Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 72 of 325
Found at i:22532227 original size:79 final size:81
Alignment explanation
Indices: 22532091--22532273 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
22532081 TCGAATGATG
* *
22532091 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
22532155 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
22532170 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
22532232 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
22532250 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
22532274 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:22532297 original size:79 final size:78
Alignment explanation
Indices: 22532092--22532308 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
22532082 CGAATGATGT
* *
22532092 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
22532155 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *
22532172 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
22532235 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
22532251 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
22532309 TACGTGATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 46 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:22537284 original size:52 final size:52
Alignment explanation
Indices: 22537209--22537362 Score: 154
Period size: 52 Copynumber: 3.0 Consensus size: 52
22537199 CACATAACAT
* * *
22537209 ACCGATGCCATATG-CCAGATATGGTCTTATACGGAATCACATTTCACATCAC
1 ACCGATGCCA-AAGCCCAGCTATGGTCTTATACGGAATCACATATCACATCAC
* * ***
22537261 ACTGATGCCAAAGCCCAGCTATGGTCTTATACAGG-ATCTCGA-ATCACATTGT
1 ACCGATGCCAAAGCCCAGCTATGGTCTTATAC-GGAATCAC-ATATCACATCAC
* *
22537313 ACCGATGCCATAGCCCAGCTATGGTCTTATACAGAAGT-ACATATCACATC
1 ACCGATGCCAAAGCCCAGCTATGGTCTTATACGGAA-TCACATATCACATC
22537363 TTTTCCGTCA
Statistics
Matches: 83, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
51 4 0.05
52 75 0.90
53 4 0.05
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (52 bp):
ACCGATGCCAAAGCCCAGCTATGGTCTTATACGGAATCACATATCACATCAC
Found at i:22542302 original size:34 final size:34
Alignment explanation
Indices: 22542259--22542324 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
22542249 CAATCATGAA
22542259 TAAAGTGATCCGTGGCCCCACATTTATAACAAGC
1 TAAAGTGATCCGTGGCCCCACATTTATAACAAGC
22542293 TAAAGTGATCCGTGGCCCCACATTTATAACAA
1 TAAAGTGATCCGTGGCCCCACATTTATAACAA
22542325 TCTCCTAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (34 bp):
TAAAGTGATCCGTGGCCCCACATTTATAACAAGC
Found at i:22543789 original size:20 final size:21
Alignment explanation
Indices: 22543756--22543798 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
22543746 CTTGAAAATA
22543756 TGGGCACATGCCCGTGTGGCC
1 TGGGCACATGCCCGTGTGGCC
*
22543777 TGGG-ACATTCCCGTGTGGCC
1 TGGGCACATGCCCGTGTGGCC
22543797 TG
1 TG
22543799 CCTATGGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.09, C:0.30, G:0.37, T:0.23
Consensus pattern (21 bp):
TGGGCACATGCCCGTGTGGCC
Found at i:22544670 original size:99 final size:102
Alignment explanation
Indices: 22544544--22544746 Score: 227
Period size: 105 Copynumber: 2.0 Consensus size: 102
22544534 TCACACATTA
** *
22544544 CACACCGAAGCCATAGCCCTGCCATGGTCTTACA-CGGATCAC-ATGACA-T-ACCGATGCCATA
1 CACACCGAAGCCATAGCCCAACCATGGTCTTACATCGGATCACAATCACATTCACCGATGCCATA
*
22544605 TCCCAGATATGGTCTTATACAGAA-TCACATTATCACAT
66 GCCCAGATATGGTCTTATACAGAAGT-ACA-TATCACAT
* * * * * *
22544643 CACACGGATGCCATAGCCCAACTATGGTCTTATATGGGATCTCGAATCACATTGCACCGATGCCA
1 CACACCGAAGCCATAGCCCAACCATGGTCTTACATCGGATCAC-AATCACATT-CACCGATGCCA
* *
22544708 TAGCCCAGCTATGGTCTTATACGGAAGTACATATCACAT
64 TAGCCCAGATATGGTCTTATACAGAAGTACATATCACAT
22544747 ATTTTCCGTC
Statistics
Matches: 85, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
99 28 0.33
100 6 0.07
102 5 0.06
103 1 0.01
104 8 0.09
105 36 0.42
106 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (102 bp):
CACACCGAAGCCATAGCCCAACCATGGTCTTACATCGGATCACAATCACATTCACCGATGCCATA
GCCCAGATATGGTCTTATACAGAAGTACATATCACAT
Found at i:22544744 original size:52 final size:52
Alignment explanation
Indices: 22544593--22544746 Score: 177
Period size: 52 Copynumber: 2.9 Consensus size: 52
22544583 CACATGACAT
* * *
22544593 ACCGATGCCATATCCCAGATATGGTCTTATACAGAATCACATTATCACATCAC
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACA-TATCACATCAC
* * * * * **
22544646 ACGGATGCCATAGCCCAACTATGGTCTTATATGGGATCTCGA-ATCACATTGC
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCAC-ATATCACATCAC
22544698 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGT-ACATATCACAT
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAA-TCACATATCACAT
22544747 ATTTTCCGTC
Statistics
Matches: 83, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
51 1 0.01
52 48 0.58
53 33 0.40
54 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (52 bp):
ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCACATCAC
Found at i:22550883 original size:25 final size:26
Alignment explanation
Indices: 22550833--22550888 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
22550823 ACACACAAAT
22550833 TTTG-AGTCAAAAGTTGACTTGAAAA
1 TTTGAAGTCAAAAGTTGACTTGAAAA
*
22550858 TTTGAAGTCAAAA-TTTA-TTGATAAA
1 TTTGAAGTCAAAAGTTGACTTGA-AAA
22550883 TTTGAA
1 TTTGAA
22550889 AGAAAGCTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 4 0.14
25 16 0.57
26 8 0.29
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.38
Consensus pattern (26 bp):
TTTGAAGTCAAAAGTTGACTTGAAAA
Found at i:22551307 original size:53 final size:53
Alignment explanation
Indices: 22551226--22551333 Score: 153
Period size: 53 Copynumber: 2.0 Consensus size: 53
22551216 TTTTTATAGT
* * * * * *
22551226 TTCAATTACATGAATAAAATAGAGTTCTTGTAAAATTTAGCTCCTCTATTTGA
1 TTCAATCACATGAATAAAAGAGAATTCTTGTAAAATTTAACTACTCCATTTGA
*
22551279 TTCAATCACATGAATAAAAGAGAATTCTTGTAGAATTTAACTACTCCATTTGA
1 TTCAATCACATGAATAAAAGAGAATTCTTGTAAAATTTAACTACTCCATTTGA
22551332 TT
1 TT
22551334 GTTCTATAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (53 bp):
TTCAATCACATGAATAAAAGAGAATTCTTGTAAAATTTAACTACTCCATTTGA
Found at i:22552460 original size:21 final size:20
Alignment explanation
Indices: 22552436--22552483 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
22552426 AAAGAAAAAA
*
22552436 TTTAAAGGTGATTATTTTATT
1 TTTAAAGCT-ATTATTTTATT
*
22552457 TTTAAATCTATTATTTTATT
1 TTTAAAGCTATTATTTTATT
22552477 TTATAAA
1 TT-TAAA
22552484 AACATAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.58
Consensus pattern (20 bp):
TTTAAAGCTATTATTTTATT
Found at i:22553455 original size:6 final size:6
Alignment explanation
Indices: 22553444--22553490 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
22553434 AATTTATACA
* *
22553444 TTTTAT TTTTAT TTATAT ATTTTAT TTTTAT TTATAT ATTTTAT TTT
1 TTTTAT TTTTAT TTTTAT -TTTTAT TTTTAT TTTTAT -TTTTAT TTT
22553491 ATCAATCTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
6 25 0.71
7 10 0.29
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:22553459 original size:19 final size:19
Alignment explanation
Indices: 22553435--22553490 Score: 103
Period size: 19 Copynumber: 2.9 Consensus size: 19
22553425 AGCACTTAAA
*
22553435 ATTTATACATTTTATTTTT
1 ATTTATATATTTTATTTTT
22553454 ATTTATATATTTTATTTTT
1 ATTTATATATTTTATTTTT
22553473 ATTTATATATTTTATTTT
1 ATTTATATATTTTATTTT
22553491 ATCAATCTAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 36 1.00
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
ATTTATATATTTTATTTTT
Found at i:22553466 original size:13 final size:13
Alignment explanation
Indices: 22553435--22553527 Score: 54
Period size: 13 Copynumber: 7.3 Consensus size: 13
22553425 AGCACTTAAA
*
22553435 ATTTATACATTTT
1 ATTTATATATTTT
22553448 ATTT-T-TATTTAT
1 ATTTATATATTT-T
*
22553460 ATATTTTAT-TTTT
1 AT-TTATATATTTT
22553473 ATTTATATATTTT
1 ATTTATATATTTT
* *
22553486 ATTT-TATCAATCT
1 ATTTATAT-ATTTT
*
22553499 A-CTATATCA-TTT
1 ATTTATAT-ATTTT
*
22553511 ATTTATACATTTT
1 ATTTATATATTTT
22553524 ATTT
1 ATTT
22553528 TATTTTATCC
Statistics
Matches: 63, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
11 4 0.06
12 17 0.27
13 37 0.59
14 4 0.06
15 1 0.02
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (13 bp):
ATTTATATATTTT
Found at i:22553477 original size:38 final size:38
Alignment explanation
Indices: 22553435--22553532 Score: 117
Period size: 38 Copynumber: 2.6 Consensus size: 38
22553425 AGCACTTAAA
* * *
22553435 ATTTATACATTTTATTTTTATTTATATATTTTAT-TTTT
1 ATTTATACATTTTA-TTTTATTTATATACTATATCATTT
* ** *
22553473 ATTTATATATTTTATTTTATCAATCTACTATATCATTT
1 ATTTATACATTTTATTTTATTTATATACTATATCATTT
22553511 ATTTATACATTTTATTTTATTT
1 ATTTATACATTTTATTTTATTT
22553533 TATCCTTGTT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
37 14 0.29
38 35 0.71
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (38 bp):
ATTTATACATTTTATTTTATTTATATACTATATCATTT
Found at i:22555225 original size:23 final size:22
Alignment explanation
Indices: 22555199--22555267 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 22
22555189 AAATATTTTT
22555199 TTTTAATTTTATATTTTTAAATA
1 TTTT-ATTTTATATTTTTAAATA
22555222 --TT-TTTTAT-TTTTTAAATA
1 TTTTATTTTATATTTTTAAATA
* *
22555240 TTTTTTTTTGTAATTTTTAAATA
1 TTTTATTTTAT-ATTTTTAAATA
22555263 TTTTA
1 TTTTA
22555268 AGATTTTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
18 10 0.26
19 6 0.15
20 2 0.05
21 7 0.18
23 14 0.36
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.70
Consensus pattern (22 bp):
TTTTATTTTATATTTTTAAATA
Found at i:22555240 original size:28 final size:27
Alignment explanation
Indices: 22555188--22555244 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 27
22555178 TCGTATGCTA
*
22555188 TAAATATTTTTTTTTAATTTTATATTTT
1 TAAATATTTTTTTTT-ATTTAATATTTT
22555216 TAAATATTTTTTATTT-TTTAAATATTTT
1 TAAATATTTTTT-TTTATTT-AATATTTT
22555244 T
1 T
22555245 TTTTGTAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 3 0.12
28 20 0.77
29 3 0.12
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (27 bp):
TAAATATTTTTTTTTATTTAATATTTT
Found at i:22555246 original size:19 final size:19
Alignment explanation
Indices: 22555205--22555245 Score: 75
Period size: 18 Copynumber: 2.2 Consensus size: 19
22555195 TTTTTTTTAA
22555205 TTTTATATTTTTAAATATT
1 TTTTATATTTTTAAATATT
22555224 TTTTAT-TTTTTAAATATT
1 TTTTATATTTTTAAATATT
22555242 TTTT
1 TTTT
22555246 TTTGTAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTATATTTTTAAATATT
Found at i:22560194 original size:25 final size:25
Alignment explanation
Indices: 22560166--22560215 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
22560156 ATACAATTGA
22560166 ATGGTTTGGATTTGAAATATTTGGT
1 ATGGTTTGGATTTGAAATATTTGGT
22560191 ATGGTTTGGATTTGAAATATTTGGT
1 ATGGTTTGGATTTGAAATATTTGGT
22560216 CTTTAGGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (25 bp):
ATGGTTTGGATTTGAAATATTTGGT
Found at i:22579792 original size:16 final size:16
Alignment explanation
Indices: 22579748--22579797 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
22579738 CATGTTTCCC
22579748 TAAAATTTT-AATTTA
1 TAAAATTTTAAATTTA
**
22579763 -GGAATTTTATAATTTA
1 TAAAATTTTA-AATTTA
*
22579779 TAAAATTTTAAATTAA
1 TAAAATTTTAAATTTA
22579795 TAA
1 TAA
22579798 TAAGAATATT
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
14 6 0.22
16 14 0.52
17 7 0.26
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (16 bp):
TAAAATTTTAAATTTA
Found at i:22586411 original size:262 final size:261
Alignment explanation
Indices: 22585837--22586779 Score: 878
Period size: 263 Copynumber: 3.6 Consensus size: 261
22585827 CGAGTTGCCC
* * * * * * ** * * ***
22585837 TAGAGAATATATATTATGTAACGGCAATGTGAAGTGGCCCCACATTGTGGAAGTTGCTTTTGTTG
1 TAGAGAATATATATAAGGTAACGACAAGGTGAGGTGGCACCATGTTGTGGAAGCTACTTTCAATG
** * * * * * * *
22585902 TGCGGGAAAAGTACGCAGTGTATAATAATTGGTTGAACTAACTTATGTTAATTTATCGTCGGCCA
66 TGTAGGAAAAATACACAGTGTATAATAATTGGTTGAACTATCTTATGTT-ATTTATAGCCTGTCA
* * * * * *
22585967 GTTTATCAAATCC-CTATGAGGA-TACTGAGACTTGAGGAGTTCTGTTTCACTACTTCGCAATTA
130 GTTTATCAAA-CCTCTAT-AAGATTAATGAGATTTAAGGAGTTCTGTTTCACTACTTCACAGTTA
* * *
22586030 TA-TACCTGATATATAATGTTGCATC-ATGCAAAATTG-AAAAA-CTCAATTTTTTATTAATATG
193 TACT-CTTGATAAATAATGTTGCATCTA-GTAAAATTGAAAAAATCTCAA--TTTT-TTAATATG
22586091 ATACACTCT
253 ATACACTCT
*** * * * * * *
22586100 TAGAGAATATATAT-AGTGTAACGGTGAGGTGAGGTGACATCACGTTGTGGCAGCTGCTTAT-GA
1 TAGAGAATATATATAAG-GTAACGACAAGGTGAGGTGGCACCATGTTGTGGAAGCTACTT-TCAA
* * * * *
22586163 TGTGTTGG-AAGATACACAGTGTATAACAATTGGTTGAACTATCTTATGTTATTTATTGCCTGTT
64 TGTGTAGGAAAAATACACAGTGTATAATAATTGGTTGAACTATCTTATGTTATTTATAGCCTGTC
**
22586227 AGTTTATCAAACCTCTATAAGATTAATGAGATTTTTAAGGAGTTCCATTTCACTACTTCACAGTT
129 AGTTTATCAAACCTCTATAAGATTAATGAGA--TTTAAGGAGTTCTGTTTCACTACTTCACAGTT
* * *
22586292 ATACTCTTGATAAATAATGTTGTATCTAGTAAAATTGAAAAAATCTCAATTTTTTAATATAATAT
192 ATACTCTTGATAAATAATGTTGCATCTAGTAAAATTGAAAAAATCTCAATTTTTTAATATGATAC
22586357 ACTCT
257 ACTCT
* * *
22586362 TAGAGAATATATTTAAGGTAACGACAAGGTTAGGTGGCACCATGTTGTGGAAGTTACTTTCAATG
1 TAGAGAATATATATAAGGTAACGACAAGGTGAGGTGGCACCATGTTGTGGAAGCTACTTTCAATG
* * *
22586427 TGTAGGAAAAATACGCCGTGTATAATAATTGGTTGAATTATCTTATGTTATTTATAGCCTGTCAG
66 TGTAGGAAAAATACACAGTGTATAATAATTGGTTGAACTATCTTATGTTATTTATAGCCTGTCAG
** * * * * * *
22586492 TTTATCAAATTTCTATAAGGTTAATGAGATTTAAGAAGTTTTGCTTCACTACGTCAGAGTTATAC
131 TTTATCAAACCTCTATAAGATTAATGAGATTTAAGGAGTTCTGTTTCACTACTTCACAGTTATAC
* *
22586557 TCTTGATAAATAATGTTGCATATCGTAAAATTGAAAAAAT-T-AATTTTTTAATATGATACACTC
196 TCTTGATAAATAATGTTGCATCTAGTAAAATTGAAAAAATCTCAATTTTTTAATATGATACACTC
22586620 T
261 T
* * * * * * *
22586621 TAGAGTATATATATAAGGTAATGACAAGGTGAGATGGCACTATGTTGTGGAAGTTATTTTTGATA
1 TAGAGAATATATATAAGGTAACGACAAGGTGAGGTGGCACCATGTTGTGGAAGCTA-CTTTCA-A
* * * * *
22586686 TGCG-AGG-AAAATAC-CCGTATATAATAATTGGTTGAACTAAT-TTATGTTATTT-TA--TTCT
64 TGTGTAGGAAAAATACACAGTGTATAATAATTGGTTGAACT-ATCTTATGTTATTTATAGCCTGT
* * * * *
22586744 CAGTTTATCATATCTCTATAAAAATAACGAGATTTA
128 CAGTTTATCAAACCTCTATAAGATTAATGAGATTTA
22586780 GGTGTTTCGT
Statistics
Matches: 572, Mismatches: 92, Indels: 40
0.81 0.13 0.06
Matches are distributed among these distances:
255 32 0.06
257 2 0.00
258 33 0.06
259 80 0.14
260 13 0.02
261 102 0.18
262 106 0.19
263 191 0.33
264 8 0.01
265 5 0.01
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (261 bp):
TAGAGAATATATATAAGGTAACGACAAGGTGAGGTGGCACCATGTTGTGGAAGCTACTTTCAATG
TGTAGGAAAAATACACAGTGTATAATAATTGGTTGAACTATCTTATGTTATTTATAGCCTGTCAG
TTTATCAAACCTCTATAAGATTAATGAGATTTAAGGAGTTCTGTTTCACTACTTCACAGTTATAC
TCTTGATAAATAATGTTGCATCTAGTAAAATTGAAAAAATCTCAATTTTTTAATATGATACACTC
T
Found at i:22587696 original size:64 final size:63
Alignment explanation
Indices: 22587591--22587719 Score: 213
Period size: 64 Copynumber: 2.0 Consensus size: 63
22587581 TTATCAAACT
* *
22587591 CTCAACTTTTGTCAGTTCTAATCCTTACAATAGTACTAATGTTACTACTTTTCTCATTCATTAG
1 CTCAACTTTTGTCACTTCTAATCCTTACAATAGTACCAATGTTACTAC-TTTCTCATTCATTAG
* *
22587655 CTCAACTTTTGTCACTTGTAATCCTTACAATAGTGCCAATGTTACTACTTTCTCATTCATTAG
1 CTCAACTTTTGTCACTTCTAATCCTTACAATAGTACCAATGTTACTACTTTCTCATTCATTAG
22587718 CT
1 CT
22587720 TTCTGCATAG
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
63 17 0.28
64 44 0.72
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.43
Consensus pattern (63 bp):
CTCAACTTTTGTCACTTCTAATCCTTACAATAGTACCAATGTTACTACTTTCTCATTCATTAG
Found at i:22598034 original size:50 final size:51
Alignment explanation
Indices: 22597957--22598081 Score: 198
Period size: 50 Copynumber: 2.5 Consensus size: 51
22597947 GACCATGGCA
*
22597957 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
22598008 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
22598058 ACAAGTGAAAAGTGGTAGTTTCGG
1 ACAAGTGATAAGTGATAGCTTCGG
22598082 TTACTTGATC
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
50 48 0.71
51 20 0.29
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:22598099 original size:31 final size:31
Alignment explanation
Indices: 22598061--22598240 Score: 245
Period size: 31 Copynumber: 5.8 Consensus size: 31
22598051 ACAAATGACA
* *
22598061 AGTGAAAAGTGGTAGTTTCGGTTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACTTGATC
**
22598092 AGTGAAAAGTGGTAGCTTCAACTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACTTGATC
* *
22598123 AGTGAAAAATGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACTTGATC
22598154 AGTGAAAAGTGGTAGCTTCGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACTTGATC
* * * *
22598185 AGTGAAAAATGGTAGCTCCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACTTGATC
*
22598216 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
22598241 AAGTGACAAG
Statistics
Matches: 130, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
30 2 0.02
31 126 0.97
32 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACTTGATC
Found at i:22598235 original size:62 final size:62
Alignment explanation
Indices: 22598061--22598240 Score: 270
Period size: 62 Copynumber: 2.9 Consensus size: 62
22598051 ACAAATGACA
* * * * * **
22598061 AGTGAAAAGTGGTAGTTTCGGTTACTTGATCAGTGAAAAGTGGTAGCTTCAACTACTTGATC
1 AGTGAAAAATGGTAGCTCCGGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACTTGATC
*
22598123 AGTGAAAAATGGTAGCTCTGGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACTTGATC
1 AGTGAAAAATGGTAGCTCCGGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACTTGATC
* *
22598185 AGTGAAAAATGGTAGCTCCGGCTACCTAATCAGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAATGGTAGCTCCGGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTAC
22598241 AAGTGACAAG
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 107 1.00
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (62 bp):
AGTGAAAAATGGTAGCTCCGGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACTTGATC
Found at i:22599766 original size:28 final size:28
Alignment explanation
Indices: 22599723--22599793 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
22599713 TGACCCTGAC
22599723 GACCCATCTCGCGAGGTGGAATACTTGT
1 GACCCATCTCGCGAGGTGGAATACTTGT
* * *
22599751 GACCCATCTTGTGAGGTGGAATGCTTGT
1 GACCCATCTCGCGAGGTGGAATACTTGT
22599779 GACCCA-CTTCGCGAG
1 GACCCATC-TCGCGAG
22599794 CCACACACCA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 1 0.03
28 36 0.97
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (28 bp):
GACCCATCTCGCGAGGTGGAATACTTGT
Found at i:22601641 original size:31 final size:31
Alignment explanation
Indices: 22601606--22601668 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
22601596 AGAACACATC
* **
22601606 ATTAATAAATTAATA-AATAATTTTATATTTT
1 ATTAA-AAATAAATATAATAATTGAATATTTT
*
22601637 ATTAAAAATAAATATAATTATTGAATATTTT
1 ATTAAAAATAAATATAATAATTGAATATTTT
22601668 A
1 A
22601669 ATGATGATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 8 0.30
31 19 0.70
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (31 bp):
ATTAAAAATAAATATAATAATTGAATATTTT
Found at i:22604357 original size:7 final size:7
Alignment explanation
Indices: 22604347--22604390 Score: 54
Period size: 7 Copynumber: 6.1 Consensus size: 7
22604337 TTGAGATTTG
22604347 ATTAAAA
1 ATTAAAA
22604354 ATTAAAAA
1 ATT-AAAA
*
22604362 AATAGAAA
1 ATTA-AAA
22604370 ATTAAAA
1 ATTAAAA
22604377 ATT-AAA
1 ATTAAAA
22604383 ATTAAAA
1 ATTAAAA
22604390 A
1 A
22604391 GAAAAGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
6 6 0.19
7 14 0.44
8 12 0.38
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (7 bp):
ATTAAAA
Found at i:22606817 original size:46 final size:44
Alignment explanation
Indices: 22606756--22606888 Score: 146
Period size: 47 Copynumber: 2.9 Consensus size: 44
22606746 GACGTATGGG
*
22606756 TTATGTGAGCTAGTGTAAGACATGTCTGGGACATGA-ATCGGCCACA
1 TTATGAGAGCTAGTGTAAGACATGTCTGGGACATGACATCGG---CA
* *
22606802 TTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATTGGCA
1 TTATGAGAGCTAGTGTAAGA-CATGTCTGGGACATGACATCGGCA
22606847 TTGA-GACAAGAGCTAGTGTAAGACATGTCTGGGACATG-CATC
1 TT-ATG---AGAGCTAGTGTAAGACATGTCTGGGACATGACATC
22606889 AACTTCGAGA
Statistics
Matches: 76, Mismatches: 5, Indels: 12
0.82 0.05 0.13
Matches are distributed among these distances:
45 5 0.07
46 22 0.29
47 31 0.41
48 18 0.24
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (44 bp):
TTATGAGAGCTAGTGTAAGACATGTCTGGGACATGACATCGGCA
Found at i:22611869 original size:22 final size:23
Alignment explanation
Indices: 22611843--22611888 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
22611833 CAACCAAACC
22611843 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
22611865 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
22611888 A
1 A
22611889 TGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:22612539 original size:22 final size:23
Alignment explanation
Indices: 22612513--22612558 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
22612503 CAACCAAACC
22612513 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
22612535 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
22612558 A
1 A
22612559 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:22612564 original size:23 final size:23
Alignment explanation
Indices: 22612520--22612564 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
22612510 ACCAATTCAA
*
22612520 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
22612543 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
22612565 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:22615597 original size:27 final size:27
Alignment explanation
Indices: 22615567--22615744 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
22615557 ATATTGAGTC
* * * *
22615567 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
22615594 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22615621 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
22615649 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
22615676 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
22615703 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22615730 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22615745 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:22615706 original size:82 final size:81
Alignment explanation
Indices: 22615588--22615743 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
22615578 TGCTATATAA
* *
22615588 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
22615653 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
22615670 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
22615734 CACTTAGTGC
65 CACTTAGTGC
22615744 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:22627790 original size:48 final size:48
Alignment explanation
Indices: 22627711--22628030 Score: 339
Period size: 48 Copynumber: 6.7 Consensus size: 48
22627701 TATGTGTGCT
* * *
22627711 AGTGTAAGACCATGTCTGGAATATGGAATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
*** * *
22627759 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGA-TATGTG-TCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CACATTATGAGAGCC
* * * * *
22627806 TAGTGTAAGACCATATTTGGGACATGGCAACGACCCCATTATGAGAGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* * *
22627855 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTTTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
*
22627903 AGTGTAAGACCATGT-TCGGGACATGGCATC-G--ACATTGAGATGAGAGCT
1 AGTGTAAGACCATGTCT-GGGACATGGCATCGGCCACATT---ATGAGAGCC
* * * *
22627951 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGA-CATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAGAGCC
22627999 AGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
22628031 TGATTTACCC
Statistics
Matches: 225, Mismatches: 34, Indels: 26
0.79 0.12 0.09
Matches are distributed among these distances:
45 5 0.02
47 5 0.02
48 209 0.93
49 4 0.02
51 1 0.00
52 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
Found at i:22627971 original size:144 final size:144
Alignment explanation
Indices: 22627711--22628028 Score: 442
Period size: 144 Copynumber: 2.2 Consensus size: 144
22627701 TATGTGTGCT
* * * *
22627711 AGTGTAAGACCATGTCTGGAATATGGAATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
* * * * * *
22627776 GGGACATGGCATCGGCGTTGATATGTGTCCTAGTGTAAGACCATATTTGGGACATGGCAACGACC
66 GGGACATGGCATCGACATTGAGATGAGACCTAGTGTAAGACCATATCTGGGACATGGCAACGACC
*
22627841 -CCATTATGAGAGCC
131 TCCA-CATGAGAGCC
* *
22627855 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTTTGAGAGTCAGTGTAAGACCATGT-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
* * *
22627919 CGGGACATGGCATCGACATTGAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGAC
66 -GGGACATGGCATCGACATTGAGATGAGACCTAGTGTAAGACCATATCTGGGACATGGCAACGAC
* *
22627984 CTCGACATGTGAGCC
130 CTCCACATGAGAGCC
22627999 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
22628029 GGTGATTTAC
Statistics
Matches: 154, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
143 1 0.01
144 151 0.98
145 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (144 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATCGACATTGAGATGAGACCTAGTGTAAGACCATATCTGGGACATGGCAACGACC
TCCACATGAGAGCC
Found at i:22629853 original size:38 final size:38
Alignment explanation
Indices: 22629784--22630075 Score: 395
Period size: 38 Copynumber: 7.6 Consensus size: 38
22629774 CAGCACAGAA
* *
22629784 CCTGCGGGACTTTAAGCTCGAATATAATACCAGCACTAAG
1 CCTGCGGGA-TTTAA-CCCGGATATAATACCAGCACTAAG
** *
22629824 CCTGTAGGATTTAACCCGGATATAGTACCAGCACTAAG
1 CCTGCGGGATTTAACCCGGATATAATACCAGCACTAAG
* *
22629862 CCTGCGAGATTTAACCCGGATATAATACCAGCACGAAG
1 CCTGCGGGATTTAACCCGGATATAATACCAGCACTAAG
* ** *
22629900 CCTGCGAGATAAAACCTGGATATAATACCAGCACTAAG
1 CCTGCGGGATTTAACCCGGATATAATACCAGCACTAAG
*
22629938 CCTGCGGGATTTAACCCGGATATAATACCAGCACGAAG
1 CCTGCGGGATTTAACCCGGATATAATACCAGCACTAAG
** *
22629976 CCTGCGGGATAAAACCCGGATATAATACCAGCACGAAG
1 CCTGCGGGATTTAACCCGGATATAATACCAGCACTAAG
** *
22630014 CCTGCGGGATAAAACCCGAATATAATACCAGCACTAAG
1 CCTGCGGGATTTAACCCGGATATAATACCAGCACTAAG
*
22630052 CCTGCGGGATTTAACCTGGATATA
1 CCTGCGGGATTTAACCCGGATATA
22630076 CATCAAATAT
Statistics
Matches: 225, Mismatches: 27, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
38 213 0.95
39 5 0.02
40 7 0.03
ACGTcount: A:0.34, C:0.25, G:0.21, T:0.20
Consensus pattern (38 bp):
CCTGCGGGATTTAACCCGGATATAATACCAGCACTAAG
Found at i:22629938 original size:114 final size:114
Alignment explanation
Indices: 22629802--22630075 Score: 449
Period size: 114 Copynumber: 2.4 Consensus size: 114
22629792 ACTTTAAGCT
** * *
22629802 CGAATATAATACCAGCACTAAGCCTGTAGGATTTAACCCGGATATAGTACCAGCACTAAGCCTGC
1 CGAATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGC
**
22629867 GAGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGAGATAAAACC
66 GAGATAAAACCCGGATATAATACCAGCACGAAGCCTGCGAGATAAAACC
* *
22629916 TGGATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGC
1 CGAATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGC
* *
22629981 GGGATAAAACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACC
66 GAGATAAAACCCGGATATAATACCAGCACGAAGCCTGCGAGATAAAACC
*
22630030 CGAATATAATACCAGCACTAAGCCTGCGGGATTTAACCTGGATATA
1 CGAATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGATATA
22630076 CATCAAATAT
Statistics
Matches: 147, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 147 1.00
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.19
Consensus pattern (114 bp):
CGAATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGC
GAGATAAAACCCGGATATAATACCAGCACGAAGCCTGCGAGATAAAACC
Found at i:22635612 original size:38 final size:38
Alignment explanation
Indices: 22635526--22635796 Score: 319
Period size: 38 Copynumber: 7.1 Consensus size: 38
22635516 GAATCCAGTC
* *
22635526 ACCAGCACAGAA-CCTGCGGGACTTTAAGCTCGAATATAAT
1 ACCAGCAC-GAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* * *
22635566 ACCAGCACTAAGCCTGCGGGATTTAACCCAGACATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * * *
22635604 ACAAGCACTAAGCCTGTGGAATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * * *
22635642 ACTAGCACTAAGCCAGTGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* **
22635680 ACTAGCACGAAGCCTGCGGGATAAAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
**
22635718 ACCAGCACGAAGCCTGCGGGATAAAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
** *
22635756 ACCAGCACGAAGCCTGCGGGATAAAACCTGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
22635794 ACC
1 ACC
22635797 CGGATATAAT
Statistics
Matches: 210, Mismatches: 20, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
38 186 0.89
39 7 0.03
40 17 0.08
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.18
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:22635801 original size:13 final size:13
Alignment explanation
Indices: 22635785--22635809 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22635775 GATAAAACCT
22635785 GGATATAATACCC
1 GGATATAATACCC
22635798 GGATATAATACC
1 GGATATAATACC
22635810 AGCACTAAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (13 bp):
GGATATAATACCC
Found at i:22635810 original size:51 final size:51
Alignment explanation
Indices: 22635738--22635847 Score: 175
Period size: 51 Copynumber: 2.2 Consensus size: 51
22635728 AGCCTGCGGG
* *
22635738 ATAAAACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCTGGAT
1 ATAATACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGAT
* **
22635789 ATAATACCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGAT
22635840 ATAATACC
1 ATAATACC
22635848 AGCACGAAGC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (51 bp):
ATAATACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGAT
Found at i:22635845 original size:38 final size:38
Alignment explanation
Indices: 22635789--22635956 Score: 255
Period size: 38 Copynumber: 4.4 Consensus size: 38
22635779 AAACCTGGAT
* *
22635789 ATAATACCCGGATATAATACCAGCACTAAGCCTGCGGG
1 ATAAAACCCGGATATAATACCAGCACGAAGCCTGCGGG
**
22635827 ATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
1 ATAAAACCCGGATATAATACCAGCACGAAGCCTGCGGG
*
22635865 ATAAAACCCGGATATAATACTAGCACGAAGCCTGCGGG
1 ATAAAACCCGGATATAATACCAGCACGAAGCCTGCGGG
*
22635903 ATAAAACCCGGATATAATACCAGCACTAAGCCTGCGGG
1 ATAAAACCCGGATATAATACCAGCACGAAGCCTGCGGG
** *
22635941 ATTTAACCTGGATATA
1 ATAAAACCCGGATATA
22635957 CATCAAATAT
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 118 1.00
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.19
Consensus pattern (38 bp):
ATAAAACCCGGATATAATACCAGCACGAAGCCTGCGGG
Found at i:22635856 original size:89 final size:89
Alignment explanation
Indices: 22635700--22635884 Score: 325
Period size: 89 Copynumber: 2.1 Consensus size: 89
22635690 AGCCTGCGGG
*
22635700 ATAAAACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGATATAATACCAGCACG
1 ATAATACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGATATAATACCAGCACG
*
22635765 AAGCCTGCGGGATAAAACCTGGAT
66 AAGCCTGCGGGATAAAACCCGGAT
* **
22635789 ATAATACCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACG
1 ATAATACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGATATAATACCAGCACG
22635854 AAGCCTGCGGGATAAAACCCGGAT
66 AAGCCTGCGGGATAAAACCCGGAT
22635878 ATAATAC
1 ATAATAC
22635885 TAGCACGAAG
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
89 91 1.00
ACGTcount: A:0.37, C:0.25, G:0.21, T:0.17
Consensus pattern (89 bp):
ATAATACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGATATAATACCAGCACG
AAGCCTGCGGGATAAAACCCGGAT
Found at i:22635893 original size:127 final size:127
Alignment explanation
Indices: 22635667--22635923 Score: 460
Period size: 127 Copynumber: 2.0 Consensus size: 127
22635657 GTGGGATTTA
*
22635667 ACCCGGATATAATACTAGCACGAAGCCTGCGGGATAAAACCCGGATATAATACCAGCACGAAGCC
1 ACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGATATAATACCAGCACGAAGCC
*
22635732 TGCGGGATAAAACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCTGGATATAAT
66 TGCGGGATAAAACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGATATAAT
* **
22635794 ACCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
1 ACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGATATAATACCAGCACGAAGCC
*
22635859 TGCGGGATAAAACCCGGATATAATACTAGCACGAAGCCTGCGGGATAAAACCCGGATATAAT
66 TGCGGGATAAAACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGATATAAT
22635921 ACC
1 ACC
22635924 AGCACTAAGC
Statistics
Matches: 124, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
127 124 1.00
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.16
Consensus pattern (127 bp):
ACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGATATAATACCAGCACGAAGCC
TGCGGGATAAAACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGATATAAT
Found at i:22635901 original size:165 final size:165
Alignment explanation
Indices: 22635629--22635956 Score: 584
Period size: 165 Copynumber: 2.0 Consensus size: 165
22635619 GTGGAATTTA
* * *
22635629 ACCCGGATATAATACTAGCACTAAGCCAGTGGGATTTAACCCGGATATAATACTAGCACGAAGCC
1 ACCCGGATATAATACCAGCACTAAGCCAGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
22635694 TGCGGGATAAAACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGATATAATACC
66 TGCGGGATAAAACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGATATAATACC
22635759 AGCACGAAGCCTGCGGGATAAAACCTGGATATAAT
131 AGCACGAAGCCTGCGGGATAAAACCTGGATATAAT
*
22635794 ACCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
1 ACCCGGATATAATACCAGCACTAAGCCAGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
*
22635859 TGCGGGATAAAACCCGGATATAATACTAGCACGAAGCCTGCGGGATAAAACCCGGATATAATACC
66 TGCGGGATAAAACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGATATAATACC
* **
22635924 AGCACTAAGCCTGCGGGATTTAACCTGGATATA
131 AGCACGAAGCCTGCGGGATAAAACCTGGATATA
22635957 CATCAAATAT
Statistics
Matches: 155, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
165 155 1.00
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.18
Consensus pattern (165 bp):
ACCCGGATATAATACCAGCACTAAGCCAGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
TGCGGGATAAAACCCGGATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGGATATAATACC
AGCACGAAGCCTGCGGGATAAAACCTGGATATAAT
Found at i:22640686 original size:11 final size:11
Alignment explanation
Indices: 22640672--22640721 Score: 66
Period size: 11 Copynumber: 4.5 Consensus size: 11
22640662 AGATAAATAT
22640672 TATTTTATTAA
1 TATTTTATTAA
*
22640683 TATTTTAATGAA
1 TATTTT-ATTAA
22640695 -ATATTTATTAA
1 TAT-TTTATTAA
22640706 TATTTTATTAA
1 TATTTTATTAA
22640717 TATTT
1 TATTT
22640722 ATTTAGTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
11 25 0.74
12 9 0.26
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:22640701 original size:23 final size:21
Alignment explanation
Indices: 22640675--22640724 Score: 73
Period size: 23 Copynumber: 2.3 Consensus size: 21
22640665 TAAATATTAT
22640675 TTTATTAATATTTTAATGAAATA
1 TTTATTAATATTTT-AT-AAATA
*
22640698 TTTATTAATATTTTATTAATA
1 TTTATTAATATTTTATAAATA
22640719 TTTATT
1 TTTATT
22640725 TAGTATATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 10 0.38
22 2 0.08
23 14 0.54
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TTTATTAATATTTTATAAATA
Found at i:22642487 original size:32 final size:33
Alignment explanation
Indices: 22642403--22642515 Score: 149
Period size: 33 Copynumber: 3.5 Consensus size: 33
22642393 TACCTAAAAG
* *
22642403 GTACAACTGGAAAAGGAAATGTACACTGTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
* *
22642436 GTGCAACTTAAAAAGGAAATGTACACTTTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
* *
22642469 GTAC-ACTTGAAAAGGAAATGTACGCCTTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
22642501 GTACAA-TGTGAAAAG
1 GTACAACT-TGAAAAG
22642516 TGGTAGCTTC
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
32 30 0.43
33 40 0.57
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (33 bp):
GTACAACTTGAAAAGGAAATGTACACTTTGTGT
Found at i:22642545 original size:31 final size:31
Alignment explanation
Indices: 22642508--22642681 Score: 215
Period size: 31 Copynumber: 5.5 Consensus size: 31
22642498 TGTGTACAAT
22642508 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
22642539 GTGAAAAGTGGTAGCTTCGACTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * * *
22642570 GTGAAAGGTAGTAGCTTCGACTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * *
22642601 GTGAAAAGTGGTAGCTCCAGCTACCTGACCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
22642632 GTGAATAGTGGTAGCTTCGGCTACAAGTGA-CA
1 GTGAAAAGTGGTAGCTTCGGCTAC--CTGATCA
*
22642664 GGTGATAAGTGGTAGCTT
1 -GTGAAAAGTGGTAGCTT
22642682 TAGCTACACT
Statistics
Matches: 123, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
31 103 0.84
32 2 0.02
33 18 0.15
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:22642776 original size:27 final size:27
Alignment explanation
Indices: 22642745--22642809 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
22642735 TAGTTGAACA
22642745 ATGGCAAAGTGATAAAGTGTGCC-AAT
1 ATGGCAAAGTGATAAAGTGTGCCAAAT
*
22642771 CATGGCAAAGTGATATAGTGTGCCAAAT
1 -ATGGCAAAGTGATAAAGTGTGCCAAAT
*
22642799 ATAGCAAAGTG
1 ATGGCAAAGTG
22642810 TTCAGTGATC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 32 0.91
28 3 0.09
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.23
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAT
Found at i:22644687 original size:27 final size:26
Alignment explanation
Indices: 22644594--22644691 Score: 108
Period size: 27 Copynumber: 3.7 Consensus size: 26
22644584 TACATTACAA
* *
22644594 GGGTATTTTAGCAATATT-ACAAATTG
1 GGGTATTTTGGTAAT-TTCACAAATTG
*
22644620 GGGATATTTTAGTAATTTCACAAATTG
1 GGG-TATTTTGGTAATTTCACAAATTG
*
22644647 AGGGTATTTTGGTACTTTCACAAATTAG
1 -GGGTATTTTGGTAATTTCACAAATT-G
*
22644675 GGGTATTTCGGTAATTT
1 GGGTATTTTGGTAATTT
22644692 TAAAACTCGA
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
26 5 0.08
27 54 0.86
28 4 0.06
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTCACAAATTG
Found at i:22644704 original size:54 final size:53
Alignment explanation
Indices: 22644564--22644723 Score: 144
Period size: 54 Copynumber: 3.0 Consensus size: 53
22644554 TTTTACCCTA
* * *
22644564 TAGGGGTATTTCGGTAATTTTACATTACAAGGGTATTTTAGCAATATTACAAAT
1 TAGGGGTATTTCGGTAATTTTAAAAT-CGAGGGTATTTTAGCAATATTACAAAT
** * * * * *
22644618 T-GGGGATATTTTAGTAATTTCACAAATTGAGGGTATTTTGGTACT-TTCACAAAT
1 TAGGGG-TATTTCGGTAATTTTA-AAATCGAGGGTATTTTAGCAATATT-ACAAAT
* * *
22644672 TAGGGGTATTTCGGTAATTTTAAAACTCGAGGGTATGTTAGTAATTTTACAA
1 TAGGGGTATTTCGGTAATTTTAAAA-TCGAGGGTATTTTAGCAATATTACAA
22644724 GTCCGGGGTC
Statistics
Matches: 83, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
53 9 0.11
54 66 0.80
55 8 0.10
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (53 bp):
TAGGGGTATTTCGGTAATTTTAAAATCGAGGGTATTTTAGCAATATTACAAAT
Found at i:22653534 original size:27 final size:27
Alignment explanation
Indices: 22653486--22653644 Score: 191
Period size: 27 Copynumber: 5.9 Consensus size: 27
22653476 GCGAAGCTGC
* * *
22653486 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
*
22653513 CAGATATTGTGGAAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
22653539 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
22653566 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
22653593 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
22653620 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
22653645 GATGCTTCCT
Statistics
Matches: 115, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
26 10 0.09
27 101 0.88
28 4 0.03
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:22653586 original size:54 final size:54
Alignment explanation
Indices: 22653486--22653644 Score: 241
Period size: 54 Copynumber: 3.0 Consensus size: 54
22653476 GCGAAGCTGC
* * * * *
22653486 CAGATAT-TGTGACAAAGTCACCAGATACAGAT-ATTGTGGAAGAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGAA
*
22653539 CAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
22653593 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
22653645 GATGCTTCCT
Statistics
Matches: 97, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
53 12 0.12
54 85 0.88
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
Found at i:22655297 original size:26 final size:26
Alignment explanation
Indices: 22655261--22655318 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
22655251 TGAAATTCTC
22655261 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
22655287 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
22655313 ATCATG
1 ATCATG
22655319 AAATCCTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:22656943 original size:27 final size:27
Alignment explanation
Indices: 22656912--22657287 Score: 228
Period size: 27 Copynumber: 13.9 Consensus size: 27
22656902 TAGAATACTT
**
22656912 TAGTTTACCAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * *
22656939 TAGTTTGTAAAATTACTAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
*
22656966 TGGTTTATAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
*
22656993 TAGTTTGTAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * *
22657020 -CGATTTATAAAATTACCTAAATA-TCC
1 TAG-TTTATAAAATTACCAAAATACCCC
* *
22657046 TCGATTTGA-AAAATTACCTAAATA-CCC
1 TAG-TTT-ATAAAATTACCAAAATACCCC
** * *
22657073 TCAGTTTGCAAAATTACTAAAATA-CCT
1 T-AGTTTATAAAATTACCAAAATACCCC
* * ** * *
22657100 TCGATTTGTAAAATTACTGAAATACTCA
1 TAG-TTTATAAAATTACCAAAATACCCC
** * ***
22657128 T-GTAAGATAGAATTACCATTTTA-CCC
1 TAGT-TTATAAAATTACCAAAATACCCC
* * * *
22657154 TCGATTTACAAAATTACTAAAATACCCT
1 TAG-TTTATAAAATTACCAAAATACCCC
* *
22657182 TAGTTTACAAAATTACCGAAATA-CCC
1 TAGTTTATAAAATTACCAAAATACCCC
* ** *
22657208 TCGATCAATAAAATTACCAAAATATCCC
1 TAG-TTTATAAAATTACCAAAATACCCC
* *
22657236 TGGTTTGTAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * * *
22657263 TAATTTGTGAAATTACCGAAATACC
1 TAGTTTATAAAATTACCAAAATACC
22657288 TTTGTAGGGT
Statistics
Matches: 272, Mismatches: 64, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
26 11 0.04
27 247 0.91
28 14 0.05
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
TAGTTTATAAAATTACCAAAATACCCC
Found at i:22656986 original size:54 final size:54
Alignment explanation
Indices: 22656921--22657287 Score: 296
Period size: 54 Copynumber: 6.8 Consensus size: 54
22656911 TTAGTTTACC
*
22656921 AAATTACCAAAATACCC-CTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGA-TTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * ** *
22656975 AAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCCGATTTATA
1 AAATTACCAAAATACCCTCGA-TTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * ** **
22657029 AAATTACCTAAATATCCTCGATTTGAAAAATTACCT-AAATACCCTCAGTTTGCA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTA-CTAAAATACCCTTGGTTTATA
* * * * * **
22657083 AAATTACTAAAATACCTTCGATTTGTAAAATTACTGAAATACTCAT-GTAAGATA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGGT-TTATA
* *** ** * *
22657137 GAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGGTTTATA
* *** * *
22657191 AAATTACCGAAATACCCTCGATCAATAAAATTACCAAAATATCCC-TGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATA-CCCTTGGTTTATA
* * **
22657245 AAATTACCAAAATACCC-CTAATTTGTGAAATTACCGAAATACC
1 AAATTACCAAAATACCCTC-GATTTGTAAAATTACTAAAATACC
22657288 TTTGTAGGGT
Statistics
Matches: 247, Mismatches: 59, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
53 7 0.03
54 232 0.94
55 8 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:22657303 original size:27 final size:27
Alignment explanation
Indices: 22657273--22657709 Score: 592
Period size: 27 Copynumber: 16.3 Consensus size: 27
22657263 TAATTTGTGA
**
22657273 AATTACCGAAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
22657300 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
22657327 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
22657354 AATTGCCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
22657381 AATT-TCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
22657407 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
22657434 AATTACCGGAATGCCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
22657461 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
22657488 AATTACTGGAATGCCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
22657515 AATTACCGGAATGCCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
22657542 AATTATCTCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
22657569 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
22657596 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
22657623 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
22657650 AATTACTGAAATA-CCCTGGTAGGGTGG
1 AATTACCGAAATACCCCT-GTAGGGTAG
* * * * *
22657677 AATTATCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
22657703 AATTACC
1 AATTACC
22657710 ATTTTGCCCC
Statistics
Matches: 364, Mismatches: 44, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
26 41 0.11
27 323 0.89
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:22657305 original size:81 final size:81
Alignment explanation
Indices: 22656921--22657289 Score: 297
Period size: 81 Copynumber: 4.6 Consensus size: 81
22656911 TTAGTTTACC
* ** * *
22656921 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGT-TTATAAAATTACCAA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACCGAAATA-CCTTCGTATGATAAAATTACCAA
*
22656985 AATACCC-CTAGTTTGTA
65 AATACCCTC-AGTTTGCA
** * * * *
22657002 AAATTACCAAAATACCCCCGATTTATAAAATTACCTAAATATCC-TCGATTTGA-AAAATTACCT
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACCGAAATA-CCTTCG-TATGATAAAATTACCA
22657065 AAATACCCTCAGTTTGCA
64 AAATACCCTCAGTTTGCA
* * * * * * *
22657083 AAATTACTAAAATA-CCTTCGATTTGTAAAATTACTGAAATACTCAT-GTAAGATAGAATTACCA
1 AAATTACCAAAATACCCCT-AATTTGTAAAATTACCGAAATAC-CTTCGTATGATAAAATTACCA
*** *
22657146 TTTTACCCTC-GATTTACA
64 AAATACCCTCAG-TTTGCA
* * * ** * *
22657164 AAATTACTAAAATACCCTTAGTTTACAAAATTACCGAAATACCCTCG-ATCAATAAAATTACCAA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACCGAAATACCTTCGTAT-GATAAAATTACCAA
* *
22657228 AATATCCCT-GGTTTGTA
65 AATA-CCCTCAGTTTGCA
*
22657245 AAATTACCAAAATACCCCTAATTTGTGAAATTACCGAAATACCTT
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACCGAAATACCTT
22657290 TGTAGGGTAG
Statistics
Matches: 229, Mismatches: 46, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
80 12 0.05
81 204 0.89
82 13 0.06
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAATTTGTAAAATTACCGAAATACCTTCGTATGATAAAATTACCAAA
ATACCCTCAGTTTGCA
Found at i:22658188 original size:22 final size:22
Alignment explanation
Indices: 22658136--22658200 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
22658126 TTAAAGCCTT
22658136 CTGATTATGGCTCTGTGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
22658158 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
22658180 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
22658201 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:22658389 original size:27 final size:27
Alignment explanation
Indices: 22658359--22658460 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
22658349 ATTCTGTTAA
* *
22658359 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
22658386 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
22658413 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
22658440 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
22658461 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:22658636 original size:6 final size:6
Alignment explanation
Indices: 22658621--22658681 Score: 63
Period size: 6 Copynumber: 10.0 Consensus size: 6
22658611 ATTATGTTAC
* *
22658621 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATAT -TGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGAT-T CTGATT CTGATT
22658670 CTGATT CTGATT
1 CTGATT CTGATT
22658682 ATAGTTCTGA
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
5 3 0.06
6 39 0.83
7 3 0.06
8 1 0.02
9 1 0.02
ACGTcount: A:0.20, C:0.15, G:0.16, T:0.49
Consensus pattern (6 bp):
CTGATT
Found at i:22658653 original size:31 final size:31
Alignment explanation
Indices: 22658597--22658678 Score: 110
Period size: 31 Copynumber: 2.6 Consensus size: 31
22658587 TTGCATTCAC
* *
22658597 ATTCTGATTTTTTTATTATGTTACCTGATACTG
1 ATTCTGA--TTTTGATTCTGTTACCTGATACTG
*
22658630 ATTCTGATTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
22658661 ATTCTGATTCTGATTCTG
1 ATTCTGATTTTGATTCTG
22658679 ATTATAGTTC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
31 38 0.84
33 7 0.16
ACGTcount: A:0.20, C:0.13, G:0.15, T:0.52
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:22659954 original size:11 final size:11
Alignment explanation
Indices: 22659921--22659947 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
22659911 ATTATTGTTA
22659921 TGTTGCTATTT
1 TGTTGCTATTT
22659932 TGTTGCTATTT
1 TGTTGCTATTT
22659943 TGTTG
1 TGTTG
22659948 TTGTTTTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.22, T:0.63
Consensus pattern (11 bp):
TGTTGCTATTT
Found at i:22665488 original size:20 final size:20
Alignment explanation
Indices: 22665463--22665504 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
22665453 TTCATCTATA
22665463 CAACAATTCTTCAAGTTTTG
1 CAACAATTCTTCAAGTTTTG
22665483 CAACAATTCTTCAAGTTTTG
1 CAACAATTCTTCAAGTTTTG
22665503 CA
1 CA
22665505 TTTATTTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (20 bp):
CAACAATTCTTCAAGTTTTG
Found at i:22667899 original size:37 final size:37
Alignment explanation
Indices: 22667856--22667927 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
22667846 ACATGCCAGT
*
22667856 TGCTCATAAGAGCTAATCCACCCGATAACACGCCACA
1 TGCTCATAAGAGCTAATCCACCCAATAACACGCCACA
*
22667893 TGCTCATAAGAGCTAATCCACCTAATAACACGCCA
1 TGCTCATAAGAGCTAATCCACCCAATAACACGCCA
22667928 GATCAGGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.36, C:0.33, G:0.12, T:0.18
Consensus pattern (37 bp):
TGCTCATAAGAGCTAATCCACCCAATAACACGCCACA
Found at i:22672117 original size:27 final size:26
Alignment explanation
Indices: 22672087--22672211 Score: 126
Period size: 27 Copynumber: 4.7 Consensus size: 26
22672077 ACTAGATTTT
* * *
22672087 CCACGAAGGCTTCCATCTCTTAGTTCG
1 CCAC-AAGGCTTCCATTTCTTAGATCA
* *
22672114 CCACAAGGGCTTCTATTTCTTAAATCA
1 CCACAA-GGCTTCCATTTCTTAGATCA
* *
22672141 CCACAAATGCTTCCATTT-TTAGATCT
1 CCAC-AAGGCTTCCATTTCTTAGATCA
*
22672167 CCACAAAGGCTTCCATTTCATAGATCA
1 CCAC-AAGGCTTCCATTTCTTAGATCA
22672194 CCACAATGGCTTCCATTT
1 CCACAA-GGCTTCCATTT
22672212 TAGATACGTT
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
26 27 0.33
27 53 0.65
28 2 0.02
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (26 bp):
CCACAAGGCTTCCATTTCTTAGATCA
Found at i:22672178 original size:53 final size:53
Alignment explanation
Indices: 22672094--22672238 Score: 152
Period size: 53 Copynumber: 2.7 Consensus size: 53
22672084 TTTCCACGAA
* * * * *
22672094 GGCTTCCATCTCTTAGTTCGCCACAAGGGCTTCTATTTCTTAAATCACCACAAAT
1 GGCTTCCAT-TTTTAGATCTCCACAAAGGCTTCTATTTCATAAATCACCAC-AAT
* *
22672149 -GCTTCCATTTTTAGATCTCCACAAAGGCTTCCATTTCATAGATCACCACAAT
1 GGCTTCCATTTTTAGATCTCCACAAAGGCTTCTATTTCATAAATCACCACAAT
* *
22672201 GGCTTCCA-TTTTAGATACGT-TACAAAGGCTTTTATTTC
1 GGCTTCCATTTTTAGAT-C-TCCACAAAGGCTTCTATTTC
22672239 CTGATGTGTT
Statistics
Matches: 77, Mismatches: 10, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
52 11 0.14
53 57 0.74
54 9 0.12
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.35
Consensus pattern (53 bp):
GGCTTCCATTTTTAGATCTCCACAAAGGCTTCTATTTCATAAATCACCACAAT
Found at i:22672402 original size:23 final size:23
Alignment explanation
Indices: 22672375--22672421 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
22672365 TAACCCGCCA
*
22672375 GCCATAGTCTTAAAGGATATGGT
1 GCCATAGCCTTAAAGGATATGGT
* * *
22672398 GCCATGGCCTTATATGATATGGT
1 GCCATAGCCTTAAAGGATATGGT
22672421 G
1 G
22672422 ACATGGCCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.32
Consensus pattern (23 bp):
GCCATAGCCTTAAAGGATATGGT
Found at i:22677131 original size:20 final size:20
Alignment explanation
Indices: 22677106--22677150 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
22677096 CACTCCAAAT
22677106 TGTGGAAAAGCCACCAATAA
1 TGTGGAAAAGCCACCAATAA
* ** *
22677126 TGTGGACAAGCTGCTAATAA
1 TGTGGAAAAGCCACCAATAA
22677146 TGTGG
1 TGTGG
22677151 TCGAGCCACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.22
Consensus pattern (20 bp):
TGTGGAAAAGCCACCAATAA
Found at i:22681550 original size:10 final size:10
Alignment explanation
Indices: 22681528--22681574 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
22681518 CAATCTGTCG
*
22681528 AAAA-TAATA
1 AAAATTAATT
22681537 AAAATTAATT
1 AAAATTAATT
*
22681547 AAAATTTGATAT
1 AAAA-TTAAT-T
22681559 AAAATTAATT
1 AAAATTAATT
22681569 AAAATT
1 AAAATT
22681575 CAACAAGTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 4 0.12
10 15 0.47
11 8 0.25
12 5 0.16
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (10 bp):
AAAATTAATT
Found at i:22683669 original size:37 final size:37
Alignment explanation
Indices: 22683605--22683680 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
22683595 TTACAAGATA
22683605 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
22683642 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
22683679 AA
1 AA
22683681 CATCGATCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
36 4 0.11
37 30 0.86
38 1 0.03
ACGTcount: A:0.43, C:0.24, G:0.08, T:0.25
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:22689159 original size:27 final size:26
Alignment explanation
Indices: 22689128--22689211 Score: 78
Period size: 27 Copynumber: 3.1 Consensus size: 26
22689118 TTTAACTAGT
22689128 GAACCCTAGTTAGCCAAACCAACTGGC
1 GAACCCTAGTTA-CCAAACCAACTGGC
* * * *
22689155 GAACCCCAGTCCACCAAACCAATTGGT
1 GAACCCTAGT-TACCAAACCAACTGGC
* * *
22689182 GAACCCTGGTTCTCCAAATCAACTGGC
1 GAACCCTAGTT-ACCAAACCAACTGGC
22689209 GAA
1 GAA
22689212 TGCCATTCTA
Statistics
Matches: 44, Mismatches: 11, Indels: 4
0.75 0.19 0.07
Matches are distributed among these distances:
27 43 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.33, G:0.18, T:0.17
Consensus pattern (26 bp):
GAACCCTAGTTACCAAACCAACTGGC
Found at i:22689208 original size:54 final size:54
Alignment explanation
Indices: 22689126--22689241 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
22689116 ACTTTAACTA
*
22689126 GTGAACCCTAGTTAGCCAAACCAACTGGCGAACCCCAGTCCACCAAACCAATTG
1 GTGAACCCTAGTTAGCCAAACCAACTGGCGAACCCCAGTCCACAAAACCAATTG
* ** * ** * *
22689180 GTGAACCCTGGTTCTCCAAATCAACTGGCGAATGCCATTCTACAAAACCAATTG
1 GTGAACCCTAGTTAGCCAAACCAACTGGCGAACCCCAGTCCACAAAACCAATTG
*
22689234 GCGAACCC
1 GTGAACCC
22689242 CCTTACCACA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.32, C:0.33, G:0.17, T:0.18
Consensus pattern (54 bp):
GTGAACCCTAGTTAGCCAAACCAACTGGCGAACCCCAGTCCACAAAACCAATTG
Found at i:22695172 original size:44 final size:44
Alignment explanation
Indices: 22695123--22695258 Score: 138
Period size: 42 Copynumber: 3.2 Consensus size: 44
22695113 GATATCGTGC
* * * *
22695123 AAGACCGTGTCTAGGACACAGGCCTCGATTTGAGATTTACATGT
1 AAGACCATGTCTGGGACACAGGCATCGATCTGAGATTTACATGT
* *
22695167 AAGACCATGTCTGGGACATAGGCATCGTATCT--GATTT-CGTGT
1 AAGACCATGTCTGGGACACAGGCATCG-ATCTGAGATTTACATGT
* * *
22695209 AAGACCCTGTCTGGGATAGAGGCATCGATACTGA-A-TTACATGT
1 AAGACCATGTCTGGGACACAGGCATCGAT-CTGAGATTTACATGT
22695252 AAGACCA
1 AAGACCA
22695259 CATCTAGGAT
Statistics
Matches: 76, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
41 2 0.03
42 32 0.42
43 16 0.21
44 23 0.30
45 3 0.04
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (44 bp):
AAGACCATGTCTGGGACACAGGCATCGATCTGAGATTTACATGT
Found at i:22705709 original size:13 final size:13
Alignment explanation
Indices: 22705691--22705715 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22705681 AGCTAAGTAT
22705691 CACACGGCCATGG
1 CACACGGCCATGG
22705704 CACACGGCCATG
1 CACACGGCCATG
22705716 TCTGTTGGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.40, G:0.28, T:0.08
Consensus pattern (13 bp):
CACACGGCCATGG
Found at i:22707238 original size:27 final size:27
Alignment explanation
Indices: 22707207--22707268 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
22707197 AGAGATCGCT
* *
22707207 ACAAATGCTTTCATTTCATGATTTGCC
1 ACAAAGGCTTTCATTTCACGATTTGCC
* *
22707234 ACAAAGGCTTTCTTTTCACGGTTTGCC
1 ACAAAGGCTTTCATTTCACGATTTGCC
22707261 ACAAAGGC
1 ACAAAGGC
22707269 CATTCCATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (27 bp):
ACAAAGGCTTTCATTTCACGATTTGCC
Found at i:22708182 original size:6 final size:6
Alignment explanation
Indices: 22708171--22708357 Score: 129
Period size: 6 Copynumber: 30.8 Consensus size: 6
22708161 AACCAAAATG
* *
22708171 AGAATC AGAATC AGAATC AGTAA-C AGAATC AAAATC AGAATC A-ATGTTC
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA--ATC
* *
22708220 -GTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * *
22708268 AGAATC AGTAA-C AGAATC AGAACC AGAATC AGTATT AGTAA-C AGAATT
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* * *
22708316 AGAATC AGAATC AAAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
22708358 GTGAATGCAA
Statistics
Matches: 141, Mismatches: 22, Indels: 36
0.71 0.11 0.18
Matches are distributed among these distances:
5 12 0.09
6 116 0.82
7 10 0.07
8 3 0.02
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:22708271 original size:85 final size:85
Alignment explanation
Indices: 22708171--22708357 Score: 302
Period size: 85 Copynumber: 2.2 Consensus size: 85
22708161 AACCAAAATG
* * *
22708171 AGAATCAGAATCAGAATCAGTAACAGAATCAAAATCAGAATCAATGTTCGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAAAACCAGAATCAATATTAGTAACAGAATCAGAAT
* *
22708236 CAGAATCAGAATTAGGTGAC
66 CAGAATCAAAATTACGTGAC
* * *
22708256 AGAATCAGAATCAGAATCAGTAACAGAATCAGAACCAGAATCAGTATTAGTAACAGAATTAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAAAACCAGAATCAATATTAGTAACAGAATCAGAAT
22708321 CAGAATCAAAATTACGTGAC
66 CAGAATCAAAATTACGTGAC
22708341 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
22708358 GTGAATGCAA
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAAAACCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAAAATTACGTGAC
Found at i:22708512 original size:27 final size:26
Alignment explanation
Indices: 22708475--22708540 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
22708465 AGCATGGCTG
* *
22708475 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAAAGCCA
* *
22708501 CCAGATACAGATATTGTGGCAAAGCCA
1 CCAGA-ACAGATATCGTGACAAAGCCA
22708528 CCAGAATCAGATA
1 CCAGAA-CAGATA
22708541 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAAAGCCA
Found at i:22708545 original size:27 final size:27
Alignment explanation
Indices: 22708499--22708556 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
22708489 GTGACAGAGT
* *
22708499 CACCAGATACAGATATTGTGGCAAAGC
1 CACCAGATACAGATAATGTGGCAAACC
22708526 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
22708553 CACC
1 CACC
22708557 TAACAGAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.38, C:0.28, G:0.19, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:22708938 original size:27 final size:26
Alignment explanation
Indices: 22708859--22708941 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
22708849 TCGATCGGCC
* * *
22708859 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
22708885 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
22708912 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
22708939 AAC
1 AAC
22708942 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:22709348 original size:27 final size:27
Alignment explanation
Indices: 22709140--22709351 Score: 235
Period size: 27 Copynumber: 7.9 Consensus size: 27
22709130 GGGGCAAAAT
* * * *
22709140 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
22709167 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
22709194 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
22709221 GATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * **
22709248 GGTAATTCTATCCTATAATGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
22709275 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
22709302 GAAAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* **
22709329 AGTAATTCTACATTACAGGGGTA
1 GGTAATTCTACCCTACAGGGGTA
22709352 AAACGGTAAT
Statistics
Matches: 156, Mismatches: 29, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 156 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:22709377 original size:27 final size:27
Alignment explanation
Indices: 22709347--22709695 Score: 375
Period size: 27 Copynumber: 12.9 Consensus size: 27
22709337 TACATTACAG
22709347 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * *
22709374 GGGTAAAACGATAATTTTGTTAA-CTGA
1 GGGTAAAACGGTAATTCTGTAAATC-GA
* * * *
22709401 GGGTAAACCAGTAATTTTGTAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * ** *
22709428 TGGTAAAACGGTAATTTTACAAAAT-AA
1 GGGTAAAACGGTAATTCT-GTAAATCGA
** *
22709455 GGGTAAAACAATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
22709482 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
22709509 AGGTAAAACAGTAATTCTGTAAA-CTGA
1 GGGTAAAACGGTAATTCTGTAAATC-GA
22709536 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
22709563 GGGTAAAATGGTAATTCTATAAAAT-GA
1 GGGTAAAACGGTAATTCTGT-AAATCGA
*
22709590 GGGTAAAACGGTAATTCTGTAAATTGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* **
22709617 GGGTAAAACGATAATT-TAAAAAATCGA
1 GGGTAAAACGGTAATTCT-GTAAATCGA
* *
22709644 GAGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
22709671 GGGTAAAACGGTAATTCTGTAAATC
1 GGGTAAAACGGTAATTCTGTAAATC
22709696 AGGAGTACTT
Statistics
Matches: 268, Mismatches: 44, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
26 11 0.04
27 246 0.92
28 11 0.04
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
GGGTAAAACGGTAATTCTGTAAATCGA
Found at i:22711723 original size:6 final size:6
Alignment explanation
Indices: 22711712--22711843 Score: 114
Period size: 6 Copynumber: 21.8 Consensus size: 6
22711702 AACCAAAATG
* * *
22711712 AGAATC AGAATC AGAATC AGTAA-C AGAATC ATAATC AGAATA ATTG-TTC
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC A--GAATC
* *
22711761 -GTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
22711809 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGAAT
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAAT
22711844 GTGAATGCAA
Statistics
Matches: 103, Mismatches: 10, Indels: 26
0.74 0.07 0.19
Matches are distributed among these distances:
4 1 0.01
5 8 0.08
6 85 0.83
7 7 0.07
8 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:22711748 original size:30 final size:30
Alignment explanation
Indices: 22711712--22711843 Score: 146
Period size: 30 Copynumber: 4.4 Consensus size: 30
22711702 AACCAAAATG
22711712 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
* * *
22711742 ATAATCAGAATAATTG-TTC-GTAACAGAATC
1 AGAATCAGAATCA--GAATCAGTAACAGAATC
* *
22711772 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATCA-GTAACAGAATC
22711803 AGAATCAGAATCAGTAA-CAG-AATCAGAATC
1 AGAATCAGAATCAG-AATCAGTAA-CAGAATC
22711833 AGAATCAGAAT
1 AGAATCAGAAT
22711844 GTGAATGCAA
Statistics
Matches: 85, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
28 1 0.01
29 2 0.02
30 52 0.61
31 27 0.32
32 3 0.04
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATCAGTAACAGAATC
Found at i:22711997 original size:27 final size:26
Alignment explanation
Indices: 22711960--22712025 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
22711950 AGCATGGCTG
*
22711960 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
22711986 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
22712013 CCAGAATCAGATA
1 CCAGAA-CAGATA
22712026 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:22712030 original size:27 final size:27
Alignment explanation
Indices: 22711960--22712033 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
22711950 AGCATGGCTG
* *
22711960 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
22711986 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
22712013 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
22712034 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:22712040 original size:27 final size:27
Alignment explanation
Indices: 22711984--22712041 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
22711974 GTGACAGAGT
* * *
22711984 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
22712011 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
22712038 CACC
1 CACC
22712042 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:22712246 original size:22 final size:22
Alignment explanation
Indices: 22712198--22712256 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
22712188 GTAAATACGT
*
22712198 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
22712220 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
22712242 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
22712257 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:22712409 original size:27 final size:28
Alignment explanation
Indices: 22712374--22712426 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
22712364 CACCAAATAC
*
22712374 ATATATTATGGTAGAGCCACCAGAACAG
1 ATATATTATGGCAGAGCCACCAGAACAG
*
22712402 ATAT-TTATGGCATAGCCACCAGAAC
1 ATATATTATGGCAGAGCCACCAGAAC
22712427 GCTTCCTCCG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.23
Consensus pattern (28 bp):
ATATATTATGGCAGAGCCACCAGAACAG
Found at i:22712697 original size:54 final size:54
Alignment explanation
Indices: 22712627--22712833 Score: 236
Period size: 54 Copynumber: 3.8 Consensus size: 54
22712617 GGCAAAATGG
* * * ** * *
22712627 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGAGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCGA
* * * *
22712681 TATTTCTACCCTACAAGGGTGTTTCAATAATTCTACCCTATAGGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCGA
* * *
22712735 TAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGA
1 TAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTATAGGGGTATTTC-GA
* * **
22712790 -AATCCTACCCTACAGGGGTATTTCAATAATTCTACATTATAGGG
1 TAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTATAGGG
22712834 TAAAACAGTA
Statistics
Matches: 127, Mismatches: 25, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
54 126 0.99
55 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (54 bp):
TAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCGA
Found at i:22712824 original size:27 final size:27
Alignment explanation
Indices: 22712627--22712824 Score: 193
Period size: 27 Copynumber: 7.3 Consensus size: 27
22712617 GGCAAAATGG
* * * * *
22712627 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
*
22712654 TAATTCTACCCTACAGGAGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
* * * *
22712681 TATTTCTACCCTACAAGGGTGTTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
* * *
22712708 TAATTCTACCCTATAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* * *
22712735 TAATTCTATCCTATAAGGGTATTTC-A
1 TAATTCTACCCTACAGGGGTATTTCGA
*
22712761 GTAATTCTACCCTATAGGGGTATTTCGGA
1 -TAATTCTACCCTACAGGGGTATTTC-GA
* *
22712790 -AATCCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
22712816 TAATTCTAC
1 TAATTCTAC
22712825 ATTATAGGGT
Statistics
Matches: 139, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
26 1 0.01
27 137 0.99
29 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:22712863 original size:27 final size:27
Alignment explanation
Indices: 22712830--22713179 Score: 409
Period size: 27 Copynumber: 13.0 Consensus size: 27
22712820 TCTACATTAT
* *
22712830 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* * *
22712857 AGGGTAAAACGATAATTTTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTATAAATC-G
* * * *
22712884 ACGGTAAACCAGTAATTCTATAAATCA
1 AGGGTAAAACGGTAATTCTATAAATCG
* *
22712911 AGGGTAAAACGGTAATTTTACAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
*
22712938 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
*
22712965 AGGGTAAAACGATAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
**
22712992 AGGGTAAAATAGTAATTCTATAAA-CTG
1 AGGGTAAAACGGTAATTCTATAAATC-G
* *
22713019 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
*
22713046 AGGGTAAAACGATAATTCTATAAA-CTG
1 AGGGTAAAACGGTAATTCTATAAATC-G
* *
22713073 AGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* * * *
22713100 ATGGTAAAACGATAATTTTAAAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* *
22713127 AGGGTAAAATGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
*
22713154 AGGGTAAAACGGTAAATCTATAAATC
1 AGGGTAAAACGGTAATTCTATAAATC
22713180 AGGAGTACTT
Statistics
Matches: 272, Mismatches: 45, Indels: 12
0.83 0.14 0.04
Matches are distributed among these distances:
26 3 0.01
27 266 0.98
28 3 0.01
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTATAAATCG
Found at i:22719844 original size:105 final size:104
Alignment explanation
Indices: 22719576--22719855 Score: 375
Period size: 105 Copynumber: 2.7 Consensus size: 104
22719566 GTATATGCAC
* * * ** *
22719576 TAGTGGCGTTTTATATAAAACGCAGCAATATTTCAGCATTAGCGGCGTTTGCCATAAAACGCCGC
1 TAGTGGCGTTTTATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCATAAAACGCCGC
* *
22719641 TAAATTGTTGAGCAAAACGGCGTCGTTATAGAGGGGCAT
66 AAAATTGTTGAGCAAAACGGCGTCGTTATAGAGAGGCAT
* * *
22719680 TAGTGGCGTTTTAATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTCTCTTAAAACGCTG
1 TAGTGGCGTTTT-ATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCATAAAACGCCG
*
22719745 CAAAATTGTTGAGGAAAACGGCGTCGTTATATG-GAGGCAT
65 CAAAATTGTTGAGCAAAACGGCGTCGTTATA-GAGAGGCAT
* *
22719785 TAGTGGCGTTTGTATGTAAAACGCCGCAATATATCATAATTAACGGCGTTTGTTC-TAAAACACC
1 TAGTGGCGTTT-TATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTG-TCATAAAACGCC
*
22719849 ACAAAAT
64 GCAAAAT
22719856 GTTATGTTAT
Statistics
Matches: 155, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
104 12 0.08
105 139 0.90
106 4 0.03
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (104 bp):
TAGTGGCGTTTTATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCATAAAACGCCGC
AAAATTGTTGAGCAAAACGGCGTCGTTATAGAGAGGCAT
Found at i:22720038 original size:19 final size:21
Alignment explanation
Indices: 22720000--22720044 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
22719990 TTAGCTAGGG
*
22720000 TTTAGGATTTAAGCTTTTGG-T
1 TTTAGGATATAA-CTTTTGGAT
22720021 TTTAGGATATAA-TTTTGGAT
1 TTTAGGATATAACTTTTGGAT
22720041 TTTA
1 TTTA
22720045 ATTTATAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 6 0.27
20 5 0.23
21 11 0.50
ACGTcount: A:0.24, C:0.02, G:0.20, T:0.53
Consensus pattern (21 bp):
TTTAGGATATAACTTTTGGAT
Found at i:22724009 original size:46 final size:45
Alignment explanation
Indices: 22723956--22724131 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 45
22723946 TATTTGGGCA
*
22723956 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
22724002 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
22724049 TCCGAGCTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
22724095 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22724132 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 4 0.04
46 62 0.60
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:22724111 original size:93 final size:93
Alignment explanation
Indices: 22723952--22724124 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
22723942 AGGATATTTG
* * * *
22723952 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCCAACTCGTTGAG
*
22724017 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
22724045 GGCATCCGAGCTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCAAACG-CCCAAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCCAA-CTCGTTGA
22724109 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
22724125 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
92 4 0.06
93 68 0.94
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCCAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:22727072 original size:29 final size:29
Alignment explanation
Indices: 22727021--22727106 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 29
22727011 CATAGTATCG
* *
22727021 TATCTTGGGTTTCTTTATCCTGGATCTTT-
1 TATCTTGGATTTCTTTATTCTGGAT-TTTC
*
22727050 TAT-TCTGGATTTCTTTATTCTGGGTTTTC
1 TATCT-TGGATTTCTTTATTCTGGATTTTC
22727079 TATCTTGGATTTCTTTATTC-GG-TTTTC
1 TATCTTGGATTTCTTTATTCTGGATTTTC
22727106 T
1 T
22727107 TGTTATCTTT
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
27 6 0.12
28 6 0.12
29 38 0.75
30 1 0.02
ACGTcount: A:0.10, C:0.15, G:0.16, T:0.58
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCTGGATTTTC
Found at i:22727107 original size:14 final size:15
Alignment explanation
Indices: 22727030--22727107 Score: 74
Period size: 14 Copynumber: 5.4 Consensus size: 15
22727020 GTATCTTGGG
*
22727030 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
22727045 TCT-TTTATTCTGGA
1 TTTCTTTATTCTGGA
*
22727059 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
22727074 TTT-TCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
22727088 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
22727102 TTTCTT
1 TTTCTT
22727108 GTTATCTTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
13 2 0.04
14 29 0.57
15 18 0.35
16 2 0.04
ACGTcount: A:0.10, C:0.15, G:0.14, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:22729501 original size:46 final size:46
Alignment explanation
Indices: 22729448--22729623 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
22729438 TATTTGGGCA
22729448 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *** * *
22729494 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* * *
22729541 TCTGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
22729587 -CCCAAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22729624 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 21, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 60 0.59
47 29 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22729603 original size:93 final size:93
Alignment explanation
Indices: 22729444--22729616 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
22729434 AGGATATTTG
* *
22729444 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCCAACTCATTGAG
*
22729509 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
22729537 GGCATCTGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG-CCCAAGCTCATTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCCAA-CTCATTGA
22729601 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
22729617 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCCAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:22732255 original size:118 final size:115
Alignment explanation
Indices: 22732126--22732460 Score: 437
Period size: 118 Copynumber: 3.0 Consensus size: 115
22732116 TTTTGTTCTC
* *
22732126 TTTTATTTTATTTTCAAATTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTT
1 TTTTATTTTATTTT-AAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
22732191 TATTTTTTTTGAATCACGAAAAATAATTTTAACATTTTATTTTATTTTAAAT
65 TATTTTTTTTGAATCACGAAAAATAATTTTAACATTTTATTTTATTTT-AAT
22732243 ATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATT
1 -TTTTATTTTATTTTAA-ATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATT
* **
22732308 TCATTTAATTTGAATCACGAAAAATAA-TTT--CA----A---TATTTT-A-
64 TTATTTTTTTTGAATCACGAAAAATAATTTTAACATTTTATTTTATTTTAAT
22732348 TTTT-TTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATA-TT
1 TTTTATTTTATTTTAA-ATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* * * * *
22732411 TCTTTTTTTTGAATCAAGAAAAATAATTTCAATATTTTATTATATTTTAA
65 TATTTTTTTTGAATCACGAAAAATAATTTTAACATTTTATTTTATTTTAA
22732461 CATTACCTAA
Statistics
Matches: 193, Mismatches: 12, Indels: 29
0.82 0.05 0.12
Matches are distributed among these distances:
102 23 0.12
103 59 0.31
104 4 0.02
105 1 0.01
106 1 0.01
108 6 0.03
109 1 0.01
111 1 0.01
112 6 0.03
113 1 0.01
115 2 0.01
117 5 0.03
118 83 0.43
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.53
Consensus pattern (115 bp):
TTTTATTTTATTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTT
ATTTTTTTTGAATCACGAAAAATAATTTTAACATTTTATTTTATTTTAAT
Found at i:22732306 original size:62 final size:61
Alignment explanation
Indices: 22732126--22732318 Score: 211
Period size: 62 Copynumber: 3.2 Consensus size: 61
22732116 TTTTGTTCTC
*
22732126 TTTTATTTTATTTTCAAATTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATA
1 TTTTATTTTATTTT-AAATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATA
* * * * * *
22732188 TTTTATTTT-TTTTGAATCA-CGAA--AAA-TAATTTTAACATTT-TA-TTTTATTTTAAATA
1 TTTTATTTTATTTTAAATTACCTAATTAAATTAA-ATT-ATATTTAAAGTTTTATTTTAAATA
*
22732244 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATA
1 TTTTATTTTATTTTAA-ATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATA
* *
22732306 TTTCATTTAATTT
1 TTTTATTTTATTT
22732319 GAATCACGAA
Statistics
Matches: 105, Mismatches: 16, Indels: 20
0.74 0.11 0.14
Matches are distributed among these distances:
56 25 0.24
57 11 0.10
58 8 0.08
59 6 0.06
60 8 0.08
61 10 0.10
62 37 0.35
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (61 bp):
TTTTATTTTATTTTAAATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATA
Found at i:22732514 original size:103 final size:99
Alignment explanation
Indices: 22732240--22732508 Score: 450
Period size: 103 Copynumber: 2.7 Consensus size: 99
22732230 TTTTATTTTA
22732240 AATATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAT
1 AATATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAT
*
22732305 ATTTCATTTAATTTGAATCACGAAAAATAATTTC
66 ATTTCATTTAATTTGAATCAAGAAAAATAATTTC
22732339 AATATTTTATTTTTTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT
1 AATATTTTA----TTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT
**
22732404 AAATATTTC-TTTTTTTTGAATCAAGAAAAATAATTTC
62 AAATATTTCATTTAATTTGAATCAAGAAAAATAATTTC
* *
22732441 AATATTTTATTATATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTACTTTAAAT
1 AATATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAT
22732506 ATT
66 ATT
22732509 CTATTTTATT
Statistics
Matches: 161, Mismatches: 5, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
98 57 0.35
99 9 0.06
102 34 0.21
103 61 0.38
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.52
Consensus pattern (99 bp):
AATATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAT
ATTTCATTTAATTTGAATCAAGAAAAATAATTTC
Found at i:22732632 original size:9 final size:9
Alignment explanation
Indices: 22732618--22732661 Score: 65
Period size: 9 Copynumber: 5.1 Consensus size: 9
22732608 CCAGCAACTC
22732618 ACATAATTT
1 ACATAATTT
22732627 ACATAATTT
1 ACATAATTT
22732636 ACATAA--T
1 ACATAATTT
*
22732643 ACATAACTT
1 ACATAATTT
22732652 ACATAATTT
1 ACATAATTT
22732661 A
1 A
22732662 AAGTTTGAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
7 7 0.22
9 25 0.78
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.39
Consensus pattern (9 bp):
ACATAATTT
Found at i:22732647 original size:16 final size:16
Alignment explanation
Indices: 22732626--22732658 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
22732616 TCACATAATT
*
22732626 TACATAATTTACATAA
1 TACATAACTTACATAA
22732642 TACATAACTTACATAA
1 TACATAACTTACATAA
22732658 T
1 T
22732659 TTAAAGTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.36
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:22732703 original size:30 final size:30
Alignment explanation
Indices: 22732644--22732711 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 30
22732634 TTACATAATA
* **
22732644 CATAACTTACATAATTTAAAGTTTGAATTT
1 CATAACTTACATAATTTAAAGATCAAATTT
22732674 CATAACTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAATTTAAAGATCAAATTT
*
22732704 CATTACTT
1 CATAACTT
22732712 TATGTCGTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.41, C:0.13, G:0.04, T:0.41
Consensus pattern (30 bp):
CATAACTTACATAATTTAAAGATCAAATTT
Found at i:22732749 original size:18 final size:18
Alignment explanation
Indices: 22732726--22732760 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
22732716 TCGTACATAA
22732726 TACATAACTTAAATAATT
1 TACATAACTTAAATAATT
*
22732744 TACATAACTTACATAAT
1 TACATAACTTAAATAAT
22732761 ACATAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (18 bp):
TACATAACTTAAATAATT
Found at i:22732750 original size:9 final size:9
Alignment explanation
Indices: 22732726--22732759 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
22732716 TCGTACATAA
22732726 TACATAACT
1 TACATAACT
* *
22732735 TAAATAATT
1 TACATAACT
22732744 TACATAACT
1 TACATAACT
22732753 TACATAA
1 TACATAA
22732760 TACATAAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (9 bp):
TACATAACT
Found at i:22737608 original size:17 final size:15
Alignment explanation
Indices: 22737588--22737625 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
22737578 TTATTTCAAA
22737588 TATTAATAACTTTCTAC
1 TATTAA-AA-TTTCTAC
22737605 TATT-AAATTTCTAC
1 TATTAAAATTTCTAC
22737619 TATTAAA
1 TATTAAA
22737626 TAATATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 11 0.55
15 4 0.20
16 1 0.05
17 4 0.20
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.47
Consensus pattern (15 bp):
TATTAAAATTTCTAC
Found at i:22737617 original size:14 final size:14
Alignment explanation
Indices: 22737598--22737626 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22737588 TATTAATAAC
22737598 TTTCTACTATTAAA
1 TTTCTACTATTAAA
22737612 TTTCTACTATTAAA
1 TTTCTACTATTAAA
22737626 T
1 T
22737627 AATATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTCTACTATTAAA
Found at i:22738268 original size:21 final size:21
Alignment explanation
Indices: 22738244--22738327 Score: 89
Period size: 21 Copynumber: 4.0 Consensus size: 21
22738234 AGGCAGCAAA
*
22738244 GAGGGAGGCAGCGGCAACAGC
1 GAGGGAGGCAGAGGCAACAGC
* * * *
22738265 GAGGGAGGCAGCGGTAGCAGT
1 GAGGGAGGCAGAGGCAACAGC
*
22738286 GAGGGAGGCAGAGGC-ACGACC
1 GAGGGAGGCAGAGGCAAC-AGC
*
22738307 GAGAGAGGCAGAGGCAACAGC
1 GAGGGAGGCAGAGGCAACAGC
22738328 AATGGTAGCA
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
20 1 0.02
21 48 0.94
22 2 0.04
ACGTcount: A:0.30, C:0.20, G:0.48, T:0.02
Consensus pattern (21 bp):
GAGGGAGGCAGAGGCAACAGC
Found at i:22741297 original size:40 final size:40
Alignment explanation
Indices: 22741220--22741477 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
22741210 AAACCAAGTA
* *
22741220 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
22741259 TCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
22741299 CCTTCGGGACTTAGCCCGGATATAGTAACTCGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
22741339 CCTTCGGGACTTAGTCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
22741379 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
22741419 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
22741459 CCTTCAGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
22741478 TTATCATCCG
Statistics
Matches: 197, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.07
40 183 0.93
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:22743534 original size:104 final size:103
Alignment explanation
Indices: 22743371--22744010 Score: 608
Period size: 104 Copynumber: 6.3 Consensus size: 103
22743361 ATAACTTGTA
* * *
22743371 GACCTACGTTCTCAGCTGATGTTTAAAGGTTAGCTGAATTAAGCTC-ACAACCTCTAGTTATTCG
1 GACCTACATTCT-AGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGA-AACCTCTAGTTATTTG
* *
22743435 GGTTAGCTAAGTTAAGCTCGCAACTCCAACACAACTCACG
64 AGTTAGCTAAGTTAAGCTCGCAACTCCAACACAACTCGCG
* * * *
22743475 GACCTACATTCCTAGCTGATGCTTAAAGGTTAACTGAGTTAACCTCGAAACCTCCAGTTATTTGA
1 GACCTACATT-CTAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGAAACCTCTAGTTATTTGA
* * *
22743540 GTTAACTAAGTCAAGCTTGC--CT------C-A-T---G
65 GTTAGCTAAGTTAAGCTCGCAACTCCAACACAACTCGCG
* * * * *
22743566 GACCTACATTCTCAGTTGATGTTTAAAGGTTAGCTCAGTTAAACTCGCAACCTCTAGTTATTTGG
1 GACCTACATTCT-AGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGAAACCTCTAGTTATTTGA
* * * * *
22743631 GTTAACTAAGTTAAGCTGGCAACCCCAACACAACTTGTG
65 GTTAGCTAAGTTAAGCTCGCAACTCCAACACAACTCGCG
* ** * *
22743670 GACCTACATTCCCAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGCGACCTTTAGTTATTTGG
1 GACCTACATT-CTAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGAAACCTCTAGTTATTTGA
* * *
22743735 GTTAGCTGAGTTAAGCTCGCAACCCCTACACAACTCGCG
65 GTTAGCTAAGTTAAGCTCGCAACTCCAACACAACTCGCG
* * *
22743774 GATCTACGTTCCTAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTC-ACAACCTCCAGTTATTTG
1 GACCTACATT-CTAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGA-AACCTCTAGTTATTTG
* * * * **
22743838 AGTTAGCTGAGTTAAACTCGCAACTCCGACACAGCTCGTA
64 AGTTAGCTAAGTTAAGCTCGCAACTCCAACACAACTCGCG
* * * ** * * * *
22743878 GAACTACGTTTCTAGATGACATTTAAAGGTTACCTGAGTTAAGCTTGTAACCTTTAGTTATTTGA
1 GACCTAC-ATTCTAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGAAACCTCTAGTTATTTGA
* * * * *
22743943 GTTAGCTGAGTTAAGGTCACAACTTCAACACAGCTCGCG
65 GTTAGCTAAGTTAAGCTCGCAACTCCAACACAACTCGCG
*
22743982 GACCTACATTCTCAGCTTATGTTTAAAGG
1 GACCTACATTCT-AGCTGATGTTTAAAGG
22744011 ATAACTATGT
Statistics
Matches: 444, Mismatches: 71, Indels: 42
0.80 0.13 0.08
Matches are distributed among these distances:
90 2 0.00
91 73 0.16
93 1 0.00
94 1 0.00
95 1 0.00
96 1 0.00
99 1 0.00
100 1 0.00
101 1 0.00
102 2 0.00
103 4 0.01
104 350 0.79
105 6 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (103 bp):
GACCTACATTCTAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGAAACCTCTAGTTATTTGAG
TTAGCTAAGTTAAGCTCGCAACTCCAACACAACTCGCG
Found at i:22743629 original size:91 final size:91
Alignment explanation
Indices: 22743469--22743647 Score: 252
Period size: 91 Copynumber: 2.0 Consensus size: 91
22743459 TCCAACACAA
* *
22743469 CTCACGGACCTACATTCCTAGCTGATGCTTAAAGGTTAACTGAGTTAACCTCGAAACCTCCAGTT
1 CTCACGGACCTACATTCCTAGCTGATGCTTAAAGGTTAACTCAGTTAAACTCGAAACCTCCAGTT
22743534 ATTTGAGTTAACTAAGTCAAGCTTGC
66 ATTTGAGTTAACTAAGTCAAGCTTGC
* * * * * *
22743560 CTCATGGACCTACATT-CTCAGTTGATGTTTAAAGGTTAGCTCAGTTAAACTCGCAACCTCTAGT
1 CTCACGGACCTACATTCCT-AGCTGATGCTTAAAGGTTAACTCAGTTAAACTCGAAACCTCCAGT
* *
22743624 TATTTGGGTTAACTAAGTTAAGCT
65 TATTTGAGTTAACTAAGTCAAGCT
22743648 GGCAACCCCA
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
90 2 0.03
91 75 0.97
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (91 bp):
CTCACGGACCTACATTCCTAGCTGATGCTTAAAGGTTAACTCAGTTAAACTCGAAACCTCCAGTT
ATTTGAGTTAACTAAGTCAAGCTTGC
Found at i:22750512 original size:15 final size:16
Alignment explanation
Indices: 22750480--22750512 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
22750470 TTTAACAAGT
22750480 TTTACTCCTTTTTCAA
1 TTTACTCCTTTTTCAA
*
22750496 TTTAGTCCTTTTT-AA
1 TTTACTCCTTTTTCAA
22750511 TT
1 TT
22750513 AACTATCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.18, C:0.18, G:0.03, T:0.61
Consensus pattern (16 bp):
TTTACTCCTTTTTCAA
Found at i:22752942 original size:68 final size:68
Alignment explanation
Indices: 22752815--22752947 Score: 169
Period size: 68 Copynumber: 2.0 Consensus size: 68
22752805 AAGTCCTCCA
* * *
22752815 AGACATTAAACATGGGTTCAAAATGTGTAAGACCATAGCTAGGCTATAGCAACTCATGGAGTCTG
1 AGACATTAAACATGGGTTCAAAATATGTAAGACCATAGCTAGACTATAGAAACTCATGGAGTCTG
22752880 TTG
66 TTG
** ** * *
22752883 AGACATTAAACATGGGTTCATGATATGTTTGACCATAGCTCGACTATGGAAACAT-ATGGAGTCT
1 AGACATTAAACATGGGTTCAAAATATGTAAGACCATAGCTAGACTATAGAAAC-TCATGGAGTCT
22752947 G
65 G
22752948 CCAAGATAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
68 54 0.98
69 1 0.02
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (68 bp):
AGACATTAAACATGGGTTCAAAATATGTAAGACCATAGCTAGACTATAGAAACTCATGGAGTCTG
TTG
Found at i:22771701 original size:30 final size:30
Alignment explanation
Indices: 22771667--22771727 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
22771657 GCATAAAAGA
*
22771667 GTAAAAAGAGCAAGAAACGGGCCAAAAACG
1 GTAAAAAGAGCAAGAAACAGGCCAAAAACG
*
22771697 GTAAAAAGAGCAAGAAACAGGCCGAAAACG
1 GTAAAAAGAGCAAGAAACAGGCCAAAAACG
22771727 G
1 G
22771728 AGAAAATGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.52, C:0.16, G:0.28, T:0.03
Consensus pattern (30 bp):
GTAAAAAGAGCAAGAAACAGGCCAAAAACG
Found at i:22774061 original size:22 final size:22
Alignment explanation
Indices: 22774035--22774076 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
22774025 CTTGTGTTAT
22774035 AATTAGAAGCAAATAGGTTTAG
1 AATTAGAAGCAAATAGGTTTAG
*
22774057 AATTAGAAGGAAATAGGTTT
1 AATTAGAAGCAAATAGGTTT
22774077 TCGATGACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.02, G:0.24, T:0.29
Consensus pattern (22 bp):
AATTAGAAGCAAATAGGTTTAG
Found at i:22776116 original size:46 final size:46
Alignment explanation
Indices: 22775970--22776184 Score: 201
Period size: 46 Copynumber: 4.6 Consensus size: 46
22775960 TTTGTGTGTG
22775970 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATGA--T-
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-TTGA-GACGTA
* *
22776016 AGCTAGTGTAAGACAATGTCTCGGACATGGCATCGGCATTGAGACG-A
1 AGCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCTTGAGACGTA
* *
22776063 GAGCTAGTGTAAGACATGTCTGGGACATGTATTGGCCTTGAGACGTA
1 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACGTA
** * *
22776110 AGCTAGTGTAAGACATGTCTACGACATGCATCGG-CTACGAGATG-A
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-TGAGACGTA
* *
22776155 TAGTTAGTGTAAGACCATGTTTGGGACATG
1 -AGCTAGTGTAAGA-CATGTCTGGGACATG
22776185 GAATCTGCAC
Statistics
Matches: 142, Mismatches: 16, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
45 7 0.05
46 76 0.54
47 38 0.27
48 21 0.15
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACGTA
Done.