Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 76 of 325
Found at i:23950374 original size:46 final size:44
Alignment explanation
Indices: 23950243--23950448 Score: 157
Period size: 46 Copynumber: 4.5 Consensus size: 44
23950233 GACGAGGGCT
* * * *
23950243 AGTGTAAGACATGTCTGGGACACGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAG-ATG-TAGCC
*
23950289 AGTGTAAGACATGTCTGGGACATGCATCGACCT-CAAGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCG-GCTAC-AGATG-TAGCC
* * * *
23950335 ACTGTCAGACATGTCTGGGACATGCGTCGGCTACGAGATGT-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTAC-AGATGTAGCC
* * * * * * *
23950379 AGTGTAATACATGTCTAGGACATGCGTCAGCATAGTTACATGT-GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-TA--CAGATGTAGCC
*
23950425 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
23950449 GCATTGACAC
Statistics
Matches: 130, Mismatches: 24, Indels: 12
0.78 0.14 0.07
Matches are distributed among these distances:
44 28 0.22
45 5 0.04
46 94 0.72
47 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACAGATGTAGCC
Found at i:23956715 original size:18 final size:18
Alignment explanation
Indices: 23956694--23956734 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
23956684 AGTCGTGTTG
*
23956694 CAACATAGGTCTGTGTCA
1 CAACATAGGTCAGTGTCA
*
23956712 CAACATAGGTCAGTGTCG
1 CAACATAGGTCAGTGTCA
23956730 CAACA
1 CAACA
23956735 CAGCATGAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (18 bp):
CAACATAGGTCAGTGTCA
Found at i:23976073 original size:26 final size:27
Alignment explanation
Indices: 23976044--23976103 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
23976034 CCACATATAT
*
23976044 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * * *
23976070 ATATTTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
23976097 ATATCTG
1 ATATCTG
23976104 GCAGCCTCGC
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:23979732 original size:57 final size:57
Alignment explanation
Indices: 23979644--23979760 Score: 225
Period size: 57 Copynumber: 2.1 Consensus size: 57
23979634 AAGCTGTCGC
23979644 GATACATAAGCAACCACTTTACCCTCTTGCATCAGCACACAGCCCAACCCTACATGT
1 GATACATAAGCAACCACTTTACCCTCTTGCATCAGCACACAGCCCAACCCTACATGT
*
23979701 GATACATAAGCAACCATTTTACCCTCTTGCATCAGCACACAGCCCAACCCTACATGT
1 GATACATAAGCAACCACTTTACCCTCTTGCATCAGCACACAGCCCAACCCTACATGT
23979758 GAT
1 GAT
23979761 GCATCAACCC
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.32, C:0.35, G:0.11, T:0.22
Consensus pattern (57 bp):
GATACATAAGCAACCACTTTACCCTCTTGCATCAGCACACAGCCCAACCCTACATGT
Found at i:23989803 original size:40 final size:40
Alignment explanation
Indices: 23989748--23989939 Score: 305
Period size: 40 Copynumber: 4.8 Consensus size: 40
23989738 CGGATGATAA
*
23989748 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
23989788 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
23989828 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
23989868 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* *
23989908 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
23989940 AGCTATATCC
Statistics
Matches: 141, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.01
40 140 0.99
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:23995400 original size:10 final size:10
Alignment explanation
Indices: 23995385--23995455 Score: 69
Period size: 10 Copynumber: 7.4 Consensus size: 10
23995375 CATGTGAGAA
23995385 AAAAAATTAT
1 AAAAAATTAT
*
23995395 AAAAAA-TAG
1 AAAAAATTAT
**
23995404 AAATCA--AT
1 AAAAAATTAT
23995412 A-AAAATTAT
1 AAAAAATTAT
23995421 AAAAAATTAT
1 AAAAAATTAT
*
23995431 TAAAAATTAT
1 AAAAAATTAT
23995441 AAAAAATTTAT
1 AAAAAA-TTAT
23995452 AAAA
1 AAAA
23995456 TGCATCATAA
Statistics
Matches: 49, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
7 2 0.04
8 2 0.04
9 9 0.18
10 28 0.57
11 8 0.16
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.28
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:23995454 original size:20 final size:19
Alignment explanation
Indices: 23995385--23995455 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
23995375 CATGTGAGAA
23995385 AAAAAATTATAAAAA--AT
1 AAAAAATTATAAAAATTAT
* *
23995402 -AGAAATCAATAAAAATTAT
1 AAAAAAT-TATAAAAATTAT
23995421 AAAAAATTATTAAAAATTAT
1 AAAAAATTA-TAAAAATTAT
23995441 AAAAAATTTATAAAA
1 AAAAAA-TTATAAAA
23995456 TGCATCATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
16 5 0.11
17 7 0.16
19 3 0.07
20 26 0.59
21 3 0.07
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.28
Consensus pattern (19 bp):
AAAAAATTATAAAAATTAT
Found at i:23995699 original size:57 final size:57
Alignment explanation
Indices: 23995638--23995773 Score: 138
Period size: 57 Copynumber: 2.4 Consensus size: 57
23995628 GTACAATAAT
* *
23995638 TTTTATAATTTTTTCTGTATTTCTAT-ATATTTTATA-TTTTT-AACGATTTTT-ATAAAA
1 TTTTACAATTTTTT-TATATTTCTATGAT-TTTTATAGTTTTTCAA--ATTTTTAATAAAA
* *
23995695 TTTTACAATTTTTTTATTTTTTTATGATTTTTATAGTTTTTCAAATTTTTAATAAAA
1 TTTTACAATTTTTTTATATTTCTATGATTTTTATAGTTTTTCAAATTTTTAATAAAA
*
23995752 -TTTAAATATATTTTTTATATTT
1 TTTTACA-AT-TTTTTTATATTT
23995774 TTCATTTAAA
Statistics
Matches: 67, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
56 26 0.39
57 28 0.42
58 13 0.19
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (57 bp):
TTTTACAATTTTTTTATATTTCTATGATTTTTATAGTTTTTCAAATTTTTAATAAAA
Found at i:23998005 original size:22 final size:21
Alignment explanation
Indices: 23997955--23998011 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 21
23997945 GTAATTACAT
23997955 ATTAATACATTTATATTATTTTA
1 ATTAATAC-TTT-TATTATTTTA
* *
23997978 A-AAATACTTTTTTTACTTTTA
1 ATTAATACTTTTATTA-TTTTA
*
23997999 ATTAATAATTTTA
1 ATTAATACTTTTA
23998012 AGGCATTTGT
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
20 4 0.15
21 9 0.33
22 13 0.48
23 1 0.04
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTAATACTTTTATTATTTTA
Found at i:24000846 original size:11 final size:11
Alignment explanation
Indices: 24000832--24000871 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
24000822 TGTTTTCTCT
*
24000832 CTATTTTGCTA
1 CTATTTTACTA
24000843 CTATTTTACTA
1 CTATTTTACTA
* *
24000854 TTATGTTACTA
1 CTATTTTACTA
24000865 CTATTTT
1 CTATTTT
24000872 GTTGTTATTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.23, C:0.15, G:0.05, T:0.57
Consensus pattern (11 bp):
CTATTTTACTA
Found at i:24001125 original size:12 final size:12
Alignment explanation
Indices: 24001095--24001127 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
24001085 TATATATTTT
24001095 AAAATT-ATATA
1 AAAATTAATATA
24001106 AAAA-TAATATA
1 AAAATTAATATA
24001117 AAAATTAATAT
1 AAAATTAATAT
24001128 GGGCGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:24003492 original size:31 final size:29
Alignment explanation
Indices: 24003439--24003500 Score: 90
Period size: 31 Copynumber: 2.1 Consensus size: 29
24003429 CCTTTTCATA
24003439 TTTCATTTTCATAACATGGGCCGAAGCCT
1 TTTCATTTTCATAACATGGGCCGAAGCCT
24003468 TTTCATATTTCATATTAC-TGGGCCGAAGCCT
1 TTTCAT-TTTCATA--ACATGGGCCGAAGCCT
24003499 TT
1 TT
24003501 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
29 6 0.20
30 7 0.23
31 15 0.50
32 2 0.07
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.39
Consensus pattern (29 bp):
TTTCATTTTCATAACATGGGCCGAAGCCT
Found at i:24003765 original size:47 final size:48
Alignment explanation
Indices: 24003692--24003831 Score: 216
Period size: 47 Copynumber: 3.0 Consensus size: 48
24003682 GCTTTATCAT
* *
24003692 ATAACTGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCC-CTTTTAATAACT-GGGCATAAGCCCTTTTTA
24003740 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGCATAAGCCC-TTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATAAGCCCTTTTTA
24003786 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATAAGCCCTTTT
24003832 GCACTTCCTC
Statistics
Matches: 86, Mismatches: 2, Indels: 8
0.90 0.02 0.08
Matches are distributed among these distances:
46 29 0.34
47 38 0.44
48 15 0.17
49 4 0.05
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATAAGCCCTTTTTA
Found at i:24003766 original size:23 final size:24
Alignment explanation
Indices: 24003692--24003831 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
24003682 GCTTTATCAT
* *
24003692 ATAACTGAGGCCT-AGCCTCTTTTA
1 ATAACTGGGGCATAAGCC-CTTTTA
24003716 ATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
24003740 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
24003763 ATAACT-GGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
24003786 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
24003810 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
24003832 GCACTTCCTC
Statistics
Matches: 109, Mismatches: 2, Indels: 11
0.89 0.02 0.09
Matches are distributed among these distances:
22 12 0.11
23 37 0.34
24 54 0.50
25 6 0.06
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:24003920 original size:14 final size:15
Alignment explanation
Indices: 24003885--24003947 Score: 67
Period size: 15 Copynumber: 4.1 Consensus size: 15
24003875 GAACATCTCG
24003885 TGTGCATATCATACATCA
1 TGTGCATATCAT--A-CA
24003903 TGTGCATAT-ATACA
1 TGTGCATATCATACA
24003917 TGTGCATATCATACA
1 TGTGCATATCATACA
*
24003932 TGT-CATGTGCATACA
1 TGTGCATAT-CATACA
24003947 T
1 T
24003948 ACATATCATG
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
14 15 0.36
15 16 0.38
17 2 0.05
18 9 0.21
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (15 bp):
TGTGCATATCATACA
Found at i:24003926 original size:32 final size:33
Alignment explanation
Indices: 24003885--24003951 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 33
24003875 GAACATCTCG
*
24003885 TGTGCATATCATACA-TCATGTGCATATATACA
1 TGTGCATATCATACAGTCATGTGCATACATACA
24003917 TGTGCATATCATACATGTCATGTGCATACATACA
1 TGTGCATATCATACA-GTCATGTGCATACATACA
24003951 T
1 T
24003952 ATCATGTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 15 0.47
34 17 0.53
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.34
Consensus pattern (33 bp):
TGTGCATATCATACAGTCATGTGCATACATACA
Found at i:24003940 original size:20 final size:18
Alignment explanation
Indices: 24003885--24003951 Score: 81
Period size: 14 Copynumber: 3.9 Consensus size: 18
24003875 GAACATCTCG
24003885 TGTGCATATCATACATCA
1 TGTGCATATCATACATCA
24003903 TGTGCATAT-AT--A-CA
1 TGTGCATATCATACATCA
24003917 TGTGCATATCATACATGTCA
1 TGTGCATATCATACA--TCA
24003937 TGTGCATA-CATACAT
1 TGTGCATATCATACAT
24003952 ATCATGTTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
14 11 0.26
15 3 0.07
17 4 0.09
18 9 0.21
19 6 0.14
20 10 0.23
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.34
Consensus pattern (18 bp):
TGTGCATATCATACATCA
Found at i:24003948 original size:19 final size:20
Alignment explanation
Indices: 24003885--24003958 Score: 76
Period size: 19 Copynumber: 4.2 Consensus size: 20
24003875 GAACATCTCG
24003885 TGTGCATATCATAC--ATCA
1 TGTGCATATCATACATATCA
24003903 TGTGC--AT-AT--ATA-CA
1 TGTGCATATCATACATATCA
*
24003917 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
24003937 TGTGCATA-CATACATATCA
1 TGTGCATATCATACATATCA
24003956 TGT
1 TGT
24003959 TTATCAAAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
14 7 0.15
15 3 0.07
16 4 0.09
17 2 0.04
18 5 0.11
19 15 0.33
20 10 0.22
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:24004023 original size:25 final size:25
Alignment explanation
Indices: 24003995--24004042 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
24003985 ATATATAAAC
* * *
24003995 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
24004020 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
24004043 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:24151809 original size:40 final size:40
Alignment explanation
Indices: 24151716--24151932 Score: 314
Period size: 40 Copynumber: 5.5 Consensus size: 40
24151706 AAGCCAAGTA
* * *
24151716 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
24151754 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
24151794 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
24151834 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
24151874 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
24151914 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
24151933 TTATCATCCG
Statistics
Matches: 166, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
38 12 0.07
39 17 0.10
40 137 0.83
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:24159687 original size:40 final size:40
Alignment explanation
Indices: 24159594--24159810 Score: 305
Period size: 40 Copynumber: 5.5 Consensus size: 40
24159584 AAGCCAAGTA
* * *
24159594 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
24159632 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
24159672 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
24159712 CCTTCGGGACTTAGCCCAGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
24159752 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
24159792 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
24159811 TTATCATCCG
Statistics
Matches: 164, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
38 12 0.07
39 17 0.10
40 135 0.82
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:24168196 original size:22 final size:22
Alignment explanation
Indices: 24168123--24168185 Score: 108
Period size: 22 Copynumber: 2.9 Consensus size: 22
24168113 GGTCAAACAC
*
24168123 GGGCGTGTCCCTTAGACCACAA
1 GGGCGTGTCCCTTGGACCACAA
*
24168145 GGGCGTGTCTCTTGGACCACAA
1 GGGCGTGTCCCTTGGACCACAA
24168167 GGGCGTGTCCCTTGGACCA
1 GGGCGTGTCCCTTGGACCA
24168186 TACGGGTGTG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.21
Consensus pattern (22 bp):
GGGCGTGTCCCTTGGACCACAA
Found at i:24169908 original size:18 final size:18
Alignment explanation
Indices: 24169885--24169922 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
24169875 TACTCTAAAA
24169885 TAGGGAAATAAAACTAAG
1 TAGGGAAATAAAACTAAG
24169903 TAGGGAAATAAAACTAAG
1 TAGGGAAATAAAACTAAG
24169921 TA
1 TA
24169923 AGCATAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.21, T:0.18
Consensus pattern (18 bp):
TAGGGAAATAAAACTAAG
Found at i:24173973 original size:22 final size:21
Alignment explanation
Indices: 24173943--24173989 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
24173933 TACAAATTAA
24173943 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
24173965 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
24173986 ATCT
1 ATCT
24173990 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:24173995 original size:19 final size:21
Alignment explanation
Indices: 24173960--24174002 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
24173950 AGATTACAAG
24173960 ATCATATCTTCAAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
24173981 ATCATATC-T-AAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
24174000 ATC
1 ATC
24174003 CTTAAAGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
20 1 0.05
21 8 0.36
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (21 bp):
ATCATATCTTCAAGATTGCAT
Found at i:24174679 original size:41 final size:41
Alignment explanation
Indices: 24174634--24174745 Score: 100
Period size: 46 Copynumber: 2.6 Consensus size: 41
24174624 ATACAGAGAT
*
24174634 GCCAAATCATCTTAGATTTGCTTCATCGTAAGCACATGAAA
1 GCCAAATCATCTTAGATTTGCTTCATCGTAAGCACAAGAAA
* * * *
24174675 GCCAAATCAGCTATGTCTTCGATTTG-TTCCTTGTAAGCACAAGAAT
1 GCCAAAT---C-A--TCTTAGATTTGCTTCATCGTAAGCACAAGAAA
* *
24174721 GCCAAACCATCTTGGATTTGCTTCA
1 GCCAAATCATCTTAGATTTGCTTCA
24174746 GTATAAACAT
Statistics
Matches: 56, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
40 10 0.18
41 10 0.18
42 1 0.02
43 1 0.02
44 1 0.02
45 1 0.02
46 22 0.39
47 10 0.18
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (41 bp):
GCCAAATCATCTTAGATTTGCTTCATCGTAAGCACAAGAAA
Found at i:24174767 original size:206 final size:206
Alignment explanation
Indices: 24174398--24175343 Score: 1525
Period size: 206 Copynumber: 4.6 Consensus size: 206
24174388 AATCTGTTAT
* * * *
24174398 CTTCGATCTGTTTTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * * *
24174463 GCGAAAACCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * *
24174528 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTTCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
24174593 GAGACGCCAAA
196 GAGACGCCAAA
*
24174604 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
24174669 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * *
24174734 GGATTTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTTTGCTCTCCGTCGAGTATA
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
*
24174799 GAGATGCCAAA
196 GAGACGCCAAA
* * * *
24174810 CTTCGATTTGTTCTCTGACAATACAGATATGCCAAAACATCTTAGATTTGCTTCATCGTAGGTAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
24174875 GTGAAAGCCAAATTAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
24174940 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
24175005 GAGACGCCAAA
196 GAGACGCCAAA
24175016 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
24175081 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * ** *
24175146 GGATCTGCTTTAGTATAAACATATGAAGGCCAAATCTGCTATGTGTCTGCTCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
24175211 GAGACGCCAAA
196 GAGACGCCAAA
* *
24175222 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAAC-C
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
24175286 GTGAAAGCCAAATCAGCTATGTCCTCAATTTGTTCCTTTTAAGCACAAGGATGCCAAA
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA
24175344 TCTGCTATCT
Statistics
Matches: 687, Mismatches: 53, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
205 55 0.08
206 632 0.92
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATG
GAGACGCCAAA
Found at i:24175382 original size:44 final size:44
Alignment explanation
Indices: 24175315--24175785 Score: 345
Period size: 44 Copynumber: 10.7 Consensus size: 44
24175305 TGTCCTCAAT
* * * * *
24175315 TTGTTCCTTTTAAGCACAAGGATGCCAAATCTGCTATCTTCAAC
1 TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCGAC
**
24175359 TTGTTCCCTATAAACACAGGGATGCC--ATGCTGAAATCTTCGA-
1 TTGTTCCCTATAAACACAGGGATGCCAAAT-CTGCTATCTTCGAC
** * * * * * *
24175401 TCTGCTTTGCTTTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
1 T-TG-TTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCGAC
* * *
24175447 TTGTTCCCCAAAAACACAGGGATGCCAAATCTGCTATCTTCAAC
1 TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCGAC
*** *
24175491 TTGTTCCCTATAAACACAGGGATGCC--ATGCTAAAATATTCGA-
1 TTGTTCCCTATAAACACAGGGATGCCAAAT-CTGCTATCTTCGAC
* * ** * * * *
24175533 TCTGTTTCGCTGTATGCACAGGAATGTCAGATCTGCTATCTTCGAT
1 T-TG-TTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCGAC
* *
24175579 TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTACCTTCAAC
1 TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCGAC
* ** *
24175623 TTGTTCCCTATAAACATAGGGATGCC--ATGCTGAAATCTTCAAC
1 TTGTTCCCTATAAACACAGGGATGCCAAAT-CTGCTATCTTCGAC
**
24175666 TTGTTCCCTATAAACACAGGGATGCC-ACGCTG-TAATCTTCGA-
1 TTGTTCCCTATAAACACAGGGATGCCAAATCTGCT-ATCTTCGAC
** * * * * *
24175708 TCTGCTTTGCTGTAAGCACA-GGAGTGTCAGATCTGCTATCTTCGAT
1 T-TG-TTCCCTATAAACACAGGGA-TGCCAAATCTGCTATCTTCGAC
*
24175754 TTGTTCCCTATAAACACAGGGATACCAAATCT
1 TTGTTCCCTATAAACACAGGGATGCCAAATCT
24175786 TGTTTCTTTG
Statistics
Matches: 328, Mismatches: 77, Indels: 44
0.73 0.17 0.10
Matches are distributed among these distances:
42 9 0.03
43 73 0.22
44 198 0.60
45 40 0.12
46 8 0.02
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (44 bp):
TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCGAC
Found at i:24175470 original size:132 final size:132
Alignment explanation
Indices: 24175329--24175662 Score: 571
Period size: 132 Copynumber: 2.5 Consensus size: 132
24175319 TCCTTTTAAG
*
24175329 CACAAGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
1 CACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
*
24175394 TCTTCGATCTGCTTT-GCTTTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCCAA
66 TCTTCGATCTG-TTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCCAA
24175458 AAA
130 AAA
*
24175461 CACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTAAAA
1 CACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
* * * *
24175526 TATTCGATCTGTTTCGCTGTATGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
66 TCTTCGATCTGTTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCCAAA
24175591 AA
131 AA
* *
24175593 CACAGGGATGCCAAATCTGCTACCTTCAACTTGTTCCCTATAAACATAGGGATGCCATGCTGAAA
1 CACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
24175658 TCTTC
66 TCTTC
24175663 AACTTGTTCC
Statistics
Matches: 190, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
131 3 0.02
132 187 0.98
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (132 bp):
CACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
TCTTCGATCTGTTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCCAAA
AA
Found at i:24175690 original size:175 final size:175
Alignment explanation
Indices: 24175417--24175785 Score: 535
Period size: 175 Copynumber: 2.1 Consensus size: 175
24175407 TTGCTTTAAG
* * * * * * **
24175417 CACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCCAAAAACACAGGGATGCCAAATCTGCT
1 CACAGGGATGCCAAATCTGCTACCTTCAACTTGTTCCCCAAAAACACAGGGATGCC-AATCTGAA
*
24175482 ATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTAAAATATTCGATCTG-TTTCGCTGT
65 ATCTTCAACTTGTTCCCTATAAACACAGGGATGCCACGCTAAAATATTCGATCTGCTTT-GCTGT
*
24175546 ATGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAA
129 AAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAA
* * *
24175593 CACAGGGATGCCAAATCTGCTACCTTCAACTTGTTCCCTATAAACATAGGGATGCC-ATGCTGAA
1 CACAGGGATGCCAAATCTGCTACCTTCAACTTGTTCCCCAAAAACACAGGGATGCCAAT-CTGAA
** *
24175657 ATCTTCAACTTGTTCCCTATAAACACAGGGATGCCACGCTGTAATCTTCGATCTGCTTTGCTGTA
65 ATCTTCAACTTGTTCCCTATAAACACAGGGATGCCACGCTAAAATATTCGATCTGCTTTGCTGTA
*
24175722 AGCACAGGAGTGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAA
130 AGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAA
*
24175768 CACAGGGATACCAAATCT
1 CACAGGGATGCCAAATCT
24175786 TGTTTCTTTG
Statistics
Matches: 173, Mismatches: 18, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
174 2 0.01
175 121 0.70
176 50 0.29
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (175 bp):
CACAGGGATGCCAAATCTGCTACCTTCAACTTGTTCCCCAAAAACACAGGGATGCCAATCTGAAA
TCTTCAACTTGTTCCCTATAAACACAGGGATGCCACGCTAAAATATTCGATCTGCTTTGCTGTAA
GCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAA
Found at i:24176664 original size:23 final size:23
Alignment explanation
Indices: 24176637--24176697 Score: 77
Period size: 24 Copynumber: 2.6 Consensus size: 23
24176627 TTGGCCTCTC
24176637 CATTTTTCTTTTTTCATTTTTCT
1 CATTTTTCTTTTTTCATTTTTCT
**
24176660 CATTTTTCTTTTTATTTTTTTTCT
1 CATTTTTCTTTTT-TCATTTTTCT
**
24176684 TTTTTTTCTTTTTT
1 CATTTTTCTTTTTT
24176698 TCCTCTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 14 0.42
24 19 0.58
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (23 bp):
CATTTTTCTTTTTTCATTTTTCT
Found at i:24176680 original size:9 final size:9
Alignment explanation
Indices: 24176668--24176710 Score: 59
Period size: 9 Copynumber: 4.6 Consensus size: 9
24176658 CTCATTTTTC
*
24176668 TTTTTATTT
1 TTTTTCTTT
24176677 TTTTTCTTT
1 TTTTTCTTT
24176686 TTTTTCTTT
1 TTTTTCTTT
24176695 TTTTCCTCTTT
1 TTTT--TCTTT
24176706 TTTTT
1 TTTTT
24176711 TGAAATAGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
9 22 0.71
11 9 0.29
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:24176686 original size:20 final size:19
Alignment explanation
Indices: 24176653--24176711 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 19
24176643 TCTTTTTTCA
24176653 TTTTT-CTCATTTTTCTTTTT
1 TTTTTCCTC-TTTTT-TTTTT
**
24176673 ATTTTTTTTCTTTTTTTTCTT
1 -TTTTTCCTCTTTTTTTT-TT
24176694 TTTTTCCTCTTTTTTTTT
1 TTTTTCCTCTTTTTTTTT
24176712 GAAATAGAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
19 1 0.03
20 18 0.55
21 12 0.36
22 2 0.06
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (19 bp):
TTTTTCCTCTTTTTTTTTT
Found at i:24176697 original size:7 final size:7
Alignment explanation
Indices: 24176639--24176688 Score: 55
Period size: 7 Copynumber: 6.7 Consensus size: 7
24176629 GGCCTCTCCA
24176639 TTTTTCT
1 TTTTTCT
24176646 TTTTTCAT
1 TTTTTC-T
*
24176654 TTTTCTCA
1 TTTT-TCT
24176662 TTTTTCT
1 TTTTTCT
*
24176669 TTTTATTT
1 TTTT-TCT
24176677 TTTTTCT
1 TTTTTCT
24176684 TTTTT
1 TTTTT
24176689 TTCTTTTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
7 19 0.53
8 15 0.42
9 2 0.06
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTCT
Found at i:24183342 original size:22 final size:21
Alignment explanation
Indices: 24183312--24183377 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
24183302 TAGAAATTAA
24183312 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
24183334 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
24183355 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
24183374 ATCT
1 ATCT
24183378 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:24183364 original size:19 final size:19
Alignment explanation
Indices: 24183329--24183426 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
24183319 AGATTACAAG
24183329 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
24183350 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
24183369 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
24183386 ATCCTATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
24183405 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
24183424 ATC
1 ATC
24183427 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:24183436 original size:36 final size:38
Alignment explanation
Indices: 24183329--24183428 Score: 159
Period size: 36 Copynumber: 2.6 Consensus size: 38
24183319 AGATTACAAG
*
24183329 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTGCATATCCTATCTAAGATTGCAT
24183369 ATCATATCTAAGATTG--TATCCTATCTAAGATTGCAT
1 ATCATATCTAAGATTGCATATCCTATCTAAGATTGCAT
24183405 ATCATATCTAAGATTGCATATCCT
1 ATCATATCTAAGATTGCATATCCT
24183429 TAAAGATTAT
Statistics
Matches: 57, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
36 35 0.61
38 13 0.23
39 1 0.02
40 8 0.14
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (38 bp):
ATCATATCTAAGATTGCATATCCTATCTAAGATTGCAT
Found at i:24184185 original size:206 final size:206
Alignment explanation
Indices: 24183824--24184563 Score: 1081
Period size: 206 Copynumber: 3.6 Consensus size: 206
24183814 AATCTATTAT
* * * *
24183824 CTTCGATCTGTTTTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTATCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * * *
24183889 GCGAAAACCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * **
24183954 GGATCTGCTTCAGTC-TAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTATAATAT
131 GGATCTGCTTCAG-CATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAATAT
* *
24184018 GGGGACGCCAAA
195 GGAGACGCTAAA
24184030 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
24184095 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
24184160 GGATTTGCTTCAGCATAAGCATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAATATA
131 GGATCTGCTTCAGCATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAATATG
*
24184225 GAGTCGCTAAA
196 GAGACGCTAAA
* * * *
24184236 CTTCAATTTGTTCTCTGACAATACAGAGATGCTAAATCATCTTAGATTTGCTACATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
24184301 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAATGATGCCAAATCACCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * * **
24184366 AGATCTGTTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCATCGAATATG
131 GGATCTGCTTCAGCATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAATATG
24184431 GAGACGCTAAA
196 GAGACGCTAAA
* *
24184442 CTTCGATTTGTTCTCTGGCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAA--AC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * *
24184505 TGTGAAAGCCGAATCAGCTAGGTCCTCGATTTGTTCTTTGTAAGCACAAGGATGCCAAA
66 -GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA
24184564 TCTGCTATCT
Statistics
Matches: 484, Mismatches: 48, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
204 2 0.00
205 54 0.11
206 428 0.88
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGCATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAATATG
GAGACGCTAAA
Found at i:24184603 original size:44 final size:43
Alignment explanation
Indices: 24184549--24185001 Score: 364
Period size: 44 Copynumber: 10.3 Consensus size: 43
24184539 TCTTTGTAAG
*
24184549 CACAAGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAA
1 CACAGGGATGCC-AATCTGCTATCTTCAACTTGTTCCCTATAAA
*** ** * *
24184593 CACAGGGATGCC-ATGCTAAAATCTTCAA-TCTGCTTCGTTGTAAG
1 CACAGGGATGCCAAT-CTGCTATCTTCAACT-TG-TTCCCTATAAA
* * * * *
24184637 CACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCCATAAA
1 CACAGGGATGCCA-ATCTGCTATCTTCAACTTGTTCCCTATAAA
24184681 CACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAA
1 CACAGGGATGCC-AATCTGCTATCTTCAACTTGTTCCCTATAAA
* ** * * * **
24184725 CACAGGGATACC-ATGCTGAAATCTTC-GCTCTGCTTCACTGTATG
1 CACAGGGATGCCAAT-CTGCTATCTTCAACT-TG-TTCCCTATAAA
* * * *
24184769 CACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAA
1 CACAGGGATGCCA-ATCTGCTATCTTCAACTTGTTCCCTATAAA
*
24184813 CACAGGGATGCAAAATCTGCTATCTTCAACTTGTTCCCTATAAA
1 CACAGGGATGC-CAATCTGCTATCTTCAACTTGTTCCCTATAAA
**
24184857 CACAGGGATGCC-ATGCTGAAATCTTCAACTTGTTCCCTATAAA
1 CACAGGGATGCCAAT-CTGCTATCTTCAACTTGTTCCCTATAAA
** * * * *
24184900 CACAGGGATGCC-ATGCTGAAATCTTCGA-TCTGCTTCGCTGTAAG
1 CACAGGGATGCCAAT-CTGCTATCTTCAACT-TG-TTCCCTATAAA
* * *
24184944 CACA-GGAGTGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAA
1 CACAGGGA-TGCCA-ATCTGCTATCTTCAACTTGTTCCCTATAAA
24184988 CACAGGGATGCCAA
1 CACAGGGATGCCAA
24185002 ATCTTGTTTC
Statistics
Matches: 325, Mismatches: 62, Indels: 45
0.75 0.14 0.10
Matches are distributed among these distances:
42 10 0.03
43 82 0.25
44 184 0.57
45 40 0.12
46 9 0.03
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (43 bp):
CACAGGGATGCCAATCTGCTATCTTCAACTTGTTCCCTATAAA
Found at i:24184695 original size:132 final size:132
Alignment explanation
Indices: 24184530--24185000 Score: 610
Period size: 132 Copynumber: 3.6 Consensus size: 132
24184520 AGCTAGGTCC
** * * *
24184530 TCGATTTGTTCTTTGTAAGCACAAGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACA
1 TCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACA
* **
24184595 CAGGGATGCCATGCTAAAATCTTCAATCTGCTTCGTTGTAAGCACAGGAATGTCAGATCTGCTAT
66 CAGGGATGCCATGCTGAAATCTTCAATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTAT
24184660 CT
131 CT
*
24184662 TCGATTTGTTCCCCATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACA
1 TCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACA
* ** *
24184727 CAGGGATACCATGCTGAAATCTTCGCTCTGCTTCACTGTATGCACAGGAATGTCAGATCTGCTAT
66 CAGGGATGCCATGCTGAAATCTTCAATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTAT
24184792 CT
131 CT
*
24184794 TCGATTTGTTCCCTATAAACACAGGGATGCAAAATCTGCTATCTTCAACTTGTTCCCTATAAACA
1 TCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACA
* * * * * **
24184859 CAGGGATGCCATGCTGAAATCTTCAA-CTTG-TTCCCTATAAACACAGGGATG-C-CATGCTGAA
66 CAGGGATGCCATGCTGAAATCTTCAATC-TGCTTCACTGTAAGCACAGGAATGTCAGAT-CTGCT
24184920 ATCT
129 ATCT
* * * * * * * *
24184924 TCGATCTGCTTCGCTGTAAGCACA-GGAGTGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAA
1 TCGATTTG-TTCCCTATAAACACAGGGA-TGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAA
24184988 CACAGGGATGCCA
64 CACAGGGATGCCA
24185001 AATCTTGTTT
Statistics
Matches: 300, Mismatches: 35, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
129 2 0.01
130 18 0.06
131 73 0.24
132 207 0.69
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.31
Consensus pattern (132 bp):
TCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACA
CAGGGATGCCATGCTGAAATCTTCAATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTAT
CT
Found at i:24184949 original size:175 final size:175
Alignment explanation
Indices: 24184651--24185005 Score: 586
Period size: 175 Copynumber: 2.0 Consensus size: 175
24184641 GGAATGTCAG
* * **
24184651 ATCTGCTATCTTCGATTTGTTCCCCATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
1 ATCTGCTATCTTCAACTTGTTCCCCATAAACACAGGGATGCC-AATCTGAAATCTTCAACTTGTT
* *
24184716 CCCTATAAACACAGGGATACCATGCTGAAATCTTCGCTCTGCTTCACTGTATGCACAGGAATGTC
65 CCCTATAAACACAGGGATACCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTC
24184781 AGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCAAA
130 AGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCAAA
*
24184827 ATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCC-ATGCTGAAATCTTCAACTTGTT
1 ATCTGCTATCTTCAACTTGTTCCCCATAAACACAGGGATGCCAAT-CTGAAATCTTCAACTTGTT
* * *
24184891 CCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGTGTC
65 CCCTATAAACACAGGGATACCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTC
*
24184956 AGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAA
130 AGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCAAA
24185002 ATCT
1 ATCT
24185006 TGTTTCTTTG
Statistics
Matches: 167, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
174 2 0.01
175 126 0.75
176 39 0.23
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (175 bp):
ATCTGCTATCTTCAACTTGTTCCCCATAAACACAGGGATGCCAATCTGAAATCTTCAACTTGTTC
CCTATAAACACAGGGATACCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCA
GATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCAAA
Found at i:24185877 original size:22 final size:20
Alignment explanation
Indices: 24185859--24185926 Score: 77
Period size: 20 Copynumber: 3.4 Consensus size: 20
24185849 GGCCTCTCCA
*
24185859 TTTTTTTTCATTTTTCTCTT
1 TTTTTTTTCATTTTTCTCTC
*
24185879 TTTTCTTTTTATTTTT-TCTC
1 TTTT-TTTTCATTTTTCTCTC
*
24185899 TTTTTTTTC-TTTTTTTCCTC
1 TTTTTTTTCATTTTTCT-CTC
24185919 TTTTTTTT
1 TTTTTTTT
24185927 GAAATAGAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
18 5 0.12
19 5 0.12
20 22 0.52
21 10 0.24
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTTTTTCATTTTTCTCTC
Found at i:24185881 original size:9 final size:8
Alignment explanation
Indices: 24185860--24185915 Score: 53
Period size: 9 Copynumber: 7.0 Consensus size: 8
24185850 GCCTCTCCAT
24185860 TTTTTTTC
1 TTTTTTTC
*
24185868 -ATTTTTC
1 TTTTTTTC
24185875 TCTTTTTTC
1 T-TTTTTTC
*
24185884 TTTTTAT-
1 TTTTTTTC
*
24185891 TTTTTCTC
1 TTTTTTTC
24185899 TTTTTTTTC
1 -TTTTTTTC
24185908 TTTTTTTC
1 TTTTTTTC
24185916 CTCTTTTTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
7 12 0.31
8 13 0.33
9 14 0.36
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTTTC
Found at i:24188066 original size:659 final size:660
Alignment explanation
Indices: 24186742--24188066 Score: 2052
Period size: 659 Copynumber: 2.0 Consensus size: 660
24186732 TATTTCATAT
* *
24186742 ATCCATAACATTCATATAATTCAAATAAACACATTCCACATTCATTTCAAGCATAAAATTAACAT
1 ATCCATAACATTCATATAATTCAAATAAACACATTCCACATTCATTTCAAACATAAAAGTAACAT
* *
24186807 TTTTTATCATTTATCATTTTTCGGGCATTACCGTTGATCGGGCTTTGTCAGATACAATTTCAATG
66 TTTTTATCATTTATCATTTTTCGGCCATTACCATTGATCGGGCTTTGTCAGATACAATTTCAATG
* *
24186872 TCACATATATATATATTATATTTATACAATTCACAACGAAAAATTTAATTCAAACATATAAACAT
131 TCACACATATATATATGATATTTATACAATTCACAACGAAAAATTTAATTCAAACATATAAACAT
* * ** *
24186937 ACACAAATTAGTTACACGAACTTATATCGACAAATGTTTGTGTATTTAAAATCTACTAATCCGAT
196 ACACAAATTAGTTACACGAACTTACATCGACAAATGTTCGTGTACATAAAATCTACTAATCCGAC
* *
24187002 ATTTTTCCTCTTTTCCTCGTTCTAGCACTGAATTTGATCTATCCGGATCTCTACGAGTAAAATTT
261 ATTTTTCCTCTTTTCCTCGTTCTAGCACTGAATTTGATCTATCCGGATCTATACAAGTAAAATTT
* * * *
24187067 ACATCAATTTATCACATTTCTTATTCAAGTGAACTCAATTTACATCTTAGGTAAAATTACAATTT
326 ACATCAATTTATAACATTTCATATTCAAGTGAACTCAATTTACATCCTAGGCAAAATTACAATTT
* *
24187132 TGCCCCTAACTTTTCCATAAATTCCCGTTTCGTCCCTAGGCTCAAAAAATGAAATTTATGCAATT
391 TGCCCCTAACTTTTCCATAAATTCCCATTTCGTCCCTAGACTCAAAAAATGAAATTTATGCAATT
** *
24187197 TACTCCCTATTCCAAGCCTAATCGAAATCTCACCTTAAAATTTACAGCACATATATTCTATAAAA
456 TACTCCCTATTCCAAGCCTAATCGAAATCTCACCTTAAAATTTACAAAACATATATTCTACAAAA
* * *
24187262 TTCTAGATTTTTCTTCAATTTTCACAAATTTACATTTTAGTCCCTAAATCATGTTTTCATCAAAA
521 TTCTAGATTTTTCTTCAATTCTCACAAATTTACAATTTAATCCCTAAATCATGTTTTCATCAAAA
* *
24187327 ATCACTTTGTAAAAGTTGTTTATCTATCAACAACCTTTCATTTTCTACCATAAATTTCAAATTTT
586 ATCACTTTATAAAAGTTGTTTATCTATCAACAACCTTTCATTTTCTACCACAAATTTCAAATTTT
24187392 CAGCATATAC
651 CAGCATATAC
*
24187402 ATCCATAACATTCATATAATTCAAATAAACACATTCCACATTCATTTTAAACATAAAAGTAACA-
1 ATCCATAACATTCATATAATTCAAATAAACACATTCCACATTCATTTCAAACATAAAAGTAACAT
* *
24187466 TTTTTATCATTTATCATTTTTCGTCCATTATCATTGATCGGGCTTTGTCAGATACAATTTCAATG
66 TTTTTATCATTTATCATTTTTCGGCCATTACCATTGATCGGGCTTTGTCAGATACAATTTCAATG
* * * *
24187531 TCACACATATATATGTGATATTTATACAATTCACAGCGCAAAATTTAATTCAAACATATAATCAT
131 TCACACATATATATATGATATTTATACAATTCACAACGAAAAATTTAATTCAAACATATAAACAT
* * * * *
24187596 GCACAAATTAGTTATATGAATTTACCTCGACAAATGTTCGTGTACATAAAATCTACTAATCCGAC
196 ACACAAATTAGTTACACGAACTTACATCGACAAATGTTCGTGTACATAAAATCTACTAATCCGAC
* *
24187661 A-TTTTCCTCTTTTCCTCGTTCTAGCTCTGAATTTGGTCTATCCGGATCTATACAAGT-AAATTT
261 ATTTTTCCTCTTTTCCTCGTTCTAGCACTGAATTTGATCTATCCGGATCTATACAAGTAAAATTT
* *
24187724 AACAT-AAGTTTATAACATTTCATATTCAAGTGGACTCAATTTATATCCTAGGCAAAATTATC-A
326 -ACATCAA-TTTATAACATTTCATATTCAAGTGAACTCAATTTACATCCTAGGCAAAATTA-CAA
* * **
24187787 TTTTGCCCCTAACTTTTCCATAAATTTCCATTTTGTCCCTAGACTCGGAAAATGAAATTTATGCA
388 TTTTGCCCCTAACTTTTCCATAAATTCCCATTTCGTCCCTAGACTCAAAAAATGAAATTTATGCA
* *
24187852 ATTTATTCCCTATTCCAAGCCTAA-CTGAAATTTCACCTTAAAATTTACAAAACATATATTCTAC
453 ATTTACTCCCTATTCCAAGCCTAATC-GAAATCTCACCTTAAAATTTACAAAACATATATTCTAC
* *
24187916 AAAATT-TAGAATTTTTTCTTCAATTCTCAGAAATTTACAATTTAATTCCTAAATCATGTTTTCA
517 AAAATTCTAG-A-TTTTTCTTCAATTCTCACAAATTTACAATTTAATCCCTAAATCATGTTTTCA
* *
24187980 TCAAAAATCGCTTTATAAAAGTTGTTTATCTATCAAGAACCTTTCATTTTCTACCACAAATTTCA
580 TCAAAAATCACTTTATAAAAGTTGTTTATCTATCAACAACCTTTCATTTTCTACCACAAATTTCA
* *
24188045 GATTTTCAGCATATTC
645 AATTTTCAGCATATAC
24188061 ATCCAT
1 ATCCAT
24188067 GACCTAATTT
Statistics
Matches: 604, Mismatches: 55, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
657 12 0.02
658 226 0.37
659 305 0.50
660 61 0.10
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.38
Consensus pattern (660 bp):
ATCCATAACATTCATATAATTCAAATAAACACATTCCACATTCATTTCAAACATAAAAGTAACAT
TTTTTATCATTTATCATTTTTCGGCCATTACCATTGATCGGGCTTTGTCAGATACAATTTCAATG
TCACACATATATATATGATATTTATACAATTCACAACGAAAAATTTAATTCAAACATATAAACAT
ACACAAATTAGTTACACGAACTTACATCGACAAATGTTCGTGTACATAAAATCTACTAATCCGAC
ATTTTTCCTCTTTTCCTCGTTCTAGCACTGAATTTGATCTATCCGGATCTATACAAGTAAAATTT
ACATCAATTTATAACATTTCATATTCAAGTGAACTCAATTTACATCCTAGGCAAAATTACAATTT
TGCCCCTAACTTTTCCATAAATTCCCATTTCGTCCCTAGACTCAAAAAATGAAATTTATGCAATT
TACTCCCTATTCCAAGCCTAATCGAAATCTCACCTTAAAATTTACAAAACATATATTCTACAAAA
TTCTAGATTTTTCTTCAATTCTCACAAATTTACAATTTAATCCCTAAATCATGTTTTCATCAAAA
ATCACTTTATAAAAGTTGTTTATCTATCAACAACCTTTCATTTTCTACCACAAATTTCAAATTTT
CAGCATATAC
Found at i:24192982 original size:55 final size:53
Alignment explanation
Indices: 24192914--24193053 Score: 165
Period size: 55 Copynumber: 2.6 Consensus size: 53
24192904 TTAAGGGTTT
24192914 AAGGATACCATGTAAGACCATGTCAAGACATGAAATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGAAATTGATAAGTT-C-ATAAGGC
* ** * ** * *
24192969 AAAGG-TCCCATGTAAGACCATACCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGAAATTGATAAGTTCATAAGGC
*
24193022 AAGGATACCATGTAAGACCATGTCGAGACATG
1 AAGGATACCATGTAAGACCATGTCAAGACATG
24193054 GCAATGGTAA
Statistics
Matches: 70, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
52 4 0.06
53 29 0.41
54 1 0.01
55 32 0.46
56 4 0.06
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGAAATTGATAAGTTCATAAGGC
Found at i:24193054 original size:53 final size:56
Alignment explanation
Indices: 24192914--24193066 Score: 188
Period size: 53 Copynumber: 2.8 Consensus size: 56
24192904 TTAAGGGTTT
** *
24192914 AAGGATACCATGTAAGACCATGTCAAGACATGAAATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTATAAGGCA
* ** * *
24192970 AAGG-TCCCATGTAAGACCATACCAAGGCATGGCATTGGTGAGTT-C-ATAAGGC-
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTATAAGGCA
* *
24193022 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT
24193067 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
52 4 0.05
53 40 0.49
54 1 0.01
55 32 0.40
56 4 0.05
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (56 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTATAAGGCA
Found at i:24194132 original size:24 final size:24
Alignment explanation
Indices: 24194099--24194245 Score: 208
Period size: 24 Copynumber: 6.2 Consensus size: 24
24194089 GGCCTTGCCT
* *
24194099 CTTTTAATAACTGGGGCAAAAGTC
1 CTTTTAATAACTGGGGCATAAGCC
*
24194123 CTTTTTATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
24194147 C-TTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
24194170 CTTTTGATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
24194194 CTTTTGATAACTGGGGCATAAG-C
1 CTTTTAATAACTGGGGCATAAGCC
*
24194217 CTTTTAATAATTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
24194241 CTTTT
1 CTTTT
24194246 TCACTTCCTC
Statistics
Matches: 110, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
23 42 0.38
24 68 0.62
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:24194180 original size:71 final size:71
Alignment explanation
Indices: 24194099--24194245 Score: 222
Period size: 71 Copynumber: 2.1 Consensus size: 71
24194089 GGCCTTGCCT
* * * *
24194099 CTTTTAATAACTGGGGCAAAAGTCCTTTTTATAACTGGGGCATAAGCCCTTTAATAACTGGGGCG
1 CTTTTAATAACTAGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCA
24194164 TAAGCC
66 TAAGCC
* * * *
24194170 CTTTTGATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCTTTTAATAATTGGGGCA
1 CTTTTAATAACTAGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCA
24194235 TAAGCC
66 TAAGCC
24194241 CTTTT
1 CTTTT
24194246 TCACTTCCTC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 68 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (71 bp):
CTTTTAATAACTAGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCA
TAAGCC
Found at i:24194245 original size:47 final size:48
Alignment explanation
Indices: 24194099--24194245 Score: 208
Period size: 47 Copynumber: 3.1 Consensus size: 48
24194089 GGCCTTGCCT
* * *
24194099 CTTTTAATAACTGGGGCAAAAGTCCTTTTTATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
* * *
24194147 C-TTTAATAACTGGGGCGTAAGCCCTTTTGATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
* *
24194194 CTTTTGATAACTGGGGCATAAG-CCTTTTAATAATTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
24194241 CTTTT
1 CTTTT
24194246 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
47 69 0.78
48 19 0.22
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (48 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
Found at i:24196327 original size:16 final size:16
Alignment explanation
Indices: 24196306--24196336 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24196296 ATAAATTTGA
24196306 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
24196322 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
24196337 AGTGAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:24205886 original size:68 final size:67
Alignment explanation
Indices: 24205814--24205963 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
24205804 CATCATGTGT
* * * *
24205814 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
24205876 ATGTAG
62 ATGTAG
** * *
24205882 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
24205947 AG
66 AG
24205949 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
24205964 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:24205919 original size:64 final size:64
Alignment explanation
Indices: 24205838--24206021 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
24205828 AGACATTATG
* *
24205838 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
24205902 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
24205967 AA
63 AA
* * * *
24205969 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
24206022 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:24210314 original size:68 final size:67
Alignment explanation
Indices: 24210242--24210391 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
24210232 CATCATGTGT
* * * *
24210242 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
24210304 ATGTAG
62 ATGTAG
** * *
24210310 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
24210375 AG
66 AG
24210377 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
24210392 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:24210347 original size:64 final size:64
Alignment explanation
Indices: 24210266--24210449 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
24210256 AGACATTATG
* *
24210266 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
24210330 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
24210395 AA
63 AA
* * * *
24210397 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
24210450 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:24213094 original size:21 final size:21
Alignment explanation
Indices: 24213065--24213119 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
24213055 GTATTTTAAG
24213065 TTTATGGTTTAAGGTCTGTTAT
1 TTTA-GGTTTAAGGTCTGTTAT
* ** *
24213087 TTTGGGTTTGTGGTTTGTTAT
1 TTTAGGTTTAAGGTCTGTTAT
24213108 TTTAGGTTTAAG
1 TTTAGGTTTAAG
24213120 ATTTAGGGTA
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.15, C:0.02, G:0.27, T:0.56
Consensus pattern (21 bp):
TTTAGGTTTAAGGTCTGTTAT
Found at i:24216151 original size:28 final size:28
Alignment explanation
Indices: 24216120--24216221 Score: 77
Period size: 28 Copynumber: 3.6 Consensus size: 28
24216110 AAGATTTAAA
24216120 GTTTAGGGTTTAATGTTTAGTATTTTAG
1 GTTTAGGGTTTAATGTTTAGTATTTTAG
* **
24216148 GTTTAGGGGTTAA-GATTTTCTATTTT-G
1 GTTTAGGGTTTAATG-TTTAGTATTTTAG
* * *
24216175 TGTTTGGGGTTTAAGGTTTAG-AGTTTAGG
1 -GTTTAGGGTTTAATGTTTAGTATTTTA-G
*
24216204 GTTT-GTGGTTTAGTGTTT
1 GTTTAG-GGTTTAATGTTT
24216222 TATAGTTAGG
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
27 7 0.12
28 49 0.84
29 2 0.03
ACGTcount: A:0.17, C:0.01, G:0.30, T:0.52
Consensus pattern (28 bp):
GTTTAGGGTTTAATGTTTAGTATTTTAG
Found at i:24216205 original size:21 final size:21
Alignment explanation
Indices: 24216176--24216221 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
24216166 TCTATTTTGT
*
24216176 GTTTGGGGTTTAAGGTTTAGA
1 GTTTAGGGTTTAAGGTTTAGA
** *
24216197 GTTTAGGGTTTGTGGTTTAGT
1 GTTTAGGGTTTAAGGTTTAGA
24216218 GTTT
1 GTTT
24216222 TATAGTTAGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.13, C:0.00, G:0.37, T:0.50
Consensus pattern (21 bp):
GTTTAGGGTTTAAGGTTTAGA
Found at i:24216347 original size:7 final size:7
Alignment explanation
Indices: 24216337--24216368 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
24216327 GTAATATATA
24216337 TTTAGGG
1 TTTAGGG
24216344 TTTAGGG
1 TTTAGGG
24216351 TTTAGGG
1 TTTAGGG
24216358 TTTAGGG
1 TTTAGGG
24216365 TTTA
1 TTTA
24216369 AGGATTATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.16, C:0.00, G:0.38, T:0.47
Consensus pattern (7 bp):
TTTAGGG
Found at i:24225615 original size:40 final size:40
Alignment explanation
Indices: 24225558--24225633 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
24225548 CCGATACCTG
* *
24225558 TGTAGTTACATCCTGACTGTCTGCTTGTGTGAGTAGCCCA
1 TGTAGTTACATCATGACTGTCAGCTTGTGTGAGTAGCCCA
*
24225598 TGTAGTTACGTCATGACTGTCAGCTTGTGTGAGTAG
1 TGTAGTTACATCATGACTGTCAGCTTGTGTGAGTAG
24225634 GCCCGTGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.18, C:0.18, G:0.28, T:0.36
Consensus pattern (40 bp):
TGTAGTTACATCATGACTGTCAGCTTGTGTGAGTAGCCCA
Found at i:24238184 original size:20 final size:20
Alignment explanation
Indices: 24238134--24238184 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
24238124 CGAGCTGAGG
24238134 ACAC-GGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
*
24238153 ACACGGGTGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
* *
24238173 ATAGGGGCGTGT
1 ACACGGGCGTGT
24238185 GTAACTACAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.20, C:0.31, G:0.33, T:0.16
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:24238873 original size:25 final size:25
Alignment explanation
Indices: 24238845--24238894 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
24238835 CCGCATCGTT
24238845 GTCGACAGCACTCTGCTACATCTCC
1 GTCGACAGCACTCTGCTACATCTCC
* * * *
24238870 GTCGGCATCCCTCTGCTACTTCTCC
1 GTCGACAGCACTCTGCTACATCTCC
24238895 AGTTTTTTGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.14, C:0.42, G:0.16, T:0.28
Consensus pattern (25 bp):
GTCGACAGCACTCTGCTACATCTCC
Found at i:24239019 original size:22 final size:23
Alignment explanation
Indices: 24238973--24239019 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
24238963 GGAAAGACAG
* * *
24238973 TTTTCTATACTTATGTATGTTCT
1 TTTTCTATACTTAGGTAAGTGCT
24238996 TTTTCTATACTTAGGTAAG-GCT
1 TTTTCTATACTTAGGTAAGTGCT
24239018 TT
1 TT
24239020 GATCCTCCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.19, C:0.13, G:0.13, T:0.55
Consensus pattern (23 bp):
TTTTCTATACTTAGGTAAGTGCT
Found at i:24239933 original size:18 final size:18
Alignment explanation
Indices: 24239910--24239952 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
24239900 AATATTTAAA
24239910 GAATAAAAGATAACTTTG
1 GAATAAAAGATAACTTTG
24239928 GAATAAAAGATAACTTTG
1 GAATAAAAGATAACTTTG
*
24239946 GTATAAA
1 GAATAAA
24239953 TGACTTCTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.51, C:0.05, G:0.16, T:0.28
Consensus pattern (18 bp):
GAATAAAAGATAACTTTG
Found at i:24240218 original size:43 final size:43
Alignment explanation
Indices: 24240111--24240204 Score: 136
Period size: 43 Copynumber: 2.2 Consensus size: 43
24240101 TTAATAACTT
* *
24240111 ATATCTATCATATCATAACTTACATAACTTACATAATACATAA
1 ATATATATTATATCATAACTTACATAACTTACATAATACATAA
*
24240154 ATATATATTATATCATAACTTACATAACTTA-ATTATACTTATAA
1 ATATATATTATATCATAACTTACATAACTTACATAATAC--ATAA
24240198 ATATATA
1 ATATATA
24240205 ACTTATTATA
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
42 6 0.13
43 29 0.63
44 11 0.24
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.39
Consensus pattern (43 bp):
ATATATATTATATCATAACTTACATAACTTACATAATACATAA
Found at i:24240247 original size:28 final size:24
Alignment explanation
Indices: 24240177--24240233 Score: 105
Period size: 24 Copynumber: 2.3 Consensus size: 24
24240167 CATAACTTAC
24240177 ATAACTTAATTATACTTATAAATAT
1 ATAACTT-ATTATACTTATAAATAT
24240202 ATAACTTATTATACTTATAAATAT
1 ATAACTTATTATACTTATAAATAT
24240226 ATAACTTA
1 ATAACTTA
24240234 CTTGTGTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 25 0.78
25 7 0.22
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (24 bp):
ATAACTTATTATACTTATAAATAT
Found at i:24246165 original size:49 final size:49
Alignment explanation
Indices: 24246109--24246762 Score: 1037
Period size: 49 Copynumber: 13.6 Consensus size: 49
24246099 TATTTGAATA
*
24246109 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
24246158 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
24246207 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
24246256 AATGTGAAAGTG--TATATATGTGATAAGGCCAAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
24246303 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
24246352 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGACCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
24246401 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
24246450 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
24246497 AATGTGAAAGTATATATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
24246546 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
24246595 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
24246642 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
* * * *
24246689 AATGTGAAAGTG--TATATATGTGA-CAGGACCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGG-CCGAATGGCCGATGTGATG
*
24246736 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
24246763 TCCCGAAGGG
Statistics
Matches: 573, Mismatches: 24, Indels: 17
0.93 0.04 0.03
Matches are distributed among these distances:
46 3 0.01
47 224 0.39
48 3 0.01
49 343 0.60
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
Found at i:24246297 original size:145 final size:146
Alignment explanation
Indices: 24246109--24246762 Score: 1051
Period size: 145 Copynumber: 4.5 Consensus size: 146
24246099 TATTTGAATA
24246109 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
24246174 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
65 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
24246239 TAATGGCCGATGTGATG
130 GAATGGCCGATGTGATG
*
24246256 AATGTGAAAGTG-TATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
24246320 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCG
66 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCG
*
24246385 AATGACCGATGTGATG
131 AATGGCCGATGTGATG
* *
24246401 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
24246464 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGTGATAAGGCC
65 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
24246529 GAATGGCCGATGTGATG
130 GAATGGCCGATGTGATG
* *
24246546 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * *
24246609 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
65 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
24246672 TAATGGCCGATGTGATG
130 GAATGGCCGATGTGATG
* * * *
24246689 AATGTGAAAGTG-TATATATGTGA-CAGGACCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 AATGTGAAAGTGATATATATGTGATAAGG-CCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
24246752 -A-ATGTGATAAG
65 TATATGTGATAAG
24246763 TCCCGAAGGG
Statistics
Matches: 484, Mismatches: 18, Indels: 16
0.93 0.03 0.03
Matches are distributed among these distances:
140 3 0.01
141 47 0.10
142 1 0.00
143 48 0.10
145 328 0.68
147 57 0.12
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (146 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCG
AATGGCCGATGTGATG
Found at i:24246438 original size:194 final size:194
Alignment explanation
Indices: 24246109--24246762 Score: 1133
Period size: 194 Copynumber: 3.4 Consensus size: 194
24246099 TATTTGAATA
24246109 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
24246174 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
66 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
24246239 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATG
131 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATG
24246303 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
24246368 TATATGTGATAAGGCCGAATGACCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
66 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
24246433 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
131 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATG
* *
24246497 AATGTGAAAGTATATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
24246562 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
66 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * *
24246625 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATG
* * * *
24246689 AATGTGAAAGTG--TATATATGTGA-CAGGACCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 AATGTGAAAGTGTATATATATGTGATAAGG-CCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
24246751 A-A-ATGTGATAAG
65 ATATATGTGATAAG
24246763 TCCCGAAGGG
Statistics
Matches: 443, Mismatches: 16, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
188 10 0.02
189 4 0.01
190 42 0.09
192 90 0.20
194 297 0.67
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (194 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATG
Found at i:24250390 original size:21 final size:21
Alignment explanation
Indices: 24250366--24250415 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
24250356 CTACAACTTA
24250366 AAGCAGAGGCAGCAACGAGGG
1 AAGCAGAGGCAGCAACGAGGG
* **
24250387 AAGCAAAGGCAGCAGTGAGGG
1 AAGCAGAGGCAGCAACGAGGG
24250408 AAGCAGAG
1 AAGCAGAG
24250416 CAGAGCAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.40, C:0.16, G:0.42, T:0.02
Consensus pattern (21 bp):
AAGCAGAGGCAGCAACGAGGG
Found at i:24250856 original size:43 final size:41
Alignment explanation
Indices: 24250721--24251066 Score: 238
Period size: 43 Copynumber: 8.2 Consensus size: 41
24250711 TACTTTTAAT
* * *
24250721 GGCGTTTGTGATAAAAGCACCGCTAAAGGT-ACTATTCTTTAGT
1 GGCGTTTGTGATAAAA-CGCCGCTAAAGGTCA-TGTTC-TTAGC
* * *
24250764 GGCGTTTGTGAAAAAAACACCGCTAAAAGTCATGCTT-TATAGC
1 GGCGTTTGTG-ATAAAACGCCGCTAAAGGTCATG-TTCT-TAGC
** *
24250807 AACGTTTGTTTG-TAAAATGCCGCTAAAGGTCATGTTCTTCAGC
1 GGCGTTTG--TGATAAAACGCCGCTAAAGGTCATGTTCTT-AGC
* *
24250850 GGCGTTTGTGATAAAAGCGCCGATAAAGGACATGTTCTATAGC
1 GGCGTTTGTGATAAAA-CGCCGCTAAAGGTCATGTTCT-TAGC
* * * * *
24250893 AGCATTTGTAAAAAAAACGCCGCTAAAGGGCATGTTCTTTAGC
1 GGCGTTTGT-GATAAAACGCCGCTAAAGGTCATGTTC-TTAGC
* * *
24250936 GGGGTTTGTGATAAAAGCGTCGCTAAAGTTCATGTTC-T---
1 GGCGTTTGTGATAAAA-CGCCGCTAAAGGTCATGTTCTTAGC
* *
24250974 GGCATTTGTGATAAAAGCGCCGCTAAAGGTCATGTTTTATAGC
1 GGCGTTTGTGATAAAA-CGCCGCTAAAGGTCATGTTCT-TAGC
* * * * *
24251017 AGCTTTTGTGGGTAAAGCACCGCTAAAGGTCATGTTCTTTAGC
1 GGCGTTTGT-GATAAAACGCCGCTAAAGGTCATGTTC-TTAGC
*
24251060 GGTGTTT
1 GGCGTTT
24251067 TTTTCACATA
Statistics
Matches: 239, Mismatches: 43, Indels: 42
0.74 0.13 0.13
Matches are distributed among these distances:
38 32 0.13
40 1 0.00
41 3 0.01
42 14 0.06
43 166 0.69
44 21 0.09
45 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (41 bp):
GGCGTTTGTGATAAAACGCCGCTAAAGGTCATGTTCTTAGC
Found at i:24250891 original size:86 final size:86
Alignment explanation
Indices: 24250740--24251059 Score: 280
Period size: 86 Copynumber: 3.8 Consensus size: 86
24250730 GATAAAAGCA
* * * * * *
24250740 CCGCTAAAGGT-ACTATTCTTTAGTGGCGTTTGTGAAAAAAACACCGCTAAAAGTCATGCTT-TA
1 CCGCTAAAGGTCA-TGTTCTTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATG-TTCTA
* **** *
24250803 TAGCAACGTTTGTTTGTAAAATG
64 TAGCAACATTTGTAAAAAAAACG
* * *
24250826 CCGCTAAAGGTCATGTTCTTCAGCGGCGTTTGTGATAAAAGCGCCGATAAAGGACATGTTCTATA
1 CCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTCTATA
*
24250891 GCAGCATTTGTAAAAAAAACG
66 GCAACATTTGTAAAAAAAACG
* * * *
24250912 CCGCTAAAGGGCATGTTCTTTAGCGGGGTTTGTGATAAAAGCGTCGCTAAAGTTCATGTTC--T-
1 CCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTCTATA
* * * *
24250974 G--GCATTTGTGATAAAAGCG
66 GCAACATTTGTAAAAAAAACG
* * * * *
24250993 CCGCTAAAGGTCATGTT-TTATAGCAGCTTTTGTGGGT-AAAGCACCGCTAAAGGTCATGTTCTT
1 CCGCTAAAGGTCATGTTCTT-TAGCGGCGTTTGT-GATAAAAGCGCCGCTAAAGGTCATGTTCTA
24251056 TAGC
64 TAGC
24251060 GGTGTTTTTT
Statistics
Matches: 192, Mismatches: 34, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
80 2 0.01
81 62 0.32
82 2 0.01
83 2 0.01
84 2 0.01
85 2 0.01
86 119 0.62
87 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.30
Consensus pattern (86 bp):
CCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTCTATA
GCAACATTTGTAAAAAAAACG
Found at i:24250943 original size:129 final size:123
Alignment explanation
Indices: 24250720--24251066 Score: 342
Period size: 129 Copynumber: 2.8 Consensus size: 123
24250710 GTACTTTTAA
* * * ** *
24250720 TGGCGTTTGTGATAAAAGCACCGCTAAAGGTAC-TATTCTTTAGTGGCGTTTGTGAAAAAAACAC
1 TGGCGTTTGTGATAAAAGCGCCGCTAAAGG-ACATGTTCTATAGCAGCATTTGTGAAAAAAACAC
* * **
24250784 CGCTAAAAGTCATGCTT-TATAGCAACGTTTGTTTG-TAAAATGC-CGCTAAAGGTCATGTTC
65 CGCTAAAGGTCATG-TTCTTTAGCGGCGTTTG--TGATAAAA-GCGCGCTAAAGGTCATGTTC
* *
24250844 TTCAGCGGCGTTTGTGATAAAAGCGCCGATAAAGGACATGTTCTATAGCAGCATTTGTAAAAAAA
1 -T----GGCGTTTGTGATAAAAGCGCCGCTAAAGGACATGTTCTATAGCAGCATTTGTGAAAAAA
* * * *
24250909 ACGCCGCTAAAGGGCATGTTCTTTAGCGGGGTTTGTGATAAAAGCGTCGCTAAAGTTCATGTTC
61 ACACCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGATAAAAGCG-CGCTAAAGGTCATGTTC
* * * * *** *
24250973 TGGCATTTGTGATAAAAGCGCCGCTAAAGGTCATGTTTTATAGCAGCTTTTGTGGGTAAAGCACC
1 TGGCGTTTGTGATAAAAGCGCCGCTAAAGGACATGTTCTATAGCAGCATTTGTGAAAAAAACACC
*
24251038 GCTAAAGGTCATGTTCTTTAGCGGTGTTT
66 GCTAAAGGTCATGTTCTTTAGCGGCGTTT
24251067 TTTTCACATA
Statistics
Matches: 184, Mismatches: 29, Indels: 19
0.79 0.12 0.08
Matches are distributed among these distances:
124 80 0.43
125 1 0.01
127 4 0.02
128 10 0.05
129 89 0.48
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (123 bp):
TGGCGTTTGTGATAAAAGCGCCGCTAAAGGACATGTTCTATAGCAGCATTTGTGAAAAAAACACC
GCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGATAAAAGCGCGCTAAAGGTCATGTTC
Found at i:24252332 original size:25 final size:26
Alignment explanation
Indices: 24252304--24252361 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
24252294 TAATTAGTAT
*
24252304 AAAATATT-AATAATTGAAT-AAATTG
1 AAAAT-TTAAATAATTAAATAAAATTG
24252329 AAAATTTAAATAATTAAATAAAATTG
1 AAAATTTAAATAATTAAATAAAATTG
24252355 -AAATTTA
1 AAAATTTA
24252362 GGAGAAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 2 0.07
25 22 0.73
26 6 0.20
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (26 bp):
AAAATTTAAATAATTAAATAAAATTG
Found at i:24262792 original size:42 final size:41
Alignment explanation
Indices: 24262686--24262805 Score: 127
Period size: 43 Copynumber: 2.9 Consensus size: 41
24262676 GTCTGAGACA
* *
24262686 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGATT-AGATT
*
24262728 TACGTATAAGACCATGTCTGGGACATCA-GCATCGTATCT-GATT
1 T-CGTGTAAGACCATGTCTGGGACA-CAGGCATCG-AT-TAGATT
* * *
24262771 TCGTGTAAGACCCTGTCTGGGATAGAGGCATCGAT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGAT
24262806 ATTGAATTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
41 3 0.05
42 27 0.41
43 31 0.47
44 4 0.06
45 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCGATTAGATT
Found at i:24264374 original size:20 final size:20
Alignment explanation
Indices: 24264336--24264374 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24264326 AACATTACTT
*
24264336 GATAATTCAAAACATTTACA
1 GATAATTCAAAACAATTACA
**
24264356 GATAATTCATGACAATTAC
1 GATAATTCAAAACAATTAC
24264375 TATTCATTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (20 bp):
GATAATTCAAAACAATTACA
Found at i:24271557 original size:46 final size:45
Alignment explanation
Indices: 24271507--24271682 Score: 221
Period size: 46 Copynumber: 3.8 Consensus size: 45
24271497 TGGTTGAGCA
24271507 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** *
24271553 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GAA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
24271600 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
24271646 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24271683 GCGGGTTACA
Statistics
Matches: 113, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 1 0.01
46 69 0.61
47 32 0.28
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:24271665 original size:93 final size:93
Alignment explanation
Indices: 24271506--24271674 Score: 302
Period size: 93 Copynumber: 1.8 Consensus size: 93
24271496 ATGGTTGAGC
* *
24271506 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
24271571 AGTCCGAGTTCGAGAGATGTAACTAGGA
66 AGTCCGAGTTCGAGAGATGTAACTAGGA
* *
24271599 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
24271664 AGTCCGAGTTC
66 AGTCCGAGTTC
24271675 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
AGTCCGAGTTCGAGAGATGTAACTAGGA
Found at i:24283562 original size:29 final size:29
Alignment explanation
Indices: 24283501--24283591 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 29
24283491 TACATACATG
* *
24283501 CATATGGTCCACTAGGCCC-AATCTCATT
1 CATATGGCCCAGTAGGCCCAAATCTCATT
* *
24283529 CATATGTCCCATTAGGCCCAAAT-TGCATT
1 CATATGGCCCAGTAGGCCCAAATCT-CATT
**
24283558 CATATGGCCCAGTAGGCCCAAATCAAATT
1 CATATGGCCCAGTAGGCCCAAATCTCATT
24283587 CATAT
1 CATAT
24283592 TCATGCTTTC
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
28 17 0.32
29 36 0.68
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (29 bp):
CATATGGCCCAGTAGGCCCAAATCTCATT
Found at i:24289545 original size:40 final size:38
Alignment explanation
Indices: 24289482--24289580 Score: 110
Period size: 40 Copynumber: 2.6 Consensus size: 38
24289472 TACGGTACTC
* * * *
24289482 TATGGTGTGCAGGGTCGGATGGGTTGATTTTATCCTCA
1 TATGGTGTGTAGGGTAGGATGGGTCGATTTTATCCCCA
24289520 TATTTGGTGTGTAGGGATAGG-TGGGTCGATTTTATCCCCA
1 TA--TGGTGTGTAGGG-TAGGATGGGTCGATTTTATCCCCA
* *
24289560 TATGGTGTGTTGGGTTGGATG
1 TATGGTGTGTAGGGTAGGATG
24289581 AAGATGGTGT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
37 3 0.06
38 15 0.29
40 30 0.59
41 3 0.06
ACGTcount: A:0.15, C:0.10, G:0.36, T:0.38
Consensus pattern (38 bp):
TATGGTGTGTAGGGTAGGATGGGTCGATTTTATCCCCA
Found at i:24290474 original size:20 final size:21
Alignment explanation
Indices: 24290449--24290487 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
24290439 CAAAGCAAAT
24290449 AAGGGC-ACACGCCCGTGTAA
1 AAGGGCGACACGCCCGTGTAA
24290469 AAGGGCGACACGCCCGTGT
1 AAGGGCGACACGCCCGTGT
24290488 GTCTTCTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.26, C:0.31, G:0.33, T:0.10
Consensus pattern (21 bp):
AAGGGCGACACGCCCGTGTAA
Found at i:24291778 original size:48 final size:48
Alignment explanation
Indices: 24291726--24292044 Score: 388
Period size: 48 Copynumber: 6.6 Consensus size: 48
24291716 ATGTCGAGGT
* * * * * *
24291726 CGATGCCATGTCCCAGACATGGTCTTAAACTGGCTTTCATAATATCGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGC
*
24291774 CGATGCCATGTTCCAAACATGGTCTTACACTGCCTCTCATAACATTGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGC
* * * * *
24291822 CAATGCCATGATCAAAACATGGTCTTACATTGGCTCTCATAACATTTC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGC
* * * **
24291870 CGATGCAATGTTCCAATCATGGTCTTACACTGGCTCTTATAACATTAT
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGC
24291918 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGC
* * *** *
24291966 TGATGCCATGTTTCAAAACATGGTCTTACACT-GCTCTCATAGTGTGGC
1 CGATGCCATG-TTCCAAACATGGTCTTACACTGGCTCTCATAACATTGC
* * *
24292014 CAATGTCATGTCCCAAACATGGTCTTACACT
1 CGATGCCATGTTCCAAACATGGTCTTACACT
24292045 AACACACATA
Statistics
Matches: 232, Mismatches: 38, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
47 19 0.08
48 193 0.83
49 20 0.09
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGC
Found at i:24298939 original size:54 final size:54
Alignment explanation
Indices: 24298761--24298962 Score: 246
Period size: 54 Copynumber: 3.7 Consensus size: 54
24298751 ACTTACCATA
* * *
24298761 GCCATGTCTTGACATGGTCTTACGTGGTATCCTTACCTTAT-AAACTCATCAAT
1 GCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATAAAACTCATCAAT
* ** ** * *
24298814 GCCATGCCTTGGCATGGTCTTTTATGGGA-CCTTTTCCTTATAGTAACTCATCAAT
1 GCCATGCCTTGACATGGTCTTACATGATATCC-TTACCTTATA-AAACTCATCAAT
* * *
24298869 GCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAAAACTTATCAAT
1 GCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATAAAACTCATCAAT
*
24298923 GCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTA
1 GCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTA
24298963 CCAAATGCCA
Statistics
Matches: 124, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
52 2 0.02
53 31 0.25
54 47 0.38
55 42 0.34
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.37
Consensus pattern (54 bp):
GCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATAAAACTCATCAAT
Found at i:24298990 original size:47 final size:47
Alignment explanation
Indices: 24298935--24299048 Score: 201
Period size: 47 Copynumber: 2.4 Consensus size: 47
24298925 CATGCCTTGG
*
24298935 CATGGTCTTACATGATATCCTTACCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTACCTTACCAAATGCCATGTTCCAAA
*
24298982 CATGGTCTTACATGGTATCCTTGCCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTACCTTACCAAATGCCATGTTCCAAA
*
24299029 CATGGTTTTACATGGTATCC
1 CATGGTCTTACATGGTATCC
24299049 CTGTCTTAGT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.33
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTACCTTACCAAATGCCATGTTCCAAA
Found at i:24299145 original size:47 final size:45
Alignment explanation
Indices: 24299060--24299180 Score: 118
Period size: 45 Copynumber: 2.6 Consensus size: 45
24299050 TGTCTTAGTG
** ** * * *
24299060 CCAATGCCACATCTTGATGTGGTCTTACATGGAGTCCTTAATCAATG
1 CCAATGCCATGTCTTGACATGGTCTTACACGGAGTCCTT--GCAATA
* **
24299107 CCGATGCCATGTCTTGACATGGTCTTACAC-GAGATCCTTGCCTTA
1 CCAATGCCATGTCTTGACATGGTCTTACACGGAG-TCCTTGCAATA
24299152 CCAATGCCATGTCTTGACATGGTCTTACA
1 CCAATGCCATGTCTTGACATGGTCTTACA
24299181 TGGTATCCTT
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
45 30 0.48
46 3 0.05
47 29 0.47
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.31
Consensus pattern (45 bp):
CCAATGCCATGTCTTGACATGGTCTTACACGGAGTCCTTGCAATA
Found at i:24306844 original size:48 final size:48
Alignment explanation
Indices: 24306727--24307044 Score: 336
Period size: 48 Copynumber: 6.6 Consensus size: 48
24306717 GGTAATTTAC
* * ** ** *
24306727 CGATGCCATG-TCTCAGACATGGTCTTACACTGG-TCACATGTCAAGGC
1 CGATGCCATGTTC-CAAACATGGTCTTACACTGGCTCTCATAACATTGT
* * *
24306774 CGATGCCATGTCCCAAATATGGTCTTACACTGGCTCTGATAACATTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGT
**
24306822 CGATGCCATGTTATAAACATGGTCTTACACTGGCTCTCATAACATTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGT
* * * *
24306870 CGATGTCATGCTCCAAACATGATCTTACACTGGCTCTCATAACATTGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGT
* *
24306918 CGATGCCATGTTCCAAACAAGGTCTTATACTGGCTCTCATAACATTG-
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGT
** * * ** *
24306965 CTGATGATATGTTCAAAACATGGTCTTACACTGGCTCACATAATGTGGT
1 C-GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGT
* * * *
24307014 CAATGCCATATCCCAGACATGGTCTTACACT
1 CGATGCCATGTTCCAAACATGGTCTTACACT
24307045 AGCACACATA
Statistics
Matches: 225, Mismatches: 42, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
47 29 0.13
48 195 0.87
49 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGT
Found at i:24306913 original size:25 final size:24
Alignment explanation
Indices: 24306837--24306914 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 24
24306827 CCATGTTATA
24306837 AACATGGTCTTACACTGGCTCTCAT
1 AACAT-GTCTTACACTGGCTCTCAT
24306862 AACATTGTCGATGT-CA-T-GCTC-CA-
1 AACA-TGTC--T-TACACTGGCTCTCAT
24306885 AACATGATCTTACACTGGCTCTCAT
1 AACATG-TCTTACACTGGCTCTCAT
24306910 AACAT
1 AACAT
24306915 TGCCGATGCC
Statistics
Matches: 43, Mismatches: 0, Indels: 20
0.68 0.00 0.32
Matches are distributed among these distances:
20 1 0.02
21 3 0.07
22 3 0.07
23 10 0.23
24 4 0.09
25 16 0.37
26 2 0.05
27 3 0.07
28 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (24 bp):
AACATGTCTTACACTGGCTCTCAT
Found at i:24316065 original size:65 final size:65
Alignment explanation
Indices: 24315961--24316093 Score: 266
Period size: 65 Copynumber: 2.0 Consensus size: 65
24315951 CCTAAACTTT
24315961 CTTGATATAAAATTCTAAATAACTTAAAATATCCAAAATTTGAAATAAATAAATAAATAATAAAA
1 CTTGATATAAAATTCTAAATAACTTAAAATATCCAAAATTTGAAATAAATAAATAAATAATAAAA
24316026 CTTGATATAAAATTCTAAATAACTTAAAATATCCAAAATTTGAAATAAATAAATAAATAATAAAA
1 CTTGATATAAAATTCTAAATAACTTAAAATATCCAAAATTTGAAATAAATAAATAAATAATAAAA
24316091 CTT
1 CTT
24316094 AATCAATGCA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 68 1.00
ACGTcount: A:0.57, C:0.08, G:0.03, T:0.32
Consensus pattern (65 bp):
CTTGATATAAAATTCTAAATAACTTAAAATATCCAAAATTTGAAATAAATAAATAAATAATAAAA
Found at i:24320673 original size:91 final size:90
Alignment explanation
Indices: 24320562--24320759 Score: 233
Period size: 91 Copynumber: 2.2 Consensus size: 90
24320552 GTAATTAGGC
* * * *
24320562 TTTTTTTT--ACTTAATTAGATACTTGAACTTTTAAATTACACCAAAAAGCTC-TCAAACTTTTT
1 TTTTTTTTACACTCAATTAGATACTTGAACTGTCAAAATACACCAAAAAGCTCTTCAAACTTTTT
* *
24320624 CAAAGAAAACAATTAAGC-CTTTGTTTT
66 CAAA-AAAACAATAAAGCTC-TT-TCTT
** * *
24320651 TTTTTTTTACACTCAATTAGATACTTGAACTGTCAAAATACATTAAAAAGGTCTTCAAATTTTTT
1 TTTTTTTTACACTCAATTAGATACTTGAACTGTCAAAATACACCAAAAAGCTCTTCAAACTTTTT
*
24320716 CAAAAAAGCAATAAAGCTCTTTCTT
66 CAAAAAAACAATAAAGCTCTTTCTT
*
24320741 TGTTTTTTACACTCAATTA
1 TTTTTTTTACACTCAATTA
24320760 TTAATATGCA
Statistics
Matches: 93, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
89 8 0.09
90 21 0.23
91 49 0.53
92 15 0.16
ACGTcount: A:0.36, C:0.16, G:0.07, T:0.41
Consensus pattern (90 bp):
TTTTTTTTACACTCAATTAGATACTTGAACTGTCAAAATACACCAAAAAGCTCTTCAAACTTTTT
CAAAAAAACAATAAAGCTCTTTCTT
Found at i:24320908 original size:19 final size:18
Alignment explanation
Indices: 24320875--24320939 Score: 51
Period size: 19 Copynumber: 3.4 Consensus size: 18
24320865 ACGATAAAAA
*
24320875 ATAAAAATCAATAAAAGTT
1 ATAAAAAT-GATAAAAGTT
*
24320894 ATAAAAATGATTAAA-TT
1 ATAAAAATGATAAAAGTT
* *
24320911 TTAATAAAATAGAAAAAAGTT
1 AT-A-AAAAT-GATAAAAGTT
24320932 ATAAAAAT
1 ATAAAAAT
24320940 AGTAAAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
17 3 0.08
18 6 0.17
19 18 0.50
20 6 0.17
21 3 0.08
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (18 bp):
ATAAAAATGATAAAAGTT
Found at i:24320937 original size:18 final size:18
Alignment explanation
Indices: 24320914--24321072 Score: 63
Period size: 19 Copynumber: 8.3 Consensus size: 18
24320904 TTAAATTTTA
*
24320914 ATAAAATAG-AAAAAAGTT
1 ATAAAATAGTAAAAAA-AT
24320932 ATAAAAATAGTAAAAAAAT
1 AT-AAAATAGTAAAAAAAT
** *
24320951 ATAAAATTTTACAAAAAT
1 ATAAAATAGTAAAAAAAT
*
24320969 CATAAAATA-TATAGAAATAT
1 -ATAAAATAGTA-A-AAAAAT
* *
24320989 AGAAAAATA-TATAAAAATTT
1 A-TAAAATAGTA-AAAAA-AT
** * *
24321009 ATAATGTCGTAAGAAAAT
1 ATAAAATAGTAAAAAAAT
* *
24321027 GATAAAAAATGTAAAGAAAT
1 -ATAAAATA-GTAAAAAAAT
*
24321047 ATAAAATTCGTAAAAAAATT
1 ATAAAA-TAGTAAAAAAA-T
24321067 ATAAAA
1 ATAAAA
24321073 ATTATCATAT
Statistics
Matches: 104, Mismatches: 25, Indels: 22
0.69 0.17 0.15
Matches are distributed among these distances:
18 18 0.17
19 46 0.44
20 40 0.38
ACGTcount: A:0.64, C:0.03, G:0.08, T:0.26
Consensus pattern (18 bp):
ATAAAATAGTAAAAAAAT
Found at i:24320953 original size:19 final size:19
Alignment explanation
Indices: 24320916--24321074 Score: 76
Period size: 20 Copynumber: 8.3 Consensus size: 19
24320906 AAATTTTAAT
*
24320916 AAAATAG-AAAAAAGTTATA
1 AAAATAGTAAAAAA-ATATA
24320935 AAAATAGTAAAAAAATAT-
1 AAAATAGTAAAAAAATATA
** *
24320953 AAAATTTTACAAAAATCATA
1 AAAATAGTAAAAAAAT-ATA
* * *
24320973 AAATATA-TAGAAATATAGA
1 AAA-ATAGTAAAAAAATATA
* *
24320992 AAAATA-TATAAAAATTTA
1 AAAATAGTAAAAAAATATA
** * *
24321010 TAATGTCGTAAGAAAATGATA
1 -AAAATAGTAAAAAAAT-ATA
*
24321031 AAAA-ATGTAAAGAAATATA
1 AAAATA-GTAAAAAAATATA
* *
24321050 AAATTCGTAAAAAAATTATA
1 AAAATAGTAAAAAAA-TATA
24321070 AAAAT
1 AAAAT
24321075 TATCATATCA
Statistics
Matches: 103, Mismatches: 27, Indels: 19
0.69 0.18 0.13
Matches are distributed among these distances:
18 24 0.23
19 34 0.33
20 41 0.40
21 4 0.04
ACGTcount: A:0.64, C:0.03, G:0.08, T:0.26
Consensus pattern (19 bp):
AAAATAGTAAAAAAATATA
Found at i:24320988 original size:10 final size:10
Alignment explanation
Indices: 24320931--24321012 Score: 64
Period size: 10 Copynumber: 8.5 Consensus size: 10
24320921 AGAAAAAAGT
24320931 TATAAAAATA
1 TATAAAAATA
24320941 GTA-AAAAA-A
1 -TATAAAAATA
* *
24320950 TATAAAATTT
1 TATAAAAATA
*
24320960 TACAAAAAT-
1 TATAAAAATA
*
24320969 CAT-AAAATA
1 TATAAAAATA
*
24320978 TATAGAAATA
1 TATAAAAATA
*
24320988 TAGAAAAATA
1 TATAAAAATA
*
24320998 TATAAAAATT
1 TATAAAAATA
24321008 TATAA
1 TATAA
24321013 TGTCGTAAGA
Statistics
Matches: 55, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
8 7 0.13
9 8 0.15
10 38 0.69
11 2 0.04
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (10 bp):
TATAAAAATA
Found at i:24321034 original size:39 final size:40
Alignment explanation
Indices: 24320991--24321074 Score: 93
Period size: 39 Copynumber: 2.1 Consensus size: 40
24320981 AGAAATATAG
* * *
24320991 AAAAATATAT-AA-AAATTTATAATGTCGTAAGAAAATGAT
1 AAAAATATATAAAGAAATATAAAAT-TCGTAAAAAAATGAT
* *
24321030 AAAAA-ATGTAAAGAAATATAAAATTCGTAAAAAAATTAT
1 AAAAATATATAAAGAAATATAAAATTCGTAAAAAAATGAT
24321069 AAAAAT
1 AAAAAT
24321075 TATCATATCA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
38 3 0.08
39 25 0.68
40 9 0.24
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.27
Consensus pattern (40 bp):
AAAAATATATAAAGAAATATAAAATTCGTAAAAAAATGAT
Found at i:24321265 original size:19 final size:20
Alignment explanation
Indices: 24321243--24321299 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
24321233 TGATGCATTC
**
24321243 TATAAATTTTTATGA-TTTT
1 TATAAATTTTTACAATTTTT
*
24321262 TATAAATTTATACAATTTTT
1 TATAAATTTTTACAATTTTT
* *
24321282 TATATATTTTTACTATTT
1 TATAAATTTTTACAATTT
24321300 ATATATATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
19 12 0.39
20 19 0.61
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (20 bp):
TATAAATTTTTACAATTTTT
Found at i:24321270 original size:10 final size:10
Alignment explanation
Indices: 24321243--24321293 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 10
24321233 TGATGCATTC
24321243 TATAAATTTT
1 TATAAATTTT
*
24321253 TAT-GATTTT
1 TATAAATTTT
*
24321262 TATAAATTTA
1 TATAAATTTT
* *
24321272 TACAATTTTT
1 TATAAATTTT
*
24321282 TATATATTTT
1 TATAAATTTT
24321292 TA
1 TA
24321294 CTATTTATAT
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
9 8 0.26
10 23 0.74
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (10 bp):
TATAAATTTT
Found at i:24321299 original size:20 final size:20
Alignment explanation
Indices: 24321258--24321310 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
24321248 ATTTTTATGA
*
24321258 TTTTTATAAATTTATACAAT
1 TTTTTATATATTTATACAAT
* *
24321278 TTTTTATATATTTTTACTAT
1 TTTTTATATATTTATACAAT
*
24321298 TTATATATATATT
1 TT-TTTATATATT
24321311 CTAATTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 19 0.68
21 9 0.32
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTTATATATTTATACAAT
Found at i:24321368 original size:9 final size:9
Alignment explanation
Indices: 24321247--24321399 Score: 70
Period size: 9 Copynumber: 17.0 Consensus size: 9
24321237 GCATTCTATA
24321247 AATTTTTAT
1 AATTTTTAT
*
24321256 GATTTTTAT
1 AATTTTTAT
* *
24321265 AAATTTATAC
1 -AATTTTTAT
24321275 AATTTTTTAT
1 AA-TTTTTAT
24321285 ATATTTTTACT
1 A-ATTTTTA-T
*
24321296 -ATTTATAT
1 AATTTTTAT
* *
24321304 -ATATATTCT
1 AAT-TTTTAT
24321313 AA-TTTT-T
1 AATTTTTAT
24321320 AATTTTTA-
1 AATTTTTAT
*
24321328 ATTTTTTA-
1 AATTTTTAT
24321336 AATTTTTATT
1 AATTTTTA-T
* *
24321346 AAAGTTTAAT
1 -AATTTTTAT
24321356 AATTTTTAT
1 AATTTTTAT
24321365 AATTTTTATT
1 AATTTTTA-T
* *
24321375 GATTATTAT
1 AATTTTTAT
*
24321384 --TTTTTGT
1 AATTTTTAT
24321391 AATTTTTAT
1 AATTTTTAT
24321400 CACATGTGAC
Statistics
Matches: 108, Mismatches: 22, Indels: 28
0.68 0.14 0.18
Matches are distributed among these distances:
7 8 0.07
8 24 0.22
9 41 0.38
10 27 0.25
11 8 0.07
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (9 bp):
AATTTTTAT
Found at i:24322929 original size:96 final size:96
Alignment explanation
Indices: 24322739--24322977 Score: 388
Period size: 96 Copynumber: 2.5 Consensus size: 96
24322729 GCCTTGTCCT
* * * *
24322739 ACAACGGAACCCCAATACTGTTCTCTTAATGAAGTGTCCTATGAATACACCGAAGATTCTGAGAC
1 ACAAAGGAACCTCAGTATTGTTCTCTTAATGAAGTGTCCTATGAATACACCGAAGATTCTGAGAC
* *
24322804 CAGGCTTGACGTGGGGCTTCCTGGTTGTGAA
66 CAGGCTTGACGTGAGGCTTCCTGGCTGTGAA
* **
24322835 ACAAAGGAGCCTCAGTATTGTTCTCTTAATGAAGTGTCCTATGAATACATGGAAGATTCTGAGAC
1 ACAAAGGAACCTCAGTATTGTTCTCTTAATGAAGTGTCCTATGAATACACCGAAGATTCTGAGAC
*
24322900 CAGGCTTGACGTGAGGCTTTCTGGCTGTGAA
66 CAGGCTTGACGTGAGGCTTCCTGGCTGTGAA
24322931 ACAAAGGAACCTCAGTATTGTTCTCTTAATGAAGTGTCCTATGAATA
1 ACAAAGGAACCTCAGTATTGTTCTCTTAATGAAGTGTCCTATGAATA
24322978 TAGGGAAAAT
Statistics
Matches: 132, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 132 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (96 bp):
ACAAAGGAACCTCAGTATTGTTCTCTTAATGAAGTGTCCTATGAATACACCGAAGATTCTGAGAC
CAGGCTTGACGTGAGGCTTCCTGGCTGTGAA
Found at i:24326174 original size:10 final size:10
Alignment explanation
Indices: 24326141--24326184 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
24326131 AAAAGATTAA
24326141 TTTTTATAAT
1 TTTTTATAAT
* *
24326151 ATTTATATATT
1 -TTTTTATAAT
24326162 TTTTTATAAT
1 TTTTTATAAT
24326172 TTTTTATAAT
1 TTTTTATAAT
24326182 TTT
1 TTT
24326185 AAAAAATTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 21 0.72
11 8 0.28
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:24329413 original size:29 final size:30
Alignment explanation
Indices: 24329354--24329414 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 30
24329344 ATTTCAACAC
*
24329354 TAATCAATGCACAGTTTTTAGGAATTCTAT
1 TAATCAATGCACAGATTTTAGGAATTCTAT
*
24329384 TAATCAATGCACA-ATTTTAGGAATTTTAT
1 TAATCAATGCACAGATTTTAGGAATTCTAT
24329413 TA
1 TA
24329415 TGACTATGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 16 0.55
30 13 0.45
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.41
Consensus pattern (30 bp):
TAATCAATGCACAGATTTTAGGAATTCTAT
Found at i:24329959 original size:3 final size:3
Alignment explanation
Indices: 24329951--24329981 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
24329941 AATGATCACT
24329951 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
24329982 GTCCTTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:24331034 original size:37 final size:38
Alignment explanation
Indices: 24330992--24331067 Score: 136
Period size: 37 Copynumber: 2.0 Consensus size: 38
24330982 AAATCACCGA
*
24330992 ATATGTTTGTACGATGATTTC-AAATCTAAATAAAGGC
1 ATATGTTTGTACGATGATTTCAAAATCCAAATAAAGGC
24331029 ATATGTTTGTACGATGATTTCAAAATCCAAATAAAGGC
1 ATATGTTTGTACGATGATTTCAAAATCCAAATAAAGGC
24331067 A
1 A
24331068 CTAACTGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 21 0.57
38 16 0.43
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (38 bp):
ATATGTTTGTACGATGATTTCAAAATCCAAATAAAGGC
Found at i:24334401 original size:25 final size:25
Alignment explanation
Indices: 24334367--24334416 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
24334357 CGCATGTGAT
*
24334367 TAATGTGTGGATTAGGTGGTTAGGC
1 TAATGTGTGGATTAAGTGGTTAGGC
24334392 TAATGTGTGGATTAAGTGGTTAGGC
1 TAATGTGTGGATTAAGTGGTTAGGC
24334417 AGTTAGTGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.04, G:0.38, T:0.36
Consensus pattern (25 bp):
TAATGTGTGGATTAAGTGGTTAGGC
Found at i:24340351 original size:16 final size:15
Alignment explanation
Indices: 24340327--24340365 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
24340317 TAAACGAAAC
*
24340327 AGAAA-AAAAAAGAA
1 AGAAAGAAAAAAAAA
24340341 AGAAAAGAAAAAAAAA
1 AG-AAAGAAAAAAAAA
24340357 AGAAAGAAA
1 AGAAAGAAA
24340366 GAAGGAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 2 0.09
15 10 0.45
16 10 0.45
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AGAAAGAAAAAAAAA
Found at i:24343137 original size:20 final size:20
Alignment explanation
Indices: 24343100--24343141 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
24343090 ATTCATTTTT
**
24343100 ATTCATATAAACTGTAATTC
1 ATTCATATAAACAATAATTC
*
24343120 ATTCATATAACCAATAATTC
1 ATTCATATAAACAATAATTC
24343140 AT
1 AT
24343142 AAGTAATAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.38
Consensus pattern (20 bp):
ATTCATATAAACAATAATTC
Found at i:24343175 original size:20 final size:20
Alignment explanation
Indices: 24343152--24343226 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
24343142 AAGTAATAAT
* *
24343152 AGTAATTTGTCCGTATCAAC
1 AGTAATTTATCCATATCAAC
* *
24343172 AGTAATTTATTCATTTCAAC
1 AGTAATTTATCCATATCAAC
* *
24343192 AGTAATTCATCCATTTCAAC
1 AGTAATTTATCCATATCAAC
* *
24343212 A-TAACTTATTCATAT
1 AGTAATTTATCCATAT
24343227 GATCGGTAAG
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
19 10 0.22
20 35 0.78
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.40
Consensus pattern (20 bp):
AGTAATTTATCCATATCAAC
Found at i:24343433 original size:22 final size:22
Alignment explanation
Indices: 24343380--24343492 Score: 97
Period size: 23 Copynumber: 5.0 Consensus size: 22
24343370 AGGTAATAAT
*
24343380 TAGTAAGCTCTATTGAGCTGAAA
1 TAGTAAGCTCTATCGAGCTG-AA
* *
24343403 TGGTAAGCTCTATCGAGTTGAA
1 TAGTAAGCTCTATCGAGCTGAA
*
24343425 TAGTAAGCTC-ATACAAGCTGAA
1 TAGTAAGCTCTAT-CGAGCTGAA
24343447 TCAGTAAGCTCTAAT-GAGCTGAAAA
1 T-AGTAAGCTCT-ATCGAGCTG--AA
*
24343472 CAGTAAGCTCT-TACGAGCTGA
1 TAGTAAGCTCTAT-CGAGCTGA
24343493 TATATATGTA
Statistics
Matches: 74, Mismatches: 8, Indels: 17
0.75 0.08 0.17
Matches are distributed among these distances:
21 2 0.03
22 21 0.28
23 31 0.42
24 16 0.22
25 4 0.05
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.27
Consensus pattern (22 bp):
TAGTAAGCTCTATCGAGCTGAA
Found at i:24346251 original size:46 final size:47
Alignment explanation
Indices: 24346104--24346378 Score: 219
Period size: 46 Copynumber: 5.8 Consensus size: 47
24346094 TTATTTGTGT
* * * * *
24346104 GCTAGTGTAAGACATGTCTGAGACATACATTGGCCAC-ATTATG-AGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTAGA
* * * * *
24346150 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGAT-AAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGA
24346198 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGA
* * *
24346244 GCCAGTGTAAGACACT-TCTGGGATATGCATCGG-CTATGAGATGT---
1 GCTAGTGTAAGACA-TGTCTGGGACATGCATCGGCCT-CGAGATGTAGA
* * *
24346288 GTTAGTGTAAGACTATGTCTGGGACATGACATCGG-CACGAATATGTGAGA
1 GCTAGTGTAAGAC-ATGTCTGGGACATG-CATCGGCCTCG-AGATGT-AGA
* *
24346338 ACTAGTGTAAGACTATGTCTGGGACATGACGTCGGCCTCGA
1 GCTAGTGTAAGAC-ATGTCTGGGACATG-CATCGGCCTCGA
24346379 TTTTGATAGT
Statistics
Matches: 186, Mismatches: 27, Indels: 28
0.77 0.11 0.12
Matches are distributed among these distances:
44 12 0.06
45 14 0.08
46 73 0.39
47 29 0.16
48 21 0.11
49 1 0.01
50 33 0.18
51 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGA
Found at i:24353889 original size:47 final size:47
Alignment explanation
Indices: 24353767--24354069 Score: 428
Period size: 47 Copynumber: 6.4 Consensus size: 47
24353757 ATTGATGTAC
* * *
24353767 AAGTATATATATGTGATAGGGCCGAGTGG-CAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * *
24353813 AAGTATATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
1 AAG--TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * *
24353862 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
24353909 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
24353956 AAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
24354003 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
24354050 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
24354070 TCCCGAAGGG
Statistics
Matches: 237, Mismatches: 17, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
46 3 0.01
47 189 0.80
48 26 0.11
49 19 0.08
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:24367752 original size:2 final size:2
Alignment explanation
Indices: 24367745--24367795 Score: 66
Period size: 2 Copynumber: 25.5 Consensus size: 2
24367735 AACGGGATTT
* * * *
24367745 TC TC TC TC TC TC TC TC TC TC TC AC TC AC TC AC TC AC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
24367787 TC TC TC TC T
1 TC TC TC TC T
24367796 TGTCGAAACT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.08, C:0.49, G:0.00, T:0.43
Consensus pattern (2 bp):
TC
Found at i:24373191 original size:43 final size:43
Alignment explanation
Indices: 24373034--24373197 Score: 174
Period size: 43 Copynumber: 3.8 Consensus size: 43
24373024 AGCTCGTACA
* ** * *
24373034 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACAT-ATCG
1 ATGCCAATATCCCAGACATGGTCTTACACATAATCAAATAAT-G
* **
24373076 ATGCCGATATCCCAG-CTATGGTCTTACACGA-AATCAAATAACA
1 ATGCCAATATCCCAGAC-ATGGTCTTACAC-ATAATCAAATAATG
* *
24373119 ATGCCAATGTCCCAGACATGGTCTTACACATAATCATATAATG
1 ATGCCAATATCCCAGACATGGTCTTACACATAATCAAATAATG
*
24373162 ATGCCAATGTCCCAGACATGGTCTTACACATAATCA
1 ATGCCAATATCCCAGACATGGTCTTACACATAATCA
24373198 CATCTCGTTA
Statistics
Matches: 104, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
42 6 0.06
43 96 0.92
44 2 0.02
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACACATAATCAAATAATG
Found at i:24373197 original size:86 final size:85
Alignment explanation
Indices: 24373031--24373190 Score: 207
Period size: 86 Copynumber: 1.9 Consensus size: 85
24373021 TATAGCTCGT
* ** * *
24373031 ACAATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCCGATATCCCAGCTATG
1 ACAATGCCATATCCCAGACATGGTCTTACACATAATCACATATCGATGCCAATATCCCAGCTATG
24373096 GTCTTACACGAAATCAAATA
66 GTCTTACACGAAATCAAATA
* * *
24373116 ACAATGCCAATGTCCCAGACATGGTCTTACACATAATCATATAAT-GATGCCAATGTCCCAGAC-
1 ACAATGCC-ATATCCCAGACATGGTCTTACACATAATCACAT-ATCGATGCCAATATCCCAG-CT
24373179 ATGGTCTTACAC
63 ATGGTCTTACAC
24373191 ATAATCACAT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
85 8 0.12
86 53 0.83
87 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (85 bp):
ACAATGCCATATCCCAGACATGGTCTTACACATAATCACATATCGATGCCAATATCCCAGCTATG
GTCTTACACGAAATCAAATA
Found at i:24373717 original size:29 final size:28
Alignment explanation
Indices: 24373674--24373733 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
24373664 CTTTCATTTA
* * *
24373674 TTTCACATTTCAACCCCTCAATTTACACT
1 TTTCACAATTAAACCCCT-AATATACACT
*
24373703 TTTCACAATTAAACCCCTAATATACATT
1 TTTCACAATTAAACCCCTAATATACACT
24373731 TTT
1 TTT
24373734 ACTCAAAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 11 0.41
29 16 0.59
ACGTcount: A:0.32, C:0.28, G:0.00, T:0.40
Consensus pattern (28 bp):
TTTCACAATTAAACCCCTAATATACACT
Found at i:24381991 original size:22 final size:22
Alignment explanation
Indices: 24381963--24382084 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
24381953 TTCCACATCC
24381963 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
24381985 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
24382009 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
24382032 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
24382056 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
24382079 ATCACA
1 ATCACA
24382085 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:24381998 original size:47 final size:47
Alignment explanation
Indices: 24381935--24382580 Score: 942
Period size: 47 Copynumber: 13.6 Consensus size: 47
24381925 CCCTTCGGGA
* * *
24381935 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
24381982 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
24382029 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
24382076 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
24382123 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
24382170 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
24382217 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
24382264 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
24382313 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
24382360 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
24382409 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
24382456 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
24382505 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
24382554 CCTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
24382581 TATTCAAATA
Statistics
Matches: 568, Mismatches: 23, Indels: 16
0.94 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 382 0.67
49 184 0.32
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:24382342 original size:96 final size:94
Alignment explanation
Indices: 24381935--24382580 Score: 942
Period size: 96 Copynumber: 6.8 Consensus size: 94
24381925 CCCTTCGGGA
* * *
24381935 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
24382000 TTTCACATTCATCACATTGGCCATTCGGC
66 TTTCACATTCATCACATTGGCCATTCGGC
* * * *
24382029 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
24382093 -TGTTCACATTCATCACATTGGCCATTCGGC
65 CT-TTCACATTCATCACATTGGCCATTCGGC
* * * *
24382123 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
24382187 -TGTTCACATTCATCACATTGGCCATTCGGC
65 CT-TTCACATTCATCACATTGGCCATTCGGC
* *
24382217 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATA
24382281 CACTTTCACATTCATCACATTGGCCATTCGGC
63 CACTTTCACATTCATCACATTGGCCATTCGGC
* *
24382313 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
* *
24382378 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATTGGCCATTCGGC
* *
24382409 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
*
24382474 ACTTTCACATTCATCACATTGGCCATTAGGC
64 ACTTTCACATTCATCACATTGGCCATTCGGC
* *
24382505 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCCTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
24382570 ACTTTCACATT
64 ACTTTCACATT
24382581 TATTCAAATA
Statistics
Matches: 518, Mismatches: 26, Indels: 14
0.93 0.05 0.03
Matches are distributed among these distances:
93 2 0.00
94 223 0.43
96 246 0.47
97 2 0.00
98 45 0.09
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGC
Found at i:24384105 original size:56 final size:56
Alignment explanation
Indices: 24384038--24384157 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
24384028 TATTAGTTTA
24384038 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
* *
24384094 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAATATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
24384150 TTGCCCAT
1 TTGCCCAT
24384158 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:24395791 original size:24 final size:24
Alignment explanation
Indices: 24395760--24395923 Score: 109
Period size: 24 Copynumber: 6.8 Consensus size: 24
24395750 CTCAACCGAT
24395760 TTCGCACACATAGTGCCAATCAAA
1 TTCGCACACATAGTGCCAATCAAA
24395784 TTCGCACACATAGTGCC-ATGCTAAA
1 TTCGCACACATAGTGCCAAT-C-AAA
* ** *
24395809 -CCGCACACATAGTG-CTTTGGAAA
1 TTCGCACACATAGTGCCAAT-CAAA
* * ** * * *
24395832 TTCACTCATTTATTGACATTCAAA
1 TTCGCACACATAGTGCCAATCAAA
* * * * *
24395856 CTAGCATACATAGTGCCAATCGAT
1 TTCGCACACATAGTGCCAATCAAA
*
24395880 TTCGCACACATAGTGCCATTCAAA
1 TTCGCACACATAGTGCCAATCAAA
* *
24395904 TCCGCACACTTAGTGCCAAT
1 TTCGCACACATAGTGCCAAT
24395924 GTTGGCTCAT
Statistics
Matches: 103, Mismatches: 32, Indels: 10
0.71 0.22 0.07
Matches are distributed among these distances:
23 6 0.06
24 91 0.88
25 6 0.06
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.26
Consensus pattern (24 bp):
TTCGCACACATAGTGCCAATCAAA
Found at i:24395817 original size:48 final size:47
Alignment explanation
Indices: 24395762--24395923 Score: 146
Period size: 48 Copynumber: 3.4 Consensus size: 47
24395752 CAACCGATTT
*
24395762 CGCACACATAGTGCCAATCAAATTCGCACACATAGTGCCATGCTAAAC
1 CGCACACATAGTGCCAATCAAATTCGCACACATAGTGCCATTC-AAAC
** * * * ** * *
24395810 CGCACACATAGTG-CTTTGGAAATTCACTCATTTATTGACATTCAAAC
1 CGCACACATAGTGCCAAT-CAAATTCGCACACATAGTGCCATTCAAAC
* * * *
24395857 TAGCATACATAGTGCCAATCGATTTCGCACACATAGTGCCATTCAAATC
1 -CGCACACATAGTGCCAATCAAATTCGCACACATAGTGCCATTCAAA-C
*
24395906 CGCACACTTAGTGCCAAT
1 CGCACACATAGTGCCAAT
24395924 GTTGGCTCAT
Statistics
Matches: 84, Mismatches: 26, Indels: 8
0.71 0.22 0.07
Matches are distributed among these distances:
47 6 0.07
48 75 0.89
49 3 0.04
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (47 bp):
CGCACACATAGTGCCAATCAAATTCGCACACATAGTGCCATTCAAAC
Found at i:24399109 original size:19 final size:20
Alignment explanation
Indices: 24399081--24399119 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
24399071 TATTAGTGAT
*
24399081 TACATCTGTAAAT-TTAATA
1 TACATATGTAAATATTAATA
*
24399100 TACATATGTATATATTAATA
1 TACATATGTAAATATTAATA
24399120 AAATATGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.44
Consensus pattern (20 bp):
TACATATGTAAATATTAATA
Done.