Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 75 of 325
Found at i:23622343 original size:5 final size:5
Alignment explanation
Indices: 23622333--23622403 Score: 56
Period size: 5 Copynumber: 13.4 Consensus size: 5
23622323 TTATTTACTC
*
23622333 TTATT TTA-T TT-TT TTATTT TTATT TTGATTT TTATT TGATT TTGATT
1 TTATT TTATT TTATT TTA-TT TTATT TT-A-TT TTATT TTATT TT-ATT
*
23622380 TTATT TTCATT TCAATT TTATT TT
1 TTATT TT-ATT T-TATT TTATT TT
23622404 GAAAGACATA
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
4 6 0.11
5 24 0.44
6 20 0.37
7 4 0.07
ACGTcount: A:0.18, C:0.03, G:0.04, T:0.75
Consensus pattern (5 bp):
TTATT
Found at i:23622348 original size:19 final size:20
Alignment explanation
Indices: 23622326--23622365 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
23622316 ATTTTTATTA
23622326 TTTACTCTTATTTT-ATTTT
1 TTTACTCTTATTTTGATTTT
* *
23622345 TTTATTTTTATTTTGATTTT
1 TTTACTCTTATTTTGATTTT
23622365 T
1 T
23622366 ATTTGATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.78
Consensus pattern (20 bp):
TTTACTCTTATTTTGATTTT
Found at i:23622352 original size:6 final size:6
Alignment explanation
Indices: 23622315--23622391 Score: 59
Period size: 6 Copynumber: 12.8 Consensus size: 6
23622305 TGAATCCTCC
* * * *
23622315 TATTTT TATTATT TACTCT TATTTT ATTTTTT TATTTT TATTTT GATTTT
1 TATTTT TATT-TT TATTTT TATTTT -TATTTT TATTTT TATTTT TATTTT
* * *
23622365 TA-TTT GATTTT GA-TTT TATTTT CATTT
1 TATTTT TATTTT TATTTT TATTTT TATTT
23622392 CAATTTTATT
Statistics
Matches: 56, Mismatches: 11, Indels: 8
0.75 0.15 0.11
Matches are distributed among these distances:
5 8 0.14
6 38 0.68
7 10 0.18
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.74
Consensus pattern (6 bp):
TATTTT
Found at i:23622391 original size:17 final size:17
Alignment explanation
Indices: 23622344--23622403 Score: 68
Period size: 17 Copynumber: 3.5 Consensus size: 17
23622334 TATTTTATTT
*
23622344 TTTTATTTTTATTTTGA
1 TTTTATTTTCATTTTGA
*
23622361 TTTT-TATTTGATTTTGA
1 TTTTAT-TTTCATTTTGA
**
23622378 TTTTATTTTCATTTCAA
1 TTTTATTTTCATTTTGA
23622395 TTTTATTTT
1 TTTTATTTT
23622404 GAAAGACATA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
16 1 0.03
17 35 0.95
18 1 0.03
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.73
Consensus pattern (17 bp):
TTTTATTTTCATTTTGA
Found at i:23628622 original size:39 final size:40
Alignment explanation
Indices: 23628579--23628801 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
23628569 TCCTCGTTCA
* * * * *
23628579 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
23628618 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
23628658 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
23628698 AATGCCTTCGGGACTTAACCCGGATTTAGTACCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
23628738 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
23628778 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
23628802 CAGCATTCAA
Statistics
Matches: 162, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 37 0.23
40 117 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:23628810 original size:41 final size:41
Alignment explanation
Indices: 23628733--23628810 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
23628723 TTAGTACCTC
* * *
23628733 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
23628774 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
23628811 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:23636134 original size:29 final size:29
Alignment explanation
Indices: 23636092--23636151 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
23636082 TTATTTAATT
*
23636092 ATTACATTGTTCAAATCAGTCGATAAATC
1 ATTACATTGTTCAAATCAGTCCATAAATC
23636121 ATTACATTGTTCAAATCAGTCCATAAATC
1 ATTACATTGTTCAAATCAGTCCATAAATC
23636150 AT
1 AT
23636152 ACTTTGGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.35
Consensus pattern (29 bp):
ATTACATTGTTCAAATCAGTCCATAAATC
Found at i:23651882 original size:12 final size:13
Alignment explanation
Indices: 23651865--23651893 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
23651855 TCCTCCTATC
23651865 TTTTTA-TTTTTA
1 TTTTTATTTTTTA
23651877 TTTTTATTTTTTA
1 TTTTTATTTTTTA
23651890 TTTT
1 TTTT
23651894 CCTTTCAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:23656869 original size:48 final size:47
Alignment explanation
Indices: 23656730--23656870 Score: 140
Period size: 48 Copynumber: 2.9 Consensus size: 47
23656720 ATGATGCCTC
* * *
23656730 ATGCCAATGCCA-AGTCCGAGACATGGTCTTACACTGGCTCACATAACA
1 ATGCCAATGCCATA-TCCCAGAAATGGTCTTACAC-GGATCACATAACA
* * * * * *
23656778 AGGCCAATGCCATGTCCTAGAATTTGTCTTATACGAGATCACATAACA
1 ATGCCAATGCCATATCCCAGAAATGGTCTTACACG-GATCACATAACA
* *
23656826 ATGCCGATGCCATATCCCAGAAATGGTCTTACACGGTTACACATA
1 ATGCCAATGCCATATCCCAGAAATGGTCTTACACGGAT-CACATA
23656871 TTTCCATGGT
Statistics
Matches: 74, Mismatches: 16, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
47 3 0.04
48 71 0.96
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (47 bp):
ATGCCAATGCCATATCCCAGAAATGGTCTTACACGGATCACATAACA
Found at i:23657397 original size:21 final size:19
Alignment explanation
Indices: 23657350--23657397 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
23657340 TAGAGAAGCC
23657350 CACTTTT-CCACTATTTCA
1 CACTTTTACCACTATTTCA
* *
23657368 CACATTTACCACATATTTTA
1 CACTTTTACCAC-TATTTCA
23657388 CAACTTTTAC
1 C-ACTTTTAC
23657398 AAAATGTCCC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 6 0.25
19 4 0.17
20 7 0.29
21 7 0.29
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (19 bp):
CACTTTTACCACTATTTCA
Found at i:23663923 original size:21 final size:22
Alignment explanation
Indices: 23663897--23663937 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
23663887 TCATATCGTC
23663897 AAGTATCGATACC-AAATTCCA
1 AAGTATCGATACCTAAATTCCA
23663918 AAGTATCGATACCTAAATTC
1 AAGTATCGATACCTAAATTC
23663938 AAAATGATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (22 bp):
AAGTATCGATACCTAAATTCCA
Found at i:23665770 original size:73 final size:73
Alignment explanation
Indices: 23665614--23665759 Score: 256
Period size: 73 Copynumber: 2.0 Consensus size: 73
23665604 AAACATATCA
*
23665614 TAAACACATGTTATAACATAAATTCAATGGTCAATCATTCTTTAATAAAACCCAATTAAAGCATT
1 TAAACACATGTTATAACATAAATTAAATGGTCAATCATTCTTTAATAAAACCCAATTAAAGCATT
23665679 TGCATGTT
66 TGCATGTT
* * *
23665687 TAAACACATGTTATAACATCAATTAAATTGTCAATCATTCTTTAATAAAACCCAATTAAAGCGTT
1 TAAACACATGTTATAACATAAATTAAATGGTCAATCATTCTTTAATAAAACCCAATTAAAGCATT
23665752 TGCATGTT
66 TGCATGTT
23665760 GTCATACATG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 69 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.35
Consensus pattern (73 bp):
TAAACACATGTTATAACATAAATTAAATGGTCAATCATTCTTTAATAAAACCCAATTAAAGCATT
TGCATGTT
Found at i:23671319 original size:24 final size:25
Alignment explanation
Indices: 23671291--23671347 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
23671281 ATTTTATTCG
23671291 GTTCTATTCTG-TTTGAATTGCGTT
1 GTTCTATTCTGTTTTGAATTGCGTT
* ** *
23671315 GTTCTACTCTGTTTTGTTTTGCTTT
1 GTTCTATTCTGTTTTGAATTGCGTT
23671340 GTTCTATT
1 GTTCTATT
23671348 GTACTACCTC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.09, C:0.14, G:0.18, T:0.60
Consensus pattern (25 bp):
GTTCTATTCTGTTTTGAATTGCGTT
Found at i:23675007 original size:21 final size:21
Alignment explanation
Indices: 23674978--23675017 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
23674968 AATGGGAAAT
23674978 AAATAAAA-TTAAAGTAAATAA
1 AAATAAAATTTAAAG-AAATAA
*
23674999 AAATGAAATTTAAAGAAAT
1 AAATAAAATTTAAAGAAAT
23675018 CTAGACATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.25
Consensus pattern (21 bp):
AAATAAAATTTAAAGAAATAA
Found at i:23675764 original size:17 final size:17
Alignment explanation
Indices: 23675731--23675765 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
23675721 ATCTTTGTTA
23675731 TTGAAATATCATTATTG
1 TTGAAATATCATTATTG
*
23675748 TTGAAATATGATTATTG
1 TTGAAATATCATTATTG
23675765 T
1 T
23675766 AATAATATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.49
Consensus pattern (17 bp):
TTGAAATATCATTATTG
Found at i:23677606 original size:39 final size:39
Alignment explanation
Indices: 23677563--23677702 Score: 167
Period size: 39 Copynumber: 3.6 Consensus size: 39
23677553 AACATGTTTT
* * *
23677563 TGAGTATTGCGACATATGCTTAAATGTTGTTTAATTATA
1 TGAGTATTGCGATATATGCTTAAATGTTATGTAATTATA
* *
23677602 TGAGTATTGCGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGCGATATATGCTTAAATGTTATGTAATTATA
* * * * **
23677641 TAAGCATTGCGATATGTGCTCAAACATTATGTAATTATA
1 TGAGTATTGCGATATATGCTTAAATGTTATGTAATTATA
23677680 TGAGTATT--GATATATGCTTAAAT
1 TGAGTATTGCGATATATGCTTAAAT
23677703 TTAATGTGAT
Statistics
Matches: 83, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
37 12 0.14
39 71 0.86
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (39 bp):
TGAGTATTGCGATATATGCTTAAATGTTATGTAATTATA
Found at i:23679900 original size:22 final size:21
Alignment explanation
Indices: 23679872--23679979 Score: 76
Period size: 22 Copynumber: 4.8 Consensus size: 21
23679862 AACTCACCAT
23679872 AGCTCATAAGAGCTTA-TGTTTC
1 AGCTCA-AAGAGCTTACTG-TTC
**
23679894 AGCTCATTGGAG-TTACTGATTC
1 AGCTCA-AAGAGCTTACTG-TTC
23679916 AGCTCGAAAGAGCTTACTGTTC
1 AGCTC-AAAGAGCTTACTGTTC
* *
23679938 AGCTCAATAGAGCTTGCTATTTATC
1 AGCTCAA-AGAGCTTAC--TGT-TC
23679963 AGCTCAAGAGAGCTTAC
1 AGCTCAA-AGAGCTTAC
23679980 CGACCATGAC
Statistics
Matches: 70, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
21 5 0.07
22 39 0.56
23 7 0.10
24 2 0.03
25 17 0.24
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (21 bp):
AGCTCAAAGAGCTTACTGTTC
Found at i:23680896 original size:22 final size:20
Alignment explanation
Indices: 23680856--23680895 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
23680846 GAGACACGGA
23680856 TGTGTGTCTCAGCCGTGTGT
1 TGTGTGTCTCAGCCGTGTGT
23680876 TGTGTGTCTCAGCCGTGTGT
1 TGTGTGTCTCAGCCGTGTGT
23680896 GACACACGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.05, C:0.20, G:0.35, T:0.40
Consensus pattern (20 bp):
TGTGTGTCTCAGCCGTGTGT
Found at i:23689317 original size:40 final size:40
Alignment explanation
Indices: 23689222--23689479 Score: 319
Period size: 40 Copynumber: 6.5 Consensus size: 40
23689212 TGGATGATAA
* **
23689222 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTACAT
*
23689263 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
23689303 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
23689342 CTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 C-CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
23689383 CCGGGCTAAGTCTCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
23689423 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACAT
* *
23689462 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
23689480 TACTTGGCTT
Statistics
Matches: 198, Mismatches: 15, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
38 15 0.08
39 16 0.08
40 138 0.70
41 25 0.13
42 4 0.02
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:23694268 original size:31 final size:30
Alignment explanation
Indices: 23694233--23694309 Score: 95
Period size: 31 Copynumber: 2.6 Consensus size: 30
23694223 ATGTCATATT
* * *
23694233 TAGTATTTGAACTTTGACAAATCATCTTTTA
1 TAGTATTTGAACTTTAAAAAATCA-ATTTTA
23694264 TAGTATTTGAACTTTTAAAAAATCAATTTTA
1 TAGTATTTGAAC-TTTAAAAAATCAATTTTA
23694295 -A-TATTTGAACTTTAA
1 TAGTATTTGAACTTTAA
23694310 CGTCATTTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
28 5 0.12
29 9 0.21
30 1 0.02
31 17 0.40
32 10 0.24
ACGTcount: A:0.38, C:0.09, G:0.08, T:0.45
Consensus pattern (30 bp):
TAGTATTTGAACTTTAAAAAATCAATTTTA
Found at i:23700947 original size:10 final size:10
Alignment explanation
Indices: 23700934--23700959 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
23700924 TAAAATTAAA
23700934 AAAAAATAAT
1 AAAAAATAAT
23700944 AAAAAATAAT
1 AAAAAATAAT
23700954 AAAAAA
1 AAAAAA
23700960 AACTCCAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAATAAT
Found at i:23704800 original size:145 final size:145
Alignment explanation
Indices: 23704537--23704814 Score: 457
Period size: 145 Copynumber: 1.9 Consensus size: 145
23704527 TCTTGTGTAA
* *
23704537 TAGTCTTTCAAATGTTGAAGTTGGCAATACCTTAGTAAAAAGATCTGCTAAATTCTCACTAGAAC
1 TAGTCTTTCAAATGTTGAAGTTGGCAATACCTTAATAAAAAGATCTACTAAATTCTCACTAGAAC
*
23704602 GAATTTGTTGAACATTTATAGCACATCTTTTCTCAAGATCATAGGTGAAGAATAATTTTGGTGAA
66 AAATTTGTTGAACATTTATAGCACATCTTTTCTCAAGATCATAGGTGAAGAATAATTTTGGTGAA
23704667 ATATATTTCGTTCTG
131 ATATATTTCGTTCTG
* * * * *
23704682 TAGTCTTTCAAATGTTGGAGTTGGTAATGCCTTAATAAAATGATCTATTAAATTCTCACTAGAAC
1 TAGTCTTTCAAATGTTGAAGTTGGCAATACCTTAATAAAAAGATCTACTAAATTCTCACTAGAAC
* * *
23704747 AAATTTGTTGAACATTTATATCACCTCTTTTCTCAAGATCATGGGTGAAGAATAATTTTGGTGAA
66 AAATTTGTTGAACATTTATAGCACATCTTTTCTCAAGATCATAGGTGAAGAATAATTTTGGTGAA
23704812 ATA
131 ATA
23704815 CGTTTTGTTC
Statistics
Matches: 122, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
145 122 1.00
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.37
Consensus pattern (145 bp):
TAGTCTTTCAAATGTTGAAGTTGGCAATACCTTAATAAAAAGATCTACTAAATTCTCACTAGAAC
AAATTTGTTGAACATTTATAGCACATCTTTTCTCAAGATCATAGGTGAAGAATAATTTTGGTGAA
ATATATTTCGTTCTG
Found at i:23708612 original size:77 final size:78
Alignment explanation
Indices: 23708484--23708637 Score: 231
Period size: 77 Copynumber: 2.0 Consensus size: 78
23708474 AAATTTATCT
* * * *
23708484 TAATATTATTTTTCTTCCCTTTTAATAGATGCTTGATAAAGTTTCACTAAATGTTC-AGTCATAC
1 TAATATTATTTTTATTCCCTTTTAATAGATACTTAAAAAAGTTTCACTAAATGTTCAAG-CATAC
23708548 GACAGGTACGTGCA
65 GACAGGTACGTGCA
*
23708562 TAATATTATTTTTATTCCC-TTTAATAGATACTTAAAAAAGTTTCACTAAATGTTCAAGCATATG
1 TAATATTATTTTTATTCCCTTTTAATAGATACTTAAAAAAGTTTCACTAAATGTTCAAGCATACG
*
23708626 ATAGGTACGTGC
66 ACAGGTACGTGC
23708638 CCAATGTCCC
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
77 49 0.71
78 20 0.29
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (78 bp):
TAATATTATTTTTATTCCCTTTTAATAGATACTTAAAAAAGTTTCACTAAATGTTCAAGCATACG
ACAGGTACGTGCA
Found at i:23711908 original size:40 final size:40
Alignment explanation
Indices: 23711841--23712047 Score: 233
Period size: 40 Copynumber: 5.2 Consensus size: 40
23711831 CCTTCGGAGT
** *
23711841 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
*
23711880 TTAGCCCGGTTATAGTAACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* *
23711920 TTAGCCC-GATATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* * * *
23711959 TTAGCCCGGATATAGTAGCTCGCACGAATACCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* ** * *
23711999 TTAGCCCAGA-ATTAGCCACTAGCTCAAAAG-CTCTCGGGAC
1 TTAGCCCGGATA-TAGTAACTAGCACAAATGCCT-TCGGGAC
23712039 TTAGCCCGG
1 TTAGCCCGG
23712048 TTATCATCCG
Statistics
Matches: 143, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 43 0.30
40 100 0.70
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:23719993 original size:37 final size:38
Alignment explanation
Indices: 23719912--23720086 Score: 227
Period size: 37 Copynumber: 4.7 Consensus size: 38
23719902 GCCACTAGCT
23719912 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG--ATAGTAACTCGCA
23719952 CAAATGCCTTCGGGACTTAGCCCGGATA-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATAGTAACTCGCA
*
23719989 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TAGTAACTCGCA
* * * *
23720028 CAAATGCCTTC-GGACTT-GCCCGGA-ATTCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGATAGT-AACTCGCA
23720064 C-AATG-CTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
23720087 TTATCATCCG
Statistics
Matches: 124, Mismatches: 6, Indels: 14
0.86 0.04 0.10
Matches are distributed among these distances:
34 4 0.03
35 12 0.10
36 11 0.09
37 42 0.34
38 11 0.09
39 19 0.15
40 25 0.20
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.23
Consensus pattern (38 bp):
CAAATGCCTTCGGGACTTAGCCCGGATAGTAACTCGCA
Found at i:23720008 original size:77 final size:76
Alignment explanation
Indices: 23719905--23720090 Score: 256
Period size: 77 Copynumber: 2.5 Consensus size: 76
23719895 GGATATAGCC
*
23719905 ACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTC-GGACTT
23719970 AGCCCGG-ATAT-A
65 -GCCCGGAAT-TCA
* * *
23719982 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAGCTCGCACAAATGCCTTCGGACTTG
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTG
*
23720046 CCCGGAATTCC
66 CCCGGAATTCA
*
23720057 ACTAGCTC-AATG-CTTCGGGACTTAGCCCGGTTAT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
23720091 CATCCGAACA
Statistics
Matches: 98, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
73 19 0.19
74 12 0.12
75 14 0.14
76 22 0.22
77 31 0.32
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.25
Consensus pattern (76 bp):
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTG
CCCGGAATTCA
Found at i:23723843 original size:50 final size:49
Alignment explanation
Indices: 23723735--23723874 Score: 160
Period size: 49 Copynumber: 2.8 Consensus size: 49
23723725 GGTAACACGC
* * * *
23723735 CCATAAGCGAACTCGGACTCAACT--CAACGAGCTCGGGCGTTCGCACTT
1 CCATAAGTGAACTCGGACTCAACTAACAACGAGTTCGGACATTCGCAC-T
23723783 CCATAAGTGAACATCGGACTCAACTAACAACGAGTTCGGACATTCGGCA-T
1 CCATAAGTGAAC-TCGGACTCAACTAACAACGAGTTCGGACATTC-GCACT
*
23723833 CCATAAGTGAACTCGGACTCTAACTCAATCACCGAGTTCGGA
1 CCATAAGTGAACTCGGACTC-AACT-AA-CAACGAGTTCGGA
23723875 GCTCAACCAT
Statistics
Matches: 80, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
48 11 0.14
49 20 0.25
50 17 0.21
51 17 0.21
52 15 0.19
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (49 bp):
CCATAAGTGAACTCGGACTCAACTAACAACGAGTTCGGACATTCGCACT
Found at i:23746585 original size:22 final size:22
Alignment explanation
Indices: 23746560--23746603 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
23746550 AACCGACGAA
*
23746560 AAAACGTGTCAAAAGACAGACG
1 AAAACATGTCAAAAGACAGACG
23746582 AAAACATGTCAAAAGACAGACG
1 AAAACATGTCAAAAGACAGACG
23746604 GATCATAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.52, C:0.18, G:0.20, T:0.09
Consensus pattern (22 bp):
AAAACATGTCAAAAGACAGACG
Found at i:23750301 original size:19 final size:19
Alignment explanation
Indices: 23750277--23750315 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
23750267 CTTAGTAAGT
23750277 TCGTATACTTAACTTACCA
1 TCGTATACTTAACTTACCA
23750296 TCGTATACTTAACTTACCA
1 TCGTATACTTAACTTACCA
23750315 T
1 T
23750316 TCATACTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.26, G:0.05, T:0.38
Consensus pattern (19 bp):
TCGTATACTTAACTTACCA
Found at i:23752959 original size:42 final size:40
Alignment explanation
Indices: 23752912--23753026 Score: 115
Period size: 41 Copynumber: 2.8 Consensus size: 40
23752902 CGCTAGTAAG
* *
23752912 AAAACGCCGCAAAAGATTAGAGC-TATAGCGGCGTTTATGACA
1 AAAACGCCGCAAAAGATCA-AGCAT-TAGAGGCGTTTATGA-A
* *
23752954 AAAACGCTGCAAAAGGTCAAGCATTAGAGGCGTTTATGAA
1 AAAACGCCGCAAAAGATCAAGCATTAGAGGCGTTTATGAA
* * * *
23752994 ACAAACGCCGCAATAGATCGAGAATTAGCGGCG
1 A-AAACGCCGCAAAAGATCAAGCATTAGAGGCG
23753027 CTTTTTAGAA
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
40 2 0.03
41 42 0.69
42 17 0.28
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (40 bp):
AAAACGCCGCAAAAGATCAAGCATTAGAGGCGTTTATGAA
Found at i:23753347 original size:7 final size:7
Alignment explanation
Indices: 23753331--23753367 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
23753321 TATTTTGTGA
23753331 TTAGAGT
1 TTAGAGT
*
23753338 TTAAAGT
1 TTAGAGT
*
23753345 TTAGGGT
1 TTAGAGT
23753352 TTAGAGT
1 TTAGAGT
23753359 TTAGAGT
1 TTAGAGT
23753366 TT
1 TT
23753368 GTGGTTTAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (7 bp):
TTAGAGT
Found at i:23753355 original size:21 final size:21
Alignment explanation
Indices: 23753331--23753382 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
23753321 TATTTTGTGA
23753331 TTAGAGTTTAAAGTTTAG-GGT
1 TTAGAGTTTAAAGTTT-GTGGT
*
23753352 TTAGAGTTTAGAGTTTGTGGT
1 TTAGAGTTTAAAGTTTGTGGT
*
23753373 TTAGGGTTTA
1 TTAGAGTTTA
23753383 TTATTTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 1 0.04
21 27 0.96
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (21 bp):
TTAGAGTTTAAAGTTTGTGGT
Found at i:23753561 original size:7 final size:7
Alignment explanation
Indices: 23753549--23753619 Score: 56
Period size: 7 Copynumber: 10.4 Consensus size: 7
23753539 AATATATATA
23753549 TTTAGGG
1 TTTAGGG
23753556 TTTAGGG
1 TTTAGGG
*
23753563 TATA-GG
1 TTTAGGG
*
23753569 TTTATGG
1 TTTAGGG
* * *
23753576 TCTAAGA
1 TTTAGGG
*
23753583 TTTAGTG
1 TTTAGGG
* *
23753590 TTTATGA
1 TTTAGGG
23753597 TTTAGGG
1 TTTAGGG
23753604 TTTAGGG
1 TTTAGGG
23753611 TTT-GGG
1 TTTAGGG
23753617 TTT
1 TTT
23753620 GATAGTTTAA
Statistics
Matches: 49, Mismatches: 14, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
6 11 0.22
7 38 0.78
ACGTcount: A:0.18, C:0.01, G:0.32, T:0.48
Consensus pattern (7 bp):
TTTAGGG
Found at i:23753902 original size:14 final size:15
Alignment explanation
Indices: 23753884--23753924 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
23753874 AGGGTTAAGG
23753884 GTTTAGTGTTTATAA
1 GTTTAGTGTTTATAA
*
23753899 -TTTAGGGTTTA-AA
1 GTTTAGTGTTTATAA
*
23753912 GTTTAGTATTTAT
1 GTTTAGTGTTTAT
23753925 GGGATAAGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
13 2 0.10
14 19 0.90
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.54
Consensus pattern (15 bp):
GTTTAGTGTTTATAA
Found at i:23753904 original size:28 final size:27
Alignment explanation
Indices: 23753865--23753924 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
23753855 ATAACATCAT
* *
23753865 TTTATATTTAGGG-TTAAGGGTTTAGTG
1 TTTATATTTAGGGTTTAA-AGTTTAGTA
23753892 TTTATAATTTAGGGTTTAAAGTTTAGTA
1 TTTAT-ATTTAGGGTTTAAAGTTTAGTA
23753920 TTTAT
1 TTTAT
23753925 GGGATAAGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 5 0.17
28 20 0.69
29 4 0.14
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.52
Consensus pattern (27 bp):
TTTATATTTAGGGTTTAAAGTTTAGTA
Found at i:23754449 original size:82 final size:82
Alignment explanation
Indices: 23754351--23754502 Score: 277
Period size: 82 Copynumber: 1.9 Consensus size: 82
23754341 GCTTTTTTAA
* *
23754351 AAAAAACACCGCTAATCCTCTAAATCTCCAATTAAAGCGACGCCATTTTCGTTAAACTATTATGT
1 AAAAAACACCGCTAATCCACTAAATCTCCAATTAAAACGACGCCATTTTCGTTAAACTATTATGT
23754416 TTTTTTCTGTGTTTTTT
66 TTTTTTCTGTGTTTTTT
*
23754433 AAAAAACGCCGCTAATCCACTAAATCTCCAATTAAAACGACGCCATTTTCGTTAAACTATTATGT
1 AAAAAACACCGCTAATCCACTAAATCTCCAATTAAAACGACGCCATTTTCGTTAAACTATTATGT
23754498 TTTTT
66 TTTTT
23754503 GTGGCGTTTC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 67 1.00
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (82 bp):
AAAAAACACCGCTAATCCACTAAATCTCCAATTAAAACGACGCCATTTTCGTTAAACTATTATGT
TTTTTTCTGTGTTTTTT
Found at i:23754517 original size:82 final size:82
Alignment explanation
Indices: 23754351--23754531 Score: 274
Period size: 82 Copynumber: 2.2 Consensus size: 82
23754341 GCTTTTTTAA
* * *
23754351 AAAAAACACCGCTAATCCTCTAAATCTCCAATTAAAGCGACGCCATTTTCGTTAAACTATTATGT
1 AAAAAACGCCGCTAATCCACTAAATCTCCAATTAAAACGACGCCATTTTCGTTAAACTATTATGT
* * *
23754416 TTTTTTCTGTGTTTTTT
66 TTTTTTCGGCGTTTCTT
23754433 AAAAAACGCCGCTAATCCACTAAATCTCCAATTAAAACGACGCCATTTTCGTTAAACTATTATGT
1 AAAAAACGCCGCTAATCCACTAAATCTCCAATTAAAACGACGCCATTTTCGTTAAACTATTATGT
23754498 TTTTTGT-GGCGTTTCTT
66 TTTTT-TCGGCGTTTCTT
* *
23754515 AAAAAATGCCACTAATC
1 AAAAAACGCCGCTAATC
23754532 TCTTAGTTTT
Statistics
Matches: 90, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
82 89 0.99
83 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.10, T:0.36
Consensus pattern (82 bp):
AAAAAACGCCGCTAATCCACTAAATCTCCAATTAAAACGACGCCATTTTCGTTAAACTATTATGT
TTTTTTCGGCGTTTCTT
Found at i:23755431 original size:21 final size:21
Alignment explanation
Indices: 23755405--23755446 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
23755395 GCGTTTTTTG
23755405 AAAAAACGCCGTAAAAAAACA
1 AAAAAACGCCGTAAAAAAACA
23755426 AAAAAACGCCGTAAAAAAACA
1 AAAAAACGCCGTAAAAAAACA
23755447 TAATTATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.67, C:0.19, G:0.10, T:0.05
Consensus pattern (21 bp):
AAAAAACGCCGTAAAAAAACA
Found at i:23756358 original size:70 final size:70
Alignment explanation
Indices: 23756245--23756384 Score: 244
Period size: 70 Copynumber: 2.0 Consensus size: 70
23756235 CTCATGCGTC
* * *
23756245 TAACATTATTATATAATAATATTAGTAGATATGTTGTAGGGGGTGTAATCGAATTCTCATTGAAA
1 TAACATTATTATATAATAATATTAATAGATATGCTGTAGGGGGTGTAATCGAATCCTCATTGAAA
23756310 ACTAA
66 ACTAA
*
23756315 TAACATTATTATATAATAATATTAATAGATATGCTGTAGGGGGTGTAATCTAATCCTCATTGAAA
1 TAACATTATTATATAATAATATTAATAGATATGCTGTAGGGGGTGTAATCGAATCCTCATTGAAA
23756380 ACTAA
66 ACTAA
23756385 CATCAAAAGA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 66 1.00
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (70 bp):
TAACATTATTATATAATAATATTAATAGATATGCTGTAGGGGGTGTAATCGAATCCTCATTGAAA
ACTAA
Found at i:23758828 original size:99 final size:99
Alignment explanation
Indices: 23758670--23759452 Score: 822
Period size: 99 Copynumber: 7.6 Consensus size: 99
23758660 TATTTTCAAT
* *
23758670 TTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTACTTGAATCACG
1 TTACATAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTATTTGAATCACG
23758735 AAAATTAATTTCAATATTTTATTTTATTTTAACA
66 AAAATTAATTTCAATATTTTATTTTATTTTAACA
* * *
23758769 TTACATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTGAATCACG
1 TTACATAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTATTTGAATCACG
23758834 AAAATTAATTTCAATATTTTATTTTATTTTAACA
66 AAAATTAATTTCAATATTTTATTTTATTTTAACA
* * *
23758868 TTACATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAA
1 TTACATAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTA---T-TTT-A---T--
* * *** * *
23758933 TTTAATCACGAAAAAT-ATTTTGTTTTCTTTAATTTTATTTTCAA-T
56 TTGAATCACGAAAATTAATTTCAATAT-TTT-ATTTTATTTT-AACA
*
23758978 TTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTATTTCACTTTAA
1 TTACATAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTA---T-TTT-A---T--
* * *** * *
23759043 TTTAATCACGAAAAAT-ATTTTGTTTTCTTTAATTTTATTTTCAA-T
56 TTGAATCACGAAAATTAATTTCAATAT-TTT-ATTTTATTTT-AACA
*
23759088 TTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTATTTGAATCACG
1 TTACATAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTATTTGAATCACG
23759153 AAAATTAATTTCAATATTTTATTTTATTTTAACA
66 AAAATTAATTTCAATATTTTATTTTATTTTAACA
* * * * *
23759187 TTACATAATTAAATTAAGTTGTACTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAA
1 TTACATAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTA---T-TTT-A-TTTGA
* *** * *
23759252 TTTGATCACGAAAAAT-ATTTTGTTTTCTTTAATTTTATTTTTAA-T
60 ----ATCACGAAAATTAATTTCAATAT-TTT-ATTTTA-TTTTAACA
*
23759297 TTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTATTTGAATCACG
1 TTACATAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTATTTGAATCACG
23759362 AAAATTAATTTCAATATTTTATTTTATTTTAACA
66 AAAATTAATTTCAATATTTTATTTTATTTTAACA
* * *
23759396 TTACATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTT
1 TTACATAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTATTT
23759453 CACTTTAATT
Statistics
Matches: 603, Mismatches: 51, Indels: 60
0.84 0.07 0.08
Matches are distributed among these distances:
98 8 0.01
99 256 0.42
100 31 0.05
101 12 0.02
102 3 0.00
103 6 0.01
104 6 0.01
105 6 0.01
106 6 0.01
107 3 0.00
108 12 0.02
109 31 0.05
110 215 0.36
111 8 0.01
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.54
Consensus pattern (99 bp):
TTACATAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTATTTGAATCACG
AAAATTAATTTCAATATTTTATTTTATTTTAACA
Found at i:23758971 original size:48 final size:48
Alignment explanation
Indices: 23758916--23759082 Score: 115
Period size: 48 Copynumber: 3.2 Consensus size: 48
23758906 TAAATATTTT
23758916 ATTTTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
1 ATTTTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
* ** * *
23758964 ATTTTATTTTCAATTT-ACCTAATTA--AATTAAATTATATTTAAAGTTTCATTTTAAATA
1 ATTTTA-TTTCACTTTAATTTAATCACGAA--AAA-TAT-TTT---GTTT--TCTT---TA
23759022 TTTTATTTTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
1 ----ATTTTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
23759074 ATTTTATTT
1 ATTTTATTT
23759083 TCAATTTACC
Statistics
Matches: 89, Mismatches: 10, Indels: 40
0.64 0.07 0.29
Matches are distributed among these distances:
46 2 0.02
48 24 0.27
49 11 0.12
50 3 0.03
52 2 0.02
53 4 0.04
55 6 0.07
57 4 0.04
58 2 0.02
60 3 0.03
61 11 0.12
62 15 0.17
64 2 0.02
ACGTcount: A:0.33, C:0.08, G:0.03, T:0.56
Consensus pattern (48 bp):
ATTTTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
Found at i:23758987 original size:53 final size:53
Alignment explanation
Indices: 23758930--23759097 Score: 166
Period size: 53 Copynumber: 3.1 Consensus size: 53
23758920 TATTTCACTT
23758930 TAATTTAATCACGAAAAATATTTTGTTTTCTTTAATTTTATTTTCAATTTACC
1 TAATTTAATCACGAAAAATATTTTGTTTTCTTTAATTTTATTTTCAATTTACC
* * ** * *
23758983 TAATTAAATTA--AATTATATTTAAAG-TTTCATTTTAAATATTTTATTTT--ATTTCACTT
1 TAATTTAATCACGAAAAATATTT--TGTTTTC--TTT--A-ATTTTATTTTCAATTT-AC-C
23759040 TAATTTAATCACGAAAAATATTTTGTTTTCTTTAATTTTATTTTCAATTTACC
1 TAATTTAATCACGAAAAATATTTTGTTTTCTTTAATTTTATTTTCAATTTACC
23759093 TAATT
1 TAATT
23759098 AAATTAAATT
Statistics
Matches: 89, Mismatches: 12, Indels: 28
0.69 0.09 0.22
Matches are distributed among these distances:
51 8 0.09
52 4 0.04
53 25 0.28
54 6 0.07
55 8 0.09
56 6 0.07
57 20 0.22
58 4 0.04
59 8 0.09
ACGTcount: A:0.34, C:0.09, G:0.03, T:0.54
Consensus pattern (53 bp):
TAATTTAATCACGAAAAATATTTTGTTTTCTTTAATTTTATTTTCAATTTACC
Found at i:23758988 original size:110 final size:109
Alignment explanation
Indices: 23758854--23759531 Score: 837
Period size: 110 Copynumber: 6.4 Consensus size: 109
23758844 TCAATATTTT
* * *
23758854 ATTTTATTTTAACATTACATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATT
1 ATTTTATTTTAA-TTTACCTAATTAAATTAAGTTGTATTTAAAGTTTCATTTTAAATATTTTATT
23758919 TTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
65 TTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
* *
23758964 ATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATT
1 ATTTTATTTT-AATTTACCTAATTAAATTAAGTTGTATTTAAAGTTTCATTTTAAATATTTTATT
23759029 TTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
65 TTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
* *
23759074 ATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTA--
1 ATTTTATTTT-AATTTACCTAATTAAATTAAGTTGTATTTAAAGTTTCATTTTAAATATTTTATT
* * *** *
23759137 -T-TTT-A---T--TTGAATCACGAAAATTAATTTCAATAT-TTT-
65 TTATTTCACTTTAATTTAATCACGAAAAAT-ATTTTGTTTTCTTTA
* * * *
23759173 ATTTTATTTTAACATTACATAATTAAATTAAGTTGTACTTAAAGTTTTATTTTAAATATTTTATT
1 ATTTTATTTTAA-TTTACCTAATTAAATTAAGTTGTATTTAAAGTTTCATTTTAAATATTTTATT
*
23759238 TTATTTCACTTTAATTTGATCACGAAAAATATTTTGTTTTCTTTA
65 TTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
* *
23759283 ATTTTATTTTTAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTA--
1 ATTTTA-TTTTAATTTACCTAATTAAATTAAGTTGTATTTAAAGTTTCATTTTAAATATTTTATT
* * *** *
23759346 -T-TTT-A---T--TTGAATCACGAAAATTAATTTCAATAT-TTT-
65 TTATTTCACTTTAATTTAATCACGAAAAAT-ATTTTGTTTTCTTTA
* * *
23759382 ATTTTATTTTAACATTACATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATT
1 ATTTTATTTTAA-TTTACCTAATTAAATTAAGTTGTATTTAAAGTTTCATTTTAAATATTTTATT
*
23759447 TTATTTCACTTTAATTTAATCATGAAAAATATTTTGTTTTCTTTA
65 TTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
23759492 ATTTTATTTTCAATTTACCTAATTAAATTAAGTTGTATTT
1 ATTTTATTTT-AATTTACCTAATTAAATTAAGTTGTATTT
23759532 TTAAGTTCAC
Statistics
Matches: 486, Mismatches: 51, Indels: 62
0.81 0.09 0.10
Matches are distributed among these distances:
98 8 0.02
99 105 0.22
100 33 0.07
101 12 0.02
102 4 0.01
103 6 0.01
104 2 0.00
105 2 0.00
106 6 0.01
107 4 0.01
108 12 0.02
109 32 0.07
110 250 0.51
111 10 0.02
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (109 bp):
ATTTTATTTTAATTTACCTAATTAAATTAAGTTGTATTTAAAGTTTCATTTTAAATATTTTATTT
TATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
Found at i:23759135 original size:52 final size:52
Alignment explanation
Indices: 23758968--23759135 Score: 139
Period size: 53 Copynumber: 3.1 Consensus size: 52
23758958 TCTTTAATTT
23758968 TATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAA
1 TATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAA
* * * ** * *
23759020 TATTTT-ATTTTATTTCACTTTAATTTAATCACGAAAAATATTT--TGTTT--TCTTTAATTT
1 TATTTTCA----ATTT-AC-CTAATTAAATTA--AATTATATTTAAAGTTTCAT-TTTAA--A
23759078 TATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAA
1 TATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAA
23759130 TATTTT
1 TATTTT
23759136 ATTTTATTTG
Statistics
Matches: 86, Mismatches: 14, Indels: 32
0.65 0.11 0.24
Matches are distributed among these distances:
51 9 0.10
52 12 0.14
53 13 0.15
54 7 0.08
55 10 0.12
56 7 0.08
57 13 0.15
58 6 0.07
59 9 0.10
ACGTcount: A:0.36, C:0.08, G:0.02, T:0.54
Consensus pattern (52 bp):
TATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAA
Found at i:23759179 original size:209 final size:209
Alignment explanation
Indices: 23758643--23759531 Score: 1268
Period size: 209 Copynumber: 4.3 Consensus size: 209
23758633 ATGGCATACA
*
23758643 TTTGTTTTCTTTAATTATATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
*
23758708 TAAATATTTTATTTTACTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
66 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
*
23758773 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTA---T-TTT-A---T--TTGA
131 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTA
*
23758828 ATCACGAAAATTAAT
196 ATCACGAAAAAT-AT
*** * * * * * *
23758843 TTCAATAT-TTT-ATTTTATTTT-AACATTACATAATTAAATTAAGTTGTATTTAAAGTTTTATT
1 TTTGTTTTCTTTAATTTTATTTTCAA-TTTACCTAATTAAATTAAATTATATTTAAAGTTTCATT
* * *** *
23758905 TTAAATATTTTATTTTATTTCACTTTAATTTAATCACGAAAAAT-ATTTTGTTTTCTTTAATTTT
65 TTAAATATTTTA---T-TTT-A---T--TTGAATCACGAAAATTAATTTCAATAT-TTT-ATTTT
* * * * *
23758969 ATTTTCAA-TTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTAT
118 ATTTT-AACATTACATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTAT
23759033 TTCACTTTAATTTAATCACGAAAAATAT
182 TTCACTTTAATTTAATCACGAAAAATAT
23759061 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
23759126 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
66 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
* *
23759191 ATAATTAAATTAAGTTGTACTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTG
131 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTA
23759256 ATCACGAAAAATAT
196 ATCACGAAAAATAT
*
23759270 TTTGTTTTCTTTAATTTTATTTTTAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
23759335 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
66 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
23759400 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTA
131 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTA
*
23759465 ATCATGAAAAATAT
196 ATCACGAAAAATAT
* *
23759479 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAGTTGTATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTT
23759532 TTAAGTTCAC
Statistics
Matches: 607, Mismatches: 53, Indels: 49
0.86 0.07 0.07
Matches are distributed among these distances:
197 2 0.00
198 54 0.09
199 3 0.00
200 4 0.01
201 1 0.00
202 3 0.00
203 1 0.00
207 6 0.01
208 19 0.03
209 397 0.65
210 19 0.03
211 6 0.01
212 2 0.00
213 3 0.00
214 1 0.00
215 1 0.00
216 3 0.00
217 2 0.00
218 6 0.01
219 17 0.03
220 55 0.09
221 2 0.00
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (209 bp):
TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTA
ATCACGAAAAATAT
Found at i:23759528 original size:319 final size:308
Alignment explanation
Indices: 23758643--23759452 Score: 1345
Period size: 319 Copynumber: 2.6 Consensus size: 308
23758633 ATGGCATACA
*
23758643 TTTGTTTTCTTTAATTATATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
*
23758708 TAAATATTTTATTTTACTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
66 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
23758773 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTGAATCACGAAAA
131 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTGAATCACGAAAA
*
23758838 TTAATTTCAATATTTTATTTTATTTTAACATTACATAATTAAATTAAGTTGTATTTAAAGTTTTA
196 TTAATTTCAATATTTTATTTTATTTTAACATTACATAATTAAATTAAGTTGTACTTAAAGTTTTA
23758903 TTTTAAATATTTTATTTTATTTCACTTTAATTTAATCACGAAAAATAT
261 TTTTAAATATTTTATTTTATTTCACTTTAATTTAATCACGAAAAATAT
23758951 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
* * *** *
23759016 TAAATATTTTATTTTATTTCACTTTAATTTAATCACGAAAAAT-ATTTTGTTTTCTTTAATTTTA
66 TAAATATTTTA---T-TTT-A---T--TTGAATCACGAAAATTAATTTCAATAT-TTT-ATTTTA
* * * * *
23759080 TTTTCAA-TTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTATT
119 TTTT-AACATTACATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATT
23759144 TGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTACATAATTAAATTAAGTTGT
183 TGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTACATAATTAAATTAAGTTGT
*
23759209 ACTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTGATCACGAAAAATAT
248 ACTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTAATCACGAAAAATAT
*
23759270 TTTGTTTTCTTTAATTTTATTTTTAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
23759335 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
66 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
23759400 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTT
131 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTT
23759453 CACTTTAATT
Statistics
Matches: 460, Mismatches: 27, Indels: 30
0.89 0.05 0.06
Matches are distributed among these distances:
307 2 0.00
308 138 0.30
309 17 0.04
310 6 0.01
311 2 0.00
312 3 0.01
313 1 0.00
314 1 0.00
315 3 0.01
316 1 0.00
317 6 0.01
318 17 0.04
319 261 0.57
320 2 0.00
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.54
Consensus pattern (308 bp):
TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTGAATCACGAAAA
TTAATTTCAATATTTTATTTTATTTTAACATTACATAATTAAATTAAGTTGTACTTAAAGTTTTA
TTTTAAATATTTTATTTTATTTCACTTTAATTTAATCACGAAAAATAT
Found at i:23759580 original size:16 final size:16
Alignment explanation
Indices: 23759559--23759846 Score: 143
Period size: 16 Copynumber: 18.0 Consensus size: 16
23759549 TCACATAATT
*
23759559 TACATAATTTACATAA
1 TACATAACTTACATAA
23759575 TACATAACTTACATAA
1 TACATAACTTACATAA
** *
23759591 TTTA-AAGTT-CA-AA
1 TACATAACTTACATAA
*
23759604 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
* *
23759621 TTTAAAAAACTTACATAA
1 --TACATAACTTACATAA
*
23759639 TACATAACTAACATAA
1 TACATAACTTACATAA
** *
23759655 TTTA-AAGTT-CA-AA
1 TACATAACTTACATAA
*
23759668 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
*
23759685 TACATAACTAACATAA
1 TACATAACTTACATAA
** **
23759701 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
*
23759714 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
*
23759731 TTTACATAACTTACGTAA
1 --TACATAACTTACATAA
23759749 TACATAACTTACATAA
1 TACATAACTTACATAA
**
23759765 TTTA-AAGC-T-CA-AA
1 TACATAA-CTTACATAA
*
23759778 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
23759795 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
* * *
23759813 TACATAAATATATATCA
1 TACATAACT-TACATAA
23759830 TATCATAACTTACATAA
1 TA-CATAACTTACATAA
23759847 CTTAATTATA
Statistics
Matches: 208, Mismatches: 41, Indels: 45
0.71 0.14 0.15
Matches are distributed among these distances:
13 8 0.04
14 21 0.10
15 26 0.12
16 82 0.39
17 20 0.10
18 51 0.25
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.35
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:23759613 original size:30 final size:30
Alignment explanation
Indices: 23759577--23759685 Score: 139
Period size: 30 Copynumber: 3.5 Consensus size: 30
23759567 TTACATAATA
23759577 CATAACTTACATAATTTAAAGTTCAAATTT
1 CATAACTTACATAATTTAAAGTTCAAATTT
* *
23759607 CATAACTTACATAATTTAAAAAACTTACATAA-TA
1 CATAACTTACATAATTT---AAAGTT-CA-AATTT
*
23759641 CATAACTAACATAATTTAAAGTTCAAATTT
1 CATAACTTACATAATTTAAAGTTCAAATTT
23759671 CATAACTTACATAAT
1 CATAACTTACATAAT
23759686 ACATAACTAA
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
29 2 0.03
30 34 0.51
31 5 0.07
33 5 0.07
34 19 0.28
35 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.36
Consensus pattern (30 bp):
CATAACTTACATAATTTAAAGTTCAAATTT
Found at i:23759622 original size:64 final size:64
Alignment explanation
Indices: 23759546--23759701 Score: 244
Period size: 64 Copynumber: 2.5 Consensus size: 64
23759536 GTTCACCAGC
* * *
23759546 AACTCACATAATTTACATAATTTACATAATACATAACTTACATAATTTAAAGTTCAAATTTCAT
1 AACTTACATAATTTACATAACTTACATAATACATAACTAACATAATTTAAAGTTCAAATTTCAT
* *
23759610 AACTTACATAATTTAAAAAACTTACATAATACATAACTAACATAATTTAAAGTTCAAATTTCAT
1 AACTTACATAATTTACATAACTTACATAATACATAACTAACATAATTTAAAGTTCAAATTTCAT
*
23759674 AACTTACATAA--TACATAACTAACATAAT
1 AACTTACATAATTTACATAACTTACATAAT
23759702 TTAAAGATCA
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
62 14 0.17
64 70 0.83
ACGTcount: A:0.49, C:0.15, G:0.01, T:0.35
Consensus pattern (64 bp):
AACTTACATAATTTACATAACTTACATAATACATAACTAACATAATTTAAAGTTCAAATTTCAT
Found at i:23759685 original size:46 final size:46
Alignment explanation
Indices: 23759628--23759741 Score: 201
Period size: 46 Copynumber: 2.4 Consensus size: 46
23759618 TAATTTAAAA
*
23759628 AACTTACATAATACATAACTAACATAATTTAAAGTTCAAATTTCAT
1 AACTTACATAATACATAACTAACATAATTTAAAGATCAAATTTCAT
23759674 AACTTACATAATACATAACTAACATAATTTAAAGATCAAATTTCAT
1 AACTTACATAATACATAACTAACATAATTTAAAGATCAAATTTCAT
23759720 AACTTACATAATTTACATAACT
1 AACTTACATAA--TACATAACT
23759742 TACGTAATAC
Statistics
Matches: 65, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
46 56 0.86
48 9 0.14
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (46 bp):
AACTTACATAATACATAACTAACATAATTTAAAGATCAAATTTCAT
Found at i:23759688 original size:110 final size:110
Alignment explanation
Indices: 23759555--23759813 Score: 419
Period size: 110 Copynumber: 2.3 Consensus size: 110
23759545 CAACTCACAT
* *
23759555 AATTTACATAATTTACATAATACATAACTTACATAATTTAAAGTTCAAATTTCATAACTTACATA
1 AATTT-CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTACATA
*
23759620 ATTTAAAAAACTTACATAATACATAACTAACATAATTTAAAGTTCA
65 ATTTAAAAAACTTACATAATACATAACTAACATAATTTAAAGCTCA
*
23759666 AATTTCATAACTTACATAATACATAACTAACATAATTTAAAGATCAAATTTCATAACTTACATAA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTACATAA
* * * *
23759731 TTTACATAACTTACGTAATACATAACTTACATAATTTAAAGCTCA
66 TTTAAAAAACTTACATAATACATAACTAACATAATTTAAAGCTCA
23759776 AATTTCATAACTTACATAATTTACATAACTTACATAAT
1 AATTTCATAACTTACATAA--TACATAACTTACATAAT
23759814 ACATAAATAT
Statistics
Matches: 137, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
110 116 0.85
111 5 0.04
112 16 0.12
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.36
Consensus pattern (110 bp):
AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTACATAA
TTTAAAAAACTTACATAATACATAACTAACATAATTTAAAGCTCA
Found at i:23759721 original size:30 final size:30
Alignment explanation
Indices: 23759687--23759798 Score: 120
Period size: 30 Copynumber: 3.6 Consensus size: 30
23759677 TTACATAATA
*
23759687 CATAACTAACATAATTTAAAGATCAAATTT
1 CATAACTTACATAATTTAAAGATCAAATTT
* *
23759717 CATAACTTACATAATTTACATA-ACTTACGTAA-TA
1 CATAACTTACATAATTTA-A-AGA--T-C-AAATTT
*
23759751 CATAACTTACATAATTTAAAGCTCAAATTT
1 CATAACTTACATAATTTAAAGATCAAATTT
23759781 CATAACTTACATAATTTA
1 CATAACTTACATAATTTA
23759799 CATAACTTAC
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
29 2 0.03
30 37 0.54
31 3 0.04
32 2 0.03
33 2 0.03
34 20 0.29
35 2 0.03
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.36
Consensus pattern (30 bp):
CATAACTTACATAATTTAAAGATCAAATTT
Found at i:23759739 original size:64 final size:64
Alignment explanation
Indices: 23759666--23759819 Score: 274
Period size: 64 Copynumber: 2.4 Consensus size: 64
23759656 TTAAAGTTCA
23759666 AATTT-CATAACTTACATAATACATAACTAACATAATTTAAAGATCAAATTTCATAACTTACAT
1 AATTTACATAACTTACATAATACATAACTAACATAATTTAAAGATCAAATTTCATAACTTACAT
* * *
23759729 AATTTACATAACTTACGTAATACATAACTTACATAATTTAAAGCTCAAATTTCATAACTTACAT
1 AATTTACATAACTTACATAATACATAACTAACATAATTTAAAGATCAAATTTCATAACTTACAT
23759793 AATTTACATAACTTACATAATACATAA
1 AATTTACATAACTTACATAATACATAA
23759820 ATATATATCA
Statistics
Matches: 86, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
63 5 0.06
64 81 0.94
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (64 bp):
AATTTACATAACTTACATAATACATAACTAACATAATTTAAAGATCAAATTTCATAACTTACAT
Found at i:23761460 original size:93 final size:93
Alignment explanation
Indices: 23761353--23761523 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
23761343 GCCCCTAAGT
* *
23761353 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23761418 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
23761446 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23761511 CGAGTTCGGATGC
66 CGAGTTCGGATGC
23761524 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:23761520 original size:46 final size:46
Alignment explanation
Indices: 23761348--23761520 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
23761338 AACCCGCCCC
* * *
23761348 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
23761394 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
23761442 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
23761487 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
23761521 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:23761977 original size:30 final size:30
Alignment explanation
Indices: 23761943--23762002 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
23761933 ATTTAATACG
23761943 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
23761973 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
23762003 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:23769027 original size:92 final size:92
Alignment explanation
Indices: 23768916--23769085 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
23768906 GCCCCTAAGT
* *
23768916 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23768981 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
23769008 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23769073 CGAGTTCGGATGC
66 CGAGTTCGGATGC
23769086 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:23769082 original size:46 final size:46
Alignment explanation
Indices: 23768911--23769082 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
23768901 AACCCGCCCC
* * *
23768911 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
23768957 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
* *
23769003 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
23769049 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
23769083 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 95 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:23769101 original size:46 final size:46
Alignment explanation
Indices: 23768913--23769101 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
23768903 CCCGCCCCTA
* ** * *
23768913 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
23768958 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
23769006 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
23769051 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
23769097 AGTGA
1 AGTGA
23769102 CATGTCACTT
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 95 0.82
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:23769539 original size:30 final size:30
Alignment explanation
Indices: 23769505--23769564 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
23769495 ATTTAATACG
23769505 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
23769535 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
23769565 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:23770624 original size:6 final size:6
Alignment explanation
Indices: 23770597--23770674 Score: 75
Period size: 6 Copynumber: 12.5 Consensus size: 6
23770587 ATCCTCCTAT
* * *
23770597 TTTTTA TTATTTA CTCTTA TTTTTA TTTTTTTA TTTTTA TTTTGA TTTTTA
1 TTTTTA TT-TTTA TTTTTA TTTTTA --TTTTTA TTTTTA TTTTTA TTTTTA
* * *
23770648 TTTTGA TTTTGA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTT
23770675 CAATTTTATT
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
6 49 0.82
7 5 0.08
8 6 0.10
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.76
Consensus pattern (6 bp):
TTTTTA
Found at i:23770629 original size:20 final size:20
Alignment explanation
Indices: 23770597--23770646 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
23770587 ATCCTCCTAT
*
23770597 TTTTTA-TTATTTACTCTTA
1 TTTTTATTTTTTTACTCTTA
* *
23770616 TTTTTATTTTTTTATTTTTA
1 TTTTTATTTTTTTACTCTTA
*
23770636 TTTTGATTTTT
1 TTTTTATTTTT
23770647 ATTTTGATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 6 0.23
20 20 0.77
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (20 bp):
TTTTTATTTTTTTACTCTTA
Found at i:23770635 original size:26 final size:27
Alignment explanation
Indices: 23770596--23770651 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
23770586 AATCCTCCTA
23770596 TTTTTTATTATTTACTCTT-ATTTTTAT
1 TTTTTTATTATTTA-TCTTGATTTTTAT
*
23770623 TTTTTTATT-TTTATTTTGATTTTTAT
1 TTTTTTATTATTTATCTTGATTTTTAT
23770649 TTT
1 TTT
23770652 GATTTTGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 3 0.11
26 15 0.56
27 9 0.33
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.79
Consensus pattern (27 bp):
TTTTTTATTATTTATCTTGATTTTTAT
Found at i:23770681 original size:18 final size:18
Alignment explanation
Indices: 23770624--23770674 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
23770614 TATTTTTATT
*
23770624 TTTTTATTTTTATTTTGA
1 TTTTTATTTTCATTTTGA
*
23770642 TTTTTATTTTGATTTTGA
1 TTTTTATTTTCATTTTGA
23770660 TTTTTATTTTCATTT
1 TTTTTATTTTCATTT
23770675 CAATTTTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.16, C:0.02, G:0.06, T:0.76
Consensus pattern (18 bp):
TTTTTATTTTCATTTTGA
Found at i:23790719 original size:43 final size:43
Alignment explanation
Indices: 23790562--23790722 Score: 132
Period size: 43 Copynumber: 3.8 Consensus size: 43
23790552 TTTAATTAGT
* * * * * *
23790562 ATCGATGCCACTGTTCCAGACAAGGTCTTACATG-AA-ATCAA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCTA
* * *
23790603 ATACGATGTCGATGTCCCAGACATGGTCTTACATGTAATCTCTA
1 AT-CGATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCTA
* * * *
23790647 ATCGATGCCAGTGTCCCAGGCACGATCTTACACG-ATATCTC-A
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGTA-ATCTCTA
* *
23790689 AGTTGATGCCAATGTCCCAGACGTGGTCTTACAC
1 A-TCGATGCCAATGTCCCAGACATGGTCTTACAC
23790723 AAAATCATAT
Statistics
Matches: 95, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
41 2 0.02
42 30 0.32
43 58 0.61
44 5 0.05
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (43 bp):
ATCGATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCTA
Found at i:23799244 original size:27 final size:27
Alignment explanation
Indices: 23799214--23799275 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
23799204 AGGCCCAATT
* *
23799214 TGTAAAATTATTGAAATACACTTGTAG
1 TGTAAAATTATCGAAATACACTTATAG
*
23799241 TGTAAAATTATCGAAATACCCTTATAG
1 TGTAAAATTATCGAAATACACTTATAG
23799268 TGTAAAAT
1 TGTAAAAT
23799276 AACCGGCATA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACACTTATAG
Found at i:23799286 original size:27 final size:27
Alignment explanation
Indices: 23799226--23799302 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 27
23799216 TAAAATTATT
* * *
23799226 GAAATACACTTGTAGTGTAAAATTATC
1 GAAATACCCTTGTAGTGTAAAATAACC
*
23799253 GAAATACCCTTATAGTGTAAAATAACC
1 GAAATACCCTTGTAGTGTAAAATAACC
** * *
23799280 GGCATACCCCTGTAGGGTAAAAT
1 GAAATACCCTTGTAGTGTAAAAT
23799303 GATTGTTTTG
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (27 bp):
GAAATACCCTTGTAGTGTAAAATAACC
Found at i:23799584 original size:41 final size:41
Alignment explanation
Indices: 23799539--23799700 Score: 243
Period size: 41 Copynumber: 4.0 Consensus size: 41
23799529 AGGAAGTATA
*
23799539 TGAGGATCGCATGGTTGCTTCACGACCATGGATCCACCGAT
1 TGAGGATCGCATGGTTGCTTGACGACCATGGATCCACCGAT
* * *
23799580 TGAGGATCACATGGTTGCTTGACTACCATAGATCCACCGAT
1 TGAGGATCGCATGGTTGCTTGACGACCATGGATCCACCGAT
* *
23799621 TGAGAATCGCATGGTTGCTTGACGACCATGGATCCATCGAT
1 TGAGGATCGCATGGTTGCTTGACGACCATGGATCCACCGAT
* * *
23799662 TAAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
1 TGAGGATCGCATGGTTGCTTGACGACCATGGATCCACCG
23799701 GTGACTTTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 107 1.00
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (41 bp):
TGAGGATCGCATGGTTGCTTGACGACCATGGATCCACCGAT
Found at i:23799880 original size:22 final size:22
Alignment explanation
Indices: 23799848--23799906 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
23799838 TATTGTGATC
*
23799848 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
23799870 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
23799892 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
23799907 ACATATTTTC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:23801583 original size:40 final size:40
Alignment explanation
Indices: 23801528--23801707 Score: 274
Period size: 40 Copynumber: 4.5 Consensus size: 40
23801518 TGGCTCCTAC
* *
23801528 TGCCTTTGAGACTTAGCCCGGATATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
* *
23801568 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
23801608 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
* * *
23801648 TGCCTTCGGG-CTTAGCCC-GAAATTAGTCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAA
23801687 TGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGACTTAGCCCGG
23801708 TTATCATCCG
Statistics
Matches: 128, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
38 3 0.02
39 32 0.25
40 92 0.72
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
Found at i:23807255 original size:46 final size:46
Alignment explanation
Indices: 23807159--23807281 Score: 140
Period size: 46 Copynumber: 2.6 Consensus size: 46
23807149 TTGTTTCGTA
* ** * * * *
23807159 GCCGAAGCATGTCTTAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCCTACATCTCAAG
*
23807205 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACT-CATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-CTACATCTCAAG
23807251 GCCGATGCCATGTCCCAGACATGGTCTTACA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACA
23807282 ATGACTTACA
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 43 0.65
47 15 0.23
48 8 0.12
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCCTACATCTCAAG
Found at i:23812811 original size:47 final size:48
Alignment explanation
Indices: 23812754--23812955 Score: 179
Period size: 46 Copynumber: 4.3 Consensus size: 48
23812744 TCCTAGATAC
** *
23812754 GGTCTTACACTGGCTCAT-ATCTC-AAGTTGAGGCCATGTCCCAGACAT
1 GGTCTTACACTGGCTCATCATCTCGAAGCCGATG-CATGTCCCAGACAT
* * * * * *
23812801 GGTCTTACACTGACT-ATCATTTCGTAGCTGACGCATGTCCTAGACAT
1 GGTCTTACACTGGCTCATCATCTCGAAGCCGATGCATGTCCCAGACAT
* * *
23812848 -GTCTTACACTGGCTTA-CGTCTCGAGGCCGATGCATGTCCCAGACAT
1 GGTCTTACACTGGCTCATCATCTCGAAGCCGATGCATGTCCCAGACAT
* *
23812894 -GTCTTACACTAGCAC-TCATCTC-AATGTCC-ATGCCATGTCCCAGACAT
1 GGTCTTACACTGGCTCATCATCTCGAA-G-CCGATG-CATGTCCCAGACAT
23812941 GGTCTTACACTGGCT
1 GGTCTTACACTGGCT
23812956 TACACAAGTG
Statistics
Matches: 126, Mismatches: 21, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 59 0.47
47 48 0.38
48 18 0.14
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (48 bp):
GGTCTTACACTGGCTCATCATCTCGAAGCCGATGCATGTCCCAGACAT
Found at i:23814884 original size:2 final size:2
Alignment explanation
Indices: 23814879--23814917 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
23814869 TATATATATA
*
23814879 TG TG TG TG TG TG TG TG TG TG TG TG TC TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
23814918 AACATGAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.03, G:0.46, T:0.51
Consensus pattern (2 bp):
TG
Found at i:23818505 original size:41 final size:43
Alignment explanation
Indices: 23818459--23818567 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 43
23818449 ACCGGCACGA
* * *
23818459 AGCCTGCTAGACTTTAAGTCTGA-ACTCA-TTCACCGGCATT-T
1 AGCCTGCTAGACTTGAAGCCCGATA-TCATTTCACCGGCATTAT
* *
23818500 CGCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGCATTAT
1 AGCCTGCTAGACTTGAAGCCCGATATCATTTCACCGGCATTAT
* **
23818543 AGCCTGCTAGGCCCGAAGCCCGATA
1 AGCCTGCTAGACTTGAAGCCCGATA
23818568 ATATTATTCA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
41 21 0.37
42 13 0.23
43 23 0.40
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (43 bp):
AGCCTGCTAGACTTGAAGCCCGATATCATTTCACCGGCATTAT
Found at i:23818561 original size:43 final size:42
Alignment explanation
Indices: 23818487--23818567 Score: 126
Period size: 43 Copynumber: 1.9 Consensus size: 42
23818477 TCTGAACTCA
* **
23818487 TTCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCAT
23818529 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCATT-TAGCCTGCTAGGCCCGAAGCCCGATA
23818568 ATATTATTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
42 12 0.34
43 23 0.66
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.25
Consensus pattern (42 bp):
TTCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:23825662 original size:27 final size:27
Alignment explanation
Indices: 23825632--23826079 Score: 312
Period size: 27 Copynumber: 16.6 Consensus size: 27
23825622 TTAGTTTACC
23825632 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
23825659 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
23825686 AAATCACCAAAATACCCC-AGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
23825712 AAATTACCAAAATACACTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
23825739 AAATTACGAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
23825766 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
23825793 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
23825820 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** ***
23825847 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*** **
23825874 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
** * * * **
23825901 AAATTACTTAAGTACCCTTGATTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *** * **
23825928 GAATAACCATTTTA-CCCTCGATTTACA
1 AAATTACCAAAATACCCCT-GGTTTGTA
** * * **
23825955 AAATTACTGAAATACCCTTGGCTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * ***
23825982 AAATTACCAAAATA-CCATCGATCAATA
1 AAATTACCAAAATACCCCT-GGTTTGTA
23826009 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
23826036 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
23826063 AAATTATCGAAATACCC
1 AAATTACCAAAATACCC
23826080 TTGTAAGGTA
Statistics
Matches: 335, Mismatches: 79, Indels: 14
0.78 0.18 0.03
Matches are distributed among these distances:
26 31 0.09
27 295 0.88
28 9 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:23826094 original size:27 final size:27
Alignment explanation
Indices: 23826064--23826338 Score: 347
Period size: 27 Copynumber: 10.3 Consensus size: 27
23826054 TGATTTGTGA
* * *
23826064 AATTATCGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
23826091 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
23826118 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
23826145 AATTATCGGAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
23826172 AATTACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
23826199 AATTACCGGAATACCTCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
23826226 AATTACTGAATTA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
23826252 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
23826279 AATTACCAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
23826306 AATTATCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
23826332 AATTACC
1 AATTACC
23826339 ATTTTGCCCC
Statistics
Matches: 214, Mismatches: 33, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
26 37 0.17
27 177 0.83
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:23826095 original size:54 final size:54
Alignment explanation
Indices: 23826010--23826310 Score: 286
Period size: 54 Copynumber: 5.6 Consensus size: 54
23826000 CGATCAATAA
* ** * **
23826010 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTG-ATTTGT-G
1 AATTACCGAAATACCCCT-GTAAGGTAGAATTACCAAAATACCCCTGTA-GGGTAG
* * ** *
23826063 AAATTATCGAAATACCCTTGTAAGGTAGAATTACTGAAATACCCTTGTAGGGTAG
1 -AATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* * ** *
23826118 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGGAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* * ** * *
23826172 AATTACCGAAATACCCCTGTAGGGTAAAATTACCGGAATACCTCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* * * *
23826226 AATTACTGAATTA-CCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* * *
23826279 AATTACCAAAATACCCCTGTAGGGTGGAATTA
1 AATTACCGAAATACCCCTGTAAGGTAGAATTA
23826311 TCGAGATACC
Statistics
Matches: 209, Mismatches: 34, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
53 48 0.23
54 159 0.76
55 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27
Consensus pattern (54 bp):
AATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAGGGTAG
Found at i:23826095 original size:81 final size:80
Alignment explanation
Indices: 23826010--23826338 Score: 355
Period size: 81 Copynumber: 4.1 Consensus size: 80
23826000 CGATCAATAA
* ** *
23826010 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTGATT-TGT-GAAATTATCG
1 AATTACCGAAATACCCCT-GTAGGGTAAAATTACCAAAATACCCCTG-TTAGGTAG-AATTATCG
*
23826072 AAATACCCTTGTAAGGTAG
63 AAATACCC-TGTAGGGTAG
* * * * *
23826091 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG-TAGGGTAGAATTATCGGA
1 AATTACCGAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTTA-GGTAGAATTATCGAA
23826155 ATACTCCTGTAGGGTAG
65 ATAC-CCTGTAGGGTAG
** * *
23826172 AATTACCGAAATACCCCTGTAGGGTAAAATTACCGGAATACCTCTGTAAGGTAGAATTA-CTGAA
1 AATTACCGAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTTAGGTAGAATTATC-GAA
*
23826236 TTACCCTGTAGGGTAG
65 ATACCCTGTAGGGTAG
* * *
23826252 AATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTG-TAGGGTGGAATTATCGAG
1 AATTACCGAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTTA-GGTAGAATTATCGAA
* * *
23826316 ATACCTTGTGGGGTAA
65 ATACCCTGTAGGGTAG
23826332 AATTACC
1 AATTACC
23826339 ATTTTGCCCC
Statistics
Matches: 210, Mismatches: 29, Indels: 19
0.81 0.11 0.07
Matches are distributed among these distances:
79 2 0.01
80 87 0.41
81 117 0.56
82 4 0.02
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (80 bp):
AATTACCGAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTTAGGTAGAATTATCGAAA
TACCCTGTAGGGTAG
Found at i:23826310 original size:107 final size:108
Alignment explanation
Indices: 23826072--23826338 Score: 342
Period size: 107 Copynumber: 2.5 Consensus size: 108
23826062 GAAATTATCG
* * * *
23826072 AAATACCCTTGTAAGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTG
* * * *
23826137 TAGGGTAGAATTATCGGAATACTCCTGTAGGGTAGAATTACCG
66 TAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCA
* * * *
23826180 AAATACCCCTGTAGGGTAAAATTACCGGAATA-CCTCTGTAAGGTAGAATTACTGAATTA-CCCT
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCT-TGTAAGGTAGAATTACCGAAATACCCCT
23826243 GTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCA
65 GTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCA
* * * ** *
23826287 AAATACCCCTGTAGGGTGGAATTATCGAGATA-CCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAAGGTAGAATTACC
23826339 ATTTTGCCCC
Statistics
Matches: 137, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
106 13 0.09
107 77 0.56
108 47 0.34
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.26
Consensus pattern (108 bp):
AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTG
TAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCA
Found at i:23826349 original size:80 final size:80
Alignment explanation
Indices: 23826064--23826338 Score: 367
Period size: 80 Copynumber: 3.4 Consensus size: 80
23826054 TGATTTGTGA
* * * *
23826064 AATTATCGAAATACCCTTGTAAGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAA
1 AATTATCGAGATACCC-TGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
23826129 TACCCCTGTAGGGTAG
65 TACCCCTGTAGGGTAG
* *
23826145 AATTATCG-GAATACTCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAAAATTACCGGA
1 AATTATCGAG-ATAC-CCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAA
* *
23826209 ATACCTCTGTAAGGTAG
64 ATACCCCTGTAGGGTAG
*
23826226 AATTA-CTGA-ATTACCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCAAA
1 AATTATC-GAGA-TACCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAA
*
23826289 ATACCCCTGTAGGGTGG
64 ATACCCCTGTAGGGTAG
* * *
23826306 AATTATCGAGATACCTTGTGGGGTAAAATTACC
1 AATTATCGAGATACCCTGTAGGGTAGAATTACC
23826339 ATTTTGCCCC
Statistics
Matches: 170, Mismatches: 17, Indels: 15
0.84 0.08 0.07
Matches are distributed among these distances:
80 88 0.52
81 80 0.47
82 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (80 bp):
AATTATCGAGATACCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAAT
ACCCCTGTAGGGTAG
Found at i:23826817 original size:22 final size:22
Alignment explanation
Indices: 23826765--23826829 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
23826755 TTAAAGCCTT
* *
23826765 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
23826787 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
23826809 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
23826830 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:23827048 original size:27 final size:26
Alignment explanation
Indices: 23827003--23827061 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
23826993 TTTTCCATAT
*
23827003 TATCTGTTCTGGTGGCTCTGCCACAA
1 TATCTGTTCTGGTGACTCTGCCACAA
* *
23827029 TATCTGTATCTGGTGACTCTGTCGCAA
1 TATCTGT-TCTGGTGACTCTGCCACAA
23827056 TATCTG
1 TATCTG
23827062 ATAACTGAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
TATCTGTTCTGGTGACTCTGCCACAA
Found at i:23827236 original size:6 final size:6
Alignment explanation
Indices: 23827198--23827371 Score: 90
Period size: 6 Copynumber: 27.8 Consensus size: 6
23827188 TTGCATTCAC
* * *
23827198 ATTCTG ATTTTTG ATTCT- ATTACCTG ATACTG ATTCTG ATTTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG A-TTCTG ATTCTG
* * * * *
23827249 -TTACCTG ATACTA ATTCTG ATTTTG TTTCTG -TTACCTG ATACTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * *
23827299 ATTTTG ATTCTG -TTACCTG ATAT-TG ATTATG ATTCTG ATTCTG -TCACCTG
1 ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG AT--TCTG
23827349 ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCT
23827372 AGTTCTAATA
Statistics
Matches: 129, Mismatches: 20, Indels: 38
0.69 0.11 0.20
Matches are distributed among these distances:
5 11 0.09
6 87 0.67
7 24 0.19
8 6 0.05
9 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:23827279 original size:31 final size:31
Alignment explanation
Indices: 23827198--23827371 Score: 249
Period size: 31 Copynumber: 5.5 Consensus size: 31
23827188 TTGCATTCAC
*
23827198 ATTCTGATTTTTGATTCTATTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
23827230 ATTCTGATTTTTGATTCTGTTACCTGATACTA
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
23827262 ATTCTGATTTTGTTTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
23827293 ATTCTGATTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
23827324 ATTATGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
23827355 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
23827372 AGTTCTAATA
Statistics
Matches: 130, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
31 93 0.72
32 37 0.28
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:23839583 original size:16 final size:16
Alignment explanation
Indices: 23839562--23839608 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
23839552 ATTATATTAA
23839562 ATTTATCAAGATAAAT
1 ATTTATCAAGATAAAT
*
23839578 ATTTATCAA-CT--A-
1 ATTTATCAAGATAAAT
23839590 ATTTATCAAGATAAAT
1 ATTTATCAAGATAAAT
23839606 ATT
1 ATT
23839609 ATATTAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
12 9 0.36
13 2 0.08
15 2 0.08
16 12 0.48
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (16 bp):
ATTTATCAAGATAAAT
Found at i:23845051 original size:45 final size:45
Alignment explanation
Indices: 23844983--23845070 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
23844973 GTTCCAAGTG
* *
23844983 TTCATATCATATCAAATCCATACAGTAGTGTAATATGTTAGATTA
1 TTCATATCATATCAAATCCATACAGTAGTGTAACATGCTAGATTA
*
23845028 TTCATATCATATCAAATCTATACAGTAGTGTAACATGCTAGAT
1 TTCATATCATATCAAATCCATACAGTAGTGTAACATGCTAGAT
23845071 CACAACTTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (45 bp):
TTCATATCATATCAAATCCATACAGTAGTGTAACATGCTAGATTA
Found at i:23848980 original size:46 final size:45
Alignment explanation
Indices: 23848913--23849078 Score: 172
Period size: 46 Copynumber: 3.6 Consensus size: 45
23848903 TGTAACCCGC
*
23848913 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
23848959 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * * * *
23849005 ACATCTCTCGAACTCGGACTCAACTCAATGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
23849052 CCATAAGTGAACTCGGACTCAACTCAA
1 CCATAAGTGAACTCGGACTCAACTCAA
23849079 TGAGTTTGGA
Statistics
Matches: 96, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
45 1 0.01
46 61 0.64
47 32 0.33
48 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:23849049 original size:93 final size:93
Alignment explanation
Indices: 23848921--23849092 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
23848911 GCCCATAAGT
* * *
23848921 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23848986 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
23849014 GAACTCGGACTCAACTCAATGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* * *
23849079 TGAGTTTGGATGCC
66 CGAGCTCGGATGCC
23849093 CAAACATCCT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:23857573 original size:39 final size:39
Alignment explanation
Indices: 23857524--23857690 Score: 255
Period size: 39 Copynumber: 4.3 Consensus size: 39
23857514 CGGGACTTTA
*
23857524 AGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCAGGACTT
* *
23857563 AGCCTGGATATAACGCCAGCACGAATGCCTTC-GAGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCAG-GACTT
* *
23857602 AGCCCGGATATAGCACCAGCACAAATGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCAGGACTT
* *
23857641 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCAGGACTT
23857680 AGCCCGGATAT
1 AGCCCGGATAT
23857691 TTTTCCAGCA
Statistics
Matches: 115, Mismatches: 11, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
38 1 0.01
39 113 0.98
40 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCAGGACTT
Found at i:23857726 original size:39 final size:39
Alignment explanation
Indices: 23857683--23857853 Score: 265
Period size: 39 Copynumber: 4.4 Consensus size: 39
23857673 GGGACTTAGC
* *
23857683 CCGGATATTTTTCCAGCACT-TAGCCTGCGGACTTTAAGT
1 CCGGATATTTTTCCAGCA-TAAAGCCTGCGGACTTCAAGT
*
23857722 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
1 CCGGATATTTTTCCAGCATAAAGCCTGCGGACTTCAAGT
* *
23857761 CCGGATATATTTCTAGCATAAAGCCTGCGGACTTCAAGT
1 CCGGATATTTTTCCAGCATAAAGCCTGCGGACTTCAAGT
23857800 CCGGATATATTTT-CAGCATAAAGCCTGCGGACTTCAAGT
1 CCGGATAT-TTTTCCAGCATAAAGCCTGCGGACTTCAAGT
23857839 CCGGATATTTTTCCA
1 CCGGATATTTTTCCA
23857854 ATACCATGCA
Statistics
Matches: 123, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
38 5 0.04
39 115 0.93
40 3 0.02
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATAAAGCCTGCGGACTTCAAGT
Found at i:23857726 original size:78 final size:78
Alignment explanation
Indices: 23857514--23857808 Score: 237
Period size: 78 Copynumber: 3.8 Consensus size: 78
23857504 ACAAAGCATG
* * * *
23857514 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCAGGAC-TT-AG-CCTGGATATAA
1 CGGGAC-TT-AGCCCGGATATATTTCCAGCACTAA-GCCTGC-GGACTTTAAGTCC-GGATATAA
**
23857576 CGCCAGCACGAATGCCTT
61 TACCAGCACGAATGCCTT
* *** * * *
23857594 CGAGACTTAGCCCGGATATAGCACCAGCACAAATGCCTTCAGGAC-TT-AGCCCGGATATAATAC
1 CGGGACTTAGCCCGGATATATTTCCAGCACTAA-GCCTGC-GGACTTTAAGTCCGGATATAATAC
23857657 CAGCACGAATGCCTT
64 CAGCACGAATGCCTT
* * * *
23857672 CGGGACTTAGCCCGGATATTTTTCCAGCACTTAGCCTGCGGACTTTAAGTCCGGATATATTTCCA
1 CGGGACTTAGCCCGGATATATTTCCAGCACTAAGCCTGCGGACTTTAAGTCCGGATATAATACCA
* * *
23857737 GCA-TAAAGCCTG
66 GCACGAATGCCTT
* * *
23857749 C-GGACTTCAAGTCCGGATATATTTCTAGCA-TAAAGCCTGCGGACTTCAAGTCCGGATATA
1 CGGGACTT--AGCCCGGATATATTTCCAGCACT-AAGCCTGCGGACTTTAAGTCCGGATATA
23857809 TTTTCAGCAT
Statistics
Matches: 184, Mismatches: 25, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
76 10 0.05
77 15 0.08
78 150 0.82
79 4 0.02
80 5 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (78 bp):
CGGGACTTAGCCCGGATATATTTCCAGCACTAAGCCTGCGGACTTTAAGTCCGGATATAATACCA
GCACGAATGCCTT
Found at i:23857730 original size:117 final size:115
Alignment explanation
Indices: 23857497--23857846 Score: 316
Period size: 117 Copynumber: 3.0 Consensus size: 115
23857487 AAAATCAAAT
* *
23857497 CACCACCACAAAGCATGCGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCAGGACT
1 CACCAGCACAAAGCCTGC-GGAC-TTAAGCCCGGATATAATACCAGCACGAATGCCTTC-GGACT
* **** * * *
23857562 TAGCCTGGATATAACGCCAGCACGAATGCCTTCGAGAC-TT-AGCCCGGATATAG
63 TAGCCCGGATATTTTTCCAGCACTAA-GCCTGCG-GACTTTAAGTCCGGATATAG
*
23857615 CACCAGCACAAATGCCTTCAGGACTT-AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACT
1 CACCAGCACAAA-GCCTGC-GGACTTAAGCCCGGATATAATACCAGCACGAATGCCTTC-GGACT
* *
23857679 TAGCCCGGATATTTTTCCAGCACTTAGCCTGCGGACTTTAAGTCCGGATATAT
63 TAGCCCGGATATTTTTCCAGCACTAAGCCTGCGGACTTTAAGTCCGGATATAG
** * * * * * * * *
23857732 TTCCAGCATAAAGCCTGCGGACTTCAAGTCCGGATATATTTCTAGCA-TAAAGCCTGCGGACTTC
1 CACCAGCACAAAGCCTGCGGACTT-AAGCCCGGATATAATACCAGCACGAATGCCTTCGGACTT-
* *
23857796 AAGTCCGGATATATTTT-CAGCA-TAAAGCCTGCGGACTTCAAGTCCGGATAT
64 -AGCCCGGATAT-TTTTCCAGCACT-AAGCCTGCGGACTTTAAGTCCGGATAT
23857847 TTTTCCAATA
Statistics
Matches: 194, Mismatches: 29, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
115 15 0.08
116 21 0.11
117 133 0.69
118 17 0.09
119 8 0.04
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (115 bp):
CACCAGCACAAAGCCTGCGGACTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGACTTAG
CCCGGATATTTTTCCAGCACTAAGCCTGCGGACTTTAAGTCCGGATATAG
Found at i:23861702 original size:27 final size:27
Alignment explanation
Indices: 23861661--23861818 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
23861651 CGAGGCTGCT
* *
23861661 AGATATTGTGAC-GAAGTCACCAGATAC
1 AGATATTGTGGCAG-AGCCACCAGATAC
23861688 AGATATTGTGGC-GAAGCCACCAGA-AC
1 AGATATTGTGGCAG-AGCCACCAGATAC
23861714 AGATATATGTGGCAGAGCCACCAGAT-C
1 AGATAT-TGTGGCAGAGCCACCAGATAC
* *
23861741 AGATAATTGTGGCATAGCCACCAG-GAC
1 AGAT-ATTGTGGCAGAGCCACCAGATAC
23861768 AGATATATGTGGCAGAGCCACCAGAT-C
1 AGATAT-TGTGGCAGAGCCACCAGATAC
*
23861795 AGATAATTGTGGCATAGCCACCAG
1 AGAT-ATTGTGGCAGAGCCACCAG
23861819 GACGCTTCCT
Statistics
Matches: 116, Mismatches: 7, Indels: 16
0.83 0.05 0.12
Matches are distributed among these distances:
26 10 0.09
27 101 0.87
28 5 0.04
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
AGATATTGTGGCAGAGCCACCAGATAC
Found at i:23861819 original size:54 final size:54
Alignment explanation
Indices: 23861678--23861821 Score: 247
Period size: 54 Copynumber: 2.7 Consensus size: 54
23861668 GTGACGAAGT
*
23861678 CACCAGATACAGAT-ATTGTGGCGA-AGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGC-ATAGCCACCAGGACAGATATATGTGGCAGAGC
23861732 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
23861786 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
23861822 GCTTCCTCCA
Statistics
Matches: 87, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
53 6 0.07
54 81 0.93
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:23863440 original size:26 final size:26
Alignment explanation
Indices: 23863406--23863510 Score: 192
Period size: 26 Copynumber: 4.0 Consensus size: 26
23863396 AATTCTCATA
23863406 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
*
23863432 ATGGAACATTTACCTAACCTATTATC
1 ATGGAACATTTACCTAACCCATTATC
*
23863458 GTGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
23863484 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
23863510 A
1 A
23863511 ATTTGTATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.31
Consensus pattern (26 bp):
ATGGAACATTTACCTAACCCATTATC
Found at i:23867101 original size:48 final size:48
Alignment explanation
Indices: 23866778--23867103 Score: 415
Period size: 48 Copynumber: 6.8 Consensus size: 48
23866768 ATGCTATGCA
* * * *
23866778 TAAGACCATGTCTAGGACATGGCATCGGCATCTGAGATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCAT-TGATATGTGTGCCAGTG
* * * ***
23866827 TTAGACCATGTTTGGGATATGGCATCGATGTTGATATGTGTGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAGTG
*
23866875 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAGTG
* *
23866923 TAAGACCATGTCTGGGAAATGGCATCGGCATTAATATGTGTGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAGTG
* *
23866971 TAAGACCATGTTTGGAACATGGCATCGGC-TTGATATGTGTGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAGTG
* *
23867018 TAAGACCATGTCTAGGACATGGCGT-GGACGA-TGATATGTGTGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGG-C-ATTGATATGTGTGCCAGTG
* * * *
23867066 TAAGACTATGTTTGGGACATGGCATTGGCACTGATATG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATG
23867104 AGACTTCGTA
Statistics
Matches: 240, Mismatches: 32, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
46 2 0.01
47 40 0.17
48 172 0.72
49 26 0.11
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAGTG
Found at i:23867103 original size:143 final size:143
Alignment explanation
Indices: 23866778--23867106 Score: 448
Period size: 143 Copynumber: 2.3 Consensus size: 143
23866768 ATGCTATGCA
* * * *
23866778 TAAGACCATGTCTAGGACATGGCATCGGCATCTGAGATGAGAGCCAGTGTTAGACCATGTTTGGG
1 TAAGACCATGTCTGGGACATGGCATCGGCA-CTGATATGAGAGCCAGTGTAAGACCATGTTTGGA
* *
23866843 ATATGGCATCGATGTTGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG
65 ACATGGCATCGA-GTTGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTG
*
23866908 ATATGTGTGCTAGTG
129 ATATGTGTGCCAGTG
* * * * *
23866923 TAAGACCATGTCTGGGAAATGGCATCGGCATTAATATGTGTGCCAGTGTAAGACCATGTTTGGAA
1 TAAGACCATGTCTGGGACATGGCATCGGCACTGATATGAGAGCCAGTGTAAGACCATGTTTGGAA
*
23866988 CATGGCATCG-GCTTGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCGT-GGACGA-T
66 CATGGCATCGAG-TTGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGG-C-ATT
23867050 GATATGTGTGCCAGTG
128 GATATGTGTGCCAGTG
* * *
23867066 TAAGACTATGTTTGGGACATGGCATTGGCACTGATATGAGA
1 TAAGACCATGTCTGGGACATGGCATCGGCACTGATATGAGA
23867107 CTTCGTATAA
Statistics
Matches: 160, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
142 3 0.02
143 91 0.57
144 38 0.24
145 28 0.17
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (143 bp):
TAAGACCATGTCTGGGACATGGCATCGGCACTGATATGAGAGCCAGTGTAAGACCATGTTTGGAA
CATGGCATCGAGTTGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAT
ATGTGTGCCAGTG
Found at i:23867120 original size:191 final size:193
Alignment explanation
Indices: 23866778--23867136 Score: 465
Period size: 191 Copynumber: 1.9 Consensus size: 193
23866768 ATGCTATGCA
* * *
23866778 TAAGACCATGTCTAGGACATGGCATCGGCATCTGAGATGAGAGCCAGTGTTAGACCATGTTTGGG
1 TAAGACCATGTCTAGGACATGGCATCGGCATCTGAGATGAGAGCCAGTGTAAGACCATGTCTAGG
* * * *
23866843 ATATGGCATCGATGTTGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG
66 ACATGGCATCGACGATGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTG
* * * * *
23866908 ATATGTGTGCTAGTGTAAGACCATGTCTGGGAAATGGCATCGGCATTAATATGTGTGCCAGTG
131 ATATGAGTACTAGTATAAGACCATATATGGGAAATGGCATCGGCATTAATATGTGTGCCAGTG
* * * *
23866971 TAAGACCATGT-TTGGAACATGGCATCGGC-T-TGATATGTGTGCCAGTGTAAGACCATGTCTAG
1 TAAGACCATGTCTAGG-ACATGGCATCGGCATCTGAGATGAGAGCCAGTGTAAGACCATGTCTAG
* * * * *
23867033 GACATGGCGTGGACGATGATATGTGTGCCAGTGTAAGACTATGTTTGGGACATGGCATTGGCACT
65 GACATGGCATCGACGATGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACT
* *
23867098 GATATGAG-ACTTCGTATAAGACCATATATGGGATATGGC
130 GATATGAGTAC-TAGTATAAGACCATATATGGGAAATGGC
23867137 GTCGACATGT
Statistics
Matches: 141, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
190 1 0.01
191 112 0.79
192 4 0.03
193 24 0.17
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (193 bp):
TAAGACCATGTCTAGGACATGGCATCGGCATCTGAGATGAGAGCCAGTGTAAGACCATGTCTAGG
ACATGGCATCGACGATGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTG
ATATGAGTACTAGTATAAGACCATATATGGGAAATGGCATCGGCATTAATATGTGTGCCAGTG
Found at i:23870053 original size:27 final size:26
Alignment explanation
Indices: 23870022--23870200 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 26
23870012 ATATTGAGTC
* *
23870022 CGCACACTCAGTGCTATATCATCAACT
1 CGCACACTTAGTGCTACAT-ATCAACT
* *
23870049 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACAT-ATCAACT
23870076 CGCACACTTAGTGCTAACATAGTCAAACT
1 CGCACACTTAGTGCT-ACATA-TC-AACT
** * *
23870105 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACAT-ATCAACT
**
23870132 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATA-TCAACT
* *
23870159 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATA-TCAACT
23870186 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23870201 GTACAATTTA
Statistics
Matches: 127, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
27 99 0.78
28 11 0.09
29 17 0.13
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (26 bp):
CGCACACTTAGTGCTACATATCAACT
Found at i:23870162 original size:83 final size:81
Alignment explanation
Indices: 23870043--23870199 Score: 235
Period size: 83 Copynumber: 1.9 Consensus size: 81
23870033 TGCTATATCA
*
23870043 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTAACATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGC-AACATAGTCAAA-TCGC
23870108 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
23870126 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
23870190 CACTTAGTGC
65 CACTTAGTGC
23870200 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
81 15 0.22
82 13 0.19
83 40 0.59
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:23870183 original size:54 final size:56
Alignment explanation
Indices: 23870045--23870200 Score: 199
Period size: 54 Copynumber: 2.8 Consensus size: 56
23870035 CTATATCATC
* * *
23870045 AACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTAACATAGTCA
1 AACTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTAACATAGTCA
** * * * *
23870101 AACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTC-
1 AACTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTAACATAGTCA
**
23870155 ATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCT
1 AACTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCT
23870201 GTACAATTTA
Statistics
Matches: 85, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
54 39 0.46
55 7 0.08
56 39 0.46
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (56 bp):
AACTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTAACATAGTCA
Found at i:23878063 original size:27 final size:26
Alignment explanation
Indices: 23878032--23878209 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
23878022 ATATTGAGTC
* *
23878032 CGCACACTCAGTGCTATATCATCAACT
1 CGCACACTTAGTGCTACAT-ATCAACT
* *
23878059 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACAT-ATCAACT
23878086 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATA-TC-AACT
** * *
23878114 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACAT-ATCAACT
**
23878141 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATA-TCAACT
* *
23878168 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATA-TCAACT
23878195 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23878210 GTACAATTTA
Statistics
Matches: 127, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 103 0.81
28 23 0.18
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (26 bp):
CGCACACTTAGTGCTACATATCAACT
Found at i:23878171 original size:82 final size:81
Alignment explanation
Indices: 23878053--23878208 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23878043 TGCTATATCA
* *
23878053 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
23878118 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
23878135 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
23878199 CACTTAGTGC
65 CACTTAGTGC
23878209 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:23882225 original size:18 final size:18
Alignment explanation
Indices: 23882202--23882238 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
23882192 TTTAGTGTCA
23882202 CACGACCGTATCACACAG
1 CACGACCGTATCACACAG
23882220 CACGACCGTATCACACAG
1 CACGACCGTATCACACAG
23882238 C
1 C
23882239 CGTGTGGCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.41, G:0.16, T:0.11
Consensus pattern (18 bp):
CACGACCGTATCACACAG
Found at i:23898011 original size:47 final size:47
Alignment explanation
Indices: 23897953--23898343 Score: 588
Period size: 47 Copynumber: 8.3 Consensus size: 47
23897943 TGTACAAGTA
* *
23897953 TATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
23898000 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
23898047 CATATATGAGATAAGGCCGAATGGCCAATATGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
23898094 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
23898141 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
23898188 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
23898235 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* *
23898282 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATG
*
23898329 TATAAATGTGATAAG
1 TATATATGTGATAAG
23898344 TCCCGAAGGG
Statistics
Matches: 311, Mismatches: 31, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
46 1 0.00
47 307 0.99
48 3 0.01
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.26
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:23898221 original size:22 final size:22
Alignment explanation
Indices: 23898194--23898315 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
23898184 CATGTGTATG
23898194 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
23898216 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
23898241 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
23898263 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
23898288 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
23898310 TGTGAT
1 TGTGAT
23898316 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:23898343 original size:94 final size:94
Alignment explanation
Indices: 23897954--23898322 Score: 659
Period size: 94 Copynumber: 3.9 Consensus size: 94
23897944 GTACAAGTAT
* * *
23897954 ATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
23898019 AATGGCCAATGTGATGAATGTGAACATGC
66 AATGGCCAATGTGATGAATGTGAACATGC
*
23898048 ATATATGAGATAAGGCCGAATGGCCAATATGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
23898113 AATGGCCAATGTGATGAATGTGAACATGC
66 AATGGCCAATGTGATGAATGTGAACATGC
23898142 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
23898207 AATGGCCAATGTGATGAATGTGAACATGC
66 AATGGCCAATGTGATGAATGTGAACATGC
* *
23898236 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCC
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCC
*
23898300 GAATGGCCAATGTGATGGATGTG
65 GAATGGCCAATGTGATGAATGTG
23898323 GAAGTGTATA
Statistics
Matches: 266, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
93 1 0.00
94 265 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (94 bp):
ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
AATGGCCAATGTGATGAATGTGAACATGC
Found at i:23900691 original size:48 final size:48
Alignment explanation
Indices: 23900576--23900893 Score: 379
Period size: 48 Copynumber: 6.6 Consensus size: 48
23900566 TGAGATCCCC
* * * *
23900576 TGTAAGACCATGTTTGGGACATGGCATCGACATCCTAGATA--AGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGT--T-GATATGTGTGCCAG
* * * *
23900625 TGTAAGACCATGTATGGGATATGGCATTGGCGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCAG
* *
23900673 TGTAAAACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCAG
* * *
23900721 TGTAAGGCCATGTCTAGGACATGGCATCGACGTTGATATGTGTGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCAG
* * *
23900769 TGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCAG
* * * * *
23900817 TGTAAGGCCATGTTTGGGACATGACATCGACGATGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCAG
* **
23900865 TGTAAGATCATGTCCAGGACATGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
23900894 GCACCGATAT
Statistics
Matches: 231, Mismatches: 36, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
46 4 0.02
47 1 0.00
48 198 0.86
49 28 0.12
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCAG
Found at i:23900837 original size:144 final size:144
Alignment explanation
Indices: 23900620--23900893 Score: 422
Period size: 144 Copynumber: 1.9 Consensus size: 144
23900610 CTAGATAAGA
* * *
23900620 GCCAGTGTAAGACCATGTATGGGATATGGCATTGGCGTTGATATGTGTGCCAGTGTAAAACCATG
1 GCCAATGTAAGACCATGTATGGGACATGGCATTGGCATTGATATGTGTGCCAGTGTAAAACCATG
* * * *
23900685 TCTGGGACATGGCATCGACGTTGATATGTGTGCCAATGTAAGGCCATGTCTAGGACATGGCATCG
66 TCTGGGACATGACATCGACGATGATATGTGTGCCAATGTAAGACCATGTCCAGGACATGGCATCG
23900750 ACGTTGATATGTGT
131 ACGTTGATATGTGT
* **
23900764 GCCAATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGTGCCAGTGTAAGGCCATG
1 GCCAATGTAAGACCATGTATGGGACATGGCATTGGCATTGATATGTGTGCCAGTGTAAAACCATG
* * * *
23900829 TTTGGGACATGACATCGACGATGATATGTGTGCTAGTGTAAGATCATGTCCAGGACATGGCATCG
66 TCTGGGACATGACATCGACGATGATATGTGTGCCAATGTAAGACCATGTCCAGGACATGGCATCG
23900894 GCACCGATAT
Statistics
Matches: 116, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
144 116 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (144 bp):
GCCAATGTAAGACCATGTATGGGACATGGCATTGGCATTGATATGTGTGCCAGTGTAAAACCATG
TCTGGGACATGACATCGACGATGATATGTGTGCCAATGTAAGACCATGTCCAGGACATGGCATCG
ACGTTGATATGTGT
Found at i:23900929 original size:96 final size:96
Alignment explanation
Indices: 23900576--23900947 Score: 282
Period size: 96 Copynumber: 3.9 Consensus size: 96
23900566 TGAGATCCCC
*** * * * * * * * *
23900576 TGTAAGACCATGTTTGGGACATGGCATCGACATCCTAGATAAGAGCCAGTGTAAGACCATGTATG
1 TGTAAGACCATGTCCAGGACATGGCATCGGCA-CCGATATGAGTGCCAGTATAAGACCATATTTG
* * * * *
23900641 GGATATGGCATTGGCGTTGATATGTGTGCCAG
65 GGACATGGCATCGACGATGATATGTGTGCCAA
* ** * *** * * * * * * *
23900673 TGTAAAACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCAATGTAAGGCCATGTCTAG
1 TGTAAGACCATGTCCAGGACATGGCATCGGCACCGATATGAGTGCCAGTATAAGACCATATTTGG
*
23900738 GACATGGCATCGACGTTGATATGTGTGCCAA
66 GACATGGCATCGACGATGATATGTGTGCCAA
** * ** * * * *
23900769 TGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGTGCCAGTGTAAGGCCATGTTTGG
1 TGTAAGACCATGTCCAGGACATGGCATCGGCACCGATATGAGTGCCAGTATAAGACCATATTTGG
* * *
23900834 GACATGACATCGACGATGATATGTGTGCTAG
66 GACATGGCATCGACGATGATATGTGTGCCAA
* *
23900865 TGTAAGATCATGTCCAGGACATGGCATCGGCACCGATATGAGACT-TC-GTATAAGACCATATTT
1 TGTAAGACCATGTCCAGGACATGGCATCGGCACCGATATGAG--TGCCAGTATAAGACCATATTT
*
23900928 GGGATATGGCATCGAC-ATGA
64 GGGACATGGCATCGACGATGA
23900948 AGATCCATAT
Statistics
Matches: 231, Mismatches: 42, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
95 4 0.02
96 196 0.85
97 30 0.13
98 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (96 bp):
TGTAAGACCATGTCCAGGACATGGCATCGGCACCGATATGAGTGCCAGTATAAGACCATATTTGG
GACATGGCATCGACGATGATATGTGTGCCAA
Found at i:23912463 original size:50 final size:49
Alignment explanation
Indices: 23912340--23912578 Score: 257
Period size: 50 Copynumber: 4.8 Consensus size: 49
23912330 CGAAGCTATC
* * * *
23912340 TGATACACATAGTAGCCTGCACTTAGTACTACACATGCGATC-AATAAT
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAATCAT
* * * * *
23912388 TCGGTACATGTAGTAGCCTACACTTAGTACTACACACGTGACCTCATCAT
1 T-GATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAATCAT
* * *
23912438 CTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCAT
1 -TGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-TCAT
* * * *
23912489 TGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAAT-AGT
1 TGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAATCA-T
*
23912539 ATGATACACGTAGTAGCCTACACTTAGTACTACACACGCG
1 -TGATACACGTAGTAGCCTGCACTTAGTACTACACACGCG
23912579 TATTCACAAT
Statistics
Matches: 158, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
48 1 0.01
49 35 0.22
50 79 0.50
51 43 0.27
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (49 bp):
TGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAATCAT
Found at i:23912545 original size:101 final size:99
Alignment explanation
Indices: 23912340--23912578 Score: 302
Period size: 101 Copynumber: 2.4 Consensus size: 99
23912330 CGAAGCTATC
* * **
23912340 TGATACACATAGTAGCCTGCACTTAGTACTACACATGCGATCAATAATTCGGTACATGTAGTAGC
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGATCAATAATTCGGTACACATAGTAGC
* * *
23912405 CTACACTTAGTACTACACACGTGACCTCATCATC
66 CTACACTTAGTACTACACACGCGACCTAATCATA
* * *
23912439 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCATT-GAGTACGCATAGT
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGATC-AA-TAATTCG-GTACACATAGT
* * *
23912503 AGCCTGCACTTAGTACTACACATGCGACTTAAT-AGTA
63 AGCCTACACTTAGTACTACACACGCGACCTAATCA-TA
*
23912540 TGATACACGTAGTAGCCTACACTTAGTACTACACACGCG
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGCG
23912579 TATTCACAAT
Statistics
Matches: 121, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
99 39 0.32
100 4 0.03
101 78 0.64
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (99 bp):
TGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGATCAATAATTCGGTACACATAGTAGC
CTACACTTAGTACTACACACGCGACCTAATCATA
Found at i:23928311 original size:18 final size:18
Alignment explanation
Indices: 23928275--23928324 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
23928265 GGCCCATTGA
* *
23928275 AGTAACAGTAAATAGTGC
1 AGTAACAGTAAACAATGC
*
23928293 AGTAATAGTAAACAATGC
1 AGTAACAGTAAACAATGC
*
23928311 AATAACAGTAAACA
1 AGTAACAGTAAACA
23928325 GTATGCAAGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (18 bp):
AGTAACAGTAAACAATGC
Found at i:23936950 original size:49 final size:50
Alignment explanation
Indices: 23936865--23936990 Score: 141
Period size: 49 Copynumber: 2.6 Consensus size: 50
23936855 TACAAGCTAG
* * *
23936865 TGTAAGACCTTTCTGGGACATGGCATC-GACACCGATAGATGAGAGCCAA
1 TGTAAGACCTGTCTGGGACATGGCATCAGACACCGATAGATAAAAGCCAA
* * * *
23936914 TGTAAGATCTGTCTGGGACATGGCATCAG-C-CTCGATATATAAAAGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCAGACAC-CGATAGATAAAAGCCAA
* *
23936963 TGTAAGACCTGTCTAGGACACGGCATCA
1 TGTAAGACCTGTCTGGGACATGGCATCA
23936991 ACTTTAATGT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
48 1 0.02
49 63 0.97
50 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.23
Consensus pattern (50 bp):
TGTAAGACCTGTCTGGGACATGGCATCAGACACCGATAGATAAAAGCCAA
Found at i:23936982 original size:98 final size:97
Alignment explanation
Indices: 23936810--23936989 Score: 231
Period size: 98 Copynumber: 1.8 Consensus size: 97
23936800 GGTGGTATGT
* * * *
23936810 GAGCCAGTGTAAGACATGTTTGGAACATGCATCGGCCTCATGATATACAAGCTAGTGTAAGACCT
1 GAGCCAATGTAAGACATGTCTGGAACATGCATCAGCCTCATGATATAAAAGCTAGTGTAAGACCT
* * *
23936875 TTCTGGGACATGGCATCGACACCGATAGATGA
66 GTCTAGGACACGGCATCGACACCGATAGATGA
*
23936907 GAGCCAATGTAAGATC-TGTCTGGGACATGGCATCAGCCTCGAT-ATATAAAAG-TCAGTGTAAG
1 GAGCCAATGTAAGA-CATGTCTGGAACAT-GCATCAGCCTC-ATGATATAAAAGCT-AGTGTAAG
23936969 ACCTGTCTAGGACACGGCATC
62 ACCTGTCTAGGACACGGCATC
23936990 AACTTTAATG
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
97 24 0.34
98 45 0.63
99 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (97 bp):
GAGCCAATGTAAGACATGTCTGGAACATGCATCAGCCTCATGATATAAAAGCTAGTGTAAGACCT
GTCTAGGACACGGCATCGACACCGATAGATGA
Found at i:23944619 original size:48 final size:49
Alignment explanation
Indices: 23944503--23944623 Score: 147
Period size: 49 Copynumber: 2.5 Consensus size: 49
23944493 TATAAGAGCC
** *
23944503 AGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGACGATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCATCAAGACGATGAAAGCT
* * *
23944552 AGTGTAAGATATGTCTGGGACATGCATCAGCCTCAAGA-TAT-ACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCATCAAGACGATGA-AAGCT
* *
23944600 AGTTTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
23944624 GCGCCAGCTT
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
47 1 0.02
48 27 0.44
49 34 0.55
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCATCAAGACGATGAAAGCT
Found at i:23944715 original size:49 final size:49
Alignment explanation
Indices: 23944643--23944821 Score: 177
Period size: 49 Copynumber: 3.7 Consensus size: 49
23944633 TGTTGTGTGT
* *
23944643 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACT-GATAGATGAGAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGAC-CTCGATAGATGAAAGC
* * * *
23944692 CAGTGTAAGACCCATCTAGGACATGGCATC-AGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTATCTGGGACATGGCATCGA-CCTCGATAGATGAAAGC
* * ** **
23944741 CAGTGTAAGACCTACCTGGGACATGGCATCGACTTTAAT-G-TGCTAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATAGATGAAAGC
* *
23944788 CAGTGTAAGACCATGTCTGGGACATGGCGTCGAC
1 CAGTGTAAGACC-TATCTGGGACATGGCATCGAC
23944822 ATGTTATCCT
Statistics
Matches: 107, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
47 16 0.15
48 21 0.20
49 69 0.64
50 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.22
Consensus pattern (49 bp):
CAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:23947413 original size:93 final size:94
Alignment explanation
Indices: 23947250--23947421 Score: 267
Period size: 93 Copynumber: 1.8 Consensus size: 94
23947240 CGATGGTTGA
* ***
23947250 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTAATGGGATGCGAATGTTTGAACTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTAATGGGATGCGAACGCCCGAACTCGTTGAG
23947315 TTGAGTCCGAGTTCGTGAGATGTAACTAG
66 TTGAGTCCGAGTTCGTGAGATGTAACTAG
* *
23947344 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTT-AT-GGATGCGAACGCCCGAGCTCGTTGA
1 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTAATGGGATGCGAACGCCCGAACTCGTTGA
23947407 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
23947422 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
93 35 0.49
94 25 0.35
95 11 0.15
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (94 bp):
GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTAATGGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:23947415 original size:46 final size:46
Alignment explanation
Indices: 23947254--23947429 Score: 173
Period size: 47 Copynumber: 3.8 Consensus size: 46
23947244 GGTTGAGCAT
* *
23947254 CCGAACTCGTTGAGTTGAGT-CGAGTTCACTTAATGGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTT-AT-GGATGCGAACGC
** * * *
23947301 TTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
*
23947346 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
23947394 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23947430 GCAGGTTACA
Statistics
Matches: 106, Mismatches: 13, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 1 0.01
46 37 0.35
47 44 0.42
48 11 0.10
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Done.