Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 73 of 325
Found at i:22776345 original size:55 final size:55
Alignment explanation
Indices: 22776284--22776394 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
22776274 ATGAGGAAAG
22776284 TATAACCGTGTTGTAAATAGTACAGGTACCTAATTGGTACGTATGAGATATGAGC
1 TATAACCGTGTTGTAAATAGTACAGGTACCTAATTGGTACGTATGAGATATGAGC
22776339 TATAACCGTGTTGTAAATAGTACAGGTACCTAATTGGTACGTATGAGATATGAGC
1 TATAACCGTGTTGTAAATAGTACAGGTACCTAATTGGTACGTATGAGATATGAGC
22776394 T
1 T
22776395 CTCTATATAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (55 bp):
TATAACCGTGTTGTAAATAGTACAGGTACCTAATTGGTACGTATGAGATATGAGC
Found at i:22778203 original size:53 final size:53
Alignment explanation
Indices: 22778123--22778227 Score: 129
Period size: 53 Copynumber: 2.0 Consensus size: 53
22778113 TTCCTTTTTA
* * * * * *
22778123 AACTTACCATTTCTATGTCTTGACATGGTCTTACGTGGTATCCTTGACTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGACTTATG
* * *
22778176 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGACTTAT
22778228 AGTAGTTTAT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGACTTATG
Found at i:22783475 original size:19 final size:19
Alignment explanation
Indices: 22783448--22783491 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
22783438 AGTTTAATTC
* *
22783448 ATTTGTTTATCCCTTATTT
1 ATTTTTTTATCACTTATTT
* *
22783467 ATTTTTTTATTAGTTATTT
1 ATTTTTTTATCACTTATTT
22783486 ATTTTT
1 ATTTTT
22783492 AATCTTTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.18, C:0.07, G:0.05, T:0.70
Consensus pattern (19 bp):
ATTTTTTTATCACTTATTT
Found at i:22784506 original size:232 final size:232
Alignment explanation
Indices: 22784095--22784562 Score: 774
Period size: 232 Copynumber: 2.0 Consensus size: 232
22784085 AAGACGGATA
* *
22784095 GTCTTGATTATATAATCATTATGCTCTTAGTCAAATTATTTAAGCACGTAGTATCACAAACGCCA
1 GTCTTGATTACATAATCATTATGCTCTTAGTCAAATTATTTAAGCAAGTAGTATCACAAACGCCA
*
22784160 GATTGTGAGTCAATAATAAACACACATATGACCACCTAGTAGATGCATCTATCAAAACCATAACA
66 GATTGTGAGTCAATAATAAACACACATATGACCACCTAGTAGATGCATCTATCAAAACCATAAAA
* * * * *
22784225 TATTTGAATGGTCCACATGGTGGATGAATGATTTCACATATATCACCTTGAATATGTTTCAAAAT
131 TATTTGAATGGTCCACATGGTGGATGAATGACTTCACATATACCACCTTGAATACGTTTAAAAAA
**
22784290 TGTGGGAGATTCAATCCCAAACTTTTTTATAGTGATG
196 TACGGGAGATTCAATCCCAAACTTTTTTATAGTGATG
* *
22784327 GTCTTGATTGCATAATCATTATGCTCTTATTCAAATTATTTAAGCAAGTAGTATCACAAACGCCA
1 GTCTTGATTACATAATCATTATGCTCTTAGTCAAATTATTTAAGCAAGTAGTATCACAAACGCCA
* * *
22784392 GATTGTGAGTTAATAATAAACACACATATGACCACCTAGTAGATGTATCTATCAAACCCATAAAA
66 GATTGTGAGTCAATAATAAACACACATATGACCACCTAGTAGATGCATCTATCAAAACCATAAAA
*
22784457 TTTTTGAATGGTCCACATGGTGGATGAATGACTTCACATATACCACCTTGAATACGTTTAAAAAA
131 TATTTGAATGGTCCACATGGTGGATGAATGACTTCACATATACCACCTTGAATACGTTTAAAAAA
* *
22784522 TACGGGAGATTCAATCCCAAACTTTTTTCTGGTGATG
196 TACGGGAGATTCAATCCCAAACTTTTTTATAGTGATG
22784559 GTCT
1 GTCT
22784563 AATAAAATTT
Statistics
Matches: 218, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
232 218 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (232 bp):
GTCTTGATTACATAATCATTATGCTCTTAGTCAAATTATTTAAGCAAGTAGTATCACAAACGCCA
GATTGTGAGTCAATAATAAACACACATATGACCACCTAGTAGATGCATCTATCAAAACCATAAAA
TATTTGAATGGTCCACATGGTGGATGAATGACTTCACATATACCACCTTGAATACGTTTAAAAAA
TACGGGAGATTCAATCCCAAACTTTTTTATAGTGATG
Found at i:22786567 original size:21 final size:22
Alignment explanation
Indices: 22786541--22786587 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
22786531 CTCTGCTCAA
*
22786541 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
22786562 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
22786584 ACTC
1 ACTC
22786588 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:22794679 original size:21 final size:21
Alignment explanation
Indices: 22794653--22794692 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
22794643 CTGCATTGGG
22794653 TTAGTTTTCTCTTAAACCCAT
1 TTAGTTTTCTCTTAAACCCAT
22794674 TTAGTTTTCTCTTAAACCC
1 TTAGTTTTCTCTTAAACCC
22794693 CAGAGGCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.25, G:0.05, T:0.47
Consensus pattern (21 bp):
TTAGTTTTCTCTTAAACCCAT
Found at i:22809488 original size:54 final size:54
Alignment explanation
Indices: 22809290--22809558 Score: 326
Period size: 54 Copynumber: 5.0 Consensus size: 54
22809280 GAAACCTTTT
* * * * * *
22809290 CCTTTTTGAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTG
1 CCTTATTGAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTG
* * * **
22809344 CCTTA-TAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTG
1 CCTTATTGAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTG
* * *
22809397 CCTTATATTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTG
1 CCTTAT-TGAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTG
** *
22809452 CCTTATTGAACTTATCAATGCCATGCCTTGGTATGGTCTTACATGATTTCCTTG
1 CCTTATTGAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTG
* **
22809506 CCTTATAGAACTTATCAAAACCATGCCTTGACATGGTCTTACATGATATCCTT
1 CCTTATTGAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
22809559 ATCTTACCAA
Statistics
Matches: 187, Mismatches: 24, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
52 2 0.01
53 44 0.24
54 95 0.51
55 44 0.24
56 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.38
Consensus pattern (54 bp):
CCTTATTGAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTG
Found at i:22809518 original size:108 final size:108
Alignment explanation
Indices: 22809283--22809558 Score: 360
Period size: 108 Copynumber: 2.6 Consensus size: 108
22809273 TTACTCGGAA
* * * * * *
22809283 ACCTTTTCCTT-TTTGAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCT
1 ACCTTTGCCTTATATGAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCT
22809347 TATAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGG
66 TATAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGG
* *
22809390 ACCTTTGCCTTATATTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCT
1 ACCTTTGCCTTATATGAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCT
* * * **
22809455 TATTGAACTTATCAATGCCATGCCTTGGTATGGTCTTACATGATT
66 TA-TAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATG-GG
* ** *
22809500 TCC-TTGCCTTATA-GAACTTATCAAAACCATGCCTTGACATGGTCTTACATGATATCCTT
1 ACCTTTGCCTTATATGAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTT
22809559 ATCTTACCAA
Statistics
Matches: 147, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
107 10 0.07
108 89 0.61
109 46 0.31
110 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.38
Consensus pattern (108 bp):
ACCTTTGCCTTATATGAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCT
TATAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGG
Found at i:22810303 original size:30 final size:30
Alignment explanation
Indices: 22810258--22810315 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
22810248 TCGCTAACTC
* *
22810258 AAACTTTTTCAAAATTATAATTTTGCCCAT
1 AAACCTTTGCAAAATTATAATTTTGCCCAT
*
22810288 AAACCTTTGCAAAATTATGATTTTGCCC
1 AAACCTTTGCAAAATTATAATTTTGCCC
22810316 CTAGGCTCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.19, G:0.07, T:0.40
Consensus pattern (30 bp):
AAACCTTTGCAAAATTATAATTTTGCCCAT
Found at i:22816690 original size:20 final size:21
Alignment explanation
Indices: 22816667--22816707 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
22816657 ATACATGATT
* *
22816667 ATTTTG-ATTTTTTATGATAG
1 ATTTTGAATGTTTGATGATAG
22816687 ATTTTGAATGTTTGATGATAG
1 ATTTTGAATGTTTGATGATAG
22816708 TTATACAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.54
Consensus pattern (21 bp):
ATTTTGAATGTTTGATGATAG
Found at i:22821667 original size:5 final size:5
Alignment explanation
Indices: 22821659--22821692 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
22821649 ATGAGATAGT
* *
22821659 TTTTA TTTTA TTTTA TTCTA TTTTA TTTAA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
22821693 GGAAGTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:22821882 original size:14 final size:14
Alignment explanation
Indices: 22821863--22821920 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 14
22821853 AAACATTATA
22821863 TTTTAATTTGATAT
1 TTTTAATTTGATAT
*
22821877 TTTTAATTATTATAATT
1 TTTTAATT-TGAT-A-T
* *
22821894 TTTTAATTTAAAAT
1 TTTTAATTTGATAT
22821908 TTTTAATCTTGAT
1 TTTTAAT-TTGAT
22821921 TAAATGTAGT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
14 16 0.46
15 7 0.20
16 3 0.09
17 9 0.26
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (14 bp):
TTTTAATTTGATAT
Found at i:22831823 original size:20 final size:20
Alignment explanation
Indices: 22831800--22831850 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
22831790 TTTATATTAT
*
22831800 ATATTTATATGTT-ATTTTTA
1 ATATTTATAT-TTAATGTTTA
*
22831820 ATATTTAGATTTAATGTTTA
1 ATATTTATATTTAATGTTTA
22831840 ATA-TTATATTT
1 ATATTTATATTT
22831851 TTGTTTGTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (20 bp):
ATATTTATATTTAATGTTTA
Found at i:22834900 original size:39 final size:39
Alignment explanation
Indices: 22834854--22835029 Score: 280
Period size: 39 Copynumber: 4.5 Consensus size: 39
22834844 CATACTCATT
* * *
22834854 TTTAAGCATATATCATATTACACATATAATCACCTAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
* *
22834893 TTCAAGCATATATCACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
*
22834932 TTTAAGCATATATCACAATATACATATAATCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
* *
22834971 TTTAAGCATATGTCACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
22835010 TTTAAGCATATATCACAATA
1 TTTAAGCATATATCACAATA
22835030 TATGTAACAC
Statistics
Matches: 125, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 125 1.00
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.31
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACACATATAATCACATAACA
Found at i:22835165 original size:16 final size:16
Alignment explanation
Indices: 22835110--22835165 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
22835100 ATTTTAGATA
*
22835110 ATTTATGTTATTTACT
1 ATTTATATTATTTACT
* *
22835126 ATTCATGTTATTTACT
1 ATTTATATTATTTACT
*
22835142 ATTAATATTATTTACT
1 ATTTATATTATTTACT
22835158 ATTTATAT
1 ATTTATAT
22835166 CCAAAAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (16 bp):
ATTTATATTATTTACT
Found at i:22837686 original size:31 final size:31
Alignment explanation
Indices: 22837650--22837726 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
22837640 ATTAATCCCC
* *
22837650 AAAATACATAGATTAAGTTATACCAATCTCA
1 AAAATACAAAAATTAAGTTATACCAATCTCA
*
22837681 AAAATATAAAAATTAAGTTATACCAATCTCA
1 AAAATACAAAAATTAAGTTATACCAATCTCA
*
22837712 AAAATATAAAAATTA
1 AAAATACAAAAATTA
22837727 CTTAAAACGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.56, C:0.12, G:0.04, T:0.29
Consensus pattern (31 bp):
AAAATACAAAAATTAAGTTATACCAATCTCA
Found at i:22837932 original size:30 final size:30
Alignment explanation
Indices: 22837896--22837956 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
22837886 TTAATTTTTC
22837896 CATGGATGATTCATCAAAAATATCAACTAA
1 CATGGATGATTCATCAAAAATATCAACTAA
22837926 CATGGATGATTCATCAAAAATATCAACTAA
1 CATGGATGATTCATCAAAAATATCAACTAA
22837956 C
1 C
22837957 TTTTATTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.46, C:0.18, G:0.10, T:0.26
Consensus pattern (30 bp):
CATGGATGATTCATCAAAAATATCAACTAA
Found at i:22845020 original size:34 final size:34
Alignment explanation
Indices: 22844982--22845049 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
22844972 ATCACATATA
* * **
22844982 TCCATCAAAATTCATCATGCAAATGGAACTTAAC
1 TCCATCAAAATTCACCATCCAAACAGAACTTAAC
**
22845016 TCCATTGAAATTCACCATCCAAACAGAACTTAAC
1 TCCATCAAAATTCACCATCCAAACAGAACTTAAC
22845050 ATTTTCTGGA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.25
Consensus pattern (34 bp):
TCCATCAAAATTCACCATCCAAACAGAACTTAAC
Found at i:22846246 original size:39 final size:40
Alignment explanation
Indices: 22846202--22846471 Score: 345
Period size: 39 Copynumber: 6.9 Consensus size: 40
22846192 TACAATATAC
* * **
22846202 ATAATCACATAATATTTAAACATATATCACAATACT-TGT
1 ATAATCACATAACATTTAAGCATATATCACAATACTACAT
* *
22846241 ATAATCACATAACATTTAAACATATATCATAATA-TACAT
1 ATAATCACATAACATTTAAGCATATATCACAATACTACAT
* * * * **
22846280 ATAATCACATAATATTTAAACATAAATCATAATACT-TGT
1 ATAATCACATAACATTTAAGCATATATCACAATACTACAT
* * *
22846319 ATAACCATATAACATTCAAGCATATATCACAATA-TACAT
1 ATAATCACATAACATTTAAGCATATATCACAATACTACAT
22846358 ATAATCACATAACATTTAAGCATATATCACAATACT-CAT
1 ATAATCACATAACATTTAAGCATATATCACAATACTACAT
*
22846397 ATAATCACAAAACATTTAAGCATATATCACAATA-TACAT
1 ATAATCACATAACATTTAAGCATATATCACAATACTACAT
*
22846436 ATAATCACATAACATTTAAGCATATATCGCAATACT
1 ATAATCACATAACATTTAAGCATATATCACAATACT
22846472 CAAAAACATT
Statistics
Matches: 202, Mismatches: 23, Indels: 11
0.86 0.10 0.05
Matches are distributed among these distances:
38 3 0.01
39 196 0.97
40 3 0.01
ACGTcount: A:0.48, C:0.17, G:0.03, T:0.32
Consensus pattern (40 bp):
ATAATCACATAACATTTAAGCATATATCACAATACTACAT
Found at i:22846322 original size:78 final size:78
Alignment explanation
Indices: 22846193--22846471 Score: 409
Period size: 78 Copynumber: 3.6 Consensus size: 78
22846183 TTGGGTTGTT
*
22846193 ACAATATAC--ATAATCACATAATATTTAAACATATATCACAATACTTGTATAATCACATAACAT
1 ACAATATACATATAATCACATAACATTTAAACATATATCACAATACTTGTATAATCACATAACAT
*
22846256 TTAAACATATATC
66 TTAAGCATATATC
* * * * * *
22846269 ATAATATACATATAATCACATAATATTTAAACATAAATCATAATACTTGTATAACCATATAACAT
1 ACAATATACATATAATCACATAACATTTAAACATATATCACAATACTTGTATAATCACATAACAT
*
22846334 TCAAGCATATATC
66 TTAAGCATATATC
* ** *
22846347 ACAATATACATATAATCACATAACATTTAAGCATATATCACAATACTCATATAATCACAAAACAT
1 ACAATATACATATAATCACATAACATTTAAACATATATCACAATACTTGTATAATCACATAACAT
22846412 TTAAGCATATATC
66 TTAAGCATATATC
* *
22846425 ACAATATACATATAATCACATAACATTTAAGCATATATCGCAATACT
1 ACAATATACATATAATCACATAACATTTAAACATATATCACAATACT
22846472 CAAAAACATT
Statistics
Matches: 182, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
76 8 0.04
78 174 0.96
ACGTcount: A:0.48, C:0.18, G:0.03, T:0.32
Consensus pattern (78 bp):
ACAATATACATATAATCACATAACATTTAAACATATATCACAATACTTGTATAATCACATAACAT
TTAAGCATATATC
Found at i:22849667 original size:101 final size:101
Alignment explanation
Indices: 22849492--22849691 Score: 251
Period size: 101 Copynumber: 2.0 Consensus size: 101
22849482 ACTCTATTCG
*
22849492 ATCATTGGGTGCTTCCCTCAAACCATGTCTAGTGTGGCGGCCTTCGCACCCACAGAACTAGTGGA
1 ATCATTGGGTGCTTCCCTCAAACCATGTCTAGTGTGGCGGCCTTCACACCCACAGAACTAGTGGA
* * *
22849557 TCTTATGTGGCTT-GAGCTGCGGATCTTAAATCCTTA
66 GCTCATGTGG-TTCGAGCTGCGAATCTTAAATCCTTA
* * * * * *
22849593 ATCATTGGGT-CGTTCCCTCGACCCATGTTTGGTGTGGCGGCCTTTACACTCACAGAACTAGTGG
1 ATCATTGGGTGC-TTCCCTCAAACCATGTCTAGTGTGGCGGCCTTCACACCCACAGAACTAGTGG
* * *
22849657 GGCTCATGTGGTTCGAGGTGCGAATCTTAACTCCT
65 AGCTCATGTGGTTCGAGCTGCGAATCTTAAATCCT
22849692 ACAACTAATG
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
100 3 0.04
101 81 0.96
ACGTcount: A:0.19, C:0.26, G:0.26, T:0.30
Consensus pattern (101 bp):
ATCATTGGGTGCTTCCCTCAAACCATGTCTAGTGTGGCGGCCTTCACACCCACAGAACTAGTGGA
GCTCATGTGGTTCGAGCTGCGAATCTTAAATCCTTA
Found at i:22852868 original size:46 final size:44
Alignment explanation
Indices: 22852815--22853030 Score: 193
Period size: 46 Copynumber: 4.7 Consensus size: 44
22852805 ATTGAGGGTT
* *
22852815 AGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GAC-TATGATGAGAGCC
* *
22852861 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGA-GACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GACTATGATGA-G--AGCC
* * *
22852907 AGTGTAAGACATGTCTAGGACATGCATCGACTATGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGACTAT--GATGAGAGCC
* * * * *
22852953 AGTGTAAGACCATGTCTGGGACATGGCATCGACACAAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-TATGATGAGAGCC
22853000 AGTGTAAGACAGTGTCTGGGACATGGCATCG
1 AGTGTAAGACA-TGTCTGGGACAT-GCATCG
22853031 GTACCTTGCC
Statistics
Matches: 143, Mismatches: 16, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 4 0.03
46 76 0.53
47 46 0.32
48 10 0.07
49 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACTATGATGAGAGCC
Found at i:22854267 original size:22 final size:22
Alignment explanation
Indices: 22854182--22854265 Score: 125
Period size: 22 Copynumber: 3.9 Consensus size: 22
22854172 TGTTGATTGG
* *
22854182 TCACACGGGCATGTTGCCATTC
1 TCACACGGGCGTGTTGCCCTTC
* *
22854204 CCACATGGGCGTGTTGCCCTTC
1 TCACACGGGCGTGTTGCCCTTC
22854226 TCACACGGGCGTGTTGCCCTTC
1 TCACACGGGCGTGTTGCCCTTC
22854248 TCACACGGGCGTG-TGCCC
1 TCACACGGGCGTGTTGCCC
22854266 CTGTGCCAAG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
21 5 0.09
22 51 0.91
ACGTcount: A:0.12, C:0.36, G:0.27, T:0.25
Consensus pattern (22 bp):
TCACACGGGCGTGTTGCCCTTC
Found at i:22857194 original size:16 final size:16
Alignment explanation
Indices: 22857175--22857205 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22857165 AATTAATAAC
*
22857175 AAAATAATTTAAAATA
1 AAAATAATTAAAAATA
22857191 AAAATAATTAAAAAT
1 AAAATAATTAAAAAT
22857206 TGACACACTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAATAATTAAAAATA
Found at i:22858016 original size:15 final size:15
Alignment explanation
Indices: 22857996--22858025 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22857986 TTTATCCCAG
22857996 TATTAAACAAGTTAA
1 TATTAAACAAGTTAA
*
22858011 TATTAATCAAGTTAA
1 TATTAAACAAGTTAA
22858026 CAAAAGATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.37
Consensus pattern (15 bp):
TATTAAACAAGTTAA
Found at i:22860592 original size:41 final size:43
Alignment explanation
Indices: 22860536--22860651 Score: 137
Period size: 41 Copynumber: 2.7 Consensus size: 43
22860526 GCTATCTCAC
* * *
22860536 ATCGATGCCACTGTCCCAAACAGGGTCTTACACG-AATCAAAT
1 ATCGATGCCAATGTCCCAAACATGGTCTTACACGTAACCAAAT
* * * *
22860578 A-CGATGCTAATGTCCCAGACATGGTCTTACTCGTAACCACAT
1 ATCGATGCCAATGTCCCAAACATGGTCTTACACGTAACCAAAT
* *
22860620 ATCGATGCCAACGTCCCAAACATGGTATTACA
1 ATCGATGCCAATGTCCCAAACATGGTCTTACA
22860652 TGAGAACACA
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
41 27 0.45
42 8 0.13
43 25 0.42
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.23
Consensus pattern (43 bp):
ATCGATGCCAATGTCCCAAACATGGTCTTACACGTAACCAAAT
Found at i:22860662 original size:43 final size:42
Alignment explanation
Indices: 22860536--22860665 Score: 122
Period size: 43 Copynumber: 3.1 Consensus size: 42
22860526 GCTATCTCAC
* * * *
22860536 ATCGATGCC-ACTGTCCCAAACAGGGTCTTACACGAATCAAAT
1 ATCGATGCCAAC-GTCCCAAACATGGTCTTACATGAAACACAT
* * * *
22860578 A-CGATGCTAATGTCCCAGACATGGTCTTAC-TCGTAACCACAT
1 ATCGATGCCAACGTCCCAAACATGGTCTTACAT-G-AAACACAT
*
22860620 ATCGATGCCAACGTCCCAAACATGGTATTACATGAGAACACAT
1 ATCGATGCCAACGTCCCAAACATGGTCTTACATGA-AACACAT
22860663 ATC
1 ATC
22860666 AGGAACCCTA
Statistics
Matches: 70, Mismatches: 12, Indels: 11
0.75 0.13 0.12
Matches are distributed among these distances:
41 24 0.34
42 10 0.14
43 35 0.50
44 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (42 bp):
ATCGATGCCAACGTCCCAAACATGGTCTTACATGAAACACAT
Found at i:22861568 original size:25 final size:26
Alignment explanation
Indices: 22861540--22861594 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
22861530 TTAATTTATG
22861540 TTATATT-ATAACATATATTAACAT-A
1 TTATATTAATAACATAT-TTAACATCA
* *
22861565 TTAT-TTAATTACATATTTAACCTCA
1 TTATATTAATAACATATTTAACATCA
22861590 TTATA
1 TTATA
22861595 AAATATGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (26 bp):
TTATATTAATAACATATTTAACATCA
Found at i:22871821 original size:14 final size:13
Alignment explanation
Indices: 22871802--22871853 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 13
22871792 TTTAATTAGC
22871802 TTAATTAACTTTAA
1 TTAATTAA-TTTAA
22871816 TTAATTAATTTAA
1 TTAATTAATTTAA
*
22871829 TCCTTAATTAATTTACT
1 ---TTAATTAATTTA-A
22871846 TTAATTAA
1 TTAATTAA
22871854 AACTAGCCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
13 5 0.15
14 16 0.48
16 12 0.36
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
TTAATTAATTTAA
Found at i:22873735 original size:40 final size:39
Alignment explanation
Indices: 22873609--22873741 Score: 108
Period size: 40 Copynumber: 3.3 Consensus size: 39
22873599 TATAATCTCA
* * * *
22873609 CACACTAAGTGCCTTT-CATAGCCGAAGCTATCTCAGTCTCA
1 CACACTAAGTG-CTTTATATAACCGAAGCTATCTCA-TAT-G
* ** * *
22873650 CACACTAAGTCCCATATATAACCAAAGCTAT-TCCAATTTG
1 CACACTAAGTGCTTTATATAACCGAAGCTATCT-C-ATATG
*
22873690 TACACTAAGTGCTTTATATAACCGAAGCTATCTCGATATG
1 CACACTAAGTGCTTTATATAACCGAAGCTATCTC-ATATG
22873730 CACACTAAGTGC
1 CACACTAAGTGC
22873742 CGAACATAAT
Statistics
Matches: 72, Mismatches: 16, Indels: 9
0.74 0.16 0.09
Matches are distributed among these distances:
40 45 0.62
41 26 0.36
42 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (39 bp):
CACACTAAGTGCTTTATATAACCGAAGCTATCTCATATG
Found at i:22882847 original size:45 final size:45
Alignment explanation
Indices: 22882746--22882919 Score: 187
Period size: 45 Copynumber: 3.9 Consensus size: 45
22882736 CGAATTCTTC
* * * * *
22882746 CACCGGCATT-TCGCTTGCTAGGCTCGAA-GCC-CAATA-TCATTT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGT-ATCT
* *
22882788 CACCGGCATGATAGCCTGCTAGGCTCGAAGG-CTCGAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCT-GAATAGTATCT
* *
22882833 CACCGGCATTATAGCCTGCTAGGCTCAAAAGTCTGAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTATCT
* * *
22882878 CACTGGCATCATAACCTGCTAGGCTCAAAGGCCTGAATAGTA
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTA
22882920 CCGTATGATA
Statistics
Matches: 113, Mismatches: 13, Indels: 9
0.84 0.10 0.07
Matches are distributed among these distances:
42 9 0.08
43 17 0.15
44 1 0.01
45 83 0.73
46 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (45 bp):
CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTATCT
Found at i:22887386 original size:40 final size:40
Alignment explanation
Indices: 22887323--22887500 Score: 270
Period size: 40 Copynumber: 4.5 Consensus size: 40
22887313 AAGCCAAGTA
* * * * *
22887323 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
22887362 CCTTCGGGACATAGCTCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22887402 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22887442 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22887482 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
22887501 TTATCATCCA
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 12 0.09
40 116 0.91
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:22895615 original size:40 final size:40
Alignment explanation
Indices: 22895552--22895729 Score: 270
Period size: 40 Copynumber: 4.5 Consensus size: 40
22895542 AAGCCAAGTA
* * * * *
22895552 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
22895591 CCTTCGGGACATAGCTCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22895631 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22895671 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22895711 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
22895730 CTATCATCCA
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 12 0.09
40 116 0.91
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:22899532 original size:47 final size:47
Alignment explanation
Indices: 22899479--22899773 Score: 475
Period size: 47 Copynumber: 6.3 Consensus size: 47
22899469 ACAAGATATG
* *
22899479 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
22899526 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
22899573 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
22899620 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
22899667 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGT-AAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-GTGTA
*
22899714 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
22899761 TAAATGTGATAAG
1 TATATGTGATAAG
22899774 TCTCGAAGGG
Statistics
Matches: 230, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
46 3 0.01
47 224 0.97
48 3 0.01
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:22907818 original size:46 final size:46
Alignment explanation
Indices: 22907765--22907855 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
22907755 TATATATACA
* **
22907765 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCAGCTTTACCACATATC
* * * **
22907811 CATCTCATGCACGTTTCGTATTAGCCATTCAGCTTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCAGCTTTACCACATAT
22907856 ATACACTTTC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.26, C:0.30, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCAGCTTTACCACATATC
Found at i:22907898 original size:22 final size:22
Alignment explanation
Indices: 22907872--22907947 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
22907862 TTTCACGTTC
22907872 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
22907894 ATCACATATATG-CATGT-T-CACATT
1 ATCACAT-T-GGCCAT-TCTGC-C-TT
*
22907918 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
22907941 ATCACAT
1 ATCACAT
22907948 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:22907901 original size:47 final size:47
Alignment explanation
Indices: 22907834--22908113 Score: 436
Period size: 47 Copynumber: 6.0 Consensus size: 47
22907824 TTTCGTATTA
* * * * *
22907834 GCCATTCAGCTTTACCACATATATACACT-TTCACGTTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCACATTG
*
22907881 GCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
22907928 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
22907975 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
22908022 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * **
22908069 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
22908114 AAAATCCTAA
Statistics
Matches: 220, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 219 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:22908017 original size:25 final size:25
Alignment explanation
Indices: 22907988--22908065 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
22907978 ATTCGGCCTT
22907988 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
22908013 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
22908035 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
22908060 ATCACA
1 ATCACA
22908066 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:22908040 original size:22 final size:22
Alignment explanation
Indices: 22907919--22908040 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
22907909 GTTCACATTC
22907919 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
22907941 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
22907965 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* *
22907988 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
22908012 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
22908035 ATCACA
1 ATCACA
22908041 CATATGCATG
Statistics
Matches: 74, Mismatches: 10, Indels: 32
0.64 0.09 0.28
Matches are distributed among these distances:
22 22 0.30
23 18 0.24
24 18 0.24
25 16 0.22
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:22914050 original size:48 final size:48
Alignment explanation
Indices: 22913936--22914362 Score: 407
Period size: 48 Copynumber: 8.9 Consensus size: 48
22913926 GGCATTGACG
* * * *
22913936 TTGATATGTGTGTTAGTGTAAGACCATGTCTGGTACACGGCATTGGCCA
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CA
* * * *
22913985 -T-ATTATGAGAGCCAGTGTAAGACCATGTCTGGCACATGGCATCGGCA
1 TTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* ** *
22914032 TTGATATGTGTGATAGTGTAAGACTTTGTCTGGGACATGGCATCGGCG
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * ** *
22914080 TTGATATGTGTGCTAGAGTAAGACAATGTCTGGGACATGGCATTAGCG
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* *
22914128 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGATATGGCATCAGCA
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * * * *
22914176 TTGATATGTGTGCTAGAGAAAGACCATGTTTGGAACATGGCATCGACCA
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCG-GCA
* * * * * *
22914225 --CACTATGAGAGCTAGTGTAAGACCATGTCTAGGACATGACATCGGTGA
1 TTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CA
* * * *
22914273 -TGATATGTGTGCTAGAGTAAGACCATGTTTGGGACATGGCATCAGCC
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * * * * *
22914320 TCGATATGTGAGCCAGTGGAAGACCATGTC-CGGATATGGCATC
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATC
22914363 AACATTTTAC
Statistics
Matches: 308, Mismatches: 62, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
47 15 0.05
48 289 0.94
49 4 0.01
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (48 bp):
TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
Found at i:22914183 original size:144 final size:144
Alignment explanation
Indices: 22913923--22914329 Score: 458
Period size: 144 Copynumber: 2.8 Consensus size: 144
22913913 GTATCCATGC
* * * * *
22913923 CATGGCATTGACGTTGATATGTGTGTTAGTGTAAGACCATGTCTGGTACACGGCATTGGCCAT-A
1 CATGGCATCGACGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGA
* * * * * * *
22913987 TTATGAGAGCCAGTGTAAGACCATGTCTGGCACATGGCATCGGCATTGATATGTGTGATAGTGTA
66 -TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGTGATAGAGAA
** *
22914052 AGACTTTGTCTGGGA
130 AGACCATGTCTGGAA
* * * * *
22914067 CATGGCATCGGCGTTGATATGTGTGCTAGAGTAAGACAATGTCTGGGACATGGCATTAGCGTTGA
1 CATGGCATCGACGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGA
* *
22914132 TATGTGTGCTAGTGTAAGACCATGTCTGGGATATGGCATCAGCATTGATATGTGTGCTAGAGAAA
66 TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGTGATAGAGAAA
*
22914197 GACCATGTTTGGAA
131 GACCATGTCTGGAA
*** * * * * * *
22914211 CATGGCATCGAC-CACACTATGAGAGCTAGTGTAAGACCATGTCTAGGACATGACATCGGTGATG
1 CATGGCATCGACGTTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCGATG
* * * *
22914275 ATATGTGTGCTAGAGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATATGTG
65 ATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTG
22914330 AGCCAGTGGA
Statistics
Matches: 219, Mismatches: 42, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
143 1 0.00
144 217 0.99
145 1 0.00
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (144 bp):
CATGGCATCGACGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGA
TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGTGATAGAGAAA
GACCATGTCTGGAA
Found at i:22916380 original size:93 final size:93
Alignment explanation
Indices: 22916221--22916484 Score: 456
Period size: 93 Copynumber: 2.8 Consensus size: 93
22916211 CCCATAAGTG
* * * * * *
22916221 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCAGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
22916286 GAGTTCGGATGCCTAGTTACATCTCACA
66 GAGTTCGGATGCCTAGTTACATCTCACA
*
22916314 AACTCGGACTCAACTCAACAAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
22916379 GAGTTCGGATGCCTAGTTACATCTCACG
66 GAGTTCGGATGCCTAGTTACATCTCACA
22916407 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
22916472 GAGTTCGGATGCC
66 GAGTTCGGATGCC
22916485 CAAATATCCC
Statistics
Matches: 162, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 162 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACA
Found at i:22916480 original size:46 final size:46
Alignment explanation
Indices: 22916212--22916480 Score: 282
Period size: 46 Copynumber: 5.8 Consensus size: 46
22916202 TGTAACCCGC
* * * *
22916212 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
22916258 CCATGAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
22916308 CTCA-CA---AACTCGGACTCAACTCAACAAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
22916351 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
22916401 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
22916444 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
22916481 TGCCCAAATA
Statistics
Matches: 184, Mismatches: 23, Indels: 32
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.01
43 14 0.08
44 3 0.02
45 2 0.01
46 89 0.48
47 55 0.30
48 2 0.01
49 3 0.02
50 12 0.07
51 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:22921227 original size:53 final size:53
Alignment explanation
Indices: 22921159--22921263 Score: 147
Period size: 53 Copynumber: 2.0 Consensus size: 53
22921149 TTCCTTTTTA
* * ** *
22921159 AACTTACCATTGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* *
22921212 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTAT
22921264 CATAGTTTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:22927707 original size:48 final size:48
Alignment explanation
Indices: 22927634--22927734 Score: 184
Period size: 48 Copynumber: 2.1 Consensus size: 48
22927624 ATGTTTTATG
22927634 ACATGATGATCATTTAGTTACCTACGGCAACATCAAATTTCCACTCTA
1 ACATGATGATCATTTAGTTACCTACGGCAACATCAAATTTCCACTCTA
* *
22927682 ACATGATGATCATTTATTTATCTACGGCAACATCAAATTTCCACTCTA
1 ACATGATGATCATTTAGTTACCTACGGCAACATCAAATTTCCACTCTA
22927730 ACATG
1 ACATG
22927735 TACTTATGAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.33
Consensus pattern (48 bp):
ACATGATGATCATTTAGTTACCTACGGCAACATCAAATTTCCACTCTA
Found at i:22938052 original size:26 final size:26
Alignment explanation
Indices: 22938037--22938088 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
22938027 ATGATTGTTT
22938037 TAATGATTTTTATGTTGGATTGCATA
1 TAATGATTTTTATGTTGGATTGCATA
22938063 TAATGATTTTTATGTTGGATTGCATA
1 TAATGATTTTTATGTTGGATTGCATA
22938089 ATCATGTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.04, G:0.19, T:0.50
Consensus pattern (26 bp):
TAATGATTTTTATGTTGGATTGCATA
Found at i:22939541 original size:39 final size:39
Alignment explanation
Indices: 22939498--22939611 Score: 149
Period size: 39 Copynumber: 2.9 Consensus size: 39
22939488 CCGGACATAT
22939498 TTCCAGCACGTAGCCTGCGGACCTTAAGTCTGGATATAA
1 TTCCAGCACGTAGCCTGCGGACCTTAAGTCTGGATATAA
* * * * *
22939537 TTCCAACTCATAGCCTGCAGACCCTAAGT-TCGGATATAA
1 TTCCAGCACGTAGCCTGCGGACCTTAAGTCT-GGATATAA
* *
22939576 TACCAGCACGTAGCCTGCGGACCTTAAGTCCGGATA
1 TTCCAGCACGTAGCCTGCGGACCTTAAGTCTGGATA
22939612 CACATCAAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
38 1 0.02
39 60 0.98
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TTCCAGCACGTAGCCTGCGGACCTTAAGTCTGGATATAA
Found at i:22945569 original size:48 final size:48
Alignment explanation
Indices: 22945498--22946361 Score: 865
Period size: 48 Copynumber: 18.2 Consensus size: 48
22945488 GTATCCATGC
* *
22945498 CATGGAATCGACGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
*
22945546 CATGGCATCGGTGTTGATATGTGTGCTA-TAGTAAGACCATGTCTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGT-GTAAGACCATGTCTGGGA
* * * *
22945594 CATGGCATCAGTGTTGATATGTTTGCTACTGTAAGACCATGTCTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
* * *
22945642 CATGACATCGGCATTGATATGTGTGCTAGAGTAAGA-C----C---GA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
*** * *
22945682 CATGGCATCGGC-CACATTATGAGAGCTAGTGTAAGACCATGTCTGGGA
1 CATGGCATCGGCGTTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGA
* * * *
22945730 CATGGCATCAGCATTGATATGTGTGATAGTGTAAGACCATGTCTCGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
*** ** * * * **
22945778 CATGGCATCGGC-CACATTATAAGAGCCAATGTAAGACCATGTCTGCAA
1 CATGGCATCGGCGTTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGA
* * * * *
22945826 CATGACATTGGTGTTGATATGTGTGCTAGAGTAAGACCATGTCTAGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
**
22945874 CATGGCATCGGTATTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
* * *
22945922 CATGGCATTGACGTTGATATGTGTGCTAGAGTAAGACCATGTCTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
*** * * * *
22945970 CATGGCATCGGC-CACATTATGAGAGCCAGTGTAAGACCATGTTTGGGA
1 CATGGCATCGGCGTTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGA
* * **
22946018 CATGGCATCGGCATTGATATGTGTGCTAGAGTAAGACCATGTCTAAGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
*** * * *
22946066 CATGGCATCGGC-CACATTATGAGAGCCAGTGTAAGACCATGTCTGGGA
1 CATGGCATCGGCGTTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGA
* ** * *
22946114 CATGGTATCGTTGTTGATATGTGTGCTAGAGTAAGACCATGTTTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
* * *** * * * *
22946162 TATGGCATCAGC-CACATTATGAGAGCCAGTGTAAGACCATGTCTAGGA
1 CATGGCATCGGCGTTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGA
* *
22946210 CATGGCATCGGCATTGATATGTGTGCTAGAGTAAGACCATGTCTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
* *
22946258 CATGGCATCGGCGTTGATATGTGTGCTAGAGTAAGACCATATCTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
* * * * *
22946306 CATGGCATCGGCCTTGATATGTGAGCCAATGTAAGACCTTGTCTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
22946354 CATGGCAT
1 CATGGCAT
22946362 TGACATTTTA
Statistics
Matches: 658, Mismatches: 138, Indels: 40
0.79 0.17 0.05
Matches are distributed among these distances:
39 1 0.00
40 29 0.04
41 1 0.00
43 1 0.00
45 1 0.00
47 6 0.01
48 613 0.93
49 6 0.01
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
Found at i:22945958 original size:192 final size:193
Alignment explanation
Indices: 22945511--22946361 Score: 1047
Period size: 192 Copynumber: 4.5 Consensus size: 193
22945501 GGAATCGACG
** *
22945511 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGTGCTATA
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCTAGA
** * * * *
22945576 GTAAGACCATGTCTGGGACATGGCATCAG---TGTTGATATGTTTGCTACTGTAAGACCATGTCT
66 GTAAGACCATGTCTGGGACATGGCATCAGCCACATT-ATAAG--AGCCAGTGTAAGACCATGTCT
22945638 GGGACATGACATCGGCATTGATATGTGTGCTAGAGTAAGA-C----C---GACATGGCATCGGCC
128 GGGACATGACATCGGCATTGATATGTGTGCTAGAGTAAGACCATGTCTAGGACATGGCATCGGCC
22945695 A
193 A
* * * * *
22945696 --CATTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-AGCATTGATATGTGTGATA
1 TTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CGTTGATATGTGTGCTA
* * * *
22945758 GTGTAAGACCATGTCTCGGACATGGCATCGGCCACATTATAAGAGCCAATGTAAGACCATGTCTG
64 GAGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATAAGAGCCAGTGTAAGACCATGTCTG
** * ** *
22945823 CAACATGACATTGGTGTTGATATGTGTGCTAGAGTAAGACCATGTCTAGGACATGGCATCGG-TA
129 GGACATGACATCGGCATTGATATGTGTGCTAGAGTAAGACCATGTCTAGGACATGGCATCGGCCA
*
22945887 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATTGACGTTGATATGTGTGCTAGA
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCTAGA
* * *
22945952 GTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTTTGGG
66 GTAAGACCATGTCTGGGACATGGCATCAGCCACATTATAAGAGCCAGTGTAAGACCATGTCTGGG
* *
22946017 ACATGGCATCGGCATTGATATGTGTGCTAGAGTAAGACCATGTCTAAGACATGGCATCGGCCA
131 ACATGACATCGGCATTGATATGTGTGCTAGAGTAAGACCATGTCTAGGACATGGCATCGGCCA
* * * * * **
22946080 --CATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGTATCGTTGTTGATATGTGTGCTAG
1 TTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCTAG
* * * *
22946143 AGTAAGACCATGTTTGGGATATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTAG
65 AGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATAAGAGCCAGTGTAAGACCATGTCTGG
* * *
22946208 GACATGGCATCGGCATTGATATGTGTGCTAGAGTAAGACCATGTCTGGGACATGGCATCGG-CG
130 GACATGACATCGGCATTGATATGTGTGCTAGAGTAAGACCATGTCTAGGACATGGCATCGGCCA
* * * * * *
22946271 TTGATATGTGTGCTAGAGTAAGACCATATCTGGGACATGGCATCGGCCTTGATATGTGAGCCA-A
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCTAGA
*
22946335 TGTAAGACCTTGTCTGGGACATGGCAT
66 -GTAAGACCATGTCTGGGACATGGCAT
22946362 TGACATTTTA
Statistics
Matches: 572, Mismatches: 73, Indels: 35
0.84 0.11 0.05
Matches are distributed among these distances:
183 1 0.00
184 132 0.23
185 1 0.00
186 4 0.01
187 2 0.00
189 1 0.00
191 4 0.01
192 423 0.74
193 4 0.01
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (193 bp):
TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCTAGA
GTAAGACCATGTCTGGGACATGGCATCAGCCACATTATAAGAGCCAGTGTAAGACCATGTCTGGG
ACATGACATCGGCATTGATATGTGTGCTAGAGTAAGACCATGTCTAGGACATGGCATCGGCCA
Found at i:22949885 original size:15 final size:15
Alignment explanation
Indices: 22949865--22949923 Score: 55
Period size: 15 Copynumber: 3.6 Consensus size: 15
22949855 TGCTTTTCAC
22949865 AACATGTATTCATTT
1 AACATGTATTCATTT
* *
22949880 AACATGTATAGACTTTTT
1 AACATGTAT--TC-ATTT
22949898 AAAACATGTATTCATTT
1 --AACATGTATTCATTT
22949915 AACATGTAT
1 AACATGTAT
22949924 AAACCATCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
15 18 0.51
17 4 0.11
18 4 0.11
20 9 0.26
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.42
Consensus pattern (15 bp):
AACATGTATTCATTT
Found at i:22956459 original size:19 final size:21
Alignment explanation
Indices: 22956410--22956463 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
22956400 ATTACCAAAA
*
22956410 AAAAAATCAAAATAATTTTTT
1 AAAAAATCAAAATAATATTTT
22956431 AAAAAATCAAAATAA-ATTTT
1 AAAAAATCAAAATAATATTTT
*
22956451 -AAAATTCAAAATA
1 AAAAAATCAAAATA
22956464 TTCATAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 12 0.39
20 4 0.13
21 15 0.48
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAAAATCAAAATAATATTTT
Found at i:22960150 original size:33 final size:33
Alignment explanation
Indices: 22960112--22960188 Score: 154
Period size: 33 Copynumber: 2.3 Consensus size: 33
22960102 TCTCCACATT
22960112 CCATTTCCCTTTTCCTTCTCCTTGCGTAGCCGC
1 CCATTTCCCTTTTCCTTCTCCTTGCGTAGCCGC
22960145 CCATTTCCCTTTTCCTTCTCCTTGCGTAGCCGC
1 CCATTTCCCTTTTCCTTCTCCTTGCGTAGCCGC
22960178 CCATTTCCCTT
1 CCATTTCCCTT
22960189 CCATCATTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.06, C:0.43, G:0.10, T:0.40
Consensus pattern (33 bp):
CCATTTCCCTTTTCCTTCTCCTTGCGTAGCCGC
Found at i:22975460 original size:43 final size:43
Alignment explanation
Indices: 22975424--22975548 Score: 130
Period size: 43 Copynumber: 2.9 Consensus size: 43
22975414 CTTACATGTT
*
22975424 ATCAAATATCGA-TGCCACTATCCCAGACAGGGTCTTACACGAA
1 ATCAAATATC-ATTGCCAATATCCCAGACAGGGTCTTACACGAA
* *
22975467 ATCAAATATCATTGCCAATGTCCCAGACATGGTCTTACAC-ATA
1 ATCAAATATCATTGCCAATATCCCAGACAGGGTCTTACACGA-A
* * * * *
22975510 ATCTCAATA-CAATGCCAATGTCCCAGACATGGTATTACA
1 ATC-AAATATCATTGCCAATATCCCAGACAGGGTCTTACA
22975549 TGTAATTACA
Statistics
Matches: 73, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
42 2 0.03
43 67 0.92
44 4 0.05
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (43 bp):
ATCAAATATCATTGCCAATATCCCAGACAGGGTCTTACACGAA
Found at i:22983798 original size:15 final size:16
Alignment explanation
Indices: 22983774--22983806 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
22983764 ACTGTCTTAC
*
22983774 TTTTCATTTTTTTTGT
1 TTTTCATTTTTGTTGT
22983790 TTTTC-TTTTTGTTGT
1 TTTTCATTTTTGTTGT
22983805 TT
1 TT
22983807 GATTTGTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.03, C:0.06, G:0.09, T:0.82
Consensus pattern (16 bp):
TTTTCATTTTTGTTGT
Found at i:23000779 original size:34 final size:34
Alignment explanation
Indices: 23000736--23000804 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
23000726 GAGTCGTCAC
23000736 TTAGAAGAGCATACCCCTACCATATTTACATTAT
1 TTAGAAGAGCATACCCCTACCATATTTACATTAT
23000770 TTAGAAGAGCATACCCCTACCATATTTACATTAT
1 TTAGAAGAGCATACCCCTACCATATTTACATTAT
23000804 T
1 T
23000805 AAACTAGTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (34 bp):
TTAGAAGAGCATACCCCTACCATATTTACATTAT
Found at i:23002078 original size:61 final size:57
Alignment explanation
Indices: 23002005--23002159 Score: 172
Period size: 61 Copynumber: 2.6 Consensus size: 57
23001995 TAAGTAGATG
* *
23002005 ATTATTATTAAATATAATTTAATAAAAATAAAAATGAATAATTTAATTATATT-TTAACATA
1 ATTATTATTAAATATAATTTAATAAAAAT-AAAAT--ATAATTTAATAACATTCTT-A-ATA
* *
23002066 ATTATTATTAAATAAAATTTAAT-AAAATAATATATAATTTAATAACATTCTTAATA
1 ATTATTATTAAATATAATTTAATAAAAATAAAATATAATTTAATAACATTCTTAATA
* *
23002122 A-TATTATTAAAATATAAATTAATAAAAATCATAATATA
1 ATTATTATT-AAATATAATTTAATAAAAAT-AAAATATA
23002160 TAATATTATA
Statistics
Matches: 82, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
55 7 0.09
56 16 0.20
57 20 0.24
58 8 0.10
59 4 0.05
60 5 0.06
61 22 0.27
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (57 bp):
ATTATTATTAAATATAATTTAATAAAAATAAAATATAATTTAATAACATTCTTAATA
Found at i:23002160 original size:24 final size:23
Alignment explanation
Indices: 23002133--23002182 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
23002123 TATTATTAAA
*
23002133 ATATAA-ATTAATAAAAATCATAAT
1 ATATAATATT-ATAAAAATAAT-AT
23002157 ATATAATATTATAAAAATAATAT
1 ATATAATATTATAAAAATAATAT
23002180 ATA
1 ATA
23002183 ACCTACTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 5 0.21
24 16 0.67
25 3 0.12
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (23 bp):
ATATAATATTATAAAAATAATAT
Found at i:23003606 original size:37 final size:37
Alignment explanation
Indices: 23003547--23003655 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
23003537 AGCTCAGACG
* *
23003547 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
23003584 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
23003621 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
23003656 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:23003939 original size:47 final size:47
Alignment explanation
Indices: 23003860--23004051 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
23003850 TATATATATT
* * * *
23003860 TCACATTGACCATTCGGCTTTA-C-CACATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
23003905 CCATATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
*
23003952 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
23003999 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
23004046 TCACAT
1 TCACAT
23004052 AAAATCCTAA
Statistics
Matches: 135, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 18 0.13
46 1 0.01
47 116 0.86
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:23003978 original size:22 final size:22
Alignment explanation
Indices: 23003951--23004026 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
23003941 GCTCACATTC
23003951 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
23003973 ATCACATATATG-CATGCTC-ACATT
1 ATCACAT-T-GGCCAT--TCGGCCTT
23003997 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
23004020 ATCACAT
1 ATCACAT
23004027 ATATGCATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:23008814 original size:49 final size:49
Alignment explanation
Indices: 23008691--23008878 Score: 241
Period size: 49 Copynumber: 3.8 Consensus size: 49
23008681 TGAGGTCGCA
* * *
23008691 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAA-T-TGGTCACG
* *
23008742 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACAGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAATTGGTCACG
* *** * *
23008791 TGTGTAGTACTAAGTGCAAGCTACTACATGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAATTGGTCACG
* *
23008840 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATA
23008879 GCTTTGGCTA
Statistics
Matches: 120, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
49 83 0.69
50 1 0.01
51 36 0.30
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAATTGGTCACG
Found at i:23018574 original size:18 final size:19
Alignment explanation
Indices: 23018551--23018587 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
23018541 TTTCTTAAGT
*
23018551 AATAAAAATAATA-ATTAA
1 AATAAAAAGAATATATTAA
23018569 AATAAAAAGAATATATTAA
1 AATAAAAAGAATATATTAA
23018588 GTAAAAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (19 bp):
AATAAAAAGAATATATTAA
Found at i:23020972 original size:21 final size:20
Alignment explanation
Indices: 23020940--23020981 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
23020930 CTAAACCGAT
*
23020940 AACTTATGAAATCTTTAGAAA
1 AACTTATGAAAT-TTTACAAA
23020961 AACTTA-GAAAATTTTACAAA
1 AACTTATG-AAATTTTACAAA
23020981 A
1 A
23020982 TACAGGGGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.52, C:0.10, G:0.07, T:0.31
Consensus pattern (20 bp):
AACTTATGAAATTTTACAAA
Found at i:23021540 original size:22 final size:23
Alignment explanation
Indices: 23021515--23021557 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
23021505 ACAAAATAGA
23021515 ACATTC-CATTT-ATACCAAATTC
1 ACATTCACATTTCA-ACCAAATTC
23021537 ACATTCACATTTCAACCAAAT
1 ACATTCACATTTCAACCAAAT
23021558 GGACACTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.32
23 12 0.63
24 1 0.05
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.33
Consensus pattern (23 bp):
ACATTCACATTTCAACCAAATTC
Found at i:23023387 original size:13 final size:13
Alignment explanation
Indices: 23023369--23023395 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
23023359 CTAACATACT
23023369 AATGGTCTGATTA
1 AATGGTCTGATTA
23023382 AATGGTCTGATTA
1 AATGGTCTGATTA
23023395 A
1 A
23023396 CACATAAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (13 bp):
AATGGTCTGATTA
Found at i:23025641 original size:28 final size:28
Alignment explanation
Indices: 23025543--23025670 Score: 159
Period size: 28 Copynumber: 4.5 Consensus size: 28
23025533 ATAGTAAGTC
* *
23025543 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
23025571 CGCACACTTAGTGCT-TACATAATCAAACT
1 CGCACACTTAGTGCTATAC--AATCAAACT
23025600 CGCACACTTAGTGCTATACAATCAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
* * * *
23025628 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATACAA-TCAAACT
*
23025657 CGTACACTTAGTGC
1 CGCACACTTAGTGC
23025671 CAATCTCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
27 2 0.02
28 42 0.48
29 41 0.47
30 3 0.03
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:23025664 original size:57 final size:57
Alignment explanation
Indices: 23025542--23025670 Score: 170
Period size: 57 Copynumber: 2.3 Consensus size: 57
23025532 TATAGTAAGT
* *
23025542 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAACTCGCACACTTAGTGCTTACATAATCAAAC
* * * * *
23025599 TCGCACACTTAGTGCTATACAATCAAACTTGCACACTTAGTGCTATGCA-ATTTAAAC
1 CCGCACACTTAGTGCTATACAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
*
23025656 CCGTACACTTAGTGC
1 CCGCACACTTAGTGC
23025671 CAATCTCATG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
57 59 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATACAATCAAACTCGCACACTTAGTGCTTACATAATCAAAC
Found at i:23030307 original size:28 final size:28
Alignment explanation
Indices: 23030209--23030315 Score: 153
Period size: 28 Copynumber: 3.8 Consensus size: 28
23030199 ATAGTAAGTC
* *
23030209 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
23030237 CGCACACTTAGTGCT-TACATAATCAAACT
1 CGCACACTTAGTGCTATAC--AATCAAACT
23030266 CGCACACTTAGTGCTATACAATCAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
* *
23030294 TGCACACTTAGTGCTATGCAAT
1 CGCACACTTAGTGCTATACAAT
23030316 TTAACCCCCG
Statistics
Matches: 72, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
27 2 0.03
28 43 0.60
29 24 0.33
30 3 0.04
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:23032872 original size:78 final size:79
Alignment explanation
Indices: 23032762--23032940 Score: 193
Period size: 78 Copynumber: 2.3 Consensus size: 79
23032752 AACCCAAGTT
* * * * * * *
23032762 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATATAAACACAAGCACAAATGCCTTCGGGACTTAACCCGGATAAAAG
* *
23032825 CAACTCGC-AAATGC
66 C-ACTAGCAAAAAGC
* * * * *
23032839 CTTCGGGTCTTAGCCCGGATATAAACGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATAAAAT
1 CTTCGGGACTTAGCCCGGATATAAACACAAGCACAAATGCCTTCGGGACTTAACCCGGATAAAAG
23032904 CACTAGCATAAAAGC
66 CACTAGCA-AAAAGC
23032919 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
23032941 CATTCAAATG
Statistics
Matches: 83, Mismatches: 15, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
77 10 0.12
78 44 0.53
79 3 0.04
80 26 0.31
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAAACACAAGCACAAATGCCTTCGGGACTTAACCCGGATAAAAG
CACTAGCAAAAAGC
Found at i:23032891 original size:40 final size:41
Alignment explanation
Indices: 23032832--23032940 Score: 168
Period size: 40 Copynumber: 2.7 Consensus size: 41
23032822 TAGCAACTCG
* *
23032832 CAAATGCCTTCGGGTCTTAGCCCGGATATAAA-CGCTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAAATCACTAGCA
23032872 CAAATGCCTTCGGGACTTAGCCCGGATA-AAATCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAAATCACTAGCA
* *
23032912 TAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGACTTAGCCCGGATAT
23032941 CATTCAAATG
Statistics
Matches: 63, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
39 3 0.05
40 60 0.95
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAAATCACTAGCA
Found at i:23040916 original size:39 final size:39
Alignment explanation
Indices: 23040802--23040971 Score: 200
Period size: 40 Copynumber: 4.3 Consensus size: 39
23040792 TTCTTCGAAT
* * * *
23040802 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGAC
* * * * *
23040841 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGAC
23040881 TTAGCCCGGATATATCACTAGCACAAATGCCTTC-GGAC
1 TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGAC
* *
23040919 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGAC
23040959 TTAGCCCGGATAT
1 TTAGCCCGGATAT
23040972 CATTCAAATG
Statistics
Matches: 113, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
38 14 0.12
39 44 0.39
40 55 0.49
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGAC
Found at i:23045173 original size:42 final size:42
Alignment explanation
Indices: 23045114--23045194 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
23045104 GGGACACAGA
*
23045114 CCGACCATATGTCTCACATGGCCAAAGACACGCCTGTGTGGC
1 CCGACCATATGTCTCACATGGCCAAAGACACGCCCGTGTGGC
* *
23045156 CCGACCATGTGTCTCACATGGCTAAAGACACGCCCGTGT
1 CCGACCATATGTCTCACATGGCCAAAGACACGCCCGTGT
23045195 CACAGGCCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.20
Consensus pattern (42 bp):
CCGACCATATGTCTCACATGGCCAAAGACACGCCCGTGTGGC
Found at i:23049893 original size:25 final size:25
Alignment explanation
Indices: 23049865--23049916 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
23049855 CTTGCTCTTG
23049865 TCCATAACCACAGTCCCTCTAGCTA
1 TCCATAACCACAGTCCCTCTAGCTA
23049890 TCCATAACCACAGTCCCTCTAGCTA
1 TCCATAACCACAGTCCCTCTAGCTA
23049915 TC
1 TC
23049917 ACATGTCCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.40, G:0.08, T:0.25
Consensus pattern (25 bp):
TCCATAACCACAGTCCCTCTAGCTA
Found at i:23055186 original size:30 final size:30
Alignment explanation
Indices: 23055152--23055212 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
23055142 TCCTTAACTC
23055152 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
23055182 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
23055212 A
1 A
23055213 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:23061130 original size:390 final size:390
Alignment explanation
Indices: 23060411--23061191 Score: 1535
Period size: 390 Copynumber: 2.0 Consensus size: 390
23060401 GACTATTTAT
23060411 TTTTCTATTTGAGCGGCGTAGGAGGTGGAGTTGGACTGAAACTCTATGGTTGAAGTGATCATAAG
1 TTTTCTATTTGAGCGGCGTAGGAGGTGGAGTTGGACTGAAACTCTATGGTTGAAGTGATCATAAG
23060476 AATGAGGAATTTTCCTATTGGTTGGGAGTAATCCCATATCGGGAAGCTAACATAAGAGTGGATGC
66 AATGAGGAATTTTCCTATTGGTTGGGAGTAATCCCATATCGGGAAGCTAACATAAGAGTGGATGC
23060541 GAAGCTGGCTTTAAATAGAGAGAACCACGAGGAGAGTAAAGGTACCTTTCTTGGCTGATCCCTTT
131 GAAGCTGGCTTTAAATAGAGAGAACCACGAGGAGAGTAAAGGTACCTTTCTTGGCTGATCCCTTT
23060606 CGCTTTATGGCGTGCTCATTTGGGTTGGGCGACGGCTAAGAGTGCTCGGAGCGTGGATTAACTCC
196 CGCTTTATGGCGTGCTCATTTGGGTTGGGCGACGGCTAAGAGTGCTCGGAGCGTGGATTAACTCC
23060671 AGTCTCCAATCAGTTGTGTATTTCTCACTACTCTAGCTGTAGGATGGCTACTTTGGGCCACGATG
261 AGTCTCCAATCAGTTGTGTATTTCTCACTACTCTAGCTGTAGGATGGCTACTTTGGGCCACGATG
23060736 GGCCAAAAGGGGCCATGTAGGCCCAATGGGCTTTCGGGCCCAATTGGATAAGTTGTTTGATTGTG
326 GGCCAAAAGGGGCCATGTAGGCCCAATGGGCTTTCGGGCCCAATTGGATAAGTTGTTTGATTGTG
*
23060801 TTTTCTATTTGAGCGGCGTAGGAGGTGGAGTTGGACTGAAACTCTGTGGTTGAAGTGATCATAAG
1 TTTTCTATTTGAGCGGCGTAGGAGGTGGAGTTGGACTGAAACTCTATGGTTGAAGTGATCATAAG
23060866 AATGAGGAATTTTCCTATTGGTTGGGAGTAATCCCATATCGGGAAGCTAACATAAGAGTGGATGC
66 AATGAGGAATTTTCCTATTGGTTGGGAGTAATCCCATATCGGGAAGCTAACATAAGAGTGGATGC
23060931 GAAGCTGGCTTTAAATAGAGAGAACCACGAGGAGAGTAAAGGTACCTTTCTTGGCTGATCCCTTT
131 GAAGCTGGCTTTAAATAGAGAGAACCACGAGGAGAGTAAAGGTACCTTTCTTGGCTGATCCCTTT
23060996 CGCTTTATGGCGTGCTCATTTGGGTTGGGCGACGGCTAAGAGTGCTCGGAGCGTGGATTAACTCC
196 CGCTTTATGGCGTGCTCATTTGGGTTGGGCGACGGCTAAGAGTGCTCGGAGCGTGGATTAACTCC
*
23061061 AGTCTCCAATCAGTTGTGTATTTCTCACTACTTTAGCTGTAGGATGGCTACTTTGGGCCACGATG
261 AGTCTCCAATCAGTTGTGTATTTCTCACTACTCTAGCTGTAGGATGGCTACTTTGGGCCACGATG
*
23061126 GGCCAAAAGGGGCCATGTGGGCCCAATGGGCTTTCGGGCCCAATTGGATAAGTTGTTTGATTGTG
326 GGCCAAAAGGGGCCATGTAGGCCCAATGGGCTTTCGGGCCCAATTGGATAAGTTGTTTGATTGTG
23061191 T
1 T
23061192 AGTAAATATT
Statistics
Matches: 388, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
390 388 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (390 bp):
TTTTCTATTTGAGCGGCGTAGGAGGTGGAGTTGGACTGAAACTCTATGGTTGAAGTGATCATAAG
AATGAGGAATTTTCCTATTGGTTGGGAGTAATCCCATATCGGGAAGCTAACATAAGAGTGGATGC
GAAGCTGGCTTTAAATAGAGAGAACCACGAGGAGAGTAAAGGTACCTTTCTTGGCTGATCCCTTT
CGCTTTATGGCGTGCTCATTTGGGTTGGGCGACGGCTAAGAGTGCTCGGAGCGTGGATTAACTCC
AGTCTCCAATCAGTTGTGTATTTCTCACTACTCTAGCTGTAGGATGGCTACTTTGGGCCACGATG
GGCCAAAAGGGGCCATGTAGGCCCAATGGGCTTTCGGGCCCAATTGGATAAGTTGTTTGATTGTG
Found at i:23061273 original size:27 final size:27
Alignment explanation
Indices: 23061243--23061568 Score: 379
Period size: 27 Copynumber: 12.1 Consensus size: 27
23061233 GCTAGCATTG
23061243 CCGAAATACCCCTGTAAGGTAGAATTA
1 CCGAAATACCCCTGTAAGGTAGAATTA
*
23061270 CCGAAATACCCCTATAAGGTAGAATTA
1 CCGAAATACCCCTGTAAGGTAGAATTA
* * *
23061297 -CTAAAGTACCCCTATAAGGTAAAATTA
1 CCGAAA-TACCCCTGTAAGGTAGAATTA
*
23061324 CCAAAATACCCCTGTAAGGTAGAATTA
1 CCGAAATACCCCTGTAAGGTAGAATTA
* *
23061351 -CTAAAGTACCCCTATAAGGTAGAATTA
1 CCGAAA-TACCCCTGTAAGGTAGAATTA
*
23061378 CCGAAATACCCCTGTAGGGTAGAATTA
1 CCGAAATACCCCTGTAAGGTAGAATTA
**
23061405 CTAAAATACCCCTGTAAGGTAGAATTA
1 CCGAAATACCCCTGTAAGGTAGAATTA
* *
23061432 TCGAAATACCCCTGTAGGGTAGAATTA
1 CCGAAATACCCCTGTAAGGTAGAATTA
* ** * *
23061459 CTGAAATACCATTGTAGGGTAGAAATA
1 CCGAAATACCCCTGTAAGGTAGAATTA
* *
23061486 CCAAAATACCCCTGTAGGGTAGAATTA
1 CCGAAATACCCCTGTAAGGTAGAATTA
*
23061513 CCAAAATACCCCTGT-AGAGTAGAATTA
1 CCGAAATACCCCTGTAAG-GTAGAATTA
* * ** *
23061540 CCGAGATACCCTTGTGGGGTAAAATTA
1 CCGAAATACCCCTGTAAGGTAGAATTA
23061567 CC
1 CC
23061569 ATTTTGCCCC
Statistics
Matches: 259, Mismatches: 34, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
26 9 0.03
27 241 0.93
28 9 0.03
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (27 bp):
CCGAAATACCCCTGTAAGGTAGAATTA
Found at i:23061388 original size:81 final size:81
Alignment explanation
Indices: 23061246--23061569 Score: 422
Period size: 81 Copynumber: 4.0 Consensus size: 81
23061236 AGCATTGCCG
*
23061246 AAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTATAAGGTAGAATTA-CTAAAGTACCCCT
1 AAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTATAAGGTAGAATTACCGAAA-TACCCCT
* *
23061310 ATAAGGTAAAATTACCA
65 GTAGGGTAAAATTACCA
*
23061327 AAATACCCCTGTAAGGTAGAATTA-CTAAAGTACCCCTATAAGGTAGAATTACCGAAATACCCCT
1 AAATACCCCTGTAAGGTAGAATTACCGAAA-TACCCCTATAAGGTAGAATTACCGAAATACCCCT
* *
23061391 GTAGGGTAGAATTACTA
65 GTAGGGTAAAATTACCA
* * * * **
23061408 AAATACCCCTGTAAGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCATTG
1 AAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTG
23061473 TAGGGTAGAAA-TACCA
66 TAGGGTA-AAATTACCA
* * * * *
23061489 AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGT-AGAGTAGAATTACCGAGATACCCTT
1 AAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTATAAG-GTAGAATTACCGAAATACCCCT
*
23061553 GTGGGGTAAAATTACCA
65 GTAGGGTAAAATTACCA
23061570 TTTTGCCCCT
Statistics
Matches: 215, Mismatches: 22, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
80 8 0.04
81 197 0.92
82 10 0.05
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.24
Consensus pattern (81 bp):
AAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTG
TAGGGTAAAATTACCA
Found at i:23061569 original size:54 final size:54
Alignment explanation
Indices: 23061246--23061567 Score: 439
Period size: 54 Copynumber: 6.0 Consensus size: 54
23061236 AGCATTGCCG
* *
23061246 AAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTATAAGGTAGAATTACTA
1 AAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTA
* * * * *
23061300 AAGTACCCCTATAAGGTAAAATTACCAAAATACCCCTGTAAGGTAGAATTACTA
1 AAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTA
* *
23061354 AAGTACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTA
* *
23061408 AAATACCCCTGTAAGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTA
** * * * *
23061462 AAATACCATTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACCA
1 AAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTA
* * * *
23061516 AAATACCCCTGT-AGAGTAGAATTACCGAGATACCCTTGTGGGGTAAAATTAC
1 AAATACCCCTGTAAG-GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTAC
23061568 CATTTTGCCC
Statistics
Matches: 238, Mismatches: 29, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
53 1 0.00
54 237 1.00
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.24
Consensus pattern (54 bp):
AAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTA
Found at i:23061847 original size:24 final size:25
Alignment explanation
Indices: 23061771--23061840 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
23061761 AGGAAGTGCT
* * * *
23061771 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
23061796 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
23061821 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
23061841 ATTAAAAGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:23064888 original size:23 final size:23
Alignment explanation
Indices: 23064858--23064909 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
23064848 GGAACGAAAC
23064858 AGAACATCCCCAAAGCAAATAAT
1 AGAACATCCCCAAAGCAAATAAT
* **
23064881 AGAACATCGCCAAAGTGAATAAT
1 AGAACATCCCCAAAGCAAATAAT
23064904 AGAACA
1 AGAACA
23064910 CCGTCGAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.52, C:0.21, G:0.13, T:0.13
Consensus pattern (23 bp):
AGAACATCCCCAAAGCAAATAAT
Found at i:23071479 original size:17 final size:17
Alignment explanation
Indices: 23071437--23071479 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
23071427 GCAAATTTTT
*
23071437 AAAGTTGTAGGGGTCAC
1 AAAGCTGTAGGGGTCAC
* *
23071454 AAAGTTGTAGGGGTCGC
1 AAAGCTGTAGGGGTCAC
*
23071471 ATAGCTGTA
1 AAAGCTGTA
23071480 TGACTCACCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.28, C:0.12, G:0.35, T:0.26
Consensus pattern (17 bp):
AAAGCTGTAGGGGTCAC
Found at i:23078076 original size:25 final size:27
Alignment explanation
Indices: 23078023--23078076 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
23078013 ATTCAACAAC
* *
23078023 TAGGGGTATTTTGGTCATTTTTTCCCT
1 TAGGGGCATTTTGGTCATATTTTCCCT
23078050 TAGGGGCATTTTGGT-A-ATTTTCCCT
1 TAGGGGCATTTTGGTCATATTTTCCCT
23078075 TA
1 TA
23078077 ATTACAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 10 0.40
26 1 0.04
27 14 0.56
ACGTcount: A:0.15, C:0.15, G:0.22, T:0.48
Consensus pattern (27 bp):
TAGGGGCATTTTGGTCATATTTTCCCT
Found at i:23078346 original size:28 final size:29
Alignment explanation
Indices: 23078312--23078425 Score: 144
Period size: 29 Copynumber: 4.0 Consensus size: 29
23078302 TCATATACTA
* *
23078312 GGCCCATTAAGCCC-AATCATATTCATAT
1 GGCCCATTAGGCCCAAATCACATTCATAT
*
23078340 GGCCCATTAGGCCCAAATCAC-TTATATAT
1 GGCCCATTAGGCCCAAATCACATT-CATAT
*
23078369 GGCCCATTAGGCCCAAATCACATTTATAT
1 GGCCCATTAGGCCCAAATCACATTCATAT
* *
23078398 GGCCCGTTAGGCCC-AGTCACATTCATAT
1 GGCCCATTAGGCCCAAATCACATTCATAT
23078426 TCATGCTCAC
Statistics
Matches: 77, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
28 27 0.35
29 48 0.62
30 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (29 bp):
GGCCCATTAGGCCCAAATCACATTCATAT
Found at i:23078661 original size:16 final size:16
Alignment explanation
Indices: 23078636--23078678 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
23078626 GTAGCCAAAC
* *
23078636 TTTTGACTTTTTGGCA
1 TTTTGGCTTTTCGGCA
23078652 TTTTGGCTTTTCGGCA
1 TTTTGGCTTTTCGGCA
*
23078668 TTTCGGCTTTT
1 TTTTGGCTTTT
23078679 GCCGATACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.07, C:0.16, G:0.21, T:0.56
Consensus pattern (16 bp):
TTTTGGCTTTTCGGCA
Found at i:23083646 original size:16 final size:17
Alignment explanation
Indices: 23083614--23083649 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
23083604 ACAAAGAAAG
23083614 TTTAGGATTTCGAGATT
1 TTTAGGATTTCGAGATT
*
23083631 TTTAGG-TTTCGGGATT
1 TTTAGGATTTCGAGATT
23083647 TTT
1 TTT
23083650 GGGGTGTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.17, C:0.06, G:0.25, T:0.53
Consensus pattern (17 bp):
TTTAGGATTTCGAGATT
Found at i:23092140 original size:93 final size:94
Alignment explanation
Indices: 23091983--23092154 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 94
23091973 GCCCATAAGT
* * *
23091983 GAACTCGAACCTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 GAACTCGAACCTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23092048 ACGAGCTCGGATGCCTAGTTACATCTCTC
66 ACGAGCTCGGATGCCTAGTTACATCTCTC
* *
23092077 GAACTCGGA-CTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACCTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
23092141 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
23092155 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
93 64 0.89
94 8 0.11
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (94 bp):
GAACTCGAACCTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:23092151 original size:46 final size:46
Alignment explanation
Indices: 23091975--23092151 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
23091965 TGTAACCCGC
* * *
23091975 CCATAAGTGAACTCGAACCTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGA-CTCAACTCAACGAGCTCGGACATTCGCAT
* *
23092022 CCATGAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
23092068 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
23092115 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
23092152 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 53 0.49
47 47 0.43
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:23092170 original size:46 final size:45
Alignment explanation
Indices: 23092027--23092170 Score: 129
Period size: 46 Copynumber: 3.1 Consensus size: 45
23092017 CGCATCCATG
*
23092027 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* *
23092076 --CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
23092119 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
23092166 AGTGA
1 AGTGA
23092171 CATGTCACTT
Statistics
Matches: 80, Mismatches: 5, Indels: 23
0.74 0.05 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 1 0.01
46 34 0.43
47 29 0.36
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:23094505 original size:15 final size:15
Alignment explanation
Indices: 23094483--23094530 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
23094473 AAGAAACCGA
23094483 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
23094498 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
23094512 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
23094528 ATA
1 ATA
23094531 CGATACTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:23094515 original size:30 final size:28
Alignment explanation
Indices: 23094474--23094530 Score: 87
Period size: 30 Copynumber: 2.0 Consensus size: 28
23094464 AAAGATAACA
*
23094474 AGAAACCGAATAAAGAAATCCAAGATAG
1 AGAAACCGAATAAAGAAACCCAAGATAG
23094502 AGAAATCCAGAATAAAGAAACCCAAGATA
1 AGAAA-CC-GAATAAAGAAACCCAAGATA
23094531 CGATACTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 5 0.19
29 2 0.08
30 19 0.73
ACGTcount: A:0.58, C:0.16, G:0.16, T:0.11
Consensus pattern (28 bp):
AGAAACCGAATAAAGAAACCCAAGATAG
Found at i:23097553 original size:93 final size:93
Alignment explanation
Indices: 23097441--23097611 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
23097431 GCCCATAAGT
* *
23097441 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23097506 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
23097534 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
23097599 CGAGTTCGGATGC
66 CGAGCTCGGATGC
23097612 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:23097608 original size:46 final size:46
Alignment explanation
Indices: 23097433--23097608 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
23097423 TGTAACCCGC
* *
23097433 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
23097479 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
23097525 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
23097572 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
23097609 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:23101800 original size:40 final size:39
Alignment explanation
Indices: 23101716--23101938 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 39
23101706 TTGAATGATG
* * * *
23101716 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
23101756 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
23101796 TCCGGGCTAAGCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
23101834 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
*
23101874 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
23101914 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
23101939 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 25 0.15
39 52 0.32
40 77 0.48
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23101855 original size:78 final size:78
Alignment explanation
Indices: 23101716--23101938 Score: 279
Period size: 78 Copynumber: 2.8 Consensus size: 78
23101706 TTGAATGATG
* * * * * *
23101716 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCATT
*
23101780 TGTGCGAGATACTAAT
63 TGTGCGAGATACTAAA
*
23101796 TCCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 TCCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
*
23101861 GCGAGTTACTAAA
66 GCGAGATACTAAA
* * *
23101874 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTT
23101938 G
64 G
23101939 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
77 1 0.01
78 60 0.47
79 53 0.42
80 13 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGATACTAAA
Found at i:23101956 original size:79 final size:78
Alignment explanation
Indices: 23101716--23101971 Score: 234
Period size: 79 Copynumber: 3.2 Consensus size: 78
23101706 TTGAATGATG
* * * * * * *
23101716 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGT-CCGAAGGCATTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCATT
** *
23101780 TGTGCGAGAT-ACTAAT
63 TGAACGAG-TGACTAAA
* * * *
23101796 TCCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 TCCGGGTTAAGTCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGA
* *
23101861 GCGAGTTACTAAA
66 ACGAGTGACTAAA
*
23101874 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTT
*
23101938 GAACGAG-GAGCTATA
64 GAACGAGTGA-CTAAA
*
23101953 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTT-AAGTCCGAAGG
23101972 TACGTGATTT
Statistics
Matches: 152, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
77 2 0.01
78 64 0.42
79 73 0.48
80 13 0.09
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGA
ACGAGTGACTAAA
Found at i:23113656 original size:27 final size:27
Alignment explanation
Indices: 23113623--23113827 Score: 252
Period size: 27 Copynumber: 7.6 Consensus size: 27
23113613 TAAATTGTAC
23113623 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
23113650 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
23113677 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23113703 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
23113731 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
23113759 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
23113786 AGCACTAAGTGTGCGAGTTGA-TGATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
23113813 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23113828 GACTCAATAT
Statistics
Matches: 155, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 131 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:23117373 original size:40 final size:40
Alignment explanation
Indices: 23117275--23117492 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
23117265 TGGTTGATAA
*
23117275 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* * *
23117316 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
23117356 CCGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
23117396 CCGAGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
23117436 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
23117475 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
23117493 TACTTGGCTT
Statistics
Matches: 156, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
38 15 0.10
39 15 0.10
40 99 0.63
41 23 0.15
42 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:23120229 original size:84 final size:84
Alignment explanation
Indices: 23120088--23120241 Score: 213
Period size: 84 Copynumber: 1.8 Consensus size: 84
23120078 GTGTTCTCGT
* * * *
23120088 GTAAGACCACGTCTGGGACATTAGCATCGATATGTGATCACGTGTAAGACCATGTCTAGGACATC
1 GTAAGACCACGTCTGGGACAGTAGCATCGATATGAGATCACATGTAAGACCACGTCTAGGACATC
23120153 GGCATCGTATTTGATTCGG
66 GGCATCGTATTTGATTCGG
* *
23120172 GTAAGACC-CTGTCTGGGACAGTGGCATTGATATGAGAT-AGCATGTAAGACCACGTCTAGGACA
1 GTAAGACCAC-GTCTGGGACAGTAGCATCGATATGAGATCA-CATGTAAGACCACGTCTAGGACA
*
23120235 TTGGCAT
64 TCGGCAT
23120242 TGTACGATAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
83 2 0.03
84 59 0.97
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (84 bp):
GTAAGACCACGTCTGGGACAGTAGCATCGATATGAGATCACATGTAAGACCACGTCTAGGACATC
GGCATCGTATTTGATTCGG
Found at i:23120243 original size:43 final size:42
Alignment explanation
Indices: 23120085--23120241 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 42
23120075 TATGTGTTCT
* *
23120085 CGTGTAAGACCACGTCTGGGACATTAGCATCGATATGTGATCA
1 CGTGTAAGACCACGTCTAGGACATTGGCATCGATATGTGAT-A
* * * *
23120128 CGTGTAAGACCATGTCTAGGACATCGGCATCG-TATTTGATT
1 CGTGTAAGACCACGTCTAGGACATTGGCATCGATATGTGATA
* * * * *
23120169 CGGGTAAGACC-CTGTCTGGGACAGTGGCATTGATATGAGATA
1 CGTGTAAGACCAC-GTCTAGGACATTGGCATCGATATGTGATA
*
23120211 GCATGTAAGACCACGTCTAGGACATTGGCAT
1 -CGTGTAAGACCACGTCTAGGACATTGGCAT
23120242 TGTACGATAT
Statistics
Matches: 91, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
41 25 0.27
42 13 0.14
43 52 0.57
44 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTAGGACATTGGCATCGATATGTGATA
Found at i:23132961 original size:26 final size:26
Alignment explanation
Indices: 23132931--23133038 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
23132921 TGAAATTCCC
*
23132931 ATCATCGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
23132957 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
23132983 ATCATGAAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
23133009 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
23133035 ATCA
1 ATCA
23133039 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:23137221 original size:42 final size:43
Alignment explanation
Indices: 23137099--23137271 Score: 179
Period size: 43 Copynumber: 4.0 Consensus size: 43
23137089 ACATAGGATT
* * * *
23137099 TCGATATGTGATTTTGTGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
* * *
23137142 TCGAT-TTGAGATTTACGTGTAAGACCATGTTTAGGACATTGGCA
1 TCGATATT-TGATTT-CGTGTAAGACCATGTCTGGGACATTGGCA
* *
23137186 TC-ATATTTGATTTCGTGTAAGACCTTGTCTGGGACAATGGCA
1 TCGATATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
* * * * * *
23137228 TCGATATTTGATTACATATAAGACCACGTCTAGGACGTTGGCA
1 TCGATATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
23137271 T
1 T
23137272 TGTATGAGCT
Statistics
Matches: 106, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
42 28 0.26
43 50 0.47
44 28 0.26
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (43 bp):
TCGATATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
Found at i:23137358 original size:20 final size:20
Alignment explanation
Indices: 23137330--23137371 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
23137320 TTCAACGGGC
23137330 ATTTCAGGAAACAAATAACT
1 ATTTCAGGAAACAAATAACT
*
23137350 ATTTTAGGAAACAAATAACT
1 ATTTCAGGAAACAAATAACT
23137370 AT
1 AT
23137372 GCGAATGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.29
Consensus pattern (20 bp):
ATTTCAGGAAACAAATAACT
Found at i:23139889 original size:25 final size:25
Alignment explanation
Indices: 23139861--23139913 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
23139851 ATAGAATATT
23139861 GAAGTAAGTTGGTTTGTGTCATTGC
1 GAAGTAAGTTGGTTTGTGTCATTGC
23139886 GAAGTAAGTTGGTTTGTGTCATTGC
1 GAAGTAAGTTGGTTTGTGTCATTGC
23139911 GAA
1 GAA
23139914 TGCACTTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.23, C:0.08, G:0.32, T:0.38
Consensus pattern (25 bp):
GAAGTAAGTTGGTTTGTGTCATTGC
Found at i:23152191 original size:34 final size:34
Alignment explanation
Indices: 23152143--23152209 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
23152133 TTGCAATATT
23152143 TGTGTGGCCTTAGCCCAAT-ACAGTATCAGTATCAG
1 TGTGTGGCCTTAGCCC-ATCACAGTA-CAGTATCAG
*
23152178 TGTG-GGCCTTAGCCCATCTCAGTACAGTATCA
1 TGTGTGGCCTTAGCCCATCACAGTACAGTATCA
23152210 TACATGCATA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 10 0.33
34 16 0.53
35 4 0.13
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.28
Consensus pattern (34 bp):
TGTGTGGCCTTAGCCCATCACAGTACAGTATCAG
Found at i:23155865 original size:40 final size:40
Alignment explanation
Indices: 23155805--23155883 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 40
23155795 TTTGATGTGT
*
23155805 ATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTAC
1 ATCCAGGCTTAAAGACCCGCAGGCTATATGCTGGAATTAC
23155845 ATCCAGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
1 ATCCAGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
23155884 TACCCGGACT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (40 bp):
ATCCAGGCTTAAAGACCCGCAGGCTATATGCTGGAATTAC
Found at i:23155896 original size:40 final size:39
Alignment explanation
Indices: 23155807--23155958 Score: 153
Period size: 39 Copynumber: 3.8 Consensus size: 39
23155797 TGATGTGTAT
* *
23155807 CCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTACATC
1 CCGGACTT-AAGACCCGCAGGCTATATGCTGGAATTATA-C
*
23155848 CAGG-CTTAAAGACCCGCAGGCTATATGCTGGAATTATAC
1 CCGGACTT-AAGACCCGCAGGCTATATGCTGGAATTATAC
** * * * *
23155887 CCGGACTTAAGGTCCGTAGGCTATATGCCGAAATTATAA
1 CCGGACTTAAGACCCGCAGGCTATATGCTGGAATTATAC
** **
23155926 CCGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 CCGGACTTAAGACCCGCAGGCTATATGCTGGAA
23155959 ATATGTCCGG
Statistics
Matches: 96, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 57 0.59
40 36 0.38
41 3 0.03
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (39 bp):
CCGGACTTAAGACCCGCAGGCTATATGCTGGAATTATAC
Found at i:23157783 original size:27 final size:27
Alignment explanation
Indices: 23157602--23157772 Score: 236
Period size: 27 Copynumber: 6.3 Consensus size: 27
23157592 TGGATAAGTT
23157602 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
23157629 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
* ** * *
23157656 GTAGACTTATTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
23157683 GTAGAATTACCGAAATACCCCTGT-AG
1 GTAGAATTACCGAAATACCCCTGTAAG
* *
23157709 GACAGAATTACCGAAATACCCTTGTAAG
1 G-TAGAATTACCGAAATACCCCTGTAAG
** *
23157737 GTAGAATTATTGAAATACCCCTGTACG
1 GTAGAATTACCGAAATACCCCTGTAAG
23157764 GTAGAATTA
1 GTAGAATTA
23157773 TCAAGATACC
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
26 2 0.02
27 120 0.96
28 3 0.02
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:23157793 original size:27 final size:27
Alignment explanation
Indices: 23157602--23157801 Score: 231
Period size: 27 Copynumber: 7.4 Consensus size: 27
23157592 TGGATAAGTT
*
23157602 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
23157629 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* ** *
23157656 GTAGACTTATTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
23157683 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
** * *
23157710 ACAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
** *
23157737 GTAGAATTATTGAAATACCCCTGTACG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
23157764 GTAGAATTATC-AAGATACCCTTGTGGG
1 GTAGAATTACCGAA-ATACCCCTGTAGG
*
23157791 GTAAAATTACC
1 GTAGAATTACC
23157802 ATTTTTCCCC
Statistics
Matches: 147, Mismatches: 25, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
26 2 0.01
27 145 0.99
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:23157799 original size:81 final size:81
Alignment explanation
Indices: 23157602--23157801 Score: 285
Period size: 81 Copynumber: 2.5 Consensus size: 81
23157592 TGGATAAGTT
* *
23157602 GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAAGGTAGACTTATT
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAAGGTAGAATTATT
*
23157667 GAAATACCCCTATAGG
66 GAAATACCCCTATACG
** *
23157683 GTAGAATTACCGAAATACCCCTGTAGGACAGAATTACCGAAATACCCTTGTAAGGTAGAATTATT
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAAGGTAGAATTATT
*
23157748 GAAATACCCCTGTACG
66 GAAATACCCCTATACG
* * * *
23157764 GTAGAATTATC-AAGATACCCTTGTGGGGTAAAATTACC
1 GTAGAATTACCGAA-ATACCCCTGTAGGGTAGAATTACC
23157802 ATTTTTCCCC
Statistics
Matches: 105, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
80 2 0.02
81 103 0.98
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (81 bp):
GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAAGGTAGAATTATT
GAAATACCCCTATACG
Found at i:23159999 original size:25 final size:25
Alignment explanation
Indices: 23159971--23160021 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
23159961 TATTTGAAAC
23159971 GATGGTTTTGGGACCACAAATCTGA
1 GATGGTTTTGGGACCACAAATCTGA
23159996 GATGGTTTTGGGACCACAAATCTGA
1 GATGGTTTTGGGACCACAAATCTGA
23160021 G
1 G
23160022 TCAAAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (25 bp):
GATGGTTTTGGGACCACAAATCTGA
Found at i:23161256 original size:45 final size:45
Alignment explanation
Indices: 23161217--23161336 Score: 204
Period size: 45 Copynumber: 2.7 Consensus size: 45
23161207 TATGTGTTCT
23161217 CGTGTAAGACCATGTCTGGGAAGTTGGCATCGATATATGTGGTTA
1 CGTGTAAGACCATGTCTGGGAAGTTGGCATCGATATATGTGGTTA
*
23161262 CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATATGTGGTTA
1 CGTGTAAGACCATGTCTGGGAAGTTGGCATCGATATATGTGGTTA
* * *
23161307 CGTGTAAGACCACGTTTGGGATGTTGGCAT
1 CGTGTAAGACCATGTCTGGGAAGTTGGCAT
23161337 TATACGATAT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 71 1.00
ACGTcount: A:0.23, C:0.15, G:0.32, T:0.31
Consensus pattern (45 bp):
CGTGTAAGACCATGTCTGGGAAGTTGGCATCGATATATGTGGTTA
Found at i:23169104 original size:33 final size:34
Alignment explanation
Indices: 23169034--23169105 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 34
23169024 TTTGCATTTA
* *
23169034 TGATACTGTTACTATAATGGGCTCAGGCCCATAC
1 TGATAATGTTACTATAATGGGCTAAGGCCCATAC
*
23169068 TGATAATGTTACTGTAATGGGCTAAGG-CCATAC
1 TGATAATGTTACTATAATGGGCTAAGGCCCATAC
23169101 TGATA
1 TGATA
23169106 CTGGGCTGTC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
33 11 0.31
34 24 0.69
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (34 bp):
TGATAATGTTACTATAATGGGCTAAGGCCCATAC
Found at i:23178586 original size:39 final size:39
Alignment explanation
Indices: 23178475--23178651 Score: 177
Period size: 39 Copynumber: 4.5 Consensus size: 39
23178465 TTGAATGCTG
* * *
23178475 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTA-AGTGACTAT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGA-T-ACAAT
**
23178514 ATCCGGACTAAGAT-CCGAAGG-CTTTGTGCGAGATACAAT
1 -TCCGGGTTAAG-TCCCGAAGGCCTTTGTGCGAGATACAAT
23178553 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACAAT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACAAT
* * * *
23178592 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTA-AAA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAG--ATACAAT
23178632 TCCGGGTTAAGT-CCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
23178652 ATTGAATGAG
Statistics
Matches: 122, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
37 1 0.01
38 16 0.13
39 60 0.49
40 41 0.34
41 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACAAT
Found at i:23189474 original size:18 final size:18
Alignment explanation
Indices: 23189451--23189495 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
23189441 TTCTTTATTA
*
23189451 TTATTTATCTTCCTTTTT
1 TTATTTATCTTACTTTTT
* *
23189469 TTATTTTATTTTATTTTTT
1 TTA-TTTATCTTACTTTTT
23189488 TTATTTAT
1 TTATTTAT
23189496 TACTATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.78
Consensus pattern (18 bp):
TTATTTATCTTACTTTTT
Found at i:23189502 original size:19 final size:19
Alignment explanation
Indices: 23189464--23189503 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
23189454 TTTATCTTCC
*
23189464 TTTTTTTATTTTATTTTAT
1 TTTTTTTATTTTATTCTAT
23189483 TTTTTTTA-TTTATTACTAT
1 TTTTTTTATTTTATT-CTAT
23189502 TT
1 TT
23189504 AATATTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTTTTATTTTATTCTAT
Found at i:23233557 original size:93 final size:93
Alignment explanation
Indices: 23233450--23233621 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
23233440 GCCCCTAAGT
* *
23233450 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23233515 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
23233543 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23233608 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
23233622 CAAACATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:23233617 original size:46 final size:46
Alignment explanation
Indices: 23233445--23233617 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
23233435 AACCCGCCCC
* * * *
23233445 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
23233491 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
23233539 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
23233584 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
23233618 TGCCCAAACA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 61 0.58
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:23234076 original size:30 final size:30
Alignment explanation
Indices: 23234042--23234102 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
23234032 CATTTAATAC
23234042 AAACTTTGGAAAAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
23234072 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
23234102 A
1 A
23234103 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:23237210 original size:27 final size:26
Alignment explanation
Indices: 23237179--23237266 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 26
23237169 TTATTTACTT
*
23237179 GTAAAATGACTGAAATACCCTCATAGG
1 GTAAAATGACCGAAATACCCT-ATAGG
23237206 GTAAAATGACCGAAATATCCCTATAGG
1 GTAAAATGACCGAAATA-CCCTATAGG
* * *
23237233 GTAAAATGACCGTAATACCCCTGTAAG
1 GTAAAATGACCGAAATA-CCCTATAGG
23237260 GTAAAAT
1 GTAAAAT
23237267 AACTGTTTTG
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 51 0.93
28 4 0.07
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (26 bp):
GTAAAATGACCGAAATACCCTATAGG
Found at i:23237291 original size:27 final size:27
Alignment explanation
Indices: 23237259--23237446 Score: 213
Period size: 27 Copynumber: 7.0 Consensus size: 27
23237249 ACCCCTGTAA
* *
23237259 GGTAAAATAACTGTTTTGCCCTTATGT
1 GGTAAAATGACAGTTTTGCCCTTATGT
* *
23237286 GTTAAAATGAC-GATTTTGCACTTATGT
1 GGTAAAATGACAG-TTTTGCCCTTATGT
* *
23237313 GATAAAATGACAGTTTTGGCCTTATGT
1 GGTAAAATGACAGTTTTGCCCTTATGT
* *
23237340 GGTAAAATGACGGTTTTACCCTTATGT
1 GGTAAAATGACAGTTTTGCCCTTATGT
* *
23237367 GGCAAAATGACTA-TTTTTCCC-T-TGT
1 GGTAAAATGAC-AGTTTTGCCCTTATGT
* *
23237392 GTTAAAATGACGGTTTTGCCCTTATGT
1 GGTAAAATGACAGTTTTGCCCTTATGT
*
23237419 GGTAAAATGACAGTTTTGCCCCTATGT
1 GGTAAAATGACAGTTTTGCCCTTATGT
23237446 G
1 G
23237447 ATGTATGTTT
Statistics
Matches: 135, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
25 19 0.14
26 3 0.02
27 112 0.83
28 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAAAATGACAGTTTTGCCCTTATGT
Done.