTC-GG
* *
22457324 GT-TTAGCACGGATATA
62 GTCTTAGCCCGGATACA
* * * * * *
22457340 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG-CTCTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CATAACTCGCACGAATGCCT-TCGGGT
22457404 CTTAGCCCGGATACA
64 CTTAGCCCGGATACA
* *
22457419 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTC-GGT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA-TCA-TAACTCGCACGAATGCCTTCGGGT
* **
22457483 CTTAGTCCGGATATGG
64 CTTAGCCCGGATA-CA
* *
22457499 TCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCGGA
22457534 CATCATTCAA
Statistics
Matches: 160, Mismatches: 25, Indels: 19
0.78 0.12 0.09
Matches are distributed among these distances:
78 5 0.03
79 82 0.51
80 61 0.38
81 7 0.04
82 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (78 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATCATAACTCGCACGAATGCCTTCGGGTCT
TAGCCCGGATACA
Found at i:22457503 original size:119 final size:120
Alignment explanation
Indices: 22457257--22457535 Score: 307
Period size: 119 Copynumber: 2.3 Consensus size: 120
22457247 GCCCGAATAC
* * * *
22457257 ACGTCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAATGCTCTTCG
1 ACGTCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGACACAACACCAGCACGAATGCTCTTCG
** * *
22457322 GGGTTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
66 GGACTTAGCACGGATATATAACTAGCACCAATGCTCTTCGGAACTTAGCCCGGAT
* * * * *
22457377 ACATCACTAGCATGAATGCTC-TCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCG
1 ACGTCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGACACAACACCAGCACGAATGCTCTTCG
* * * * *
22457441 GGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGG-TCTTAGTCCGGAT
66 GGACTTAGCACGGATATA-TAACTAGCACCAATGCTCTTCGGAACTTAGCCCGGAT
* * *
22457495 ATGGTCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGACA
1 A-CGTCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCGGACA
22457536 TCATTCAAAT
Statistics
Matches: 132, Mismatches: 23, Indels: 9
0.80 0.14 0.05
Matches are distributed among these distances:
118 13 0.10
119 83 0.63
120 36 0.27
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (120 bp):
ACGTCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGACACAACACCAGCACGAATGCTCTTCG
GGACTTAGCACGGATATATAACTAGCACCAATGCTCTTCGGAACTTAGCCCGGAT
Found at i:22457876 original size:29 final size:29
Alignment explanation
Indices: 22457837--22457915 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
22457827 CTTAATAATC
*
22457837 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
22457867 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
22457896 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
22457916 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:22457958 original size:43 final size:43
Alignment explanation
Indices: 22457897--22457999 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
22457887 TGCATTTCAA
22457897 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
22457940 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
22457983 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
22458000 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:22459905 original size:37 final size:37
Alignment explanation
Indices: 22459844--22459922 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
22459834 TTATTACGAA
* * *
22459844 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
22459881 GTCTTACTCC-GACAAAATCCCCACACGTAGTCATCGG
1 GTCTTAC-CCGGACAAAATCCCCACACGAAGTCATCGG
22459918 GTCTT
1 GTCTT
22459923 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:22460147 original size:47 final size:47
Alignment explanation
Indices: 22460040--22460380 Score: 506
Period size: 47 Copynumber: 7.2 Consensus size: 47
22460030 GCCTTCGGGA
* * * * * * * *
22460040 CTTATCACATTTATGCACTTTCACATCCATTACGT-TGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22460086 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22460133 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22460180 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22460227 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22460274 CTTATCACACATATACAGTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22460320 CTTATCACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCCATTAGGC
22460371 CTTATCACAT
1 CTTATCACAT
22460381 CGGCCATTAG
Statistics
Matches: 269, Mismatches: 20, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
46 51 0.19
47 179 0.67
50 21 0.08
51 18 0.07
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22460377 original size:22 final size:22
Alignment explanation
Indices: 22460352--22460402 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
22460342 TTTCACATTC
22460352 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
22460374 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
22460396 ATCACAT
1 ATCACAT
22460403 ATACATACAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.27
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:22460427 original size:71 final size:71
Alignment explanation
Indices: 22460302--22460446 Score: 256
Period size: 71 Copynumber: 2.0 Consensus size: 71
22460292 TTTCACATTC
*
22460302 ATCACATCGGCATTAGGCCTTATCACATATATACATATACTTTCACATTCATCACATCGGCCATT
1 ATCACATCGGCATTAGGCCTTATCACA-ATATACATACACTTTCACATTCATCACATCGGCCATT
22460367 AGGCCTT
65 AGGCCTT
22460374 ATCACATCGGCCATTAGGCCTTATCAC-ATATACATACACTTTCACATTCATCACATCGGCCATT
1 ATCACATCGG-CATTAGGCCTTATCACAATATACATACACTTTCACATTCATCACATCGGCCATT
22460438 AGGCCTT
65 AGGCCTT
22460445 AT
1 AT
22460447 TACACATATA
Statistics
Matches: 71, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
71 45 0.63
72 10 0.14
73 16 0.23
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.31
Consensus pattern (71 bp):
ATCACATCGGCATTAGGCCTTATCACAATATACATACACTTTCACATTCATCACATCGGCCATTA
GGCCTT
Found at i:22467809 original size:13 final size:13
Alignment explanation
Indices: 22467791--22467815 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22467781 AACGAAGTAG
22467791 AACACGGCCATGA
1 AACACGGCCATGA
22467804 AACACGGCCATG
1 AACACGGCCATG
22467816 TACATCGACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.32, G:0.24, T:0.08
Consensus pattern (13 bp):
AACACGGCCATGA
Found at i:22468275 original size:29 final size:30
Alignment explanation
Indices: 22468242--22468305 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
22468232 TTTTACACAA
*
22468242 TTATTACATT-ATTATTAATATTA-TTATTC
1 TTATTACATTCATTA-TAATACTATTTATTC
*
22468271 TTATT-CATTCATTATATTACTATTTATTC
1 TTATTACATTCATTATAATACTATTTATTC
22468300 TTATTA
1 TTATTA
22468306 TTTTTCTATC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 10 0.33
29 20 0.67
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (30 bp):
TTATTACATTCATTATAATACTATTTATTC
Found at i:22468307 original size:19 final size:20
Alignment explanation
Indices: 22468261--22468307 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
22468251 TATTATTAAT
22468261 ATTATTATTCTTATTCATTC
1 ATTATTATTCTTATTCATTC
*
22468281 ATTA-TATTAC-TATTTATTC
1 ATTATTATT-CTTATTCATTC
22468300 -TTATTATT
1 ATTATTATT
22468308 TTTCTATCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 3 0.12
19 16 0.67
20 5 0.21
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTATTATTCTTATTCATTC
Found at i:22469896 original size:25 final size:25
Alignment explanation
Indices: 22469823--22469906 Score: 70
Period size: 26 Copynumber: 3.4 Consensus size: 25
22469813 GAGTTTTTAT
22469823 TTTTTATTTGTATTTTCACTTT--TA-
1 TTTTTATTT-TATTTTCA-TTTAATAC
* *
22469847 TCTTTA-TTTATCTTC-TTTAAGTAC
1 TTTTTATTTTATTTTCATTTAA-TAC
22469871 TTTTTATTTTATTTTCATTTAATAC
1 TTTTTATTTTATTTTCATTTAATAC
*
22469896 TATTTCATTTT
1 T-TTTTATTTT
22469907 TAGGTTTTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
20 3 0.06
22 6 0.12
23 4 0.08
24 10 0.21
25 12 0.25
26 13 0.27
ACGTcount: A:0.20, C:0.11, G:0.02, T:0.67
Consensus pattern (25 bp):
TTTTTATTTTATTTTCATTTAATAC
Found at i:22471404 original size:15 final size:17
Alignment explanation
Indices: 22471374--22471406 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
22471364 GAAAACATCT
22471374 CAAAAGCATAAAGAAAA
1 CAAAAGCATAAAGAAAA
22471391 CAAAA-CAT-AAGAAAA
1 CAAAAGCATAAAGAAAA
22471406 C
1 C
22471407 TCAAAACTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 3 0.19
17 5 0.31
ACGTcount: A:0.70, C:0.15, G:0.09, T:0.06
Consensus pattern (17 bp):
CAAAAGCATAAAGAAAA
Found at i:22471411 original size:17 final size:18
Alignment explanation
Indices: 22471372--22471413 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
22471362 AAGAAAACAT
22471372 CTCAAAAGCATAAAGAAAA
1 CTCAAAA-CATAAAGAAAA
22471391 --CAAAACAT-AAGAAAA
1 CTCAAAACATAAAGAAAA
22471406 CTCAAAAC
1 CTCAAAAC
22471414 TCCTGAAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
15 7 0.33
16 3 0.14
17 11 0.52
ACGTcount: A:0.64, C:0.19, G:0.07, T:0.10
Consensus pattern (18 bp):
CTCAAAACATAAAGAAAA
Found at i:22480515 original size:34 final size:34
Alignment explanation
Indices: 22480472--22480540 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
22480462 ATTGCTTAGC
22480472 TATGTTTTATTTTTAATAGATAGCCTATGTTATT
1 TATGTTTTATTTTTAATAGATAGCCTATGTTATT
22480506 TATGTTTTATTTTTAATAGATAGCCTATGTTATT
1 TATGTTTTATTTTTAATAGATAGCCTATGTTATT
22480540 T
1 T
22480541 GACTTGTTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.26, C:0.06, G:0.12, T:0.57
Consensus pattern (34 bp):
TATGTTTTATTTTTAATAGATAGCCTATGTTATT
Found at i:22491072 original size:6 final size:6
Alignment explanation
Indices: 22491061--22491111 Score: 54
Period size: 6 Copynumber: 9.0 Consensus size: 6
22491051 TTATTTACTC
* *
22491061 TTATTT TTA-TT TTA-TT TTA-TT TTCTTT TGATTT TTATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
*
22491106 TCATTT
1 TTATTT
22491112 CAATTTTATT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
5 14 0.36
6 25 0.64
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (6 bp):
TTATTT
Found at i:22491075 original size:5 final size:5
Alignment explanation
Indices: 22491065--22491131 Score: 57
Period size: 5 Copynumber: 12.8 Consensus size: 5
22491055 TTACTCTTAT
* *
22491065 TTTTA TTTTA TTTTA TTTTC TTTTGA TTTTTA TTTTTA TTTTCA TTTCAA
1 TTTTA TTTTA TTTTA TTTTA TTTT-A -TTTTA -TTTTA TTTT-A TTT-TA
22491115 TTTTA --TTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTT
22491132 GAAAGACATA
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
3 3 0.06
5 30 0.58
6 15 0.29
7 4 0.08
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:22491106 original size:23 final size:23
Alignment explanation
Indices: 22491069--22491131 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
22491059 TCTTATTTTT
* *
22491069 ATTTTA-TTTTATTTTCTTTTGA
1 ATTTTATTTTTATTTTCATTTCA
*
22491091 TTTTTATTTTTATTTTCATTTCA
1 ATTTTATTTTTATTTTCATTTCA
22491114 ATTTTATTATTTTATTTT
1 ATTTTA-T-TTTTATTTT
22491132 GAAAGACATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
22 5 0.15
23 19 0.56
24 1 0.03
25 9 0.26
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.75
Consensus pattern (23 bp):
ATTTTATTTTTATTTTCATTTCA
Found at i:22495214 original size:40 final size:40
Alignment explanation
Indices: 22495159--22495358 Score: 364
Period size: 40 Copynumber: 5.0 Consensus size: 40
22495149 GTATGGGAAA
*
22495159 TGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
22495199 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
22495239 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
*
22495279 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTTGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
* *
22495319 TGGTGTTACATCCGGGCTAAGTCCTGAAGGGCATTCGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
22495359 CGATGATGTG
Statistics
Matches: 155, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 155 1.00
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (40 bp):
TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
Found at i:22495573 original size:28 final size:28
Alignment explanation
Indices: 22495540--22495638 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
22495530 ATGAATATAG
22495540 GCACTATGTGTGCGAATTCTTTAACCGA
1 GCACTATGTGTGCGAATTCTTTAACCGA
* ** * **
22495568 GCACTATGTGAGCGAGA-TCGGTCAGTG-
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
*
22495595 GACACTGTGTGTGCGAATTCTTTAACCGA
1 G-CACTATGTGTGCGAATTCTTTAACCGA
22495624 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
22495639 GATCGGTCAG
Statistics
Matches: 53, Mismatches: 14, Indels: 8
0.71 0.19 0.11
Matches are distributed among these distances:
27 2 0.04
28 49 0.92
29 2 0.04
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:22495607 original size:56 final size:56
Alignment explanation
Indices: 22495537--22495665 Score: 224
Period size: 56 Copynumber: 2.3 Consensus size: 56
22495527 CGAATGAATA
*
22495537 TAGGCACTATGTGTGCGAATTCTTTAACCGAGCACTATGTGAGCGAGATCGGTCAG
1 TAGGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGAGCGAGATCGGTCAG
*
22495593 T-GGACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAG
1 TAGG-CACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGAGCGAGATCGGTCAG
22495649 TAGGCACTGTGTGTGCG
1 TAGGCACTGTGTGTGCG
22495666 GATTTCATTT
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
55 2 0.03
56 65 0.94
57 2 0.03
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (56 bp):
TAGGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGAGCGAGATCGGTCAG
Found at i:22495655 original size:28 final size:28
Alignment explanation
Indices: 22495568--22495665 Score: 78
Period size: 28 Copynumber: 3.5 Consensus size: 28
22495558 CTTTAACCGA
*
22495568 GCACTATGTGAGCGAGATCGGTCAGT-G
1 GCACTATGTGTGCGAGATCGGTCAGTAG
* ** *
22495595 GACACTGTGTGTGCGA-ATTCTTTAACCG-A-
1 G-CACTATGTGTGCGAGA-TCGGT--CAGTAG
22495624 GCACTATGTGTGCGAGATCGGTCAGTAG
1 GCACTATGTGTGCGAGATCGGTCAGTAG
*
22495652 GCACTGTGTGTGCG
1 GCACTATGTGTGCG
22495666 GATTTCATTT
Statistics
Matches: 53, Mismatches: 10, Indels: 15
0.68 0.13 0.19
Matches are distributed among these distances:
26 2 0.04
27 3 0.06
28 44 0.83
29 2 0.04
30 2 0.04
ACGTcount: A:0.20, C:0.19, G:0.34, T:0.27
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCAGTAG
Found at i:22499921 original size:40 final size:40
Alignment explanation
Indices: 22499866--22500025 Score: 284
Period size: 40 Copynumber: 4.0 Consensus size: 40
22499856 GTATGGGAAA
*
22499866 TGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
22499906 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
*
22499946 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTTGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
* *
22499986 TGGTGTTACATCCGGGCTAAGTCCTGAAGGGCATTCGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
22500026 CGATGATGTG
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 115 1.00
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.27
Consensus pattern (40 bp):
TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
Found at i:22500241 original size:28 final size:28
Alignment explanation
Indices: 22500208--22500306 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
22500198 ATGAATATAG
22500208 GCACTATGTGTGCGAATTCTTTAACCGA
1 GCACTATGTGTGCGAATTCTTTAACCGA
** * **
22500236 GCACTATGTGTGCGAGA-TCGGTCAGTG-
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
* *
22500263 GACACTGTGTGTGTGAATTCTTTAACCGA
1 G-CACTATGTGTGCGAATTCTTTAACCGA
22500292 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
22500307 GATCGGTCGG
Statistics
Matches: 53, Mismatches: 14, Indels: 8
0.71 0.19 0.11
Matches are distributed among these distances:
27 2 0.04
28 49 0.92
29 2 0.04
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:22500275 original size:56 final size:56
Alignment explanation
Indices: 22500209--22500333 Score: 214
Period size: 56 Copynumber: 2.2 Consensus size: 56
22500199 TGAATATAGG
*
22500209 CACTATGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGA
1 CACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGA
* * *
22500265 CACTGTGTGTGTGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCGGTGGG
1 CACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGA
22500321 CACTGTGTGTGCG
1 CACTGTGTGTGCG
22500334 GATTTCGTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.19, C:0.19, G:0.32, T:0.30
Consensus pattern (56 bp):
CACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGA
Found at i:22504636 original size:40 final size:40
Alignment explanation
Indices: 22504581--22504740 Score: 284
Period size: 40 Copynumber: 4.0 Consensus size: 40
22504571 GTATGGGAAA
*
22504581 TGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
22504621 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
*
22504661 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTTGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
* *
22504701 TGGTGTTACATCCGGGCTAAGTCCTGAAGGGCATTCGTGC
1 TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
22504741 CGATGATGTG
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 115 1.00
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.27
Consensus pattern (40 bp):
TGGTGTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
Found at i:22504955 original size:28 final size:28
Alignment explanation
Indices: 22504922--22505020 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
22504912 ATGAATATAG
22504922 GCACTATGTGTGCGAATTCTTTAACCGA
1 GCACTATGTGTGCGAATTCTTTAACCGA
** * **
22504950 GCACTATGTGTGCGAGA-TCGGTCAGTG-
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
*
22504977 GACACTGTGTGTGCGAATTCTTTAACCGA
1 G-CACTATGTGTGCGAATTCTTTAACCGA
22505006 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
22505021 GATCGGTCAG
Statistics
Matches: 55, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
27 2 0.04
28 51 0.93
29 2 0.04
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:22504989 original size:56 final size:56
Alignment explanation
Indices: 22504923--22505047 Score: 232
Period size: 56 Copynumber: 2.2 Consensus size: 56
22504913 TGAATATAGG
*
22504923 CACTATGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGA
1 CACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGA
*
22504979 CACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGG
1 CACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGA
22505035 CACTGTGTGTGCG
1 CACTGTGTGTGCG
22505048 GATTTCGTTT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 67 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (56 bp):
CACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGA
Found at i:22505037 original size:28 final size:28
Alignment explanation
Indices: 22504950--22505047 Score: 99
Period size: 28 Copynumber: 3.5 Consensus size: 28
22504940 CTTTAACCGA
22504950 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTGG
* * ** * ** *
22504978 ACACTGTGTGTGCGA-ATTCTTTAACCGA
1 GCACTATGTGTGCGAGA-TCGGTCAGTGG
22505006 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTGG
*
22505034 GCACTGTGTGTGCG
1 GCACTATGTGTGCG
22505048 GATTTCGTTT
Statistics
Matches: 51, Mismatches: 17, Indels: 4
0.71 0.24 0.06
Matches are distributed among these distances:
27 1 0.02
28 49 0.96
29 1 0.02
ACGTcount: A:0.18, C:0.19, G:0.35, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCAGTGG
Found at i:22515420 original size:4 final size:4
Alignment explanation
Indices: 22515411--22515441 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
22515401 TGTTCTTAAT
22515411 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
22515442 TTAGTAGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:22519954 original size:49 final size:48
Alignment explanation
Indices: 22519854--22519955 Score: 125
Period size: 49 Copynumber: 2.1 Consensus size: 48
22519844 TCACACGTCT
* * *
22519854 GTGTCTATTTAATAGATTGTAACACGACCTAAGCCACACCACAGGGCC
1 GTGTCTATTTAATAGACTCTAACACGACCTAAGCCACACCACAGAGCC
* * *
22519902 GTGTCTATTTAGTAGACTCTAAACACGGCCTAAGCCACCCCACACGAG-C
1 GTGTCTATTTAATAGACTCT-AACACGACCTAAGCCACACCACA-GAGCC
22519951 GTGTC
1 GTGTC
22519956 ACACGGGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
48 17 0.37
49 27 0.59
50 2 0.04
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (48 bp):
GTGTCTATTTAATAGACTCTAACACGACCTAAGCCACACCACAGAGCC
Found at i:22524110 original size:40 final size:40
Alignment explanation
Indices: 22524026--22524210 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
22524016 TCGAATGATG
* *
22524026 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
22524065 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
22524106 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
22524145 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
22524184 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
22524211 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:22524162 original size:79 final size:81
Alignment explanation
Indices: 22524026--22524208 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
22524016 TCGAATGATG
* *
22524026 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
22524090 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
22524105 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
22524167 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
22524185 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
22524209 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:22524232 original size:79 final size:78
Alignment explanation
Indices: 22524027--22524243 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
22524017 CGAATGATGT
* *
22524027 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
22524090 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *
22524107 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
22524170 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
22524186 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
22524244 TACGTGATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 46 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:22532175 original size:40 final size:40
Alignment explanation
Indices: 22532091--22532275 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
22532081 TCGAATGATG
* *
22532091 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
22532130 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
22532171 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
22532210 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
22532249 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
22532276 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Done.