Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 81 of 325
Found at i:25701515 original size:45 final size:48
Alignment explanation
Indices: 25701451--25701569 Score: 147
Period size: 48 Copynumber: 2.5 Consensus size: 48
25701441 GACAGGACAG
*
25701451 GACAGAAATGAGCCATGTAAGTCCATA-T-CAT-TATATGG-ATTTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATTACATATATATGGCA-TTGGA
* *
25701496 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATTACATATATATGGCATTGGA
* **
25701544 GACAGGAATAATTCATGTAAGTCCAT
1 GACAGGAATGAGCCATGTAAGTCCAT
25701570 GTCGAAGACA
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
45 25 0.40
46 1 0.02
47 2 0.03
48 34 0.54
49 1 0.02
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGTCCATATTACATATATATGGCATTGGA
Found at i:25701552 original size:48 final size:45
Alignment explanation
Indices: 25701451--25701552 Score: 134
Period size: 45 Copynumber: 2.2 Consensus size: 45
25701441 GACAGGACAG
* *
25701451 GACAGAAATGAGCCATGTAAGTCCATATCATTATATGGATTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATTATATGGATTTGGA
*
25701496 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCA-TTGGA
1 GACAGGAATGAGCCATGTAAGCCCATA-T-CAT-TATATGG-ATTTGGA
25701544 GACAGGAAT
1 GACAGGAAT
25701553 AATTCATGTA
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
45 25 0.50
46 1 0.02
47 2 0.04
48 21 0.42
49 1 0.02
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (45 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATTATATGGATTTGGA
Found at i:25705804 original size:45 final size:48
Alignment explanation
Indices: 25705740--25705858 Score: 145
Period size: 48 Copynumber: 2.5 Consensus size: 48
25705730 GACAGGACAG
* * *
25705740 GACAGAAATGAGCCATGTAAGTCCATA-T-CA-GTATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATTACATATATATGGCATTGGA
* *
25705785 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATTACATATATATGGCATTGGA
* **
25705833 GACAGGAATAATTCATGTAAGTCCAT
1 GACAGGAATGAGCCATGTAAGTCCAT
25705859 GTCGAAGACA
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
45 25 0.40
46 1 0.02
47 1 0.02
48 35 0.56
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGTCCATATTACATATATATGGCATTGGA
Found at i:25705840 original size:48 final size:45
Alignment explanation
Indices: 25705740--25705877 Score: 132
Period size: 48 Copynumber: 3.0 Consensus size: 45
25705730 GACAGGACAG
* * * *
25705740 GACAGAAATGAGCCATGTAAGTCCATATCAGTATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAATATATGGCATTGGA
*
25705785 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATA-T-CA-ATATATGGCATTGGA
* ** * * * *
25705833 GACAGGAATAATTCATGTAAGTCCATGTCGAAGACATGGCATTGG
1 GACAGGAATGAGCCATGTAAGCCCATATC-AATATATGGCATTGG
25705878 CAGGATATTG
Statistics
Matches: 76, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
45 25 0.33
46 13 0.17
47 3 0.04
48 35 0.46
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (45 bp):
GACAGGAATGAGCCATGTAAGCCCATATCAATATATGGCATTGGA
Found at i:25706724 original size:43 final size:45
Alignment explanation
Indices: 25706662--25706755 Score: 158
Period size: 44 Copynumber: 2.1 Consensus size: 45
25706652 TCCATTTCCA
25706662 ACTTTAGAAATTCACCATAAATTTTAAAAAAATAA-T-GGTGGTGT
1 ACTTTAGAAATTCACCATAAATTTT-AAAAAATAATTAGGTGGTGT
25706706 ACTTTA-AAATTCACCATAAATTTTAAAAAATAATTAGGTGGTGT
1 ACTTTAGAAATTCACCATAAATTTTAAAAAATAATTAGGTGGTGT
25706750 ACTTTA
1 ACTTTA
25706756 TATGGTTAGA
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
42 9 0.19
43 19 0.40
44 20 0.42
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.36
Consensus pattern (45 bp):
ACTTTAGAAATTCACCATAAATTTTAAAAAATAATTAGGTGGTGT
Found at i:25708787 original size:40 final size:41
Alignment explanation
Indices: 25708695--25708840 Score: 208
Period size: 41 Copynumber: 3.6 Consensus size: 41
25708685 ACCGGCTCTT
* *
25708695 AGCCTGCTAGACTTATAGTCCGGAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
*
25708736 AGCCTGCTAGACTTATAGTCTGAAATGTGTCA-CGGTATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
25708776 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* *
25708817 AGCCTGCTAGACGTAAAGTCTGAA
1 AGCCTGCTAGACTTATAGTCTGAA
25708841 TTATTCACTA
Statistics
Matches: 96, Mismatches: 6, Indels: 8
0.87 0.05 0.07
Matches are distributed among these distances:
39 1 0.01
40 33 0.34
41 59 0.61
42 3 0.03
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:25716075 original size:33 final size:33
Alignment explanation
Indices: 25716006--25716103 Score: 108
Period size: 33 Copynumber: 2.9 Consensus size: 33
25715996 CTATACCCAT
* * *
25716006 CTATGCCGAATGCATAGATACATACACTTATTTTCAC
1 CTATGCCGAATGCAT--ACACATA-A-ATATATTCAC
25716043 CTATGCCGAATGCATACACATAAATATATTCAC
1 CTATGCCGAATGCATACACATAAATATATTCAC
* *
25716076 CTATGCCGAATGCA-ACATATATATATAT
1 CTATGCCGAATGCATACACATAAATATAT
25716104 ACATATCTAT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 12 0.21
33 22 0.39
34 1 0.02
35 6 0.11
37 15 0.27
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (33 bp):
CTATGCCGAATGCATACACATAAATATATTCAC
Found at i:25716363 original size:41 final size:41
Alignment explanation
Indices: 25716318--25716473 Score: 235
Period size: 41 Copynumber: 3.8 Consensus size: 41
25716308 ACCGGCTCTT
*
25716318 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
25716359 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
25716400 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
25716441 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
25716474 TAACGATAAA
Statistics
Matches: 107, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 98 0.92
42 2 0.02
43 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:25716980 original size:21 final size:22
Alignment explanation
Indices: 25716956--25717008 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 22
25716946 ATAATATATA
25716956 TATTTCAC-TCATACTTTTAAT
1 TATTTCACATCATACTTTTAAT
*
25716977 TATTTCAACTATCATATTTTTAAT
1 TATTTC-AC-ATCATACTTTTAAT
25717001 TATATTCA
1 TAT-TTCA
25717009 TCCAAAACAG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 6 0.22
22 2 0.07
24 16 0.59
25 3 0.11
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.53
Consensus pattern (22 bp):
TATTTCACATCATACTTTTAAT
Found at i:25721775 original size:16 final size:16
Alignment explanation
Indices: 25721756--25721786 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25721746 CCAATTTGTG
*
25721756 AAAATAAAATTAAATA
1 AAAATAAAATAAAATA
25721772 AAAATAAAATAAAAT
1 AAAATAAAATAAAAT
25721787 CAAGAATACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAATAAAATAAAATA
Found at i:25722418 original size:25 final size:23
Alignment explanation
Indices: 25722390--25722446 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 23
25722380 ATAAAAAATA
*
25722390 CAAAAAATATCAAAATAAATATTT
1 CAAAAAATATAAAAATAAAT-TTT
25722414 CCAAACAAAT-TAAAAATAAATTTT
1 -CAAA-AAATATAAAAATAAATTTT
25722438 -AAAAAATAT
1 CAAAAAATAT
25722447 GTAGACTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
21 4 0.14
22 4 0.14
24 3 0.10
25 14 0.48
26 4 0.14
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.28
Consensus pattern (23 bp):
CAAAAAATATAAAAATAAATTTT
Found at i:25722668 original size:32 final size:32
Alignment explanation
Indices: 25722631--25722698 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
25722621 AAATAAGGAG
*
25722631 AAAACAACAAGAAAATAACATTCAAAAATAGA
1 AAAACAACAAGAAAATAACATTCAAAAATAAA
25722663 AAAACAACAAGAAAATAACATTCAAAAATAAA
1 AAAACAACAAGAAAATAACATTCAAAAATAAA
25722695 AAAA
1 AAAA
25722699 ATATGCAGAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.72, C:0.12, G:0.04, T:0.12
Consensus pattern (32 bp):
AAAACAACAAGAAAATAACATTCAAAAATAAA
Found at i:25723568 original size:31 final size:32
Alignment explanation
Indices: 25723493--25723568 Score: 82
Period size: 32 Copynumber: 2.4 Consensus size: 32
25723483 GAAAAAACTT
* * *
25723493 AATAGCCCAATGACTTAAATAAAAATGTTTCA
1 AATAGTCCAATAACTTAAATAAAAATCTTTCA
** * *
25723525 AATAGTTTAATAACTTAAATCAAAA-CTTTCG
1 AATAGTCCAATAACTTAAATAAAAATCTTTCA
25723556 AATAGTCCAATAA
1 AATAGTCCAATAA
25723569 TAAATTTATA
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
31 15 0.43
32 20 0.57
ACGTcount: A:0.47, C:0.14, G:0.08, T:0.30
Consensus pattern (32 bp):
AATAGTCCAATAACTTAAATAAAAATCTTTCA
Found at i:25732325 original size:30 final size:30
Alignment explanation
Indices: 25732258--25732326 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
25732248 TGTCACCAGC
* *
25732258 CCGTGTCCCTCACACGGATGAGACACACGG
1 CCGTGTCTCTCACACGGATGAGACACACGA
*
25732288 CCGTGTCTCTCACACGGTTGAGACACACGA
1 CCGTGTCTCTCACACGGATGAGACACACGA
25732318 CCGTGTCTC
1 CCGTGTCTC
25732327 ATCCCATGTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.20, C:0.36, G:0.25, T:0.19
Consensus pattern (30 bp):
CCGTGTCTCTCACACGGATGAGACACACGA
Found at i:25733893 original size:51 final size:51
Alignment explanation
Indices: 25733810--25733931 Score: 133
Period size: 51 Copynumber: 2.4 Consensus size: 51
25733800 ACGGATGCCC
* * *
25733810 GGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACA-A-AGT
1 GGCCTACACATAGTACCACACTTGTAGCCAAAGCTACCTT-TT-ACATATAGT
* * *
25733861 GGCCTTCACATAGTACCAGACTTGT-GACCAAAGCTATCTTTTACATATAGT
1 GGCCTACACATAGTACCACACTTGTAG-CCAAAGCTACCTTTTACATATAGT
*
25733912 GGCCTACACTTAGTACCACA
1 GGCCTACACATAGTACCACA
25733932 TATGTGATAG
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
49 3 0.05
50 4 0.07
51 53 0.88
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (51 bp):
GGCCTACACATAGTACCACACTTGTAGCCAAAGCTACCTTTTACATATAGT
Found at i:25734892 original size:9 final size:9
Alignment explanation
Indices: 25734878--25734905 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
25734868 CTTTTATACC
25734878 ACTTTTACA
1 ACTTTTACA
25734887 ACTTTTACA
1 ACTTTTACA
25734896 ACTTTTACA
1 ACTTTTACA
25734905 A
1 A
25734906 AATGGTCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43
Consensus pattern (9 bp):
ACTTTTACA
Found at i:25741090 original size:30 final size:30
Alignment explanation
Indices: 25741056--25741113 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
25741046 TTTTCGAGCA
*
25741056 TAGGGGCAAAATGGTTATTTTGTCAAAGTC
1 TAGGGGCAAAATGGTTATTTTATCAAAGTC
25741086 TAGGGGCAAAATGGTTATTTTATCAAAG
1 TAGGGGCAAAATGGTTATTTTATCAAAG
25741114 ATGTGAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAATGGTTATTTTATCAAAGTC
Found at i:25741611 original size:94 final size:94
Alignment explanation
Indices: 25741448--25741808 Score: 343
Period size: 94 Copynumber: 3.9 Consensus size: 94
25741438 TGATTTGTGC
* * *
25741448 GCTAGTGTAAGACATGTCTGAGACATGCTTC-GACCACATTATGAGAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGAGACATGCATCAGACCATACTATGAGAGCCAGTGTAAGACCATGT
* * * *
25741512 TTGGGACATGGCATCAGCATCCAGACGAGG
66 CTGGGACATGGCATCGGCATCAAGA-GAGT
*
25741542 GCTAGTGTAAGACATGTCTGAGACATGCATCAG-CCATACTATGATAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGAGACATGCATCAGACCATACTATGAGAGCCAGTGTAAGACCATGT
*
25741606 CTGGGACATGGCAACGGCA-CAGAGATGAGT
66 CTGGGACATGGCATCGGCATCA-AGA-GAGT
* * * * *
25741636 GCCAGTGTAAGACATGTCTGGGACATGCATC-GGCC-TCGAC-A-GAGATAGTCAGTATAAGA-C
1 GCTAGTGTAAGACATGTCTGAGACATGCATCAGACCAT--ACTATGAG--AGCCAGTGTAAGACC
* * * *
25741696 ATGTTTGGGACA-CGCTTCGGC-T-AAGAGTTGT
62 ATGTCTGGGACATGGCATCGGCATCAAGAG-AGT
*
25741727 GCTAGTGTAAGACATGTCT-AGGACATGCATCAGCACGCGTA-TATGAGAGCCAGTGTAAGACCA
1 GCTAGTGTAAGACATGTCTGA-GACATGCATCAG-AC-CATACTATGAGAGCCAGTGTAAGACCA
* *
25741790 TGTCTAGGACTTGGCATCG
63 TGTCTGGGACATGGCATCG
25741809 ACACTATATC
Statistics
Matches: 219, Mismatches: 30, Indels: 36
0.77 0.11 0.13
Matches are distributed among these distances:
90 1 0.00
91 33 0.15
92 13 0.06
93 24 0.11
94 133 0.61
95 15 0.07
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGAGACATGCATCAGACCATACTATGAGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGGCATCAAGAGAGT
Found at i:25741787 original size:48 final size:46
Alignment explanation
Indices: 25741451--25741799 Score: 214
Period size: 47 Copynumber: 7.5 Consensus size: 46
25741441 TTTGTGCGCT
* * *
25741451 AGTGTAAGACATGTCTGAGACATGCTTC-G-ACCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCACC-GA-TATGAGAGCC
* * * * *
25741497 AGTGTAAGACCATGTTTGGGACATGGCATCAGCATCC-AGACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCA-CCGATATGAGAGCC
* ** *
25741545 AGTGTAAGACATGTCTGAGACATGCATCAGC-CATACTATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCACCGA-TATGAGAGCC
* * * * *
25741591 AGTGTAAGACCATGTCTGGGACATGGCAACGGCACAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCACCGATATGAGAGCC
* * *
25741639 AGTGTAAGACATGTCTGGGACATGCATCGGC-CTCGACA-GAGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCAC-CGATATGAG--AGCC
* * * * * * * *
25741686 AGTATAAGACATGTTTGGGACACGCTTCGGCTA-AGAGT-T--GTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGC-ACCGA-TATGAGAGCC
*
25741730 AGTGTAAGACATGTCTAGGACATGCATCAGCACGCGTATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCAC-CG-ATATGAGAGCC
*
25741778 AGTGTAAGACCATGTCTAGGAC
1 AGTGTAAGA-CATGTCTGGGAC
25741800 TTGGCATCGA
Statistics
Matches: 234, Mismatches: 45, Indels: 45
0.72 0.14 0.14
Matches are distributed among these distances:
43 1 0.00
44 27 0.12
45 7 0.03
46 44 0.19
47 82 0.35
48 53 0.23
49 17 0.07
50 1 0.00
51 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCACCGATATGAGAGCC
Found at i:25743384 original size:21 final size:20
Alignment explanation
Indices: 25743339--25743385 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
25743329 AACCGTATGC
25743339 TTGTGAAAAGTGTTTTATCA
1 TTGTGAAAAGTGTTTTATCA
*
25743359 -AGTGAGATAAGTGTTTTAT-A
1 TTGTGA-A-AAGTGTTTTATCA
25743379 TTGTGAA
1 TTGTGAA
25743386 TGAGTTTGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 6
0.73 0.07 0.20
Matches are distributed among these distances:
19 4 0.18
20 3 0.14
21 15 0.68
ACGTcount: A:0.32, C:0.02, G:0.23, T:0.43
Consensus pattern (20 bp):
TTGTGAAAAGTGTTTTATCA
Found at i:25746041 original size:40 final size:40
Alignment explanation
Indices: 25745939--25746089 Score: 196
Period size: 40 Copynumber: 3.7 Consensus size: 40
25745929 ACTCAAATTC
* * *
25745939 TCGCACATTAAGTTCCAATACATAGCCGAAGCTATTTC-AA
1 TCGCACACTAAGTGCC-ATACATAGCCGAAGCTATCTCGAA
*
25745979 TCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAG
1 --TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
* *
25746021 TCGCACACTAAGTGCTATACATAGCCGAAGCTATCTTGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
* *
25746061 TCGCACACTAAGTGCCGTACATAACCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAA
25746090 TTGTCGTCAA
Statistics
Matches: 98, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
40 63 0.64
41 20 0.20
42 15 0.15
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
Found at i:25755898 original size:42 final size:42
Alignment explanation
Indices: 25755839--25755964 Score: 177
Period size: 40 Copynumber: 3.0 Consensus size: 42
25755829 ATACTTGAAT
*
25755839 TCTCGCACACTAAGTGCCAATACATAGCTGAAGCTATTTC-AA
1 TCTCGCACACTAAGTGCC-ATACATAGCTGAAGCTATCTCGAA
*
25755881 TCTCGCACACTAAGTGCCATACATAGCTGAAGTTATCTCGAA
1 TCTCGCACACTAAGTGCCATACATAGCTGAAGCTATCTCGAA
* * *
25755923 --TCGCACACTAAGTGCTATACATAGTTGAAGCTATCTTGAA
1 TCTCGCACACTAAGTGCCATACATAGCTGAAGCTATCTCGAA
25755963 TC
1 TC
25755965 ACACACTGAG
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
40 36 0.48
41 19 0.25
42 20 0.27
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (42 bp):
TCTCGCACACTAAGTGCCATACATAGCTGAAGCTATCTCGAA
Found at i:25755943 original size:40 final size:40
Alignment explanation
Indices: 25755841--25755985 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
25755831 ACTTGAATTC
* *
25755841 TCGCACACTAAGTGCCAATACATAGCTGAAGCTATTTC-AA
1 TCGCACACTAAGTG-CTATACATAGCTGAAGCTATCTCGAA
* *
25755881 TCTCGCACACTAAGTGCCATACATAGCTGAAGTTATCTCGAA
1 --TCGCACACTAAGTGCTATACATAGCTGAAGCTATCTCGAA
* *
25755923 TCGCACACTAAGTGCTATACATAGTTGAAGCTATCTTGAA
1 TCGCACACTAAGTGCTATACATAGCTGAAGCTATCTCGAA
* * *
25755963 TCACACACTGAGTGCTGTACATA
1 TCGCACACTAAGTGCTATACATA
25755986 ACCGAATTAT
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
40 56 0.61
41 20 0.22
42 16 0.17
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (40 bp):
TCGCACACTAAGTGCTATACATAGCTGAAGCTATCTCGAA
Found at i:25763031 original size:12 final size:12
Alignment explanation
Indices: 25763016--25763040 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25763006 CCGTGTCCCA
25763016 GCCCGTGTTCGT
1 GCCCGTGTTCGT
25763028 GCCCGTGTTCGT
1 GCCCGTGTTCGT
25763040 G
1 G
25763041 TAACTCAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.32, G:0.36, T:0.32
Consensus pattern (12 bp):
GCCCGTGTTCGT
Found at i:25764445 original size:25 final size:25
Alignment explanation
Indices: 25764333--25764449 Score: 137
Period size: 25 Copynumber: 4.7 Consensus size: 25
25764323 TCCTATACAT
* * *
25764333 GTATGCTCATACGAGCTATGAATCG
1 GTATGCTCACATGAGCTATAAATCG
* *
25764358 GTATGCTCAC-TCGAGCTGTAGATCG
1 GTATGCTCACAT-GAGCTATAAATCG
**
25764383 GTATGCTTTCATGAGCTATAAATCG
1 GTATGCTCACATGAGCTATAAATCG
* *
25764408 ATATGCTCTCATGAGCTATAAATCG
1 GTATGCTCACATGAGCTATAAATCG
25764433 GTATGCTCACATGAGCT
1 GTATGCTCACATGAGCT
25764450 GTGGATCTAA
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
25 76 0.99
26 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (25 bp):
GTATGCTCACATGAGCTATAAATCG
Found at i:25768239 original size:11 final size:11
Alignment explanation
Indices: 25768223--25768247 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
25768213 ACCTAAACTA
25768223 AAAAAGAAAAG
1 AAAAAGAAAAG
25768234 AAAAAGAAAAG
1 AAAAAGAAAAG
25768245 AAA
1 AAA
25768248 CCCTAACGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:25775778 original size:33 final size:33
Alignment explanation
Indices: 25775714--25775800 Score: 113
Period size: 33 Copynumber: 2.6 Consensus size: 33
25775704 ATGTAGTAAT
* * * *
25775714 AGTCTGGG-CTTGAGCCTTATTCAGTATCAGTAC
1 AGTCTGGGCCTT-AGCCCTATACAATAACAGTAC
25775747 AGTCTGGGCCTTAGCCCTATACAATAACAGTAC
1 AGTCTGGGCCTTAGCCCTATACAATAACAGTAC
*
25775780 AGTTTGGGCCTTAGCCCTATA
1 AGTCTGGGCCTTAGCCCTATA
25775801 TAGTATCAGA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
33 45 0.94
34 3 0.06
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (33 bp):
AGTCTGGGCCTTAGCCCTATACAATAACAGTAC
Found at i:25775991 original size:27 final size:26
Alignment explanation
Indices: 25775952--25776051 Score: 94
Period size: 27 Copynumber: 3.7 Consensus size: 26
25775942 TAATAATGCA
**
25775952 GCATAGCTGCCAGAACCAGTGAATGTG
1 GCATAGCCACCAGAA-CAGTGAATGTG
* *
25775979 GCAAAGCCACCAGTATCAGT-AATTGTG
1 GCATAGCCACCAG-AACAGTGAA-TGTG
*
25776006 GCGTAGCCACCAGTAACAGTGAATGTG
1 GCATAGCCACCAG-AACAGTGAATGTG
* *
25776033 ACATAGCCACCAGTACAGT
1 GCATAGCCACCAGAACAGT
25776052 ACTTCCTCCA
Statistics
Matches: 60, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
26 7 0.12
27 50 0.83
28 3 0.05
ACGTcount: A:0.32, C:0.24, G:0.25, T:0.19
Consensus pattern (26 bp):
GCATAGCCACCAGAACAGTGAATGTG
Found at i:25776270 original size:27 final size:27
Alignment explanation
Indices: 25776188--25776278 Score: 85
Period size: 27 Copynumber: 3.4 Consensus size: 27
25776178 GGGCATAATT
*
25776188 GTCATTTTACCATACAAGGCTATTACA
1 GTCATTTTACCATACAAGGGTATTACA
* * ** **
25776215 ATCATTTTACCTTACTGGGGTACAACA
1 GTCATTTTACCATACAAGGGTATTACA
*
25776242 GTCATTTTACGC-TACAAGGGTATTTCA
1 GTCATTTTAC-CATACAAGGGTATTACA
*
25776269 GTAATTTTAC
1 GTCATTTTAC
25776279 AAATTGAGGG
Statistics
Matches: 49, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGTATTACA
Found at i:25776288 original size:27 final size:27
Alignment explanation
Indices: 25776258--25776370 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 27
25776248 TTACGCTACA
25776258 AGGGTATTTCAGTAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATTG
* * *
25776285 AGGGTATTTTAGTAATTTCACAAATTA
1 AGGGTATTTCAGTAATTTTACAAATTG
***
25776312 AGGGTATTTC-GATAATTTTACAACCCG
1 AGGGTATTTCAG-TAATTTTACAAATTG
* *
25776339 AGGGTATTTTAGTAATTTTACAAATAG
1 AGGGTATTTCAGTAATTTTACAAATTG
25776366 AGGGT
1 AGGGT
25776371 CTTAATGACC
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 69 0.97
28 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATTG
Found at i:25776370 original size:54 final size:54
Alignment explanation
Indices: 25776257--25776363 Score: 162
Period size: 54 Copynumber: 2.0 Consensus size: 54
25776247 TTTACGCTAC
**
25776257 AAGGGTATTTCAGTAATTTTACAAATTGAGGGTATTTTAGTAATTTCACAAATT
1 AAGGGTATTTCAGTAATTTTACAAACCGAGGGTATTTTAGTAATTTCACAAATT
* *
25776311 AAGGGTATTTC-GATAATTTTACAACCCGAGGGTATTTTAGTAATTTTACAAAT
1 AAGGGTATTTCAG-TAATTTTACAAACCGAGGGTATTTTAGTAATTTCACAAAT
25776364 AGAGGGTCTT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
53 1 0.02
54 47 0.98
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (54 bp):
AAGGGTATTTCAGTAATTTTACAAACCGAGGGTATTTTAGTAATTTCACAAATT
Found at i:25776858 original size:19 final size:17
Alignment explanation
Indices: 25776819--25776858 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 17
25776809 TATCCGTGTA
*
25776819 GGCCCACAAGCCCATCG
1 GGCCCACAAGCCCATCC
25776836 GGCCCACACAGCCCAATCC
1 GGCCCACA-AGCCC-ATCC
25776855 GGCC
1 GGCC
25776859 TGACGTGGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 5 0.25
19 7 0.35
ACGTcount: A:0.23, C:0.50, G:0.23, T:0.05
Consensus pattern (17 bp):
GGCCCACAAGCCCATCC
Found at i:25781757 original size:19 final size:20
Alignment explanation
Indices: 25781720--25781757 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
25781710 CCAATGTGAT
*
25781720 GGTCGATGCTCTTAGTTGAA
1 GGTCGATGCTCTGAGTTGAA
25781740 GGTCGATGCTC-GAGTTGA
1 GGTCGATGCTCTGAGTTGA
25781758 GGGTGATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.32
Consensus pattern (20 bp):
GGTCGATGCTCTGAGTTGAA
Found at i:25795662 original size:42 final size:42
Alignment explanation
Indices: 25795602--25795687 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
25795592 AATAACGAGA
25795602 CTAGTTTAGTTACAGTTATATGAACTTACTAAGCATGTAATG
1 CTAGTTTAGTTACAGTTATATGAACTTACTAAGCATGTAATG
*
25795644 CTAGTTTAGTTACCGTTATATGAACTTACTAAGCATGTAATG
1 CTAGTTTAGTTACAGTTATATGAACTTACTAAGCATGTAATG
25795686 CT
1 CT
25795688 TACTCCGTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.38
Consensus pattern (42 bp):
CTAGTTTAGTTACAGTTATATGAACTTACTAAGCATGTAATG
Found at i:25797534 original size:43 final size:42
Alignment explanation
Indices: 25797377--25797535 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 42
25797367 TATGTGTTGT
**
25797377 CGTGTAAGACCACATCTGGGATGTTGGCATCGATTTGTGATTTA
1 CGTGTAAGACCACATCTGGGACATTGGCATCGATTT-TGA-TTA
** * * * *
25797421 CGTGTAAGACCATGTTTGGGACATTGGAATCG-TATATGATTT
1 CGTGTAAGACCACATCTGGGACATTGGCATCGAT-TTTGATTA
* * * *
25797463 TGTGTAAGACC-CTGTCTGAGACAGTGGCATCGATGTTTGATTA
1 CGTGTAAGACCAC-ATCTGGGACATTGGCATCGAT-TTTGATTA
*
25797506 CATGTAAGACCACATCTGGGACATTGGCAT
1 CGTGTAAGACCACATCTGGGACATTGGCAT
25797536 TGTATGAGCT
Statistics
Matches: 89, Mismatches: 22, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
42 27 0.30
43 34 0.38
44 28 0.31
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (42 bp):
CGTGTAAGACCACATCTGGGACATTGGCATCGATTTTGATTA
Found at i:25798657 original size:28 final size:28
Alignment explanation
Indices: 25798626--25798689 Score: 119
Period size: 28 Copynumber: 2.3 Consensus size: 28
25798616 ATTCATGGTA
25798626 TAACACATTTGGCATTCAAAAGAAACAT
1 TAACACATTTGGCATTCAAAAGAAACAT
25798654 TAACACATTTGGCATTCAAAAGAAACAT
1 TAACACATTTGGCATTCAAAAGAAACAT
*
25798682 TCACACAT
1 TAACACAT
25798690 AACCATGCAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.45, C:0.20, G:0.09, T:0.25
Consensus pattern (28 bp):
TAACACATTTGGCATTCAAAAGAAACAT
Found at i:25802307 original size:18 final size:17
Alignment explanation
Indices: 25802248--25802307 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 17
25802238 AAAGAGTGAG
25802248 AAGTAAAAGTTTAGGGGA
1 AAGTAAAAGTTTA-GGGA
* *
25802266 AAATAAAAAGTTT-TGGA
1 AAGT-AAAAGTTTAGGGA
*
25802283 GAGTAAAAGTTTGAGGGA
1 AAGTAAAAGTTT-AGGGA
25802301 AAGTAAA
1 AAGTAAA
25802308 TAGGGGCAGT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
16 8 0.24
17 5 0.15
18 12 0.36
19 8 0.24
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.23
Consensus pattern (17 bp):
AAGTAAAAGTTTAGGGA
Found at i:25808316 original size:34 final size:34
Alignment explanation
Indices: 25808267--25808336 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 34
25808257 GCATTTCTGT
*
25808267 TATTGTTACTATAATGGGCTTAGGCCCACACTGA
1 TATTGTTACTATAATGGGCTAAGGCCCACACTGA
* * *
25808301 TATTGTTATTGTAATGGGCTAAGGCCCATACTGA
1 TATTGTTACTATAATGGGCTAAGGCCCACACTGA
25808335 TA
1 TA
25808337 CTGGACTGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.34
Consensus pattern (34 bp):
TATTGTTACTATAATGGGCTAAGGCCCACACTGA
Found at i:25815614 original size:20 final size:19
Alignment explanation
Indices: 25815584--25815642 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 19
25815574 AACATTAAAT
25815584 TAAATTTAATATTAAGATAA
1 TAAA-TTAATATTAAGATAA
* *
25815604 TCAATTCAATATTAAAATAA
1 TAAATT-AATATTAAGATAA
* *
25815624 TAAAATACTATTAAGATAA
1 TAAATTAATATTAAGATAA
25815643 GTATTAAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
19 13 0.41
20 19 0.59
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (19 bp):
TAAATTAATATTAAGATAA
Found at i:25822207 original size:9 final size:10
Alignment explanation
Indices: 25822192--25822229 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
25822182 TGTTTAGTGA
25822192 AAAGTTTTCT
1 AAAGTTTTCT
*
25822202 -AAGTTTTGT
1 AAAGTTTTCT
*
25822211 AAAATTTTCT
1 AAAGTTTTCT
25822221 AAAGTTTTC
1 AAAGTTTTC
25822230 AATTTAGTCC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.50
Consensus pattern (10 bp):
AAAGTTTTCT
Found at i:25822225 original size:20 final size:20
Alignment explanation
Indices: 25822191--25822228 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
25822181 CTGTTTAGTG
25822191 AAAAGTTTTCTAAGTTTTGT
1 AAAAGTTTTCTAAGTTTTGT
25822211 AAAA-TTTTCTAAAGTTTT
1 AAAAGTTTTCT-AAGTTTT
25822229 CAATTTAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.50
Consensus pattern (20 bp):
AAAAGTTTTCTAAGTTTTGT
Found at i:25826056 original size:59 final size:57
Alignment explanation
Indices: 25825914--25826065 Score: 161
Period size: 59 Copynumber: 2.7 Consensus size: 57
25825904 TTCAACTATA
* * * *
25825914 ATTAAACTTAA-TTAAT-TT-AA-TATTAAATTAATATAATATTTATCAATATAAAT
1 ATTAAATTTAATTTAATATTAAACTATTAAAATAATATAATATTTATCAAGATAAAC
* * *
25825967 ATTAGATTAAATTTAATATTAAATCTTATTAAAATAAT-TGAATGTTTATCACAAGATAAAC
1 ATTAAATTTAATTTAATATTAAA-C-TATTAAAATAATAT-AATATTTAT--CAAGATAAAC
25826028 ATTAAATTTAATTTAATATTAAACTATTAAAATAATAT
1 ATTAAATTTAATTTAATATTAAACTATTAAAATAATAT
25826066 TATTTTTGAA
Statistics
Matches: 80, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
53 8 0.10
54 5 0.06
55 2 0.03
56 2 0.03
58 1 0.01
59 31 0.39
60 2 0.03
61 29 0.36
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.43
Consensus pattern (57 bp):
ATTAAATTTAATTTAATATTAAACTATTAAAATAATATAATATTTATCAAGATAAAC
Found at i:25839972 original size:43 final size:43
Alignment explanation
Indices: 25839891--25839972 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
25839881 TCGAATGCCT
* * * * *
25839891 CATATATCGCGAACTTGTACCACTCAACAAGTTTGGATTCTCA
1 CATATATCACGAACTCGGACCACTCAACAAGCTCGGATTCTCA
*
25839934 CATATATCACGAACTCGGACCGCTCAACAAGCTCGGATT
1 CATATATCACGAACTCGGACCACTCAACAAGCTCGGATT
25839973 TCTTAATTCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (43 bp):
CATATATCACGAACTCGGACCACTCAACAAGCTCGGATTCTCA
Found at i:25842289 original size:30 final size:30
Alignment explanation
Indices: 25842251--25842307 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
25842241 CAACCAAGAC
*
25842251 ATCAACAC-ATCATTCACATGCT-ATCATCT
1 ATCAACACAAACA-TCACATGCTCATCATCT
25842280 ATCATACACAAACATCACATGCTCATCA
1 ATCA-ACACAAACATCACATGCTCATCA
25842308 ACTCAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 4 0.17
30 13 0.54
31 7 0.29
ACGTcount: A:0.39, C:0.32, G:0.04, T:0.26
Consensus pattern (30 bp):
ATCAACACAAACATCACATGCTCATCATCT
Found at i:25844611 original size:20 final size:20
Alignment explanation
Indices: 25844574--25844618 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
25844564 ATGGACTAAA
* * *
25844574 ATGAAAAGTTGTACAATTTG
1 ATGAAAAATTCTAAAATTTG
*
25844594 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
25844614 ATGAA
1 ATGAA
25844619 TACATGTGCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.47, C:0.04, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:25851690 original size:28 final size:27
Alignment explanation
Indices: 25851623--25851692 Score: 86
Period size: 28 Copynumber: 2.6 Consensus size: 27
25851613 GGAATATGAT
* *
25851623 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTAACCATGCA
* *
25851650 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TAACCATGCA
*
25851678 GCACTAAGGGTGCGA
1 GCACTAAGTGTGCGA
25851693 TTTGATTACG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 17 0.46
28 20 0.54
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTAACCATGCA
Found at i:25851708 original size:55 final size:53
Alignment explanation
Indices: 25851568--25851719 Score: 178
Period size: 55 Copynumber: 2.8 Consensus size: 53
25851558 TAAATTGTAC
* * *
25851568 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAGGAATATG
1 AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAATATG
* ** * * *
25851621 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATG
1 A-GCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAA-TATG
* *
25851676 TAGCACTAAGGGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 -AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGA
25851720 GTTGAGTGAA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 39 0.48
55 40 0.49
56 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAATATG
Found at i:25851724 original size:27 final size:27
Alignment explanation
Indices: 25851569--25851724 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
25851559 AAATTGTACA
* *
25851569 GCACTAAGTGTGCG-ATTCGATTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
** *
25851596 GCACTAAGTGTGCGAAAGGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
25851623 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
25851650 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * * *
25851678 GCACTAAGGGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
25851705 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
25851725 GTGAATAGCA
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
27 82 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:25860116 original size:76 final size:78
Alignment explanation
Indices: 25860001--25860229 Score: 297
Period size: 76 Copynumber: 2.9 Consensus size: 78
25859991 AGCATTTGAA
* *
25860001 TGATAT-CCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAG
1 TGATATACCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAG
25860064 GCATTTGTGCGAGT
65 GCATTTGTGCGAGT
* *
25860078 TGCTATA-CGGGTTAAGACCCGAAGGCA-TGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGG
1 TGATATACCGGGCTAAGACCCGAAGGCATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGG
25860141 CATTTGTGCGAGT
66 CATTTGTGCGAGT
* * * * *
25860154 TGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGA
1 TGATATA-CCGGGCTAAGACCCGAAGGCA-TTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGA
*
25860218 AGGCAATTGTGC
63 AGGCATTTGTGC
25860230 TTGTGGTTAT
Statistics
Matches: 133, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
76 54 0.41
77 13 0.10
78 28 0.21
80 36 0.27
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (78 bp):
TGATATACCGGGCTAAGACCCGAAGGCATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGG
CATTTGTGCGAGT
Found at i:25860163 original size:40 final size:40
Alignment explanation
Indices: 25860003--25860229 Score: 279
Period size: 40 Copynumber: 5.8 Consensus size: 40
25859993 CATTTGAATG
* * *
25860003 ATATCCGGGCTAAG-TCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* *
25860042 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
25860082 ATA--CGGGTTAAGACCCGAAGGCA--TGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
25860118 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
25860158 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
25860198 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
25860230 TTGTGGTTAT
Statistics
Matches: 163, Mismatches: 17, Indels: 15
0.84 0.09 0.08
Matches are distributed among these distances:
35 2 0.01
36 10 0.06
38 38 0.23
39 13 0.08
40 95 0.58
41 5 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:25860190 original size:116 final size:118
Alignment explanation
Indices: 25860003--25860249 Score: 369
Period size: 116 Copynumber: 2.1 Consensus size: 118
25859993 CATTTGAATG
* * *
25860003 ATATCCGGGCTAAGTCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCAT
1 ATATCCGGGCTAAGCCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCAT
25860068 TTGTGCGAGTTGCTATA-CGGGTTAAGACCCGAAGGC-A-TGTGCTAGTGATT
66 TTGTGCGAGTTGCTATACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
25860118 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-CCCGAAGGCATTTATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGC
* *
25860182 ATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
64 ATTTGTGCGAGTTGCTATA-CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
25860238 ATATCC-GGCTAA
1 ATATCCGGGCTAA
25860250 ATTCCGAAGA
Statistics
Matches: 118, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
115 13 0.11
116 60 0.51
117 3 0.03
118 19 0.16
119 7 0.06
120 16 0.14
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (118 bp):
ATATCCGGGCTAAGCCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGCTATACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:25870923 original size:31 final size:31
Alignment explanation
Indices: 25870881--25870944 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
25870871 CCTTTTCATA
*
25870881 TTTCATTTTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
25870912 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
25870943 TT
1 TT
25870945 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:25871183 original size:23 final size:24
Alignment explanation
Indices: 25871152--25871257 Score: 171
Period size: 24 Copynumber: 4.4 Consensus size: 24
25871142 ATGGAGGCCT
25871152 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
25871176 AGCCCTTTTTTAATAACTGGGGCATA
1 AGCCC--TTTTAATAACTGGGGCATA
25871202 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
25871225 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
25871249 AGCCCTTTT
1 AGCCCTTTT
25871258 GCACTTCCTC
Statistics
Matches: 78, Mismatches: 0, Indels: 8
0.91 0.00 0.09
Matches are distributed among these distances:
23 24 0.31
24 31 0.40
25 17 0.22
26 6 0.08
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:25871245 original size:47 final size:47
Alignment explanation
Indices: 25871159--25871256 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 47
25871149 CCTAGCCTCT
25871159 TTTAATAACTGGGGCAAAGCCCTTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAGCCC-TTTTTAATAACTGGGGCATAAGCCC
25871207 TTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
25871254 TTT
1 TTT
25871257 TGCACTTCCT
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 27 0.55
48 16 0.33
49 6 0.12
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (47 bp):
TTTAATAACTGGGGCAAAGCCCTTTTTAATAACTGGGGCATAAGCCC
Found at i:25871329 original size:9 final size:9
Alignment explanation
Indices: 25871315--25871371 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
25871305 ATCTCGTGTG
25871315 CATATCATA
1 CATATCATA
*
25871324 CATATCATGTG
1 CATATCA--TA
25871335 CATATCATA
1 CATATCATA
* *
25871344 CATGTCATGTG
1 CATATCA--TA
25871355 CATATCATA
1 CATATCATA
25871364 CATATCAT
1 CATATCAT
25871372 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:25871334 original size:20 final size:20
Alignment explanation
Indices: 25871311--25871373 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
25871301 GAACATCTCG
25871311 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
25871331 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
25871351 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
25871371 TGT
1 TGT
25871374 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:25871438 original size:25 final size:25
Alignment explanation
Indices: 25871410--25871457 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
25871400 ATATATAAAC
* * *
25871410 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
25871435 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
25871458 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:25885017 original size:12 final size:12
Alignment explanation
Indices: 25885000--25885029 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
25884990 ATTACAGTGC
25885000 ATAAAAATAATA
1 ATAAAAATAATA
25885012 ATAAAAATAATA
1 ATAAAAATAATA
*
25885024 ACAAAA
1 ATAAAA
25885030 TGGAAGCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (12 bp):
ATAAAAATAATA
Found at i:25885936 original size:29 final size:28
Alignment explanation
Indices: 25885869--25885987 Score: 134
Period size: 29 Copynumber: 4.2 Consensus size: 28
25885859 TACATACAAG
*
25885869 CATATGGCCCACTAGGCCCAATCTTATT
1 CATATGGCCCACTAGGCCCAATCATATT
* *
25885897 CAAATGACCCATCT-GGCCCAATTCATATT
1 CATATGGCCCA-CTAGGCCCAA-TCATATT
* *
25885926 CTTATGGCCCACTAGGCCCAATTCACATT
1 CATATGGCCCACTAGGCCCAA-TCATATT
*
25885955 CATATGGCCCATTAGGCCGCAATCATATT
1 CATATGGCCCACTAGGCC-CAATCATATT
25885984 -ATAT
1 CATAT
25885988 TCATGCTCAC
Statistics
Matches: 77, Mismatches: 10, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
28 22 0.29
29 52 0.68
30 3 0.04
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.29
Consensus pattern (28 bp):
CATATGGCCCACTAGGCCCAATCATATT
Found at i:25895699 original size:19 final size:19
Alignment explanation
Indices: 25895644--25895699 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
25895634 TTTAAGTGAG
*
25895644 AGGTTAATTAGATTTTAATTA
1 AGGTTAATTA-AGTTT-ATTA
* * *
25895665 A-GTAAATTTAGCTTATTA
1 AGGTTAATTAAGTTTATTA
25895683 AGGTTAATTAAGTTTAT
1 AGGTTAATTAAGTTTAT
25895700 GGATTAAATT
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
18 5 0.19
19 15 0.56
20 6 0.22
21 1 0.04
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.46
Consensus pattern (19 bp):
AGGTTAATTAAGTTTATTA
Found at i:25899513 original size:47 final size:47
Alignment explanation
Indices: 25899462--25899771 Score: 503
Period size: 47 Copynumber: 6.6 Consensus size: 47
25899452 GATAATTGTG
* *
25899462 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25899509 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25899558 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25899605 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25899652 ATGTGGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
25899699 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAAGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25899746 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
25899772 TCCCGAAGGG
Statistics
Matches: 247, Mismatches: 14, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 200 0.81
49 47 0.19
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:25899946 original size:37 final size:37
Alignment explanation
Indices: 25899890--25899968 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
25899880 CCGAGCTCTA
* * *
25899890 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
25899927 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
25899964 AAGAC
1 AAGAC
25899969 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:25921421 original size:17 final size:18
Alignment explanation
Indices: 25921380--25921422 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
25921370 TGTATTTACT
25921380 TATTATATAAGTAAATAA
1 TATTATATAAGTAAATAA
* *
25921398 TAATATA-AAGTAAATTA
1 TATTATATAAGTAAATAA
*
25921415 TTTTATAT
1 TATTATAT
25921423 TATATAATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (18 bp):
TATTATATAAGTAAATAA
Found at i:25935934 original size:29 final size:29
Alignment explanation
Indices: 25935874--25935947 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
25935864 TAATCAACCG
* *
25935874 CGCACACTTAGTTCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
**
25935903 CGCACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
*
25935932 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
25935948 ATCTCACAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 3 0.08
29 36 0.92
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:25940840 original size:21 final size:20
Alignment explanation
Indices: 25940792--25940841 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
25940782 TCTTTATGTT
* *
25940792 TTATTTCTTTTATTTTCTTTA
1 TTATTT-TTTTATTTTATTAA
25940813 TTCATTTTTTTATTTTATTAA
1 TT-ATTTTTTTATTTTATTAA
25940834 TATATTTT
1 T-TATTTT
25940842 AATTATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (20 bp):
TTATTTTTTTATTTTATTAA
Found at i:25941669 original size:21 final size:21
Alignment explanation
Indices: 25941645--25941691 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
25941635 TGAGACTTCA
* * *
25941645 AAAATAAATAGAAATAAAAGT
1 AAAATAAATAAAAACAAAAAT
25941666 AAAATAAATAAAAACAAAAAT
1 AAAATAAATAAAAACAAAAAT
25941687 AAAAT
1 AAAAT
25941692 GAGTTTGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.17
Consensus pattern (21 bp):
AAAATAAATAAAAACAAAAAT
Found at i:25949667 original size:54 final size:54
Alignment explanation
Indices: 25949579--25949709 Score: 183
Period size: 54 Copynumber: 2.4 Consensus size: 54
25949569 ATATTGCGAT
* * * *
25949579 ATTACCAGTCCAGGCTAAATCCCCCGTAATATCAACTCATAAGGTGA-TGCCGTG
1 ATTACCAGTCCAGGCTAAATCCCCAGTAACATCAACTCATAAAGTGATTGCAG-G
* *
25949633 ATTACCAGTCTAGGCTAAATCCCCAGTAACATCAACTCATAAAGTGATTTCAGG
1 ATTACCAGTCCAGGCTAAATCCCCAGTAACATCAACTCATAAAGTGATTGCAGG
*
25949687 ATTACCAGTCCAGACTAAATCCC
1 ATTACCAGTCCAGGCTAAATCCC
25949710 TTGTAGTGAC
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 65 0.96
55 3 0.04
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.24
Consensus pattern (54 bp):
ATTACCAGTCCAGGCTAAATCCCCAGTAACATCAACTCATAAAGTGATTGCAGG
Found at i:25956900 original size:39 final size:40
Alignment explanation
Indices: 25956823--25956969 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
25956813 TAGCTCCTCG
* * *
25956823 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
25956863 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
25956902 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
25956942 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
25956970 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:25956980 original size:80 final size:80
Alignment explanation
Indices: 25956869--25957049 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
25956859 CTCATTCAAT
* * *
25956869 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
25956932 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
25956948 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
25957012 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
25957029 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
25957050 CAGCAATTAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:25957009 original size:40 final size:40
Alignment explanation
Indices: 25956866--25957049 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
25956856 TAACTCATTC
* *
25956866 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
25956906 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
25956946 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
25956986 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
25957027 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
25957050 CAGCAATTAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:25964713 original size:39 final size:40
Alignment explanation
Indices: 25964636--25964742 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
25964626 TAGCTCCTCG
* * *
25964636 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATATTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATATAAACTCA
* *
25964676 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCA
**
25964715 CACGAATGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
25964743 ATTAGTATCT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 25 0.43
40 33 0.57
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCA
Found at i:25964731 original size:40 final size:39
Alignment explanation
Indices: 25964679--25964809 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 39
25964669 TAACTCATTC
* *
25964679 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACA
* *
25964719 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACA
* *
25964759 AAGGCCTTCGGGACTTAACCTGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
*
25964799 AATACCTTCGG
1 AATGCCTTCGG
25964810 ATCTTAGTCC
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 76 0.96
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:25986083 original size:23 final size:23
Alignment explanation
Indices: 25986053--25986098 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
25986043 GAAAAAAGTA
*
25986053 AACTATGACGGGTAATTGTCGTG
1 AACTATGACGAGTAATTGTCGTG
25986076 AACTATGACGAGTAATTGTCGTG
1 AACTATGACGAGTAATTGTCGTG
25986099 TAACCCTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (23 bp):
AACTATGACGAGTAATTGTCGTG
Found at i:25991857 original size:33 final size:33
Alignment explanation
Indices: 25991805--25991897 Score: 125
Period size: 33 Copynumber: 2.8 Consensus size: 33
25991795 TAGGAGGAGT
*
25991805 GAGGAGTAGAGTACTGCGGTGGATACGGGTCGG
1 GAGGAGTGGAGTACTGCGGTGGATACGGGTCGG
** *
25991838 G-GGCAGTGTTGTACTGCGGTGGATACGGGTTGG
1 GAGG-AGTGGAGTACTGCGGTGGATACGGGTCGG
*
25991871 GAGGAGTGGAGTACTACGGTGGATACG
1 GAGGAGTGGAGTACTGCGGTGGATACG
25991898 AGCCAGGGGT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
32 2 0.04
33 47 0.92
34 2 0.04
ACGTcount: A:0.19, C:0.12, G:0.47, T:0.22
Consensus pattern (33 bp):
GAGGAGTGGAGTACTGCGGTGGATACGGGTCGG
Found at i:25991926 original size:66 final size:66
Alignment explanation
Indices: 25991805--25991929 Score: 160
Period size: 66 Copynumber: 1.9 Consensus size: 66
25991795 TAGGAGGAGT
* * * * * * *
25991805 GAGGAGTAGAGTACTGCGGTGGATACGGGTCGGGGGCAGTGTTGTACTGCGGTGGATACGGGTTG
1 GAGGAGTAGAGTACTACGGTGGATACGAGCCAGGGGCAGTGCTATACTGCAGTGGATACGGGTTG
25991870 G
66 G
* * *
25991871 GAGGAGTGGAGTACTACGGTGGATACGAGCCAGGGGTAGTGCTATGCTGCAGTGGATAC
1 GAGGAGTAGAGTACTACGGTGGATACGAGCCAGGGGCAGTGCTATACTGCAGTGGATAC
25991930 AAGCCAGGGG
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
66 49 1.00
ACGTcount: A:0.20, C:0.14, G:0.45, T:0.22
Consensus pattern (66 bp):
GAGGAGTAGAGTACTACGGTGGATACGAGCCAGGGGCAGTGCTATACTGCAGTGGATACGGGTTG
G
Found at i:25991959 original size:33 final size:33
Alignment explanation
Indices: 25991881--25991964 Score: 114
Period size: 33 Copynumber: 2.5 Consensus size: 33
25991871 GAGGAGTGGA
* *
25991881 GTACTACGGTGGATACGAGCCAGGGGTAGTGCT
1 GTACTACGGTGGATACAAGCCAGGGGAAGTGCT
* * * *
25991914 ATGCTGCAGTGGATACAAGCCAGGGGAAGTGCT
1 GTACTACGGTGGATACAAGCCAGGGGAAGTGCT
25991947 GTACTACGGTGGATACAA
1 GTACTACGGTGGATACAA
25991965 CCCAAAGATA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.26, C:0.18, G:0.36, T:0.20
Consensus pattern (33 bp):
GTACTACGGTGGATACAAGCCAGGGGAAGTGCT
Found at i:25994920 original size:10 final size:10
Alignment explanation
Indices: 25994905--25994930 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
25994895 AAATTACCTT
25994905 TTTTTCTTTC
1 TTTTTCTTTC
25994915 TTTTTCTTTC
1 TTTTTCTTTC
25994925 TTTTTC
1 TTTTTC
25994931 CTTCCATCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:25995019 original size:19 final size:18
Alignment explanation
Indices: 25994995--25995035 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
25994985 CAGTGCCGCC
*
25994995 TTCTTCTCCTTCTCTTCTT
1 TTCTTCTCCTTCCCTT-TT
25995014 TTCTTCTCCTTCCCTTTT
1 TTCTTCTCCTTCCCTTTT
25995032 TTCT
1 TTCT
25995036 CCTTCACTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (18 bp):
TTCTTCTCCTTCCCTTTT
Found at i:25995037 original size:15 final size:16
Alignment explanation
Indices: 25994995--25995040 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 16
25994985 CAGTGCCGCC
25994995 TTCTTCTCCTTCTCTTCTT
1 TTCTTCTCCTTC-C--CTT
25995014 TTCTTCTCCTTCCCTT
1 TTCTTCTCCTTCCCTT
25995030 TT-TTCTCCTTC
1 TTCTTCTCCTTC
25995041 ACTCACACAC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 9 0.33
16 5 0.19
18 1 0.04
19 12 0.44
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (16 bp):
TTCTTCTCCTTCCCTT
Found at i:25995182 original size:27 final size:27
Alignment explanation
Indices: 25995147--25995204 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
25995137 AGTGGGTGTC
* * *
25995147 GCCTTTGGCAGCCCCACCATTGGTGCA
1 GCCTATGGCAGCCCCACAACTGGTGCA
* *
25995174 GCCTATGGCAGTCCCACAACTGGTGCC
1 GCCTATGGCAGCCCCACAACTGGTGCA
25995201 GCCT
1 GCCT
25995205 CTGACATGCC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.16, C:0.38, G:0.26, T:0.21
Consensus pattern (27 bp):
GCCTATGGCAGCCCCACAACTGGTGCA
Found at i:26022423 original size:30 final size:30
Alignment explanation
Indices: 26022389--26022445 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
26022379 AAGTATTTTT
* *
26022389 AAAATTTGGTTACTCTTTTTGTAAATAATA
1 AAAATTTGATGACTCTTTTTGTAAATAATA
*
26022419 AAAATTTGATGCCTCTTTTTGTAAATA
1 AAAATTTGATGACTCTTTTTGTAAATA
26022446 TTTTCAAAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.46
Consensus pattern (30 bp):
AAAATTTGATGACTCTTTTTGTAAATAATA
Found at i:26022730 original size:17 final size:18
Alignment explanation
Indices: 26022704--26022737 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26022694 CTTATTTTTA
26022704 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
26022721 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
26022738 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:26022905 original size:25 final size:25
Alignment explanation
Indices: 26022877--26022925 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
26022867 TTTTCTCCTA
*
26022877 AATTTTT-AATTTTATTTAATTATTT
1 AATTTTTCAA-TTTATTGAATTATTT
26022902 AATTTTTCAATTTATTGAATTATT
1 AATTTTTCAATTTATTGAATTATT
26022926 AATAATTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (25 bp):
AATTTTTCAATTTATTGAATTATTT
Found at i:26028760 original size:29 final size:29
Alignment explanation
Indices: 26028728--26028796 Score: 129
Period size: 29 Copynumber: 2.4 Consensus size: 29
26028718 TGTGTATAAT
26028728 TACATCAAATTAAAATTCATATAAAATTG
1 TACATCAAATTAAAATTCATATAAAATTG
*
26028757 TACATCAAATAAAAATTCATATAAAATTG
1 TACATCAAATTAAAATTCATATAAAATTG
26028786 TACATCAAATT
1 TACATCAAATT
26028797 TACAATAGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.52, C:0.12, G:0.03, T:0.33
Consensus pattern (29 bp):
TACATCAAATTAAAATTCATATAAAATTG
Found at i:26028768 original size:17 final size:17
Alignment explanation
Indices: 26028748--26028795 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
26028738 TAAAATTCAT
26028748 ATAAAATTGTACATCAA
1 ATAAAATTGTACATCAA
*
26028765 ATAAAAAT-T-CAT---
1 ATAAAATTGTACATCAA
26028777 ATAAAATTGTACATCAA
1 ATAAAATTGTACATCAA
26028794 AT
1 AT
26028796 TTACAATAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 10
0.67 0.06 0.28
Matches are distributed among these distances:
12 7 0.29
13 1 0.04
14 3 0.12
15 3 0.12
16 1 0.04
17 9 0.38
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.31
Consensus pattern (17 bp):
ATAAAATTGTACATCAA
Found at i:26028911 original size:20 final size:22
Alignment explanation
Indices: 26028876--26028933 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
26028866 ACATGTTAGC
**
26028876 AAACAAATATGAATAT-AAAT-
1 AAACAAATATTTATATAAAATA
*
26028896 AGACAAATATTTATATAAAATA
1 AAACAAATATTTATATAAAATA
*
26028918 AAATAAATATTTATAT
1 AAACAAATATTTATAT
26028934 TTAAAATATT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 13 0.42
21 4 0.13
22 14 0.45
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (22 bp):
AAACAAATATTTATATAAAATA
Found at i:26030922 original size:79 final size:81
Alignment explanation
Indices: 26030786--26030970 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
26030776 TTGAATGATG
* *
26030786 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
26030850 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
26030865 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
26030927 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
26030945 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26030971 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:26030984 original size:40 final size:40
Alignment explanation
Indices: 26030787--26030970 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
26030777 TGAATGATGT
* * * *
26030787 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
26030827 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
26030867 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
26030905 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26030946 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26030971 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:26030992 original size:79 final size:79
Alignment explanation
Indices: 26030839--26031003 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
26030829 GGACTAAGAT
* * **
26030839 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
26030904 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
26030918 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
26030981 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
26030997 CCGAAGG
1 CCGAAGG
26031004 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:26037894 original size:48 final size:49
Alignment explanation
Indices: 26037780--26038166 Score: 612
Period size: 48 Copynumber: 8.0 Consensus size: 49
26037770 TAGCTAAGAG
*
26037780 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
26037827 ATACACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
26037875 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAA
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
* *
26037924 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAATCAC--ATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTT-ATCACATATAT
*
26037972 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
26038021 ACACACTTTCA-ATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
* *
26038069 A-ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATTCACA-ATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA-TCACATATAT
26038117 ATACACTTTTCACATTCATCACATCGGCCATTAGGCCTTAT-ACATATAT
1 ATACAC-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
26038166 A
1 A
26038167 ACATTCACAT
Statistics
Matches: 315, Mismatches: 14, Indels: 20
0.90 0.04 0.06
Matches are distributed among these distances:
46 8 0.03
47 47 0.15
48 146 0.46
49 78 0.25
50 36 0.11
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
Found at i:26037989 original size:97 final size:96
Alignment explanation
Indices: 26037780--26038176 Score: 610
Period size: 97 Copynumber: 4.1 Consensus size: 96
26037770 TAGCTAAGAG
*
26037780 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
26037843 ATCACATCGGCCATTAGG-CTTATCACATATAT
66 ATCACATCGGCCATTAGGCCTTATCAC--ATAT
*
26037875 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAAATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
* *
26037940 ATCACATTGGCCATTCGGCCTTAATCACATAT
66 ATCACATCGGCCATTAGGCCTT-ATCACATAT
* *
26037972 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACACTTTCA-ATTC
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
26038036 ATCACATCGGCCATTAGGCCTTATCACATAT
66 ATCACATCGGCCATTAGGCCTTATCACATAT
* *
26038067 ATAACACTTTCACATTCATCACATTGGCCATTCGGCCTTATTCACA-ATATATACACTTTTCACA
1 AT-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTA-TCACATATATATACAC-TTTCACA
26038131 TTCATCACATCGGCCATTAGGCCTTAT-ACATAT
63 TTCATCACATCGGCCATTAGGCCTTATCACATAT
*
26038164 ATA-ACATTCACAT
1 ATACACTTTCACAT
26038177 CACAATTATC
Statistics
Matches: 280, Mismatches: 14, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
95 62 0.22
96 68 0.24
97 114 0.41
98 31 0.11
99 5 0.02
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (96 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
ATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:26038042 original size:145 final size:146
Alignment explanation
Indices: 26037780--26038166 Score: 658
Period size: 145 Copynumber: 2.7 Consensus size: 146
26037770 TAGCTAAGAG
* * *
26037780 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTT-ATCACATATATACACTTTCACATTCA
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAATCACATATATACACTTTCACATTCA
*
26037844 TCACATCGGCCATTAGG-CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
66 TCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAG
26037908 GCCTTATCACATATAA
131 GCCTTATCACATATAA
26037924 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAATCACATATATACACTTTCACATTCA
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAATCACATATATACACTTTCACATTCA
*
26037989 TCACATCGGCTATTAGGCCTTATCACATATATACACACTTTCA-ATTCATCACATCGGCCATTAG
66 TCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAG
*
26038053 GCCTTATCACATATAT
131 GCCTTATCACATATAA
*
26038069 A-ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATTCACAATATATACACTTTTCACATT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAATCAC-ATATATACAC-TTTCACATT
26038133 CATCACATCGGCCATTAGGCCTTAT-ACATATATA
64 CATCACATCGGCCATTAGGCCTTATCACATATATA
26038167 ACATTCACAT
Statistics
Matches: 231, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
144 76 0.33
145 98 0.42
146 57 0.25
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (146 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAG
GCCTTATCACATATAA
Found at i:26047917 original size:27 final size:27
Alignment explanation
Indices: 26047878--26047957 Score: 83
Period size: 26 Copynumber: 3.0 Consensus size: 27
26047868 TTTAGATACT
* *
26047878 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-GTAAAATTACTGAAATACCC
*
26047906 TTAGTTTGTAAAA-TATTGAAATACCC
1 TTAGTTTGTAAAATTACTGAAATACCC
* *
26047932 -TCGATTTGTAAAATTACTAAAATACC
1 TTAG-TTTGTAAAATTACTGAAATACC
26047958 TCGACTTGTA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
25 2 0.05
26 20 0.45
27 15 0.34
28 7 0.16
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACTGAAATACCC
Found at i:26047959 original size:26 final size:26
Alignment explanation
Indices: 26047910--26047983 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
26047900 ATACCCTTAG
* *
26047910 TTTGTAAAA-TATTGAAATACCCTCGA
1 TTTGTAAAATTACTAAAATA-CCTCGA
26047936 TTTGTAAAATTACTAAAATACCTCGA
1 TTTGTAAAATTACTAAAATACCTCGA
* * *
26047962 CTTGTAAAATTACCAAAGTACC
1 TTTGTAAAATTACTAAAATACC
26047984 CCTGATTTAC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 34 0.81
27 8 0.19
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (26 bp):
TTTGTAAAATTACTAAAATACCTCGA
Found at i:26048156 original size:78 final size:79
Alignment explanation
Indices: 26047980--26048178 Score: 242
Period size: 78 Copynumber: 2.5 Consensus size: 79
26047970 ATTACCAAAG
* * *
26047980 TACCCCTGATTTACAGAATTACCGTTTTACCCTCGATTTACATAATTACCGTTTTACCCCTAATT
1 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCCTAATT
*
26048045 TACATATCTATCGT
66 TAAATATCTATCGT
* * * *
26048059 TACCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAGAATT-CCGTTTTACCCTTGATT
1 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCCTAATT
*
26048123 TAGAAT-TACTAT-TT
66 TA-AATAT-CTATCGT
* * **
26048137 TACCTTTGATTTACAGAATTACTATTTTAAGCTCGATTTACA
1 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACA
26048179 ATTACTAAAA
Statistics
Matches: 103, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
78 55 0.53
79 48 0.47
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (79 bp):
TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCCTAATT
TAAATATCTATCGT
Found at i:26048162 original size:27 final size:27
Alignment explanation
Indices: 26047980--26048165 Score: 170
Period size: 27 Copynumber: 7.1 Consensus size: 27
26047970 ATTACCAAAG
* *
26047980 TACCCCTGATTTACAGAATTACCGTTT
1 TACCCTTGATTTACAGAATTACTGTTT
* * *
26048007 TACCCTCGATTTACATAATTACCGTTT
1 TACCCTTGATTTACAGAATTACTGTTT
* * *
26048034 TACCCCTAATTTACA-TATCTA-TCG--T
1 TACCCTTGATTTACAGAAT-TACT-GTTT
* *
26048059 TACCCTCGACTTACAGAATTACTGTTT
1 TACCCTTGATTTACAGAATTACTGTTT
* *
26048086 TACCCTCGATTTACAGAATT-CCGTTT
1 TACCCTTGATTTACAGAATTACTGTTT
*
26048112 TACCCTTGATTT--AGAATTACTATTT
1 TACCCTTGATTTACAGAATTACTGTTT
* *
26048137 TACCTTTGATTTACAGAATTACTATTT
1 TACCCTTGATTTACAGAATTACTGTTT
26048164 TA
1 TA
26048166 AGCTCGATTT
Statistics
Matches: 131, Mismatches: 19, Indels: 18
0.78 0.11 0.11
Matches are distributed among these distances:
24 6 0.05
25 30 0.23
26 21 0.16
27 74 0.56
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTTGATTTACAGAATTACTGTTT
Found at i:26048174 original size:27 final size:27
Alignment explanation
Indices: 26047987--26048185 Score: 121
Period size: 27 Copynumber: 7.6 Consensus size: 27
26047977 AAGTACCCCT
** *
26047987 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACTATTTTAACCTC
* ** *
26048014 GATTTACATAATTACCGTTTT-ACCCC
1 GATTTACAGAATTACTATTTTAACCTC
* * * *
26048040 TAATTTACA-TA-T-CTATCGTTACCCTC
1 -GATTTACAGAATTACTAT-TTTAACCTC
* * *
26048066 GACTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACTATTTTAACCTC
** * *
26048093 GATTTACAGAATT-CCGTTTTACCCTT
1 GATTTACAGAATTACTATTTTAACCTC
*
26048119 GATTT--AGAATTACTATTTT-ACCTTT
1 GATTTACAGAATTACTATTTTAACC-TC
*
26048144 GATTTACAGAATTACTATTTTAAGCTC
1 GATTTACAGAATTACTATTTTAACCTC
26048171 GATTTAC--AATTACTA
1 GATTTACAGAATTACTA
26048186 AAATACCCTT
Statistics
Matches: 138, Mismatches: 23, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
24 10 0.07
25 29 0.21
26 24 0.17
27 70 0.51
28 5 0.04
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
GATTTACAGAATTACTATTTTAACCTC
Found at i:26048310 original size:27 final size:27
Alignment explanation
Indices: 26048178--26048310 Score: 83
Period size: 27 Copynumber: 4.9 Consensus size: 27
26048168 CTCGATTTAC
* * **
26048178 AATTACTAAAATACCCTTAATTTGTAA
1 AATTACTGAAATACCCTTAGTTTACAA
** *
26048205 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACTGAAATACCCTTAG-TTTACAA
* * *
26048232 AGTTACAGAAATACCCTTGACTTT-CTAAA
1 AATTACTGAAATACCCTT-AGTTTAC--AA
** *
26048261 AATTA-TAGAAATACTATTGGTTTACAA
1 AATTACT-GAAATACCCTTAGTTTACAA
26048288 AATTACTGAAATACCCTTAGTTT
1 AATTACTGAAATACCCTTAGTTT
26048311 GTAGATTACC
Statistics
Matches: 79, Mismatches: 19, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
27 56 0.71
28 7 0.09
29 16 0.20
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.34
Consensus pattern (27 bp):
AATTACTGAAATACCCTTAGTTTACAA
Found at i:26048426 original size:27 final size:27
Alignment explanation
Indices: 26048349--26048426 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
26048339 GAAATGACTA
* *
26048349 AATACCCCT-AATAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
26048376 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
26048403 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
26048427 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 39 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:26049674 original size:20 final size:20
Alignment explanation
Indices: 26049635--26049704 Score: 106
Period size: 20 Copynumber: 3.5 Consensus size: 20
26049625 ATTTTGATAA
26049635 ACATGATATGTATG-TATGC
1 ACATGATATGTATGATATGC
* *
26049654 ACATGACATGAATGATATGC
1 ACATGATATGTATGATATGC
26049674 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
26049694 ACATGAGATGT
1 ACATGATATGT
26049705 TCCTAAATGC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
19 12 0.27
20 33 0.73
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:26049681 original size:11 final size:11
Alignment explanation
Indices: 26049649--26049699 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 11
26049639 GATATGTATG
26049649 TATGCACATGA
1 TATGCACATGA
*
26049660 CATG-A-ATGA
1 TATGCACATGA
26049669 TATGCACATGA
1 TATGCACATGA
*
26049680 TATG--TATGA
1 TATGCACATGA
26049689 TATGCACATGA
1 TATGCACATGA
26049700 GATGTTCCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
9 15 0.47
10 2 0.06
11 15 0.47
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (11 bp):
TATGCACATGA
Found at i:26049850 original size:24 final size:24
Alignment explanation
Indices: 26049751--26049942 Score: 234
Period size: 24 Copynumber: 8.0 Consensus size: 24
26049741 AGGAAGTGCA
26049751 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
26049774 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
26049797 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
26049822 AAAGGGCTTATGCCCCAGTT-TGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
* *
26049846 GAAGGGCTTATG-CCCAGTTGTGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
* *
26049870 AAAAGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
*
26049894 AAAGGGCTTTTGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
26049918 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
26049943 GATTAAAGCC
Statistics
Matches: 152, Mismatches: 9, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
23 52 0.34
24 59 0.39
25 41 0.27
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:26050184 original size:28 final size:30
Alignment explanation
Indices: 26050130--26050190 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
26050120 TCGTTTCAGT
26050130 AAAAGCTTCGGCCCAGTAATATAAAAT-TG
1 AAAAGCTTCGGCCCAGTAATATAAAATATG
** *
26050159 AAAAGCTTCGG-CCAGTGTTATGAAATATG
1 AAAAGCTTCGGCCCAGTAATATAAAATATG
26050188 AAA
1 AAA
26050191 TAGAAAGGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 12 0.43
29 16 0.57
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.25
Consensus pattern (30 bp):
AAAAGCTTCGGCCCAGTAATATAAAATATG
Found at i:26055386 original size:1 final size:1
Alignment explanation
Indices: 26055382--26055465 Score: 96
Period size: 1 Copynumber: 84.0 Consensus size: 1
26055372 AAAAAATTAC
* ** * **
26055382 AAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAATCACAAAAAAAATCAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
26055447 CAAAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAA
26055466 TATGAAGATT
Statistics
Matches: 69, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
1 69 1.00
ACGTcount: A:0.90, C:0.07, G:0.00, T:0.02
Consensus pattern (1 bp):
A
Found at i:26055424 original size:50 final size:49
Alignment explanation
Indices: 26055370--26055466 Score: 151
Period size: 49 Copynumber: 2.0 Consensus size: 49
26055360 GAAGTAGCAT
*
26055370 CAAAAAAATTACAAAAAAAAAAAAAAAA-AAAACAAAAAAAAAAAAAATCA
1 CAAAAAAAAT-CAAAAAAAAAAAAAAAACAAAA-AAAAAAAAAAAAAATCA
*
26055420 CAAAAAAAATCAAAAAAAAAAAAAAAACAAAAAAACAAAAAAAAAAT
1 CAAAAAAAATCAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAT
26055467 ATGAAGATTC
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
49 31 0.70
50 13 0.30
ACGTcount: A:0.87, C:0.08, G:0.00, T:0.05
Consensus pattern (49 bp):
CAAAAAAAATCAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAATCA
Found at i:26061656 original size:22 final size:21
Alignment explanation
Indices: 26061574--26061660 Score: 95
Period size: 23 Copynumber: 3.9 Consensus size: 21
26061564 CATTCCATCG
*
26061574 ATAACGTGGGCATAAGCCCTTT
1 ATAAC-TGGGGATAAGCCCTTT
26061596 ATCAGACTGGGGATAAGCCCTTT
1 AT-A-ACTGGGGATAAGCCCTTT
26061619 AAGTAACTGGGGATAA-CCCTGTT
1 -A-TAACTGGGGATAAGCCCT-TT
26061642 ATAACTGGGGCATAAGCCC
1 ATAACTGGGG-ATAAGCCC
26061661 ATTTTGCACT
Statistics
Matches: 57, Mismatches: 1, Indels: 13
0.80 0.01 0.18
Matches are distributed among these distances:
21 9 0.16
22 11 0.19
23 32 0.56
24 4 0.07
25 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (21 bp):
ATAACTGGGGATAAGCCCTTT
Found at i:26061749 original size:20 final size:20
Alignment explanation
Indices: 26061710--26061779 Score: 58
Period size: 20 Copynumber: 3.5 Consensus size: 20
26061700 GCATATCTGA
*
26061710 ACATCTCATGTG-ATATTCAT
1 ACATATCATGTGCATA-TCAT
26061730 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
* *
26061750 TCATTGTC-TGTGCATATC-T
1 ACA-TATCATGTGCATATCAT
26061769 AACATAT-ATGT
1 -ACATATCATGT
26061780 TTATTCAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
19 6 0.15
20 29 0.71
21 6 0.15
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:26063384 original size:28 final size:28
Alignment explanation
Indices: 26063333--26063395 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 28
26063323 TTTGTAACGA
* *
26063333 GCTTAAAATAGTACATTCTGTAAATCAAAG
1 GCTT-AAATAGGACATTCTATAAATC-AAG
26063363 GCTTAAATAGGA-ATTCTATAAATCAAG
1 GCTTAAATAGGACATTCTATAAATCAAG
26063390 G-TTAAA
1 GCTTAAA
26063396 CAAGAGGGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 5 0.16
27 4 0.13
28 11 0.35
29 7 0.23
30 4 0.13
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.30
Consensus pattern (28 bp):
GCTTAAATAGGACATTCTATAAATCAAG
Found at i:26063497 original size:30 final size:30
Alignment explanation
Indices: 26063479--26063540 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 30
26063469 TTGTAAATTA
26063479 GGGTAAAACGAGGTAATTATGTAAATCGAG
1 GGGTAAAACGAGGTAATTATGTAAATCGAG
*
26063509 GGGTAAAAC--GGTAATTCTGTAAATC-AG
1 GGGTAAAACGAGGTAATTATGTAAATCGAG
26063536 GGGTA
1 GGGTA
26063541 CTTTGGTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
27 7 0.23
28 15 0.48
30 9 0.29
ACGTcount: A:0.37, C:0.08, G:0.31, T:0.24
Consensus pattern (30 bp):
GGGTAAAACGAGGTAATTATGTAAATCGAG
Found at i:26063501 original size:28 final size:26
Alignment explanation
Indices: 26063461--26063537 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 26
26063451 GGGTAACGGA
*
26063461 GTAATTAATTGTAAATTAGGGTAAAACGAG
1 GTAATT-A-TGTAAATCAGGGTAAAAC--G
26063491 GTAATTATGTAAATCGAGGGGTAAAACG
1 GTAATTATGTAAATC-A-GGGTAAAACG
*
26063519 GTAATTCTGTAAATCAGGG
1 GTAATTATGTAAATCAGGG
26063538 GTACTTTGGT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
26 3 0.07
27 1 0.02
28 22 0.51
29 2 0.05
30 15 0.35
ACGTcount: A:0.39, C:0.06, G:0.26, T:0.29
Consensus pattern (26 bp):
GTAATTATGTAAATCAGGGTAAAACG
Found at i:26063567 original size:27 final size:27
Alignment explanation
Indices: 26063537--26063611 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
26063527 GTAAATCAGG
* *
26063537 GGTACTTTGGTAATTTTACAAGTCGAA
1 GGTACTTTAGTAATTTTACAAATCGAA
* *
26063564 GGTATTTTAGTAATTTTACAAATCGAG
1 GGTACTTTAGTAATTTTACAAATCGAA
* *
26063591 GGTA-TTTCAATATTTTTACAA
1 GGTACTTT-AGTAATTTTACAA
26063612 CTAAGGGTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.07
27 38 0.93
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.41
Consensus pattern (27 bp):
GGTACTTTAGTAATTTTACAAATCGAA
Found at i:26063633 original size:26 final size:26
Alignment explanation
Indices: 26063546--26063634 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 26
26063536 GGGTACTTTG
* *
26063546 GTAATTTTACAAGTCGAA-GGTATTTTA
1 GTAATTTTACAA--CTAAGGGTATTTCA
* *
26063573 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAACT-AAGGGTATTTCA
* * *
26063600 ATATTTTTACAACTAAGGGTATTTCG
1 GTAATTTTACAACTAAGGGTATTTCA
26063626 GTAATTTTA
1 GTAATTTTA
26063635 GTAAACTAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
26 18 0.37
27 31 0.63
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.42
Consensus pattern (26 bp):
GTAATTTTACAACTAAGGGTATTTCA
Found at i:26067264 original size:44 final size:44
Alignment explanation
Indices: 26067172--26067264 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
26067162 ATACGATGCA
* *
26067172 ATGTCCTAGACATGGTCTTACACGTAAATCTCAAATCGAAGTCG
1 ATGTCCTAGACATGGTCTTACACGTAAATCACAAATCGAAATCG
* **
26067216 ATGTCCTAGACATGGTCTTACACG-ATATCACATCTCGAAATCG
1 ATGTCCTAGACATGGTCTTACACGTAAATCACAAATCGAAATCG
26067259 TATGTC
1 -ATGTC
26067265 ATGACATATG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
43 14 0.33
44 29 0.67
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (44 bp):
ATGTCCTAGACATGGTCTTACACGTAAATCACAAATCGAAATCG
Found at i:26069422 original size:39 final size:39
Alignment explanation
Indices: 26069323--26069423 Score: 103
Period size: 40 Copynumber: 2.6 Consensus size: 39
26069313 GACTAAAGAT
* * * *
26069323 CCGAAGGAAATTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCAATTGTGCGAGTTACTAAATCCAGGCTAAGC
* * * * *
26069362 CCCAAGCGCATTTGTGAGAGTTACTAAATCCAGGTTAATC
1 CCGAAG-GCAATTGTGCGAGTTACTAAATCCAGGCTAAGC
*
26069402 CCGAAGGCAGTTGTGCGAGTTA
1 CCGAAGGCAATTGTGCGAGTTA
26069424 TATAACCGGG
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
39 19 0.39
40 30 0.61
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGAAGGCAATTGTGCGAGTTACTAAATCCAGGCTAAGC
Found at i:26072272 original size:44 final size:44
Alignment explanation
Indices: 26072224--26072316 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
26072214 CATATGTCAT
* *
26072224 GACATACGATTTCGAGATGTGATAT-CGTGTAAGACCATGTCTAG
1 GACAT-CGACTTCGAGATGAGATATACGTGTAAGACCATGTCTAG
** *
26072268 GACATCGACTTCGATTTGAGATTTACGTGTAAGACCATGTCTAG
1 GACATCGACTTCGAGATGAGATATACGTGTAAGACCATGTCTAG
26072312 GACAT
1 GACAT
26072317 TGGCATCGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
43 14 0.33
44 29 0.67
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (44 bp):
GACATCGACTTCGAGATGAGATATACGTGTAAGACCATGTCTAG
Found at i:26075928 original size:27 final size:28
Alignment explanation
Indices: 26075898--26075997 Score: 91
Period size: 27 Copynumber: 3.7 Consensus size: 28
26075888 TTTAGTTTAC
26075898 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* ** *
26075925 TAAAAATATTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
** * *
26075952 TAAAATTACTAAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
26075979 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
26075998 CTGATTTACA
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
26 7 0.12
27 51 0.85
28 2 0.03
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:26076067 original size:81 final size:81
Alignment explanation
Indices: 26075979--26076250 Score: 267
Period size: 81 Copynumber: 3.4 Consensus size: 81
26075969 CTTCGACTTG
* * *
26075979 TAAAATTACCAAAGTACCCCTGATTTACAGAATTACCGTTTTACCCTCGATTTACATAATTACCG
1 TAAAATTACCAAATTACCCCTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCG
*
26076044 TTTTACCCCTAATTTA
66 TTTTACCCTTAATTTA
* * * *** * *
26076060 CATAATTATCGTTTTA-CCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACC
1 TAAAATTACCAAATTACCCCT-GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACC
*
26076124 GTTTTACCCTTGATTTA
65 GTTTTACCCTTAATTTA
* * ** ** * ** **
26076141 TAGAATTACTATTTTACCTTTGATTTACAGAATTACTATTTTAAGCTCGATTTACAAAATTACTA
1 TAAAATTACCAAATTACCCCTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCG
*** *
26076206 AAATACCCTTAATTTG
66 TTTTACCCTTAATTTA
*
26076222 TAAAATTACCAAAATACCCCTGATTTACA
1 TAAAATTACCAAATTACCCCTGATTTACA
26076251 AAGTTACAGA
Statistics
Matches: 151, Mismatches: 38, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
80 4 0.03
81 145 0.96
82 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (81 bp):
TAAAATTACCAAATTACCCCTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCG
TTTTACCCTTAATTTA
Found at i:26076177 original size:27 final size:27
Alignment explanation
Indices: 26075996--26076204 Score: 235
Period size: 27 Copynumber: 7.8 Consensus size: 27
26075986 ACCAAAGTAC
*
26075996 CCCT-GATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
* *
26076022 CCCTCGATTTACATAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
* *
26076049 CCC-CTAATTTACATAATTA-TCGTTTTA
1 CCCTC-GATTTACAGAATTACT-GTTTTA
*
26076076 CCCTCGACTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
*
26076103 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
* * *
26076130 CCCTTGATTTATAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
* * *
26076157 CCTTTGATTTACAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
** *
26076184 AGCTCGATTTACAAAATTACT
1 CCCTCGATTTACAGAATTACT
26076205 AAAATACCCT
Statistics
Matches: 159, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
26 5 0.03
27 152 0.96
28 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACTGTTTTA
Found at i:26076220 original size:27 final size:27
Alignment explanation
Indices: 26076190--26076326 Score: 100
Period size: 27 Copynumber: 5.0 Consensus size: 27
26076180 TTTAAGCTCG
26076190 ATTTACAAAATTACTAAAATACCCTTA
1 ATTTACAAAATTACTAAAATACCCTTA
** * * *
26076217 ATTTGTAAAATTACCAAAATACCCCTG
1 ATTTACAAAATTACTAAAATACCCTTA
*
26076244 ATTTACAAAGTTAC-AGAAATACCCTTGA
1 ATTTACAAAATTACTA-AAATACCCTT-A
* ** *
26076272 CTTT-CTAAAAATTA-TAGAAATACTATTG
1 ATTTAC--AAAATTACTA-AAATACCCTTA
* *
26076300 GTTTACAAAATTACTGAAATACCCTTA
1 ATTTACAAAATTACTAAAATACCCTTA
26076327 GTTTGTAGAT
Statistics
Matches: 83, Mismatches: 20, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
26 1 0.01
27 58 0.70
28 7 0.08
29 17 0.20
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.33
Consensus pattern (27 bp):
ATTTACAAAATTACTAAAATACCCTTA
Found at i:26076448 original size:27 final size:27
Alignment explanation
Indices: 26076371--26076448 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
26076361 AAATGACTAA
* *
26076371 AATACCCCT-AATAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
26076398 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
26076425 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
26076449 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 39 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Done.