Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 82 of 325
Found at i:26077637 original size:25 final size:25
Alignment explanation
Indices: 26077608--26077655 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
26077598 TTATAATATG
* *
26077608 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
26077633 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
26077656 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:26077717 original size:20 final size:20
Alignment explanation
Indices: 26077692--26077762 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
26077682 ATTTTGATAA
26077692 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
26077712 ACATGACATGAATGATATGC
1 ACATGATATGTATGATATGC
26077732 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
26077752 ACATGAGATGT
1 ACATGATATGT
26077763 TCATAAATGC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:26077739 original size:11 final size:11
Alignment explanation
Indices: 26077703--26077757 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
26077693 CATGATATGT
26077703 ATGATATGCAC
1 ATGATATGCAC
*
26077714 ATGACATG-A-
1 ATGATATGCAC
26077723 ATGATATGCAC
1 ATGATATGCAC
*
26077734 ATGATATG--T
1 ATGATATGCAC
26077743 ATGATATGCAC
1 ATGATATGCAC
26077754 ATGA
1 ATGA
26077758 GATGTTCATA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 15 0.42
10 2 0.06
11 19 0.53
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:26077888 original size:25 final size:24
Alignment explanation
Indices: 26077809--26078001 Score: 243
Period size: 25 Copynumber: 8.0 Consensus size: 24
26077799 AGGAAGTGCA
26077809 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
26077832 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
26077855 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
26077880 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
* *
26077905 GAAGGGCTTATG-CCCAGTTGTGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
* *
26077929 AAAAGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
*
26077953 AAAGGGCTTTTGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
26077977 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
26078002 GATAAAGCAG
Statistics
Matches: 153, Mismatches: 10, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
23 45 0.29
24 51 0.33
25 57 0.37
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:26078000 original size:49 final size:49
Alignment explanation
Indices: 26077808--26077973 Score: 241
Period size: 49 Copynumber: 3.4 Consensus size: 49
26077798 GAGGAAGTGC
26077808 AAAAGGGCTTATGCCCCAGTTAT--TAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTATA
*
26077854 TAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTATGA
1 AAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT-A
** * *
26077904 TGAAGGGCTTATG-CCCAGTTGTGATAAAAGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTATA
*
26077952 AAAAGGGCTTTTGCCCCAGTTA
1 AAAAGGGCTTATGCCCCAGTTA
26077974 CTAAAAGAGG
Statistics
Matches: 107, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
46 22 0.21
48 34 0.32
49 39 0.36
50 12 0.11
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTATA
Found at i:26078256 original size:31 final size:31
Alignment explanation
Indices: 26078193--26078256 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
26078183 CGTTTACAGT
*
26078193 AAAGGCTTCGGCCCAGTAATATAAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATAAAATATGA
** *
26078224 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATAAAATATGA
26078255 AA
1 AA
26078257 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATAAAATATGA
Found at i:26085474 original size:35 final size:34
Alignment explanation
Indices: 26085435--26085503 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
26085425 CCTATCTCCA
*
26085435 TACAGTATTAAATATACAGTAGGGCCTTAGCCCAT
1 TACAGTATT-AATACACAGTAGGGCCTTAGCCCAT
* * *
26085470 TACAGTATTAGTACGCATTAGGGCCTTAGCCCAT
1 TACAGTATTAATACACAGTAGGGCCTTAGCCCAT
26085504 CACAATATCA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
34 21 0.70
35 9 0.30
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (34 bp):
TACAGTATTAATACACAGTAGGGCCTTAGCCCAT
Found at i:26086614 original size:34 final size:34
Alignment explanation
Indices: 26086566--26086643 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
26086556 TGACTGGTAC
* * *
26086566 TGATACTGTGATGGGCTATGGCCCTAATGCGTA-T
1 TGATACTGTAATGGGCTA-AGCCCTAATGCATATT
* *
26086600 TGATATTGTAATGGGCTAAGCCCTATTGCATATT
1 TGATACTGTAATGGGCTAAGCCCTAATGCATATT
26086634 TGATACTGTA
1 TGATACTGTA
26086644 TGAAGATGGG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
33 11 0.30
34 26 0.70
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.36
Consensus pattern (34 bp):
TGATACTGTAATGGGCTAAGCCCTAATGCATATT
Found at i:26090531 original size:6 final size:6
Alignment explanation
Indices: 26090488--26090684 Score: 136
Period size: 6 Copynumber: 32.0 Consensus size: 6
26090478 AAGAAACATT
* * * * *
26090488 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAAA ACCAGA ATCAGA ATCAGGTG
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* *
26090538 AT-AGA ATCAAA ATCAGA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* *
26090586 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA ACCAGA ATCAGA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
26090635 ATTAG- GTCACAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
26090685 GTGTGAATGC
Statistics
Matches: 148, Mismatches: 26, Indels: 34
0.71 0.12 0.16
Matches are distributed among these distances:
5 10 0.07
6 118 0.80
7 13 0.09
8 7 0.05
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:26090561 original size:37 final size:37
Alignment explanation
Indices: 26090509--26090664 Score: 171
Period size: 37 Copynumber: 4.4 Consensus size: 37
26090499 AATCAAAATG
* * *
26090509 AGAATCAAAACCAGAATCAGAATCAGGTGATAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
* *
26090546 AAAATCAGAATCAGAATCAGAATTAGGT-----AA-C
1 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
* *
26090577 AGAATCAGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
* * *
26090614 AGAATCAGAACCAGAATCAGAATTAGGTCACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
*
26090651 AGAATCAGTATCAG
1 AGAATCAGAATCAG
26090665 GTAACAGAAT
Statistics
Matches: 100, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
31 26 0.26
32 2 0.02
36 2 0.02
37 70 0.70
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
Found at i:26090579 original size:25 final size:25
Alignment explanation
Indices: 26090551--26090684 Score: 133
Period size: 25 Copynumber: 5.6 Consensus size: 25
26090541 GAATCAAAAT
*
26090551 CAGAATCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
26090576 CAGAATCAGAATCAGAATCA-GTAT
1 CAGAATCAGAATCAGAATCAGGTAA
26090600 CAGGTAA-CAGAATCAGAATCA-G-AA
1 CA-G-AATCAGAATCAGAATCAGGTAA
* *
26090624 C-----CAGAATCAGAATTAGGTCA
1 CAGAATCAGAATCAGAATCAGGTAA
*
26090644 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
26090669 CAGAATCAAAATCAGA
1 CAGAATCAGAATCAGA
26090685 GTGTGAATGC
Statistics
Matches: 90, Mismatches: 10, Indels: 18
0.76 0.08 0.15
Matches are distributed among these distances:
18 13 0.14
19 1 0.01
20 2 0.02
24 7 0.08
25 65 0.72
26 2 0.02
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:26090583 original size:31 final size:31
Alignment explanation
Indices: 26090548--26090684 Score: 163
Period size: 31 Copynumber: 4.4 Consensus size: 31
26090538 ATAGAATCAA
*
26090548 AATCAGAATCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAG
*
26090579 AATCAGAATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAG
* *
26090610 AATCAGAATCAGAACCAGAATCA-G-AATTAG
1 AATCAGAATCAGAATCAGAATCAGGTAA-CAG
* *
26090640 -GTCACAGAATCAGAATCAGTATCAGGTAACAG
1 AAT--CAGAATCAGAATCAGAATCAGGTAACAG
*
26090672 AATCAAAATCAGA
1 AATCAGAATCAGA
26090685 GTGTGAATGC
Statistics
Matches: 89, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
29 3 0.03
30 3 0.03
31 77 0.87
32 3 0.03
33 3 0.03
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.18
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAG
Found at i:26090909 original size:71 final size:67
Alignment explanation
Indices: 26090832--26090973 Score: 167
Period size: 67 Copynumber: 2.1 Consensus size: 67
26090822 TCACCAGATA
* * *
26090832 CAGATATTATGGCTAGGCCACCAGAACAGATATATATATGTGGCAAAGCCACCACATTGCAGCGA
1 CAGATATTATGACGAAGCCACCAGAAC--A-A-ATATATGTGGCAAAGCCACCACATTGCAGCGA
26090897 CGCTGC
62 CGCTGC
* * * * * *
26090903 CAGATATTGTGACGAAGTCACCATAACAAATATATGTGGCAAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTATGACGAAGCCACCAGAACAAATATATGTGGCAAAGCCACCACATTGCAGCGACGCT
26090968 GC
66 GC
26090970 CAGA
1 CAGA
26090974 ACGCTTCCTC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
67 39 0.63
68 1 0.02
69 1 0.02
71 21 0.34
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.19
Consensus pattern (67 bp):
CAGATATTATGACGAAGCCACCAGAACAAATATATGTGGCAAAGCCACCACATTGCAGCGACGCT
GC
Found at i:26091257 original size:27 final size:27
Alignment explanation
Indices: 26091227--26091421 Score: 230
Period size: 27 Copynumber: 7.2 Consensus size: 27
26091217 GGGCATCTCG
* *
26091227 GTAATTCTACCTTACAGGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
26091254 GTAATTTTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
26091281 GTATTTCTACCCTATAAGGATATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
26091307 GATAATTTTACCCTACAGGGGTATTTTA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
26091335 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
26091362 GTATTTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
26091389 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
26091416 GTAATT
1 GTAATT
26091422 TTGTAAATCG
Statistics
Matches: 142, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 140 0.99
28 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:26091263 original size:54 final size:54
Alignment explanation
Indices: 26091200--26091423 Score: 260
Period size: 54 Copynumber: 4.1 Consensus size: 54
26091190 GGGTAATGTG
* * * * *
26091200 GTAATTTTACCCCATAAGGGCATCTCGGTAATTCTACCTTACAGGAGTATTTCA
1 GTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGAGTATTTCA
*
26091254 GTAATTTTACCCTACAGGGGTATTTCGGTATTTCTACCCTATA-AGGA-TATTTC-
1 GTAATTTTACCCTACAGGGGTATTTCGGTAATTCTA-CCT-TACAGGAGTATTTCA
** * *
26091307 GATAATTTTACCCTACAGGGGTATTTTAGTAATTCTACCTTACAGGGGTATTTCG
1 G-TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGAGTATTTCA
* *
26091362 GT-ATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGG-GTATTTCA
1 GTAATTT-TACCCTACAGGGGTATTTCGGTAATTCTACCTTAC-AGGAGTATTTCA
26091416 GTAATTTT
1 GTAATTTT
26091424 GTAAATCGAG
Statistics
Matches: 146, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
52 2 0.01
53 11 0.08
54 116 0.79
55 15 0.10
56 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (54 bp):
GTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGAGTATTTCA
Found at i:26091325 original size:81 final size:80
Alignment explanation
Indices: 26091228--26091423 Score: 268
Period size: 81 Copynumber: 2.4 Consensus size: 80
26091218 GGCATCTCGG
* *
26091228 TAATTCTACCTTACAGGAGTATTTCAGTAATTTTACCCTACAGGGGTATTTCGGTATTTCTACCC
1 TAATTTTACCCTACAGG-GTATTTCAGTAATTTTACCCTACAGGGGTATTTCGGTATTTCTACCC
*
26091293 TATAAGGATATTTCGA
65 TACAAGGATATTTCGA
* * *
26091309 TAATTTTACCCTACAGGGGTATTTTAGTAATTCTACCTTACAGGGGTATTTCGGTATTTCTACCC
1 TAATTTTACCCTACA-GGGTATTTCAGTAATTTTACCCTACAGGGGTATTTCGGTATTTCTACCC
* * *
26091374 TACAGGGGTATTTCGG
65 TACAAGGATATTTCGA
26091390 T-ATTTCTACCCTACAAGGGTATTTCAGTAATTTT
1 TAATTT-TACCCTAC-AGGGTATTTCAGTAATTTT
26091424 GTAAATCGAG
Statistics
Matches: 101, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
80 4 0.04
81 94 0.93
82 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.39
Consensus pattern (80 bp):
TAATTTTACCCTACAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTCGGTATTTCTACCCT
ACAAGGATATTTCGA
Found at i:26091490 original size:81 final size:81
Alignment explanation
Indices: 26091405--26091590 Score: 189
Period size: 81 Copynumber: 2.3 Consensus size: 81
26091395 CTACCCTACA
* ** * *
26091405 AGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACGATAA-TTCTATAAATC-GAGGGTACTT
1 AGGGTATTTCAATAATTTTACAAATCGAGGGTAAAACAATAATTTC-ACAAATCAGA-GGTACTT
26091468 TGGTAATTTTACAAGTCG
64 TGGTAATTTTACAAGTCG
* * *** *
26091486 AGGGTATTTTAATAATTTTACAAGTCGAGGGTATTTCAATAATTTCACAAATCAGAGGTATTTTG
1 AGGGTATTTCAATAATTTTACAAATCGAGGGTAAAACAATAATTTCACAAATCAGAGGTACTTTG
* *
26091551 GTAATTTTACAA-ACT
66 GTAATTTTACAAGTCG
**
26091566 ATGGGTATTTTGATAATTTTACAAA
1 A-GGGTATTTCAATAATTTTACAAA
26091591 CCAGGGGTAT
Statistics
Matches: 87, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
80 2 0.02
81 80 0.92
82 5 0.06
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (81 bp):
AGGGTATTTCAATAATTTTACAAATCGAGGGTAAAACAATAATTTCACAAATCAGAGGTACTTTG
GTAATTTTACAAGTCG
Found at i:26091916 original size:27 final size:27
Alignment explanation
Indices: 26091459--26091909 Score: 537
Period size: 27 Copynumber: 16.7 Consensus size: 27
26091449 CTATAAATCG
* ** *
26091459 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAAACCA
** ** *
26091486 AGGGTATTTTAATAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAAACCA
*** * *
26091513 AGGGTATTTCAATAATTTCACAAATC-
1 AGGGTATTTTGGTAATTTTACAAACCA
*
26091539 AGAGGTATTTTGGTAATTTTACAAACTA
1 AG-GGTATTTTGGTAATTTTACAAACCA
* *
26091567 TGGGTATTTTGATAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
26091594 GGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
26091621 GGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
26091648 AGGGTATTTTAGTAATTTTACTAACC-
1 AGGGTATTTTGGTAATTTTACAAACCA
**
26091674 AGAGGTATTTTGGTAATTTTGTAAACCA
1 AG-GGTATTTTGGTAATTTTACAAACCA
26091702 AGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
26091729 GGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
26091756 AGGTTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* **
26091783 GGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
26091810 AGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
26091837 AGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
26091864 AGGGTATTTTTAGTAATTTTACAAACCA
1 AGGGTA-TTTTGGTAATTTTACAAACCA
*
26091892 GGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
26091910 AGTAAACTAA
Statistics
Matches: 368, Mismatches: 51, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
26 4 0.01
27 338 0.92
28 26 0.07
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACCA
Found at i:26091925 original size:108 final size:108
Alignment explanation
Indices: 26091542--26091916 Score: 599
Period size: 108 Copynumber: 3.5 Consensus size: 108
26091532 ACAAATCAGA
* * * * * *
26091542 GGTATTTTGGTAATTTTACAAACTATGGGTATTTTGATAATTTTA-CAAACCAGGGGTATTTTGG
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAA-TTTAGTAAACCAAGGGTATTTTGG
*
26091606 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAG
65 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
* * *
26091650 GGTATTTTAGTAATTTTACTAACCAGAGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGT
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTAGTAAACCAAGGGTATTTTGGT
26091715 AATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
66 AATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
* *
26091758 GTTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGT
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTAGTAAACCAAGGGTATTTTGGT
* *
26091823 AATTTTACAAACCAAGGGTATTTTGGTGATTTTATAAACCAAG
66 AATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
26091866 GGTATTTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTAGTAAAC
1 GGTA-TTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTAGTAAAC
26091917 TAAAGTATTC
Statistics
Matches: 248, Mismatches: 17, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
107 3 0.01
108 200 0.81
109 45 0.18
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (108 bp):
GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTAGTAAACCAAGGGTATTTTGGT
AATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
Found at i:26099257 original size:68 final size:68
Alignment explanation
Indices: 26099151--26099327 Score: 187
Period size: 68 Copynumber: 2.6 Consensus size: 68
26099141 ATCAATAAGA
* * * * * * * **
26099151 TAGCATTTAATATGCTTATAACAATTCGACACTGTAGCAAATAATATGCTCATAGTAGATCAATG
1 TAGCAATTAATATGCTTATAACAAATCAATACAGTAGCAAATAACATGATCATAACAGATCAATG
26099216 CGG
66 CGG
* * * *
26099219 TGGTAATTAATATGCTTATAACAGAA-CAATAC-GTTAGCAAATAACATGATTATAACATATCAA
1 TAGCAATTAATATGCTTATAACA-AATCAATACAG-TAGCAAATAACATGATCATAACAGATCAA
*
26099282 TGCTG
64 TGCGG
*
26099287 TAGCAATTAATATGTTTATAACAAATCAATACAGTAGCAAA
1 TAGCAATTAATATGCTTATAACAAATCAATACAGTAGCAAA
26099328 AGACATGCTT
Statistics
Matches: 89, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
67 3 0.03
68 84 0.94
69 2 0.02
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.31
Consensus pattern (68 bp):
TAGCAATTAATATGCTTATAACAAATCAATACAGTAGCAAATAACATGATCATAACAGATCAATG
CGG
Found at i:26099291 original size:34 final size:34
Alignment explanation
Indices: 26099234--26099327 Score: 102
Period size: 34 Copynumber: 2.8 Consensus size: 34
26099224 ATTAATATGC
26099234 TTATAACAGAA-CAATAC-GTTAGCAAATAACATGA
1 TTATAACA-AATCAATACAG-TAGCAAATAACATGA
* * * * * *
26099268 TTATAACATATCAATGCTGTAGCAATTAATATGT
1 TTATAACAAATCAATACAGTAGCAAATAACATGA
26099302 TTATAACAAATCAATACAGTAGCAAA
1 TTATAACAAATCAATACAGTAGCAAA
26099328 AGACATGCTT
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
33 1 0.02
34 47 0.96
35 1 0.02
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.29
Consensus pattern (34 bp):
TTATAACAAATCAATACAGTAGCAAATAACATGA
Found at i:26101951 original size:49 final size:45
Alignment explanation
Indices: 26101892--26102019 Score: 132
Period size: 49 Copynumber: 2.7 Consensus size: 45
26101882 AGTTGATGCA
26101892 ATGTCCCAGACATTGTCTTACACTGACTATCGAAATCGAGGCCGACACC
1 ATGTCCCAGACATTGTCTTACACTGAC-A-C-AAATCGAGGCCGA-ACC
* * ** **
26101941 ATGTCCCAGACATGGTTTTACACTGACACATCTCGAGGCCGATGC
1 ATGTCCCAGACATTGTCTTACACTGACACAAATCGAGGCCGAACC
*
26101986 ATGTCCTAGACA-TGTCTTACACTGGCACACAAAT
1 ATGTCCCAGACATTGTCTTACACT-G-ACACAAAT
26102020 AACCTGAATG
Statistics
Matches: 66, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
44 9 0.14
45 13 0.20
46 17 0.26
47 1 0.02
48 1 0.02
49 25 0.38
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (45 bp):
ATGTCCCAGACATTGTCTTACACTGACACAAATCGAGGCCGAACC
Found at i:26105925 original size:22 final size:22
Alignment explanation
Indices: 26105897--26106018 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
26105887 TTCCACATCC
26105897 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
26105919 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
26105943 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
26105966 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
26105990 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
26106013 ATCACA
1 ATCACA
26106019 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:26105932 original size:47 final size:47
Alignment explanation
Indices: 26105869--26106512 Score: 947
Period size: 47 Copynumber: 13.6 Consensus size: 47
26105859 CCCTTCGGGA
* * *
26105869 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
26105916 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
26105963 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
26106010 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
26106057 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
26106104 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
26106151 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
26106198 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
26106247 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
26106294 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
26106343 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
26106390 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
26106437 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
26106486 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
26106513 TATTCAAATA
Statistics
Matches: 565, Mismatches: 24, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 427 0.76
49 136 0.24
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:26107906 original size:85 final size:85
Alignment explanation
Indices: 26107777--26107955 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
26107767 TATTTTATTG
*
26107777 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
26107842 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
26107862 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
26107927 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
26107947 CCCATGCTC
1 CCCATGCTC
26107956 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:26110498 original size:27 final size:27
Alignment explanation
Indices: 26110451--26110608 Score: 135
Period size: 27 Copynumber: 5.9 Consensus size: 27
26110441 CGAGGCTACC
* * *
26110451 AGATATTGTGACGAAGTCACCAGATAT
1 AGATATTGTGGCAAAGCCACCAGATAT
*
26110478 AGATATTGTGGCAAAGCCACCAGA-AC
1 AGATATTGTGGCAAAGCCACCAGATAT
* * *
26110504 AGATATATGTGGCAGAGCTACCAGAT-C
1 AGATAT-TGTGGCAAAGCCACCAGATAT
* *
26110531 AGATAATCGTGGCATAGCCACCAGA-AT
1 AGAT-ATTGTGGCAAAGCCACCAGATAT
* *
26110558 AGATATATGTGGTAGAGCCACCAGATCAT
1 AGATAT-TGTGGCAAAGCCACCAGAT-AT
* *
26110587 ATA-ATTGTGGCATAGCCACCAG
1 AGATATTGTGGCAAAGCCACCAG
26110609 GACGCTTCCT
Statistics
Matches: 108, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
26 9 0.08
27 91 0.84
28 4 0.04
29 4 0.04
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (27 bp):
AGATATTGTGGCAAAGCCACCAGATAT
Found at i:26110543 original size:54 final size:54
Alignment explanation
Indices: 26110468--26110608 Score: 194
Period size: 54 Copynumber: 2.6 Consensus size: 54
26110458 GTGACGAAGT
* * *
26110468 CACCAGATATAGAT-ATTGTGGCAAAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* * *
26110522 TACCAGATCAGATAATCGTGGCATAGCCACCAGAATAGATATATGTGGTAGAGC
1 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
26110576 CACCAGATCATATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATCGTGGCATAGCCACCAG
26110609 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 4 0.05
54 73 0.95
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (54 bp):
CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:26110776 original size:28 final size:26
Alignment explanation
Indices: 26110714--26110776 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
26110704 AAAGTAACCC
** * *
26110714 TAGGGGTATAATGGTAATTTTGCACC
1 TAGGGGTATAACAGTAATTTTCCACA
26110740 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC--ACA
26110768 TAGGGGTAT
1 TAGGGGTAT
26110777 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.65
28 11 0.35
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCACA
Found at i:26112877 original size:46 final size:46
Alignment explanation
Indices: 26112824--26112996 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
26112814 TGGTTGAGCA
26112824 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
26112870 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
26112915 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
26112963 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26112997 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26112980 original size:93 final size:93
Alignment explanation
Indices: 26112821--26112991 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
26112811 GGATGGTTGA
* * *
26112821 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26112886 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
26112914 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26112979 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
26112992 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:26115094 original size:27 final size:26
Alignment explanation
Indices: 26115048--26115185 Score: 168
Period size: 27 Copynumber: 5.1 Consensus size: 26
26115038 ATGACGAAGT
* *
26115048 CACCAGATACAGGTACTGTGGCAGAGC
1 CACCAGA-ACAGATAATGTGGCAGAGC
26115075 CACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAACAGATA-ATGTGGCAGAGC
* * *
26115102 TACCAGATCAGATAATCGTGGCATAGC
1 CACCAGAACAGATAAT-GTGGCAGAGC
26115129 CACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAACAGATA-ATGTGGCAGAGC
* *
26115156 CACCAGATCAGATAATTGTGGCATAGC
1 CACCAGAACAGATAA-TGTGGCAGAGC
26115183 CAC
1 CAC
26115186 TAGGACGCTT
Statistics
Matches: 97, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
26 9 0.09
27 86 0.89
28 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.17
Consensus pattern (26 bp):
CACCAGAACAGATAATGTGGCAGAGC
Found at i:26115123 original size:54 final size:54
Alignment explanation
Indices: 26115048--26115185 Score: 215
Period size: 54 Copynumber: 2.6 Consensus size: 54
26115038 ATGACGAAGT
* * *
26115048 CACCAGATACAGGTACT-GTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
26115102 TACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
26115156 CACCAGATCAGATAATTGTGGCATAGCCAC
1 CACCAGATCAGATAATCGTGGCATAGCCAC
26115186 TAGGACGCTT
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 6 0.08
54 71 0.92
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:26115356 original size:28 final size:26
Alignment explanation
Indices: 26115294--26115356 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
26115284 AAAGTAACCC
** * *
26115294 TAGGGGTATAATGGTAATTTTGTACC
1 TAGGGGTATAACAGTAATTTTATACA
26115320 TAGGGGTATAACAGTAATTTTTCATACA
1 TAGGGGTATAACAGTAA-TTTT-ATACA
26115348 TAGGGGTAT
1 TAGGGGTAT
26115357 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 15 0.48
27 4 0.13
28 12 0.39
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.37
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTATACA
Found at i:26116826 original size:26 final size:26
Alignment explanation
Indices: 26116796--26116877 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
26116786 TGAAATGCCC
26116796 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
26116822 ATCATAGAACATTTACCTAACCAATT
1 ATCATGGAACATTTACCTAACCCATT
*
26116848 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
26116874 ATCA
1 ATCA
26116878 ATTTTTATCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:26128186 original size:19 final size:20
Alignment explanation
Indices: 26128151--26128192 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
26128141 ACCTTTTTTT
*
26128151 ATTTTTAAATATTTTTATTA
1 ATTTTTAAATATTTTTATGA
*
26128171 ATTTTTTAA-ATTTTTATGA
1 ATTTTTAAATATTTTTATGA
26128190 ATT
1 ATT
26128193 ATATGTGGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
ATTTTTAAATATTTTTATGA
Found at i:26134287 original size:26 final size:26
Alignment explanation
Indices: 26134232--26134308 Score: 66
Period size: 26 Copynumber: 2.9 Consensus size: 26
26134222 ACATATTTTC
**
26134232 TCAAAATTTTACTAAAGGCAAAATGG
1 TCAAAATTTTACTAAAGGCAAAATCA
* *
26134258 TCAAAATTTTAC-CAGGGCTAAAATCA
1 TCAAAATTTTACTAAAGGC-AAAATCA
* * *
26134284 TCAAAAGTTTTGCTAGAGGTAAAAT
1 TCAAAA-TTTTACTAAAGGCAAAAT
26134309 AGGGATGAGA
Statistics
Matches: 39, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
25 4 0.10
26 23 0.59
27 10 0.26
28 2 0.05
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.29
Consensus pattern (26 bp):
TCAAAATTTTACTAAAGGCAAAATCA
Found at i:26136810 original size:29 final size:29
Alignment explanation
Indices: 26136747--26136814 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
26136737 TAATCAACCA
26136747 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
26136776 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
26136805 CGCACACTTA
1 CGCACACTTA
26136815 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:26136955 original size:29 final size:30
Alignment explanation
Indices: 26136916--26136994 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
26136906 CTTAATAATC
26136916 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
26136946 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
26136975 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26136995 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:26144918 original size:29 final size:29
Alignment explanation
Indices: 26144855--26144922 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
26144845 TAATCAACCA
26144855 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
26144884 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
26144913 CGCACACTTA
1 CGCACACTTA
26144923 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:26145063 original size:29 final size:30
Alignment explanation
Indices: 26145024--26145102 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
26145014 CTTAATAATC
26145024 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
26145054 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
26145083 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26145103 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:26153609 original size:48 final size:48
Alignment explanation
Indices: 26153526--26153663 Score: 197
Period size: 48 Copynumber: 2.9 Consensus size: 48
26153516 ACATTTGGGT
* * *
26153526 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
1 GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
*
26153574 -ATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
1 GA-TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
* * *
26153622 GACATGAGAGCCAGTATAAGACCATGTTTGGAACATGGCATC
1 GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
26153664 AGCAATTCAC
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
47 1 0.01
48 79 0.98
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
Found at i:26163524 original size:29 final size:29
Alignment explanation
Indices: 26163487--26163589 Score: 145
Period size: 29 Copynumber: 3.6 Consensus size: 29
26163477 GTTGAGAGAT
*
26163487 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
*
26163516 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* * *
26163545 TGGCGCTAAGTGTGCGAG-TTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
26163574 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26163590 CGGTTGACTA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
28 5 0.07
29 63 0.93
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:26174689 original size:26 final size:26
Alignment explanation
Indices: 26174660--26174711 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
26174650 ACCAATGAAA
*
26174660 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
26174686 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
26174712 CTTTCACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:26174704 original size:103 final size:104
Alignment explanation
Indices: 26174525--26174789 Score: 410
Period size: 103 Copynumber: 2.6 Consensus size: 104
26174515 AACCGTTATT
* * *
26174525 GGTGGATCTCGCACTTAGCACCACCACTGAATTGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
*
26174590 ATCAGCACATAGCAACCCCCTTT-TCATTTCAAAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
26174628 GGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTC-GGGG
1 GGTGGATATCGCACTTAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
26174692 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAT
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* * **
26174732 GGTGGATCA-CGCACATAGCACCACCAATGAACCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
26174790 TTTATATACA
Statistics
Matches: 150, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
103 81 0.54
104 68 0.45
105 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.18
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:26175152 original size:29 final size:29
Alignment explanation
Indices: 26175119--26175182 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
26175109 TAATCCACCA
26175119 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
26175148 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
26175178 CCCAA
1 CCCAA
26175183 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:26175156 original size:30 final size:30
Alignment explanation
Indices: 26175126--26175182 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
26175116 CCACCCAACT
26175126 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
26175155 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
26175183 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:26177281 original size:17 final size:18
Alignment explanation
Indices: 26177249--26177285 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
26177239 CCATGTTGTT
*
26177249 TGCCCTTGTGGGCCCACA
1 TGCCCGTGTGGGCCCACA
26177267 TGCCCGTGT-GGCCCACA
1 TGCCCGTGTGGGCCCACA
26177284 TG
1 TG
26177286 GCCCAATTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.11, C:0.38, G:0.30, T:0.22
Consensus pattern (18 bp):
TGCCCGTGTGGGCCCACA
Found at i:26179900 original size:15 final size:15
Alignment explanation
Indices: 26179880--26179909 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
26179870 CTAACTCAAA
26179880 ATATGGGTAGAAATG
1 ATATGGGTAGAAATG
26179895 ATATGGGTAGAAATG
1 ATATGGGTAGAAATG
26179910 GAGAGAGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.33, T:0.27
Consensus pattern (15 bp):
ATATGGGTAGAAATG
Found at i:26182993 original size:17 final size:17
Alignment explanation
Indices: 26182971--26183003 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26182961 ACTAGAGAGC
26182971 TGTAAGAATACTAAAGT
1 TGTAAGAATACTAAAGT
*
26182988 TGTAAGAATGCTAAAG
1 TGTAAGAATACTAAAG
26183004 CAATTCTAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.21, T:0.27
Consensus pattern (17 bp):
TGTAAGAATACTAAAGT
Found at i:26186695 original size:633 final size:633
Alignment explanation
Indices: 26184245--26212366 Score: 32452
Period size: 633 Copynumber: 44.0 Consensus size: 633
26184235 GCGATAGTGT
26184245 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* * *
26184310 TGATGCATTGCAAGAGTGAAACTTTTGACAAATTCAAAAAGTTTCATGTGGAAGTGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
26184375 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
** *
26184440 AAGGCACCTCATAGAGAATGAGATTCTATCCCAA-TAACAATGTCGGGCTCTCCACAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* *
26184504 GCACAGCAGAAAGAAGAAATCGAACATTGTTAGA-ATGGTAGATTCGATATTAAGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* *
26184568 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGTCTTGTTATATTTTGAATGATGTGCCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
* *
26184633 TAAGGAAGAATCGAAAACTCTGTACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
** *
26184698 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCAAACTTACATAGGCTG
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
* * * * * * *
26184763 GAGTTCTTCTAATCTAGTAGAAGTGTTTTTAACATTGAGTCTGCTAAAAAAGAAGATGATACCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
*
26184828 ACTCACATATGACGAAGCGATGTAGAATGTTGATTCCAAGCTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* *
26184876 AAGAGGTGGTTATGAGAATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
*
26184941 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCATGTGGAAGTGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
*
26185006 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTTGA-GTGGGGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* *
26185070 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACTGTGTCAGGCACTCCACAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* * * * *
26185135 GCATAGCAAAGAGAAGAAATTGAACATTGCTAGACATGGTATATTCGATATGAAGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* ** * *
26185200 TTGTTAACCTCTTTTTCAGGATACGTTGTACAAACGACTTGTTATATTCTGCATAATGTGCCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
26185265 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
* * * *** *
26185330 GGATTTTGAGATGTCTGACCCATGTATTGGATACTTATACAAGAAAGTCGGACTCACATAGGCTG
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
* *
26185395 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCCGAACAGGAAGATGATGTCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
** *
26185460 ACTCGTATATGATGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* * *
26185508 AGGAGGTGGTTATGAGTATTATGTAACCTTTATCAATGATTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
*
26185573 TAATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* * *
26185638 CTACATTTACCCATAAAGGCACTTCGGTCTGGTCAATGTGGGGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* * *
26185703 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGT-T--GGCACTCTAAAATAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* * *
26185765 GCACAGTAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTTGATATTAAGTTATTTGAAT
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
*
26185830 TTGTCAACCTCTTTTTGGGGATACGTTGAACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
* *
26185895 TAAGGCAAAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATATATTTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
26185960 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
* * * * *
26186025 GAGTTCTTCCAATCTAGCAGATGTGTTTTTTACACTGAGTCTACTGAGCAAGAAGATGATGCCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
* * **
26186090 GCTCACATATGACGAAGCGATGTAAAGTGTAAATTCCAAGCTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* * * *
26186138 AAGAGGTGGTTACGAGTATTATTTAACCTTGATTAATGAATATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* *
26186203 TGATGCATCGGAAGAGTGAAACATTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* * * * *
26186268 CTACGTTTACCCATAAAGGAACTTCGGTCTAGTTGAGGTGGGGTATATTTATCTAATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* *
26186333 AAGGCACCTCATAGATAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCTACAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* * *
26186398 GCACAGTAGAGAGAAGAAATTGATCATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* * * *
26186463 TTGTCAACCACTTTTTAGGGATACGTTGTACAAACGAATTGTTATATTCTGAATAATGTGCCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
* * *
26186528 TAAGGTAGAATCGAAAACCCTATACAAATTGTGGCATGGTAGGAAGTTGAATCGTATACATTTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
* * *
26186593 GGATTTTGGGATATCTGACCCACGTATTAGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
* * * *
26186658 GAGTTCTTCCAATCTAACAGAAGTATTTTTAACACTGAGTCTGCTGAATAGGAAGATGATGGCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
* *
26186723 ACTCACATATGACGAAGCGATGTAGAGAGTTGATTCCAAGCTCTAAAA
586 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* * * * * * *
26186771 AAAAGTTGGCTAGGAGTATAATCTACCCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* *
26186836 TGATGCATCACAAGAGTGAAAATTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* * *
26186901 CTACGTTTATCCATAAAGGCACTTCGGTCTGGTCCAGGTGTGGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* *
26186966 AAGGCACCTCGTAGAGAATGAGATTCTATCCCAATTAATCGTGTCGGGCACTCCACAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* *
26187031 GCACAGTAGAGAGAAGAAATCGAAAATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* *
26187096 TTGTCAACCTCTTTTTAGGGATACATTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
* * ** *
26187161 TAACGCAGAATTGAAAACAATATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACGTTTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
* * *
26187226 GGATTTTGGGATGTCCGATCCACGTATTCGATAAAGATACAAGAAAGTCGGACTCACATAGGCTG
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
* *
26187291 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAATAGGAAGATGATCCCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
*
26187356 ACTCACATATGACGAAGTGATGTAGAGTGTTGATTCCAAGCTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* *
26187404 AAGAGGTGGGTACGAGTATTATATAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* ** *
26187469 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCATGTACAAGTGTAGAAAAAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* * *
26187534 CTACGTTTACCCATAAAGACACTTCGGTCTGGTCAAGGTGGGGCATATTTATCTGATGTGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* * *
26187599 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTATCCATGTCGGGCACTCTACAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
*
26187664 GCACAGCAGAGAGAAGGAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* * *
26187729 TTGTCAACCTCTTTTTGGGGATACGTTGAACAAATGACTTGTTATATTTTGAATGATGTGCCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
* * *
26187794 TAAGGCAGAGTCGAAAACTCTATACAAATTGTGGAATGGTAGGAAGTTGAATCTTATATATTTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
*
26187859 GGATTTTGGGATGTTCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
* * * * *
26187924 GAG-TCTTCCAATATAGCAGAACTATTATTAACTCTGAGTCTGCTGAACAGGAAGATGATGCCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
*
26187988 GCTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
*
26188036 AAGAGGTGGTTACGAGTATTATGTAACCTTGATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* * * ** *
26188101 TGATGCATCGCAAGAATGATACTTTTGATACATTCAAAGTGTTTCAT-TCGGAAGTGTAGAAACA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGT-GGAAGTGTAGAAACA
* *
26188165 ACTACGTTTACCCATAAAGGCACTTCGGTCTGGTAGAGGTGGGGCATATTTTTCTGATGAGTTCT
130 ACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCT
*
26188230 TAAGGCATCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAAT
195 TAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAAT
*
26188295 GGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTATGTTATTTGAA
260 GGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAA
* *
26188360 GATGTCAACCTCTTTTTTGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
325 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
* * *
26188425 ATAAGGTAGAATCGAAAACTCTATACAAATTGCGGCATGGTAGGAAGTTGAATCGTATACATTTT
390 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
*
26188490 AGGATTTTGGGATATCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
455 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
* * * *
26188555 GGAGTTCTTCCAATCTAACAGAAGTATTTTTAACACTGAGTCTGCTGAATAGGAAGATGATGGCT
520 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCT
* *
26188620 TACTCACATATGACGAAGCGATGTAGAGAGTTGATTCCAAGCTCTAAAA
585 TACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* * * * * * *
26188669 AAAAGTTGGCTAGGAGTATAATCTACCCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* *
26188734 TGATGCATCACAAGAGTGAAAATTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* * * ** * *
26188799 CTACGTTTTCCCCTTAAGAAACTTCGGTCTAGTCGAGGTGGGGCATATTTATCTGATGGGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* ** *
26188864 AAGGCACCTCATAGAGAATTAGATTCTATCCCAATTAACCGTGTTAGGCACTCCGCAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* * * *
26188929 GCACAGCAGGGAGAAGAAATCGATCATTGTTAGACATGGTATATTCTAAATTAAGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* * *
26188994 TTGTCAAGCTCTTTTTGGGGATACGTTGTACAAACGTCTTGTTATGTTCTGAATGATGTGCCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
* * * * *
26189059 TAAGGAAGAATCAAAAACTCTAAACAAATTGTGGCATGGTAGGAAGTTGCATCTTATATATTTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
* * *
26189124 GGATTTTCGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAATCAGACTCACATAGGCTG
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
*
26189189 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTACTGAACAGGAAGATGATGCCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
* ** * *
26189254 GCTCACATATGACGAAGCGATGTAGAGCATTCATTCGAAGCTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* *
26189302 AGGATGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* * * *
26189367 TGATGCATCGCTAGAGTGATACTTTTGATACATTAAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* * * *
26189432 TTACGTTTACCCATAGAGGCACTTCAGTCTGGTCGGGGTGGGGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* * *
26189497 AAGGTACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTATCGGGCACTCTACAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* * ** * * * * * *
26189562 GTAAAATAGAGATAAGAAATCGAACACTGTTAGACATGGTATATACAATATAAAGTTATTCGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* *
26189627 TTGTCAACCTCTTTTTGGAGATACGTTGTACAAACGACTTGTTATACTCTGAATGATGTGCCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
* *
26189692 TAATGTAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
* * * *
26189757 GGATTTTGGGATGTCCAACCCACGTATTGGATAATGATGCAAGAAAGTCGAACTGACATAGGCTG
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
* * * * * * *
26189822 GAGTTCCTCCAATCTAACAGAAGTGCTTTTAACAATGAGTCTGCTGAATAGGAAGATAATCCCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
26189887 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
26189935 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
**
26190000 TGATTAATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGT-GCAAACA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAG-AAACA
* *
26190064 ACTACGTTTACCCATAAAGGAACTTCTGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCT
130 ACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCT
*
26190129 TAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACCCCACAACAGAAT
195 TAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAAT
** * * *
26190194 GGCATTGCAGGGAGAAGAAATCGATCATTGTTAGACATGGTGTATTCGATATTAAGTTATTTGAA
260 GGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAA
*
26190259 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAACGATGTGCCAA
325 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
* * *
26190324 ATAAGGAAGAATAGAAAACTCTATACAAATTGTGGCACGGTAGGAAGTTGAATCTTATACATTTT
390 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
* * * * * *
26190389 AGGATTTTTGAATGTCCGACCCGCGTACTGGATAAAGATGCAAGAAAGTCAGACTCATATAGGCT
455 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
* * * *
26190454 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTAAACACTGAGTCTGCTGAATAGGAAGATAATCCCT
520 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCT
26190519 TACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
585 TACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
26190568 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
**
26190633 TGATTAATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGT-GCAAACA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAG-AAACA
*
26190697 ACTACGTTTACCCATAAAGGAACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCT
130 ACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCT
*
26190762 TAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACCCCACAACAGAAT
195 TAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAAT
* * * *
26190827 GGCATAGCAGGGAGAAGAAATCGATCATTGTTAGACATGGTGTATTCGATATTAAGTTATTTGAA
260 GGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAA
*
26190892 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAACGATGTGCCAA
325 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
* * *
26190957 ATAAGGAAGAATAGAAAACTCTATACAAATTGTGGCACGGTAGGAAGTTGAATCTTATACATTTT
390 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
* *
26191022 AGGATTTTGGGATGTCCGACCCGCGTACTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
455 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
26191087 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCT
520 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCT
* ** *
26191152 TGCTCACATATGAAAAAGCGATGTAGAGTGTTGATTTCAAGCTCTAGAA
585 TACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
*
26191201 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCGAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
*
26191266 TGATGCATCGCAAGAGTGAAACTTTTGATACATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* * *
26191331 TTACGTTTACCCATAAAGGAACTTCGGTCTGGTCAAGGTGGGGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
*
26191396 AAGGCACCTCATAGAGAATAAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
*
26191461 GCACAGCAGAGAGAAGAAATCGAACATTGATAGACATGGTATATTCGATATTAAGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* *
26191526 TTGTCAACCTCTTTTTTTGGGATATGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
326 TTGTCAACCTC-TTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
* *
26191591 ATAAGGTAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGGATCTTATACATTTT
390 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
*
26191656 AGGATTTTTGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
455 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
* * *
26191721 GGAGTTCCTCCAATCTAGCAGAAGTGTTTTTAACTCTGAGTTTGCTGAACAGGAAGATGATGCCT
520 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCT
* *
26191786 TGCTCACATATGACGAAGCGATGTAGAGTGTTGTTTCCAAGCTCTAGAA
585 TACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
26191835 AAGAGGTGGTTACGAG-ATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* *
26191899 TGATGCATCGCAAGAGTGATACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGT-GCAAACT
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAG-AAACA
* * * *
26191963 ACTACGTTTACCCATAATGGAACTTCGGTCTGGTCAAGGAGGGGCATATTTATCTGATGAGTTCT
130 ACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCT
* *
26192028 TAGGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTTCACAACAGAAT
195 TAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAAT
* * * *
26192093 GGCATAGCAGGGAGAAGAAATCGATCATTGTTAGACATGGTGTATTCGATATTAAGTTATTTGAA
260 GGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAA
*
26192158 GTTGTCAACCTCTTTTTGGCGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
325 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
*
26192223 ATAAGGTAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
390 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
** * *
26192288 AGGATTTTGGGGCGTCTGACCCACATATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
455 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
* * * *
26192353 GTAGTTCTTCCAATCTAACAGAAGTGTTTTTAACACTGAGTCTGCTGAATAGGAAGATGATGTCT
520 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCT
26192418 TACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
585 TACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
26192467 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* *
26192532 AGATGCATCGCAAGAGTGAAACTTTTGATACATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* * *
26192597 CTACGTTTTCCCATTAAGGAACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* * * *
26192662 AAGGCACCTCATAGAGAATTAGATTCTATCCCAATTATCCATGTCGGGCACTCTACAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* *
26192727 GCACAGCAGAGAGAAGGAATCGAACATTTTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* * *
26192792 TTGTCAACCTCTTTTTGGGGATACGTTGAATAAATGACTTGTTATATTCTGAATGATGTGCCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
* * *
26192857 TAAGGCAGAATCAAAAACTCTATACAAATTGTGGAATGGTAGGAAGTTGAATCTTATATATTTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
* *
26192922 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGTTGCAAGAAAGTCAGACTCACATAGGCTG
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
* * * * *
26192987 GAGTTCTTCCAATATAGCAGAACTATTATTAACTCTGAGTCTGCTGAACAGGAAGATGATGCCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
*
26193052 GCTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* *
26193100 AAGAGGTGGTTATGAGTATTATGTAACCTTGATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* * ** *
26193165 TGATGCATCGCAAGAGTGATACTTTTGATACATTCAAAGTGTATCGT-TCGGAAGTGTAGAAACA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGT-GGAAGTGTAGAAACA
* *
26193229 ACTACGTTTACCCATAAAGGCACTTCGGTCTGGTAGAGGTGGGGCATATTTTTCTGATGAGTTCT
130 ACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCT
*
26193294 TAAGGCACCTCATAGAGAATGAGATTTTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAAT
195 TAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAAT
* *
26193359 GGCATAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTATGTTATTTGAA
260 GGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAA
* *
26193424 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAACGATGTGCAAA
325 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
* * *
26193489 ATAAGGAAGAATAGAAAACTCTATACAAATTGTGGCACGGTAGGAAGTTGAATCTTATACATTTT
390 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
* * * * *
26193554 AGGATTTTTGAATGTCCGACCCGCGTACTGGATAAAGATGCAAGAAAGTCAGACTCACATAGGCT
455 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
* * * * * *
26193619 GGAGTGCTTCCAATCTAACAAAAGTGTTTTTAACACTGAGTCTGCTGAATAGGAAGATAATCCCT
520 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCT
26193684 TACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
585 TACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
26193733 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
**
26193798 TGATTAATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGT-GCAAACA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAG-AAACA
* *
26193862 ACTACGTTTACCCATAAAGGAACTTCGGTCTGGTCGAGGTGGGGCATATTTACCTGATGCA-TTC
130 ACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATG-AGTTC
* * ** *
26193926 TTAAGGTACCTCATAGGGAAAAAGATTCTATCCCAATTAACCGTGTCGAGCACTCCACAACAGAA
194 TTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAA
*
26193991 TGGCACAGCAGAGAGAAGAAATTGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGA
259 TGGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGA
* * * *
26194056 AGTTTTCAACCTCTTTTTGGTGATGCATTGTACAAACGACTTGTTATATTCTGAATGATGTGCCA
324 AGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCA
* * **
26194121 AATAAGGTAGAATAGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATAGTATACATTT
389 AATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTT
*
26194186 TAGGATTCTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGC
454 TAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGC
* * * *
26194251 TGGAGTTCTTCCAATCTAACAGAAGTGTTTTTAACACTGAGTCTGTTGAATAGGAAGATGATCCC
519 TGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCC
* *
26194316 TTACTAACATATGACGAAGCAATGTAGAGTGTTGATTCCAAGCTCTAGAA
584 TTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* **
26194366 AAGAGGTGCTTATAAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* ** * *
26194431 TTATTAATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCCTGTGGAAGTGTACAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* * * *
26194496 CTACGTTTACCCATAAAGGAACTTCGTTCTGGTCGAGGTGGGGCATATCTATATGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
*
26194561 AAGGCACCTCATAGAGAATGAGATTCTATCCCAAATAACCGTGTCGGGCACTCCACAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* * * *
26194626 GCACAGCAAAGAGAAGAAATCGATCATTGTTAGACATGGTCTATTCGATATTAAGTTATTTAAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* *
26194691 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAATGACTTGTTATATTCTGAACGATGCT-CCAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATG-TGCCAA
* *
26194755 ATAAGGAAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGGATCTTATACATTTT
390 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
*
26194820 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCAGACTCACATAGGCT
455 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
26194885 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCT
520 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCT
* *
26194950 TGCTCACATATGACGAAGCGATGTAGAGTGTTGATTCAAAGCTCTAGAA
585 TACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
*
26194999 AAGAGGTGCTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* * * * * * *
26195064 TGATGGATCGCAAGAGTGATACTTTTCATACATT-TAAACGTTTCGTGTGAAAGTGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
*
26195128 CTATGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* **
26195193 AAGGCACCTCATAGAGAATTAGATTCTATCCCAATTAACCGTGTTAGGCACTCCACAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
*
26195258 GCACAGCAGGGAGAAGAAATC-AATCATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAA
261 GCACAGCAGAGAGAAGAAATCGAA-CATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAA
26195322 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
325 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
* ** * *
26195387 ATAAGGTAGAATCGGGAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCGTATACATTGT
390 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
* *
26195452 AGGATTTTGGGATGTCCGACCCACGTATTGGATAACGATGCAAGAAAGTCAGACTCACATAGGCT
455 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
*
26195517 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACAGAGTCTGCTGAACAGGAAGATGATGCCT
520 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCT
* * *
26195582 TGCTCACATATGACGATGCAATGTAGAGTGTTGATTCCAAGCTCTAGAA
585 TACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* * *
26195631 AAGAGGTGGTTACGAGTATTATGTAACTTTTA-CGAATGACTATTACAAAAATGGACATGTATAC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATC-AATGACTATTCCAAATATGGACATGTATAC
* * *
26195695 CTGATGCATCGCAAGAGTGATACTTTTGATACATTC-AAAAGTTTCGTGTGAAAGTGTAGAAACA
65 CTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACA
* *
26195759 ACTATGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGCTCT
130 ACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCT
* * *
26195824 TTAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCAGGCACTCCACAAAAGAAT
195 TAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAAT
*
26195889 GGCACGGCAGAGAGAAGAAATCGAACATTGTTAGACATGGT-TGATTCGATATTAAGTTATTTGA
260 GGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTAT-ATTCGATATTAAGTTATTTGA
** * *
26195953 AGTTGTCAACCTCTTTTTGGGGATGTGTTGTACTAATGACTTGTTATATTCTGAATGATGTGCCA
324 AGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCA
* *
26196018 AATAAGGTAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCGTATACATTT
389 AATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTT
* *
26196083 TAGGATTTTGGGATGTCCCACCCACATATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGC
454 TAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGC
* * * *
26196148 TGGAGTTCTTCCAATCTAACAGAAGTGTTTTTAACACTGAGTCTGCTAAATAGGAAGATGATGTC
519 TGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCC
26196213 TTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
584 TTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* *
26196263 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTACTCAAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
*** * * *
26196328 TGATGCATTATTCTG-AACGATGTGCCAAA-TAAGGA-AGAA-TCGAAAACTCTATACAAATTGT
66 TGATGC---A-TC-GCAA-GA-GTG--AAACTTTTGATA-AATTCAAAAAGT-T-T-C---GTGT
* ** * ** * * ** ***
26196389 GGGA-TGGTAGGAAGTTGAA-T-C-TTATA--TATTCTAGG-ATTTTGGGAT-GTCCGA---CAC
115 GGAAGT-GTA-GAA--ACAACTACGTT-TACCCA-TAAAGGCACTTCGGTCTGGT-CGAGGTGGG
* * * ** *** * * * *
26196443 ACGTATTGGATAAAGATGCAAGAAATT-TGG-ACTCACATAGGGTA-GAG-TTCT-T-CCAATCT
173 GCATATT-TAT-CTGATG--AGTTCTTAAGGCAC-CTCATAGAGAATGAGATTCTATCCCAAT-T
** *** * ** ** * * * *** *
26196502 AGCAGAAGTGTTTTG-A--ACAC-TGAGTCTGCTGAACAGGA-AGATGATGCCTTGCTCACACA-
232 A--A-CCGTGTCGGGCACTCCACAACAGAATG--GCACAGCAGAGA-GAAGAAAT-C-GA-ACAT
* * * **** * * *** *
26196561 TG--ACGAAGCGAT-GTAGAGT-GTTAATTCCAAGCTCTAGAAAAAAGGTGGT-TACGAGTATTA
288 TGTTA-G-A-C-ATGGTATATTCGAT-ATT--AAG-T-TA-TTTGAA-GTTGTCAACCTCT-TTT
* * * * * * * * ** **
26196621 T--GTA-ACCTT-TATC-AATGACTAT-TCCA-AGTATGGACATG-TATACTTAATGCATCGCAA
341 TGGGGATACGTTGTA-CAAACGACT-TGT-TATATTCT-GA-ATGATGTGCCAAAT--AAGGC-A
* * * ** * * * *
26196678 GAGT-G-AAACT-TTTAATAAATTGAAAAAGTATCGTGT-GGAAGAGTAGAAAC--A-CCTATGT
398 GAATCGAAAACTCTAT-ACAAATTG---TGGCAT-G-GTAGG-A-AGTTGAATCTTATAC-AT-T
** *** * * ** * * ** *** * *
26196736 TTACCCATAAAGGCACTACGGTCTGGTCGAGGT-GGGGCATATTTAT-C-TGATGAGTTCTTAAG
453 TTA-GGATTTTGGGA-T---GTCCGACCCACGTATTGG-ATAAAGATGCAAGA-AAG-TC----G
* * * * * * *** ** *
26196798 GCAC-CTCATAGAGAAT-GAGATTCTATCCCAA-ATAACCG-TGTCGGGCACTCCACAACAGAAT
506 G-ACTCACATAG-G-CTGGAG-TTCT-T-CCAATCTAGCAGAAGT---GTTTTTAAC-ACTG-A-
* * * * ** * * * * ** * *
26196859 GGTACAGC-AAAGAGACGAA-ATCGAT-CATTGTTAGACAT-GGTCTATTCGATATTA-AGTTAT
559 -GT-CTGCTGAACAG--GAAGAT-GATGCCTTACT-CACATATGACGAAGCGAT-GTAGAG-T-G
* * * * **
26196919 TTAAAGTTGTCAACCTCTTTTTGGG
615 TT-GA-TT-CCAAGCTC---TAGAA
* * * * * * * * * * * * * * * *
26196944 GATACGTTG-TACAAACG-ACT-TGTTA--TATTCTGAACGA-TGTGCAAAATAAGGAAGAATCA
1 AAGAGGTGGTTAC-GA-GTATTATGTAACCT-TTATCAATGACTATTCCAAATATGG-A-CAT-G
* * * * * * * * * ** **
26197003 AAAACTCT-ATACAAATTGTGGCATG-GTAGGAAGTTGGATCTTATACATTTTAGGA-TTT--TG
60 TATAC-CTGATGC--A---TCGCAAGAGT-GAAACTT---T-TGATAAATTCAAAAAGTTTCGTG
* ** ** * * ** *
26197063 T-G-A-TGTCCG--AC-AC-ACGTATT--GGATAAAGATGCTAGAAAGTCAGACT-CACATAGGC
114 TGGAAGTGT-AGAAACAACTACGT-TTACCCATAAAG--GC----ACTTCGGTCTGGTC-GAGG-
* * * * * * * * ** * *
26197118 TGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGC-TGAACAGGAA-GATGATG
169 TGG-G-GCAT---ATTTATCTGATGAGTTCTTAAGGC--A-CCT-CAT--AGA-GAATGA-GAT-
* * * * * * * * **
26197181 CCT-TGCTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAGGC-TCTAGAAACGAGGTGCTT
220 TCTAT-C-C-CA-AT---TAACCG-TGTCG-G-G--CACTCCA--CAAC-AG--A--ATG-GCAC
* * * * * *
26197244 ATG-AGTATTATGTAACATTTATCAATGACTATTCCAAATATGGACAT-GTATACCTAAT-GCAT
265 A-GCAG-A-GA-G-AAGA--AATCGA--AC-ATT----GT-TAGACATGGTATA--T--TCG-AT
*** ** **** * * * * *
26197306 CGCAAGAGTGATACTTTTGATACAT-TCAA-AAAGTTTCGTGCGA-AAG-TGTAGAAACAACTAT
310 -ATTA-AGT--TA--TTTGA-AGTTGTCAACCTCTTTTTG-GGGATACGTTGTACAAACGACT-T
** * * * *** * * * ** ****
26197367 GTT-TACCCATAAAGGCACT-TCGGTCTGGTCGAGGTGGAGCAT--ATTTA-TCTGATGAGTTCT
366 GTTATATTC-TGAATG-A-TGT--GCCAAAT--AAG-GCAGAATCGA-AAACTCT-AT-ACAAAT
** *** ** * * * * * * *
26197427 TAAGGCACCTCAAAGAGAA--TGAGAT-TCTACCCCAATTAACCG-TGTCGGGCA-CTCC-A-CA
420 TGTGGCA--TGGTAG-GAAGTTGA-ATCT-TA-TACATTTTA-GGATTTTGGG-ATGTCCGACCC
* * ** * * *
26197485 ACAG-AATGGCACAGCAGAGA-G-AAGAAA-TC-GA-TCATTGTTAGACAT-G-GTATATTCGAT
477 AC-GTATTGG-ATA--A-AGATGCAAGAAAGTCGGACTCA--CATAGGC-TGGAGT-TCTTCCA-
* * * *** * ** * *
26197542 AT-TATGTTATTTGAA--GTTGTCAAC-CTCTTTTTGGGGATGC-GTTGTCCAA-ATGACTTG-T
532 ATCTA-G-CA---GAAGTGTTTTTAACACTGAGTCTGCTGA-ACAG--G---AAGATGA--TGCC
* ** * * * ** * * * * *
26197600 TATATTCTGA-ATGATG-TGCCAAATA-AG-GTAGAATCGAAAACTCTATACA
584 T-TACTCACATATGACGAAGCGATGTAGAGTGTTGATTC-CAAGCTCTAGA-A
** * ** * * * *
26197649 AA-TTGTGG-CACG-GTAAGAAGTTGAATC-TTATACATTTTAGGATTTTGGGATGTCCGACCCA
1 AAGAGGTGGTTACGAGTATTATG-T-AACCTTTAT-CA----ATGA--CT---AT-TCC-A---A
* * * * ** * * ** * *
26197710 CGTATTGGATAAAG-ATGCAAGAAAGTCGGACTTGCATAGGAAGATG-ATGTCTT-ACTCACATA
49 -ATA-TGGA-CATGTATACCTG--A-T-GCA-TCGCA-A-G-AG-TGAAACTTTTGA-T-AAAT-
* ** * * ** * * ***
26197772 TGATGAAG---CGATGTAG-AGTGTTGATTCCAAGCT-C---TA--GAAAAGAGGTGGTTACGAG
99 TCAAAAAGTTTCG-TGTGGAAGTGTAGA-AACAA-CTACGTTTACCCATAA-AGGCACTT-CG-G
* * * ** **** * * * * *
26197827 TATTATGT-AACCTTTATCAATGACTATTCCAAGTATGGACATGTA-TACTTAATGCATCGCA-A
158 T-CT-GGTCGAGGTGGGGC-AT-A-T-TT---A-TCT-G--ATG-AGTTCTTAAGGCACCTCATA
* * * ** * * * ** ** **
26197889 GAG--TGAAACTTTTGAT--AAATTGAAAAAGTTTCGTGTGGAAGAGTGGA-AACACCTATGTTT
209 GAGAATGAGA-TTCT-ATCCCAATT--AACCGTGTC--G-GG--CACTCCACAACA-GAATG-GC
* * * * * ** * * ** * * * * *
26197949 AC-CCATA-A-AGGCACTACGGTC--TGGTCGAGGTGGGGCATATT-TATCTGATGTGT-TCTT-
263 ACAGCAGAGAGAAGAAAT-CGAACATTGTTAGACAT--GGTATATTCGATATTAAGT-TAT-TTG
*** * * * ** * *** ** **
26198006 AAG--G-C-ACCTC--AAAGAGAATGA-GATTCTATCACAATTAACCGTGTCGGGCACCGCACAA
323 AAGTTGTCAACCTCTTTTTGGGGAT-ACG-TTGTA-CA-AA-CGA-CTTGT--TATA-TTCTGAA
* * ** * * * *
26198064 CAGAATG-G-CACAGCAGGGAGAA--G-AAA-TCGA-AC--ATTGTTAGACATGGTA--TA-TTC
379 -TG-ATGTGCCAAATAAGGCAGAATCGAAAACTCTATACAAATTG-T-GGCATGGTAGGAAGTT-
* * * * * * * * * * * *
26198117 G-A---TAT-TATGTT---A-TTTGAAGTTGT-C-AACCTCTTTTTGGGGAT-ACGTTG-TACAA
439 GAATCTTATACATTTTAGGATTTTG-GGATGTCCGACCCACGTATT--GGATAAAGATGCAAGAA
*** ** * * * * * ** * *
26198169 A--C-GACTTGTTATATTCTGAATGATGTGCCAAAT-AAGGCAGAA-TCGAAAAATCTATACAAA
501 AGTCGGAC-TCACATAGGCTGGA-GTTCTTCC-AATCTA-GCAGAAGT-G---TTTTTA-AC-AC
* * ** * * * * * *
26198229 T-TGT-GGCATG-GTAGGAAGTTGAAT--CTTA-T-ACATTTTAGGATTTTG-GAATATCAGACC
556 TGAGTCTGC-TGAACAGGAAGATG-ATGCCTTACTCACATATGACGA---AGCG-ATGT-AG---
* * * *
26198286 CACGTATTGGA-T-AAAGATGCAAGGAA
611 -A-GTGTT-GATTCCAAGCT-CTA-GAA
** * * * * * * * *
26198312 GTAAGACTCACATAGGCT-GGAGTTCTTCCAATCTAACAAAAGTGTTTTTAA-CACTGAGTCTGC
1 --AAG----AGGT-GGTTACGAG-TATT---ATGTAAC----CT-TTATCAATGACT-A-T-T-C
** * * * * * * * * * * **
26198375 TGAATATGAAGATG-ATGCCTCACTCACATGTGACGAAGCGATGTAGAGTATTGATTCCAAGCTC
46 CAAATATGGACATGTATACCTGA-T-GCAT-CG-C-AAGAG-TG-AAACTTTTGA-T--AAATTC
** * * * * * * * ** *
26198439 TAGAAAAGAGGTGGT-TACG-AGTATTATGTAACCTTTATCAATGAGTATTCCA-AATATGG-AC
101 -A-AAAAG-TTTCGTGT-GGAAGT-GTA-G-AAAC---AACTACGTTTA-CCCATAA-A-GGCAC
* * * * * * * * * * ** * *
26198500 -TCTGTATACCTGATACATCGCAAG-AGTG-AAACTT-T-TGATAAATACAAAAAGTA--TCAT-
153 TTC-G-GT--CTG----GTCG-AGGTGGGGCATATTTATCTGATGAGTTCTTAAGGCACCTCATA
* * ** * * ** * * *** * * * * **
26198557 GTGGAAGAGTAGAAAC-AGCTACGTTTACCCAT-AAAGGCACT-----TCGGTATGGTC-GAGGT
209 G-AGAA-TG-AGATTCTATC-CCAATTAACCGTGTCGGGCACTCCACAACAGAATGG-CACAGCA
* * *** ** * ** * * * ***
26198614 GGGGGATATTTATCTGATGAGTTCTT--A-A-GGTACCTCA-AAGAGAATGAGATTCTATCCCAA
269 GAGAGA-AGAAATC-GAACA-TTGTTAGACATGGTA--T-ATTCGA-TATTA-AGT-TATTTGAA
* * * * * * ** * * *
26198674 --T-T-AA-C-CGTGTCGGGCACTCCACAACAGAATGGCACAGAA-GA-GAG-AAGAAATC-G-A
325 GTTGTCAACCTCTTTTTGGGGA-T-----AC-G--TTGTACA-AACGACTTGTTA-TATTCTGAA
* ** * * * * * * * * ** * * * ** *
26198728 TCAT-TGTTAGACATGGTATATTCGATATTA-TGTTATTTGAAGTTGTGAACCTCTTTTTGGGGA
379 TGATGTGCCAAATAAGGCAGAATCGA-A-AACT-CTA-TACAAATTGTG----GCATGGT-AGGA
* * * * * * ** * ** **
26198791 TACGTTGTA-C--AAACGACTTGTTA-TATTCT-GAATGT-TGTGCAAAATAAGGCAGAATCGAA
435 -A-GTTGAATCTTATAC-A-TT-TTAGGATTTTGGGATGTCCGACCCACGTATTG--G-AT--AA
* ** * * * * ** * *** *
26198850 A-ACT-CTATACAAATTGT-GGGGT-A-GTAGGAAGTTGA-ATCTTATATATTCTAGGATTTTGG
490 AGA-TGC-A-AGAAA--GTCGGACTCACATAGG--CTGGAGTTCTTCCA-A-TCTAGCA-GAAGT
* ** * * * * * ** * * * *
26198909 GATGTCCAAC-C-CACGTAT--TGGATA--AAGATGCAAG--AAATTCA-GTCTCAC-ATAG-G-
545 G-TTTTTAACACTGA-GTCTGCTGAACAGGAAGATG-ATGCCTTACTCACATATGACGA-AGCGA
* *
26198962 -GTAGA--GTT-CTTCCAA--TCTAGCAG
606 TGTAGAGTGTTGATTCCAAGCTCTAG-AA
* ** * **** * * * * *
26198985 AAG-TGTTTTTAACACTGAGT-CTACTG-AACAGGAAGAT-GATGCCT-TGCTCACACATGACGA
1 AAGAGGTGGTT---AC-GAGTATTA-TGTAAC--CTTTATCAATGACTAT--TC-CAAAT-ATGG
* * * * *
26199045 AGCGATGTAGA-GTGTTAATTCCAAGCTCTAGAAAAAAGGTGGTTACGAA-TATTATG-TAACCT
55 A-C-ATGTATACCTG---A-TGC-A--TC--G-CAAGA-GT-G--A--AACT-TT-TGATAA---
* ** * * * * * * *
26199107 TTATCAATGACTATTCCAAGTATGGACATGTATACTTAATGCATCGCGAGAGTGAAACTTTTGAT
97 AT-TCAAAAAGT-TT-C--GTGTGGA-A-GTGTA--GAA---A---C-A-ACT---ACGTTT-AC
** * * * ** *** *
26199172 AAATTGAAA--AAGTATC-GTGTGGAAGA-GTAGAAACACCTACGTTTACCCATAAAGGCACT-A
141 CCA-T-AAAGGCACT-TCGGTCTGGTCGAGGT-GGGGCA--TA--TTTA-TC-T----G-A-TGA
* * ***** *** * * * *** *
26199232 CGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTTAAGGCACCTCA-TAGAGAATG-AG
190 -GTTCT--T-AAGGCACCTCATAGAGA-ATGA-GA-TTC-T-A-TC-CC-AATTA-ACCGTGTCG
** * * ** * * * * * ** ** *
26199295 ATTCTA-TCCCAATTAACCGTGTCGGGAACACCATA-A-CAG-AATGGCACAGCAGAGAGAAGAA
242 -GGC-ACT-CC-A-CAACAGAAT--GGCACAGCAGAGAGAAGAAATCG-A-A-CATTG-TTAGAC
* * * * * * * *
26199356 ATCGAACATT-GTTA-GACATGGTGTATTCG-A-TAT-T-AA-GT-TATTT---GA-A-GTTGT-
296 ATGGTATATTCGATATTA-A--GT-TATTTGAAGT-TGTCAACCTCTTTTTGGGGATACGTTGTA
** * * * * ** *
26199407 C-AACCTCTTTTTAGGGATATCTTGTGCAAACGACTTCTTATGTTCTGAATGATGTGCCA-AATT
356 CAAACGACTTGTT----ATA--TTCTG---A--A----TGATGTGCCAAAT-AAG-G-CAGAA-T
* ** * * *
26199470 AGGTAGATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTAGGA
402 -CG-A-A---AACTCTATACAA--ATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTAGGA
* * * **
26199535 TTTTGGGATGTCTGACCCACGTATTGGATAAAGATTCAAGGAAGTAAGACTCACATAGGCTGGAG
459 TTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTGGAG
* * *
26199600 TTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGTTGAACAAGAAGATGATGCCTTGCT
524 TTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTTACT
* ** * *
26199665 CACATATGAAGAAGTTAAGTAGA-TAGTTGATTCCCAGCTCTAGAA
589 CACATATGACGAAGCGATGTAGAGT-GTTGATTCCAAGCTCTAGAA
26199710 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* *
26199775 TGATACATCGCAAGAGTGAAACTTTTGATAAATTC-AAAAGTTTCGTGTGGAAGTGTAGAAACAG
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
*
26199839 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGGTGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* * *
26199904 AAGGCACCTCAAAGAGAATGAGATTCTATCGCAATTAACCGTGTCGGGCAGTCCACAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* *
26199969 GCACAGCAGAGAGAAGAAATCGATCATTGTTAGACATGGTATATTCGATATTATGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* * *
26200034 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTTTGAATGTTGTGCAAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
* * * *
26200099 TAAGGAAGAATCGAAAACTCTATACAAATTGTGGGATGGTAGGAAGTTGAATCTTATATATTCTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
* * * * *
26200164 GGATTTTGGGATGTCTGACCCACGTATCGGATAAAGATGCAAGAAATTCGGACTCACATAGGGTA
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
* *
26200229 GAGTTCTTCCAATCAAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACATGAAGATGATGCCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
* *
26200294 GCTCACATATGACGAAGCGATGTAGAGTGTTAATTCCAAGCTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* * * *
26200342 AAAAGGTGGTTACGAGTATTATGTAACCCTTATCAATGACTATTCCAAATATAGACGTGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* * * *
26200407 TGATGTATCGCAAGAGTGAAACTTTTGATGAATTCAAAAAGTGTT-GTATGGAAGTGTACAAACA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGT-TTCGTGTGGAAGTGTAGAAACA
* * * *
26200471 ACTACGTTTACCAATAAAGGAACTTCGTTCTGGTCGAGGTGGTGCATATTTATCTGATGAGTTCT
130 ACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCT
*
26200536 TAAGGCACCTCATAGAGAATGAGATTCTATCCCAAATAACCGTGTCGGGCACTCCACAACAGAAT
195 TAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAAT
* * * * *
26200601 GGCACGGCAAAGAGAAGAAATCGATCATTGTTAGACATGGTCTATTCGATATTAAGTTATTTAAA
260 GGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAA
* *
26200666 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTCTATTCTGAACGATGTGCCAA
325 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
* * * *
26200731 ATAAGGAAGAATCAAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGGATCTTATACAATTT
390 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
* ** * *
26200796 AAGATTTTGTTATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTTGGAATCACATAGGCT
455 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
* * * * *
26200861 GGAGTGT-TTCCAATCTAACAGAAGTATATTTAACACTGAGTCTGCTGAATAGGAAGATGATGTC
520 GGAGT-TCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCC
26200925 TTACTCAC--ATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
584 TTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* * * *
26200973 AAAAAGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAGTATGGACATGTATACT
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
*
26201038 TAATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* *
26201103 CTACGTTTACCCATGAAGGAACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* *
26201168 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTTCATAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* * * * *
26201233 GTACAGCAGGGAGAAGAAATCGATCATTGTTACACATGGTATATTCGATATTAATTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* * *
26201298 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGAATTGTTATATTCAGAACGATGTGCCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
* * * * *
26201363 TCAGGAAGGATCGAAAACACTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACAATTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
* ** *
26201428 AGATTTTGTTATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGAATCACATAGGCTG
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
* * * *
26201493 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTAAGTCTGCTGAACGGGAAAATGGTGCCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
* * * *
26201558 GCTCACAAATGACGAAACGATGTAGAGTGTTGATCCCAAGCTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* * *
26201606 AATAGATGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACT
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* * ** *
26201671 TGATGCATCGCAAGAGTGAAACTTGTGATAAATTGAAAAAGTTTCAAGTGGAAGTGTAGAAAGAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
*
26201736 CTACGTTTTCCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* * * *
26201801 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGAACACCATAATAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
26201866 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* * *
26201931 TTGTCAACCTCTTTTTGGGGATATGTTGTACAAACGACTTGTTATGTTCTGAATGATATGCCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
*
26201996 TTAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
* * * *
26202061 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATACAATACAGTCGGACTCACATAGGCTA
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
* *
26202126 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGTTGAACAAGAAGATGATGCCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
* * ** * *
26202191 GCTCACATATGAAGAAGTTAAGTAGA-TAGTTGATTCCCAGCTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGT-GTTGATTCCAAGCTCTAGAA
*
26202239 AAGAGGTGGTTACGAGTGTTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* * *
26202304 TGTTACATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAG
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* *
26202369 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGATGTGGGGCATATTCATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* * * *
26202434 AAGGAACCTCAAAGAGAATGAGATTCTATCCCAATTAACTGTGTCGGGCACTCCACAATAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* *
26202499 GCACAGCAGAGAGAAGAAATCGATCATTGTTAGACATGGTATATTCGATATTATGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* *
26202564 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGTTGTGCAAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
* * *
26202629 TAAGGCAGAATCGAAAACTCTATACAAATTGTAGG-ATGGTAGGAAGTTGAATCTTATATACTCT
391 TAAGGCAGAATCGAAAACTCTATACAAATTGT-GGCATGGTAGGAAGTTGAATCTTATACATTTT
* *
26202693 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAATTCGGACTCACATAGGGT
455 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
* *
26202758 AGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGATGATGATGCCT
520 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCT
* *
26202823 TGCTCACATATGACGAAGCAATGTAGAGTGTTGATTCCAAGCTCTAGAA
585 TACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* * * *
26202872 ACGAGGTGCTTACGAGTATTATGTAACATTTGTCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* * * * *
26202937 TAATGCATCGCAAGAGTGATACTTTTGATACATTCAAAAAGTTTCGTGCGAAAGTGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* * * *
26203002 CTATGTTTACCCGTAAAGGCACTTCGATCTGGTCGAGGTGGCGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* * *
26203067 AAGGCACCTCA-AGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACCCCCCAACTGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* * *
26203131 GCATAGCAAAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAT
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* * *
26203196 TTGTCAACCTCTTTTTGGGGATGCGTTGTCCAAATGACTTGTTATATTCTGAATGATGTGCCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
* * * *
26203261 TAGGGTAGAATCGAAAACTCTATACAAATTGTGGCACGATAGGAAGTTGAATCTTATACATTTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
*
26203326 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCATATAGGCTG
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
* * * * *
26203391 GAGTTCTTCCAATCTAACAGAAGTGTTTTTAACAATAAGTCTGCTGAATAGGAAGATGATGTCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
26203456 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
** *
26203504 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAGGATGGACATGTATACT
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* * * *
26203569 TAATGCATCGCAAGAGTGAAACTTTTGATAAATTGAAAAAGTTTCGTGTGGAAGAGTAGAAACAC
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* *
26203634 CTATGTTTACCCATAAAGGCACTACGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* * * * * *
26203699 AAGGCACCTCATAAAGAATGAGATTCTATCCCAATTAATCATGTCGGGAACACCATAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
26203764 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* * ** *
26203829 TTGTCAACCTATTTTTGGGGATATGTTGTACAAACGACTTGTTACGTTCTGAAAGATGTGCCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
* *
26203894 TTAGGCAGAATCGAAAACTCTATCCAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
* * * * *
26203959 GGATTTTGGGATGTCTGACCCACGTATTGGATAAAGATACAATACAGTCGGACTCACATAGGCTA
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
* * *
26204024 GAGTTCTGCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGTTGAACAAGAAGATGATGCCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
* * ** * *
26204089 GCTCACATATGAAGAAGTTAAGTAGA-TAGTTGATTCCCAGCTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGT-GTTGATTCCAAGCTCTAGAA
*
26204137 AAGAGGTGGTTACGAGTGTTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
*
26204202 TGATACATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
*
26204267 CTACGTTTACCCATAAAGGAACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* * *
26204332 AAGGCACCTCATAGAGGATGAGATTCTATCCCAATTAACCGTGTCAGGCACTCCATAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* * * *
26204397 GTACAGCAGGGAGAAGAAATC-AATCATTGTTACACATGGTATATTCGATATTAATTTATTTGAA
261 GCACAGCAGAGAGAAGAAATCGAA-CATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAA
* **
26204461 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGTTGTGGAAA
325 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
*
26204526 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGGATGGTAGGAAGTTGAATCTTATACATTTT
390 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
* * *
26204591 AAGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCAGAATCACATAGGCT
455 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
**
26204656 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAATGC-GAAGTCTGCTGAACAGGAAGATGATGCC
520 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTG-AGTCTGCTGAACAGGAAGATGATGCC
* * ** * *
26204720 TTGCTCACAAATGACGAAATGATGTTGAGTGTTGATCCCAAGCTCTAGAA
584 TTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* * *
26204770 AATAGATGGTTATGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* * ** *
26204835 TGATGCATCGCAAGAGTGAAACTTGTGATAAATTGAAAAAGTTTCAAGTGGAAGTGTAGAAAGAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* *
26204900 CTACGTTTTCCCATCAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* * * *
26204965 AACGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACCCCAAAATAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
26205030 GCACAGCA-AGGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAA
261 GCACAGCAGA-GAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAA
* *
26205094 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAGTAATGTGCCAA
325 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
*
26205159 ATAACGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
390 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
* * * * *
26205224 AGGATTTTGGGAAGTCTGACTCATGTATTGGATAAAGATACAAGAAAGTCGGACTCACATAGGCT
455 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
* * *
26205289 GGAGTTCTTCCAATTTAGCAGAAGTGTTTTTGACACTGAGTCTGCTGAACAGGAATATGAT-CTC
520 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGC-C
*
26205353 TTACTCACATATGACGAAGCGATGTAGAGTTTTGATTCCAAGCTCTAGAA
584 TTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* ** *
26205403 AAGATGTGCCTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAAAATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* *
26205468 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGAGTGGAAGTGTAGAAACAG
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* * *
26205533 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTTGAGGTGGGGCATATTTATCCGATGAGCTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* * *
26205598 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTTGGGTACTTCACAA-ACGAAT
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACA-GAAT
* *
26205662 GGCACAGCAGGGAGAAGAAATCGATCATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAA
260 GGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAA
*
26205727 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATATGCCAA
325 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
* *
26205792 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCGTGTACATTTT
390 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
*
26205857 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTAGGACTCACATAGGCT
455 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
* *
26205922 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAATATGAAGATGATGCCT
520 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCT
* *
26205987 CACTCACATATGACGAAGCGATGTAGAGAGTTGATTCCAAGCTCTAGAA
585 TACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* * *
26206036 AAGTGATTGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* * *
26206101 TGATTCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGAGTGGAAGTGTAGAAACAG
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* * *
26206166 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTTGAGGTGGGGCATATTTATCCGATGAGCTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* *
26206231 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCATGTCGGGCACTCCACAATAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* *
26206296 GCACAGCAGAGAGAAGAAATCGATCATTGTTAGACATGGTATATTTGATATTAAGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* **
26206361 TTGTCAACCTCTTTTTGAGGATACACTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
*
26206426 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCGTATACATTTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
* * * *
26206491 GGATTCTGGGATGTCCGACCCACGTATAGGATAGAGATGCAAGAAAGTTGGACTCACATAGGCTG
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
* * *
26206556 GAGTTCTTCCAATCTAGGAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATTCCTC
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
* * *
26206621 AGTCACATATGATGAAGCGATGCAGAGTGTTGATTCCAAGCTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* * *
26206669 AAGAGGTGGTTATGAGTGTTATGTAACCTTTATCAATGACTCTTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
26206734 TGATGCATCGCAAGAGTGAAACTTTTGATAAAATTTCAAAAAGTTTCGTGTGGAAGTGTAGAAAC
66 TGATGCATCGCAAGAGTGAAACTTTTGAT-AAA-TTCAAAAAGTTTCGTGTGGAAGTGTAGAAAC
* * * * * *
26206799 ATCTACGTTTTCCCATAAAGGCAGTTCTGTCTGGTCTAGGTAGGGG-ATATTTATCTGATTAGTT
129 AACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGT-GGGGCATATTTATCTGATGAGTT
* *
26206863 CTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGCCAGGCACTCCACAACAGA
193 CTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGA
* * * *
26206928 ATGGCACCGCAGAGATAAGAAAAT-GAACATTATTAGACATGGTATATTCAATATTAAGTTATTT
258 ATGGCACAGCAGAGAGAAG-AAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTT
* * * *
26206992 GAAGTTGTCAACCACTTTTTAGGGATACGTTGTACAAACAACTTGTTATGTTCTGAATGATGTGC
322 GAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGC
* *
26207057 CAAAAAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCGTATACAT
387 CAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACAT
* * * *
26207122 TTTAGGATTCTGGGATGTCCGACCCACGTATAGGATAGAGATGCAAGAAAGTTGGACTCACATAG
452 TTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAG
* *
26207187 GCTGGAGTTCTTCCAATCTAGGAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATT
517 GCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATG
* * *
26207252 CCTCACTCACATATGATGAAGCGATGCAGAGTGTTGATTCCAAGCTCTAGAA
582 CCTTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* * *
26207304 AAGAGGTGGTTATGAGTGTTATGTAACCTTTATCAATGACTCTTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
26207369 TGATGCATCGCAAGAGTGAAACTTTTGATAAAATTTCAAAAAGTTTCGTGTGGAAGTGTAGAAAC
66 TGATGCATCGCAAGAGTGAAACTTTTGAT-AAA-TTCAAAAAGTTTCGTGTGGAAGTGTAGAAAC
* * * * * *
26207434 ATCTACGTTTTCCCATAAAGGCAGTTCTGTCTGGTCTAGGTAGGGG-ATATTTATCTGATTAGTT
129 AACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGT-GGGGCATATTTATCTGATGAGTT
* * *
26207498 CTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAATCGTGCCAGGCACTCCACAACAGA
193 CTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGA
* * * *
26207563 ATGGCACCGCAGAGATAAGAAAAT-GAACATTATTAGACATGGTATATTCAATATTAAGTTATTT
258 ATGGCACAGCAGAGAGAAG-AAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTT
* * * *
26207627 GAAGTTGTCAACCACTTTTTAGGGATATGTTGTACAAACGACTTGTTATGTTCTGAATGATGTGC
322 GAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGC
* *
26207692 CAAAAAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACAA
387 CAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACAT
* *
26207757 TTTAGGATTTTGGGATTTCCAACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAG
452 TTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAG
** *
26207822 GCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAATGCTGAGTCTACTGAACAGGAAGATGATG
517 GCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATG
* * * *
26207887 CCTTGCTCACATATGGCGAAGTGATGTAAAGTGTTGATTCCAAGCTCTAGAA
582 CCTTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
*
26207939 AAGAGGTGGTTACGAGTATTATGTAACTTTTATCAATGACTATTCCAAATATAGG-CATGTATAC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATAT-GGACATGTATAC
* * * * *
26208003 TTAATGCATTGCAAGTGTGAAACTTTTGATAAATTCAAAAAGTTTTGTGTGGAAGTGTAGAAACA
65 CTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACA
* *
26208068 ACTAC-TTTACCCGTAAAGGCACTTTGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCT
130 ACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCT
* *
26208132 TAAGGCACCTCATAGAAAATGAGATCCTATCCCAATTAACCGT-TCCGGGCACTCCACAACAGAA
195 TAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGT-CGGGCACTCCACAACAGAA
* *
26208196 TGGCACAACAGAGGGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGA
259 TGGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGA
* * *
26208261 AGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAAC-ATCTTGTTATATTCTGAATGTTATGCA
324 AGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGA-CTTGTTATATTCTGAATGATGTGCC
26208325 AAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATT
388 AAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATT
* * * *
26208390 TTAGGATTTTGGGATGTCCAACCCACATATTGGATAAAGATGCAAGAAATTCGGACTCACATAAG
453 TTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGG
* * * ** * *
26208455 CTGTATTTCCTCCAATCTAGCAGACTTGTTTTTAACACTGAGTCTACTGAACAGGAAGATGATAC
518 CTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGC
* *
26208520 CTTACTCAGA-ATTGACGAAGCGATGTAGAGTGTTGATTCCAAGCACTAGAA
583 CTTACTCACATA-TGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
**
26208571 AAGAGGTGGTTATAAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* * *
26208636 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCATGCGGAAGTGTAGAAATAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* *
26208701 CTACGTTTACCCAAAAAGGCACTTCAGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* *
26208766 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCATAATAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* *
26208831 GCACAGCAGAGAGAAGAAATCAAACATTGCTAGACATGGTATATTCGATATTAAGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
** * * * * *
26208896 TTGTCAAATTCCTTTTTGGGGATACGTTGTAAAAATGACTTGTTATATTTTAAATGTTGTGCCAA
326 TTGTCAACCT-CTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
* * *
26208961 ATAAGGCAGAATTGAAAACTCTATACAAATTGCGGCATGGTCGGAAGTTGAATCTTATACATTTT
390 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
* * * *
26209026 AGGATTTTTGGATGTCCAACCCATGTATTGGATAAAGATGCAAGAAAGTCAGACTCACATAGGCT
455 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
*
26209091 GGAGTTCTTCCAATCTAGCAGAAGT-TCTTTTAACACTAAGTCTGCTGAACAGGAAGATGATGCC
520 GGAGTTCTTCCAATCTAGCAGAAGTGT-TTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCC
26209155 TTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
584 TTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
*
26209205 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACT
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* * * *
26209270 TAATGCATTGCAAGAGTGAAACTTTTGATAAATTGAAAAAGTTTCGTGTGGAAGAGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
*
26209335 CTACGTTTACCCATAAAGGCACTACGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* * * * * * * *
26209400 AAGGTACCTGATAGAGAATGAGATTCTATCCTAATTAATCATGTCGGGAACACCATAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
*
26209465 GCACAGCAGACAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
** *
26209530 TTGTCAACCTCTTTTTGGGGATATATTGTACAAACGACTTGTTATGTTCTGAATGATGTGCCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
* *
26209595 TTAGGCAGAATCGAAAACTCTAGACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
* ** *
26209660 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGGAAGTAAGACTCACATAGGCTA
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
* * *
26209725 GAGTTCTTCCAATCTAGCATAAGTGTTTTTAACACTGAGTCTGCTAAACAAGAAGATGATGCCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
* ** * *
26209790 GCTCACATATGACGAAGTTAAGTAGA-TAGTTGATTCCCAGCTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGT-GTTGATTCCAAGCTCTAGAA
*
26209838 AAGAGGTGGTTACGAGTAGTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* * *
26209903 TGATACATCGCAAGAGTGAAACTTTTGATAAATCCCAAAAGTTTCGTGTGGAAGTGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
26209968 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* * *
26210033 AAGGCACCTCATAGAGAATCAGATTCTATCCCAATT-ACACATGTCAGGCACTCCACAACAGAAT
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAAC-CGTGTCGGGCACTCCACAACAGAAT
* * * *
26210097 GGCACAGCAGAGATAAGAAATCGATCATTGTTAGACATGGTATATTCGATATTAAGTAATTTCAA
260 GGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAA
* * *
26210162 GTTGTCAAACTCTTTTTGGGGATACGTTGTACAAATGACTTATTATATTCTGAATGATGTGCCAA
325 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
**
26210227 ATAAGGCAGAATCGAAAACTCTATACAAATTGCAGCATGGTAGGAAGTTGAATCTTATACATTTT
390 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
* * *
26210292 AGGATTTTGGGATGTCCGACACA-GTATTAGATAAAGATGCAAGAAAGTCAGACTCACATAGGCT
455 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
* * * *
26210356 GGAGTTCTTCCAATCTAACAAAAGTGTTTTTAACACTGAGTCTGCTGAATATGAAGATGATGCCT
520 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCT
* *
26210421 CACTCACATATGACGAAGCGATTTAGAGTGTTGA-TCCAAGCTCTAGAA
585 TACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* * *
26210469 AATAGGTGGTTACGAGTATTATGTAAACC-TTATCAATGACTATTCCAAATATAGACGTGTATAC
1 AAGAGGTGGTTACGAGTATTATGT-AACCTTTATCAATGACTATTCCAAATATGGACATGTATAC
* * *
26210533 CTGATGTATCGTAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAATA
65 CTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACA
*
26210598 ACTACGTTTACCCATAAAGGCACTTCGGTCCGGTCGAGGTGGGGCATATTTATCTGATGAGTTCT
130 ACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCT
* * *
26210663 TAAGGCACCTCATAGAGAAAGAGATTCTATCCCAAATAACCGTGTCGGGCACTTCACAACAGAAT
195 TAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAAT
* *
26210728 GGCACAGCAGAGAGAAGAAATCGAACATTGCTAGACATGGTATATTCGATATTAAGTCATTTGAA
260 GGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAA
** * *
26210793 GTTGTCAAATTCTTTTTGGGGATACGTTGTACAAATGACTTGTTATATTCTGAATGTTGTGCCAA
325 GTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAA
*
26210858 ATAAGACAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
390 ATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTT
* * * *
26210923 TGGATTTTGGAATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCAGACTCACATAGGTT
455 AGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCT
* * *
26210988 GGAGTTCTTCCAATCTAGTAGAAGTGTTTTTAACACTGCGTTTGCTGAACAGGAAGATGATGCCT
520 GGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCT
* * *
26211053 TACTCACATATGGCGAAGTTG-TGTACAGTGTTGATTCCAAGCTCTAGAA
585 TACTCACATATGACGAAG-CGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* * *
26211102 AAGAGGTGGTTACGAGTATTATGTAACTTTTATCAATGACTATTCCAAATATGGGCATGTATACT
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* * * *
26211167 TAATGCATTGCAAGTGTGAAACTTTTGATAAATTCAAAAAGTTTTGTGTGGAAGTGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* *
26211232 CTAC-TTTACCCGTAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTGTCTGATGAGTTCTT
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
* * *
26211296 AAGGCACCTTATAGAGAATGAGATTCTATTCCAATTAACCGTTTCGGGCACTCCACAACAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
*
26211361 GCACAGCAGAGAGAAGAAATCAAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* *
26211426 TTGTCAACCTCTTTTTGGGGATACGTTATACAAACAACTTGTTATATTCTGAATGATGTGCCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
*
26211491 TAAGGCAGAATCAAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
* *
26211556 -GATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCAGACTCACATAGGCTA
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
*
26211620 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTACTGAACAGGAAGATGATGCCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
26211685 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
* *
26211733 AAGTGGTGGTTACGAGTATTATGTGACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
1 AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
* *
26211798 TGATGCATCGCAAGAGTGAAACTTTTAATAAATTCGAAAAGTTTCGTGTGGAAGTGTAGAAACAA
66 TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
* *
26211863 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGATGGGGCATATTTATCTGATGAGTTCTG
131 CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
** *
26211928 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCTGCAATAGAATG
196 AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
* * *
26211993 GCACACCAGAGAGAAGAAATTGAACATTTTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
261 GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
* *
26212058 TTGTCAACCTCTTTTTCGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTACCAAA
326 TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
* *
26212123 TAAGGTAGAATCGAAAACTCCATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
391 TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
*
26212188 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTTGGACTCACATAGGCTG
456 GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
* *
26212253 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTTTACTGAACAGGAAGATGATGCCTT
521 GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
* *
26212318 ACTCACATATGACGAAGCGATGTAGAGTCTTGATTCCAAACTCTAGAA
586 ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
26212366 A
1 A
26212367 GGAGCTATGG
Statistics
Matches: 23741, Mismatches: 2867, Indels: 1764
0.84 0.10 0.06
Matches are distributed among these distances:
630 637 0.03
631 1555 0.07
632 4786 0.20
633 12795 0.54
634 905 0.04
635 1195 0.05
636 14 0.00
637 4 0.00
638 7 0.00
639 10 0.00
640 14 0.00
641 18 0.00
642 19 0.00
643 23 0.00
644 32 0.00
645 29 0.00
646 12 0.00
647 22 0.00
648 30 0.00
649 36 0.00
650 11 0.00
651 24 0.00
652 17 0.00
653 11 0.00
654 22 0.00
655 20 0.00
656 16 0.00
657 14 0.00
658 28 0.00
659 27 0.00
660 22 0.00
661 13 0.00
662 29 0.00
663 39 0.00
664 22 0.00
665 40 0.00
666 28 0.00
667 16 0.00
668 21 0.00
669 20 0.00
670 27 0.00
671 25 0.00
672 24 0.00
673 49 0.00
674 27 0.00
675 26 0.00
676 20 0.00
677 22 0.00
678 39 0.00
679 21 0.00
680 27 0.00
681 40 0.00
682 19 0.00
683 10 0.00
684 21 0.00
685 12 0.00
686 10 0.00
687 15 0.00
688 6 0.00
689 15 0.00
690 11 0.00
691 11 0.00
692 9 0.00
693 15 0.00
694 14 0.00
695 13 0.00
696 8 0.00
697 17 0.00
698 4 0.00
699 3 0.00
700 4 0.00
701 4 0.00
702 16 0.00
703 7 0.00
704 14 0.00
705 10 0.00
706 4 0.00
707 11 0.00
708 8 0.00
709 6 0.00
710 12 0.00
711 16 0.00
712 24 0.00
713 39 0.00
714 36 0.00
715 28 0.00
716 24 0.00
717 18 0.00
718 32 0.00
719 26 0.00
720 34 0.00
721 44 0.00
722 36 0.00
723 32 0.00
724 38 0.00
725 18 0.00
726 18 0.00
727 25 0.00
728 8 0.00
729 6 0.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (633 bp):
AAGAGGTGGTTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGTATACC
TGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGAAACAA
CTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAGTTCTT
AAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACAGAATG
GCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATTTGAAG
TTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTGCCAAA
TAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACATTTTA
GGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATAGGCTG
GAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGATGCCTT
ACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAA
Found at i:26214620 original size:27 final size:25
Alignment explanation
Indices: 26214570--26214626 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
26214560 TACCAAAAGA
*
26214570 AAAATCGTCAAAATTTTACCAGGGGT
1 AAAATCATCAAAATTTTACCA-GGGT
**
26214596 AAAATCATCAAAATTTTTATGAGGGT
1 AAAATCATCAAAA-TTTTACCAGGGT
26214622 AAAAT
1 AAAAT
26214627 AGGGATGAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.30
Consensus pattern (25 bp):
AAAATCATCAAAATTTTACCAGGGT
Found at i:26226892 original size:27 final size:27
Alignment explanation
Indices: 26226862--26227017 Score: 167
Period size: 27 Copynumber: 5.8 Consensus size: 27
26226852 AAAATAGGTA
26226862 AAAATTATCGAAATACCCCTGATTTGT
1 AAAATTATCGAAATACCCCTGATTTGT
*
26226889 AAAATTATCGAAATACCCC-CAGTTTGT
1 AAAATTATCGAAATACCCCTGA-TTTGT
*
26226916 AAAATTATCGAAATA-CCCTCAGTTTGT
1 AAAATTATCGAAATACCCCTGA-TTTGT
* *
26226943 AAAATTA-CTGAAATA-GCCTCAATTTGT
1 AAAATTATC-GAAATACCCCT-GATTTGT
* * * *
26226970 AAAATTACCAAAAGACCTCTGATTTGT
1 AAAATTATCGAAATACCCCTGATTTGT
*
26226997 AAAATTACCGAAATACCCCTG
1 AAAATTATCGAAATACCCCTG
26227018 TAGGTGAAAA
Statistics
Matches: 112, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
26 5 0.04
27 103 0.92
28 4 0.04
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (27 bp):
AAAATTATCGAAATACCCCTGATTTGT
Found at i:26226942 original size:54 final size:54
Alignment explanation
Indices: 26226862--26227015 Score: 197
Period size: 54 Copynumber: 2.9 Consensus size: 54
26226852 AAAATAGGTA
*
26226862 AAAATTATCGAAATACCC-CTGATTTGTAAAATTATCGAAATACCCCCAGTTTGT
1 AAAATTATCGAAATACCCTCTGATTTGTAAAATTA-CGAAATACCCCCAATTTGT
* * *
26226916 AAAATTATCGAAATACCCTCAG-TTTGTAAAATTACTGAAATAGCCTCAATTTGT
1 AAAATTATCGAAATACCCTCTGATTTGTAAAATTAC-GAAATACCCCCAATTTGT
* * *
26226970 AAAATTACCAAAAGA-CCTCTGATTTGTAAAATTACCGAAATACCCC
1 AAAATTATCGAAATACCCTCTGATTTGTAAAATTA-CGAAATACCCC
26227016 TGTAGGTGAA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 6 0.07
54 77 0.90
55 3 0.03
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (54 bp):
AAAATTATCGAAATACCCTCTGATTTGTAAAATTACGAAATACCCCCAATTTGT
Found at i:26229918 original size:11 final size:11
Alignment explanation
Indices: 26229902--26229944 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
26229892 CTTAAAATAC
26229902 ATAAAATATTA
1 ATAAAATATTA
*
26229913 ATAAAACATCTTA
1 AT-AAA-ATATTA
26229926 ATAAAATATTA
1 ATAAAATATTA
*
26229937 TTAAAATA
1 ATAAAATA
26229945 ATTTTACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 14 0.52
12 6 0.22
13 7 0.26
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (11 bp):
ATAAAATATTA
Found at i:26231908 original size:83 final size:83
Alignment explanation
Indices: 26231802--26231978 Score: 302
Period size: 83 Copynumber: 2.1 Consensus size: 83
26231792 GAATACTATG
*
26231802 ATGATGCATGAACTCTACTGAATGTGAATGCTAAACATGCATAAGATTAATTGTGGTATATGGGT
1 ATGATGCATGAACTCTACTGAATGTGAATGCTAAACATGCATAAGATTAATTGTGGTATACGGGT
*
26231867 ATCCACCAATGTAGTTAA
66 ATCCACCAAAGTAGTTAA
**
26231885 ATGATGCATGAACTCTGTTGAATGTGAATGCTAAACATGCATAAGATTAATTGTGGTATACGGGT
1 ATGATGCATGAACTCTACTGAATGTGAATGCTAAACATGCATAAGATTAATTGTGGTATACGGGT
26231950 ATCCACCAAAGTAGTTAA
66 ATCCACCAAAGTAGTTAA
*
26231968 AT-ATGTATGAA
1 ATGATGCATGAA
26231979 ATAATTATGG
Statistics
Matches: 89, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
82 8 0.09
83 81 0.91
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (83 bp):
ATGATGCATGAACTCTACTGAATGTGAATGCTAAACATGCATAAGATTAATTGTGGTATACGGGT
ATCCACCAAAGTAGTTAA
Found at i:26235875 original size:37 final size:37
Alignment explanation
Indices: 26235825--26235903 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26235815 TTATTACGAA
* * *
26235825 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
26235862 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26235899 GTCTT
1 GTCTT
26235904 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26236344 original size:51 final size:47
Alignment explanation
Indices: 26236022--26236469 Score: 675
Period size: 47 Copynumber: 9.4 Consensus size: 47
26236012 CCTTTCGGGA
* * * *
26236022 CTTATCACATTTATGCACTTTCACATTCATCACATCGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26236069 C-TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26236115 CTTATCACATATATACACTTTCACATTCAT-ACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26236161 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26236208 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26236255 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26236302 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
26236353 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
26236404 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26236451 CTTATCACATATATACACT
1 CTTATCACATATATACACT
26236470 CTCTTGGCTG
Statistics
Matches: 377, Mismatches: 16, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
46 84 0.22
47 194 0.51
48 1 0.00
49 11 0.03
50 1 0.00
51 86 0.23
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26236420 original size:98 final size:94
Alignment explanation
Indices: 26236022--26236469 Score: 675
Period size: 93 Copynumber: 4.7 Consensus size: 94
26236012 CCTTTCGGGA
* * * * *
26236022 CTTATCACATTTATGCACTTTCACATTCATCACATCGGCCACTCGGCC-TGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
26236086 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
26236115 CTTATCACATATATACACTTTCACATTCAT-ACGTCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
26236179 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
26236208 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
26236273 TTTCACATTCATCACGTCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
26236302 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATAT
26236367 ACATACACTTTCACATTCATCACATCGGCCATTAGGC
60 --ATACACTTTCACATTCATCACATCGGCCATTAGGC
26236404 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
26236469 T
66 T
26236470 CTCTTGGCTG
Statistics
Matches: 326, Mismatches: 19, Indels: 19
0.90 0.05 0.05
Matches are distributed among these distances:
92 13 0.04
93 99 0.30
94 72 0.22
95 1 0.00
96 9 0.03
98 85 0.26
100 9 0.03
101 1 0.00
102 37 0.11
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:26236420 original size:196 final size:187
Alignment explanation
Indices: 26236022--26236469 Score: 673
Period size: 196 Copynumber: 2.4 Consensus size: 187
26236012 CCTTTCGGGA
* * * * *
26236022 CTTATCACATTTATGCACTTTCACATTCATCACATCGGCCACTCGGCC-TGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
26236086 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATACGTCG
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATACATCG
* *
26236151 GCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 GCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26236208 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
26236273 TTTCACATTCATCACGTCGGCTATTAGGCCTTATTACATATATACATACACTTTCACATTCATCA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTA-T-CACATAT--ATACACTTTCACATTCAT-A
*
26236338 CATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGG
126 CATCGGCCATTAGGCCTTATCAC--ACAT--ATACACTTTCACATTCATCACATCGGCCATTAGG
26236403 C
187 C
26236404 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
26236469 T
66 T
26236470 CTCTTGGCTG
Statistics
Matches: 234, Mismatches: 18, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
186 42 0.18
187 45 0.19
188 1 0.00
189 6 0.03
191 18 0.08
192 22 0.09
194 3 0.01
196 97 0.41
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (187 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATACATCG
GCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26240031 original size:40 final size:40
Alignment explanation
Indices: 26239986--26240220 Score: 330
Period size: 40 Copynumber: 5.9 Consensus size: 40
26239976 CGAATACACG
* * * * *
26239986 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
26240026 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
26240066 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
26240106 TCACTAGCATGAATGCTC-TC-GGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
26240144 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
26240184 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
26240221 TTAGTAACTC
Statistics
Matches: 176, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 35 0.20
39 4 0.02
40 137 0.78
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:26240160 original size:78 final size:80
Alignment explanation
Indices: 26239986--26240220 Score: 330
Period size: 78 Copynumber: 3.0 Consensus size: 80
26239976 CGAATACACG
* * * * * * * * *
26239986 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
* * *
26240051 TTTAGCACGGATATA
66 CTTAGCCCGGATACA
* *
26240066 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTC-TC-GGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
26240129 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
26240144 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
26240209 CTTAGCCCGGAT
66 CTTAGCCCGGAT
26240221 TTAGTAACTC
Statistics
Matches: 137, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
78 70 0.51
79 4 0.03
80 63 0.46
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (80 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
CTTAGCCCGGATACA
Found at i:26240162 original size:118 final size:120
Alignment explanation
Indices: 26239986--26240220 Score: 330
Period size: 118 Copynumber: 2.0 Consensus size: 120
26239976 CGAATACACG
* * *
26239986 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGG
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACACAACACCAGCACGAATGCTCTTCGGGA
* *
26240051 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
66 CTTAGCACGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
* * * * * *
26240106 TCACTAGCATGAATGCTC-TC-GGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACACAACACCAGCACGAATGCTCTTCGGGA
* * *
26240169 CTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
66 CTTAGCACGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
26240221 TTAGTAACTC
Statistics
Matches: 101, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
118 83 0.82
119 2 0.02
120 16 0.16
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (120 bp):
TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACACAACACCAGCACGAATGCTCTTCGGGA
CTTAGCACGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
Found at i:26240245 original size:40 final size:40
Alignment explanation
Indices: 26239999--26240299 Score: 280
Period size: 40 Copynumber: 7.6 Consensus size: 40
26239989 CCAGCATGAT
* * * *
26239999 TGCTCTTCGGGACCTAGCCCGGACATA-ACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AA
** *
26240039 TGCTCTTCGGGGTTTAGCACGGATATA-TCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AA
* * *
26240079 TGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAA
* *
26240119 TGCTC-TC-GGACTTAGCCCGGATACA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAA
* *
26240157 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAA
* * *
26240197 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAA
* *
26240238 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAA
1 TGCTCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAA
*
26240278 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
26240300 CATCATTCAA
Statistics
Matches: 227, Mismatches: 27, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
38 35 0.15
39 7 0.03
40 166 0.73
41 19 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAA
Found at i:26240303 original size:158 final size:157
Alignment explanation
Indices: 26239986--26240304 Score: 367
Period size: 158 Copynumber: 2.0 Consensus size: 157
26239976 CGAATACACG
* * *
26239986 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGG
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACACAACACCAGCACGAATGCTCTTCGGGA
* * *
26240051 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCAT
66 CTTAGCACGGATATATAACTAGCACCAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCAT
* *
26240116 GAATGCTCTCGGACTTAGCCCGGATACA
131 CAAAGCTCTCGGACTTAGCCCGGA-ACA
* * * * * *
26240144 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACACAACACCAGCACGAATGCTCTTCGGGA
* * * * * **
26240209 CTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGATCTTAGTCCGGATATGGTCACTTAG
66 CTTAGCACGGATATA-TAACTAGCACCAATGCTCTTCGGAACTTAGCCCGGATA-CATCAC-TAG
26240273 CA-CAAAGC-CTTCGGGACTTAGCCCGG-ACA
128 CATCAAAGCTC-TC-GGACTTAGCCCGGAACA
26240302 TCA
1 TCA
26240305 TTCAAATAAC
Statistics
Matches: 135, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
158 94 0.70
159 23 0.17
160 18 0.13
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (157 bp):
TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACACAACACCAGCACGAATGCTCTTCGGGA
CTTAGCACGGATATATAACTAGCACCAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCAT
CAAAGCTCTCGGACTTAGCCCGGAACA
Found at i:26240644 original size:29 final size:29
Alignment explanation
Indices: 26240605--26240683 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
26240595 CTTAATAATC
*
26240605 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
26240635 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
26240664 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26240684 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:26242620 original size:37 final size:37
Alignment explanation
Indices: 26242570--26242648 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26242560 TTATTACGAA
* * *
26242570 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
26242607 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26242644 GTCTT
1 GTCTT
26242649 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26242883 original size:47 final size:47
Alignment explanation
Indices: 26242766--26243258 Score: 769
Period size: 47 Copynumber: 10.4 Consensus size: 47
26242756 GCCTTCGGGA
* * * * * * *
26242766 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26242813 C-TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26242859 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26242906 CTTATCACATATATACACTTTCACATTCATCACATCGG-C--TAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26242950 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26242997 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26243044 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26243091 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
26243142 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
26243193 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26243240 CTTATCACATATATACACT
1 CTTATCACATATATACACT
26243259 CTCTGGCTGA
Statistics
Matches: 425, Mismatches: 13, Indels: 16
0.94 0.03 0.04
Matches are distributed among these distances:
44 43 0.10
46 39 0.09
47 243 0.57
49 7 0.02
51 93 0.22
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26243016 original size:138 final size:140
Alignment explanation
Indices: 26242766--26243258 Score: 749
Period size: 138 Copynumber: 3.5 Consensus size: 140
26242756 GCCTTCGGGA
* * * * * * * *
26242766 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCC-TGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCC-TTAGGCCTTATCACATATATACAC
26242830 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
26242895 GGCCATTAGGC
130 GGCCATTAGGC
26242906 CTTATCACATATATACACTTTCACATTCATCACATCGG-C-TAGGCCTTATCACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCTTAGGCCTTATCACATATATACACT
* *
26242969 TTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
*
26243034 GCTATTAGGC
131 GCCATTAGGC
* *
26243044 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGC-CTTAGGCCTTATCAC--ATAT--AT
26243109 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTC
61 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATAT--ATACACTTTCACATTC
26243174 ATCACATCGGCCATTAGGC
122 ATCACATCGGCCATTAGGC
26243193 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCC-TTAGGCCTTATCACATATATACAC
26243258 T
65 T
26243259 CTCTGGCTGA
Statistics
Matches: 323, Mismatches: 17, Indels: 21
0.89 0.05 0.06
Matches are distributed among these distances:
137 5 0.02
138 125 0.39
139 1 0.00
140 33 0.10
141 13 0.04
143 4 0.01
145 49 0.15
147 7 0.02
149 86 0.27
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (140 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCTTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGC
Found at i:26248606 original size:12 final size:12
Alignment explanation
Indices: 26248589--26248616 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
26248579 GGTTCTTCTC
26248589 TTTCTCCTAGGG
1 TTTCTCCTAGGG
26248601 TTTCTCCTAGGG
1 TTTCTCCTAGGG
26248613 TTTC
1 TTTC
26248617 CATGTATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.25, G:0.21, T:0.46
Consensus pattern (12 bp):
TTTCTCCTAGGG
Found at i:26259868 original size:46 final size:46
Alignment explanation
Indices: 26259801--26260010 Score: 201
Period size: 46 Copynumber: 4.5 Consensus size: 46
26259791 GTATGCTAGC
*
26259801 GTAAGACATGTCTGGGACATGCATCAGCCA-CAAAATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATC-GCCATCAAAACGAGAGCCAGT
* * ** *
26259847 GTAAGACATGTCTGGTACATGCATCGGCATTGAAACGAGAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGCCATCAAAACGAGAGCCAGT
***
26259893 GTAAGACATGTCTGGGACATGCATCGGCC-TCGCAATATTTA-AGCCAGT
1 GTAAGACATGTCTGGGACATGCATC-GCCAT--CAA-AACGAGAGCCAGT
* * * ** * * *
26259941 GTAAGACATGTCTAGGACATTCATCGGCATTGAGACAAGAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGCCATCAAAACGAGAGCCAGT
26259987 GTAAGACATGTCTGGGACATGCAT
1 GTAAGACATGTCTGGGACATGCAT
26260011 TTGCCTCGCG
Statistics
Matches: 131, Mismatches: 26, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
45 4 0.03
46 90 0.69
47 4 0.03
48 31 0.24
49 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.23
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGCATCGCCATCAAAACGAGAGCCAGT
Found at i:26259971 original size:94 final size:95
Alignment explanation
Indices: 26259795--26260024 Score: 317
Period size: 94 Copynumber: 2.5 Consensus size: 95
26259785 TGATATGTAT
* * *
26259795 GCTAGCGTAAGACATGTCTGGGACATGCATCAG-C-CACAA-AATGAGAGCCAGTGTAAGACATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCAATATTGAGAGCCAGTGTAAGACATG
*
26259857 TCTGGTACATGCATCGGCATTGAAACGAGA
66 TCTGGTACATGCATCGGCATTGAAACAAGA
* *
26259887 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCAATATTTA-AGCCAGTGTAAGACATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCAATATTGAGAGCCAGTGTAAGACATG
* *
26259951 TCTAGG-ACATTCATCGGCATTGAGACAAGA
66 TCT-GGTACATGCATCGGCATTGAAACAAGA
** *
26259981 GCTAGTGTAAGACATGTCTGGGACATGCATTTGCCTCGCGATAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCAATAT
26260025 ACAAGCTAGT
Statistics
Matches: 123, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
92 31 0.25
93 1 0.01
94 86 0.70
95 5 0.04
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (95 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCAATATTGAGAGCCAGTGTAAGACATG
TCTGGTACATGCATCGGCATTGAAACAAGA
Found at i:26264716 original size:18 final size:18
Alignment explanation
Indices: 26264681--26264716 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
26264671 GAGATGGTTA
*
26264681 GAGTTGATAACAGGCTAT
1 GAGTTGATAACAGACTAT
*
26264699 GAGTTGATAATAGACTAT
1 GAGTTGATAACAGACTAT
26264717 CACCCAGGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (18 bp):
GAGTTGATAACAGACTAT
Found at i:26267693 original size:94 final size:94
Alignment explanation
Indices: 26267560--26267732 Score: 240
Period size: 94 Copynumber: 1.8 Consensus size: 94
26267550 GCGACAGAAT
* **
26267560 GAGAGCCAGTGTAAGACATGTCTGGCACATGCATCGGCCTCGCAATATTTAAGCCAGTGTAAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGCACATGCATCGGCCTCACAATATACAAGCCAGTGTAAGAC
*
26267625 ATGTTTGGGACATGCATCGACATTGAGAC
66 ATGTCTGGGACATGCATCGACATTGAGAC
* * ** *
26267654 GAGAGCTAGTGTAAGACATGTCTAGG-ATATGCATCGGCCTCATGATATACAAGCTAGTGTAAGA
1 GAGAGCCAGTGTAAGACATGTCT-GGCACATGCATCGGCCTCACAATATACAAGCCAGTGTAAGA
*
26267718 CCTGTCTGGGACATG
65 CATGTCTGGGACATG
26267733 GCGTCAGCTT
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
94 66 0.97
95 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (94 bp):
GAGAGCCAGTGTAAGACATGTCTGGCACATGCATCGGCCTCACAATATACAAGCCAGTGTAAGAC
ATGTCTGGGACATGCATCGACATTGAGAC
Found at i:26283496 original size:12 final size:12
Alignment explanation
Indices: 26283479--26283508 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26283469 AGAATTGGGC
26283479 ACACGGGCAGAG
1 ACACGGGCAGAG
*
26283491 ACACGGGTAGAG
1 ACACGGGCAGAG
26283503 ACACGG
1 ACACGG
26283509 CCGTGTGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.40, T:0.03
Consensus pattern (12 bp):
ACACGGGCAGAG
Found at i:26285517 original size:96 final size:96
Alignment explanation
Indices: 26285351--26285671 Score: 339
Period size: 96 Copynumber: 3.4 Consensus size: 96
26285341 AAGGGTGAAT
* * * * * *
26285351 TGCCGATGCCAT-TTCCAAACATGGTCTTACACTGGCTCACATGT-CA-AGGCTGATGCTATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCAT-TACATTGG-TGATGCCATGTC
*** *
26285413 CCAAACATGGTCTTACACTAGCACTTGTCTCAA
64 CCAAACATGGTCTTACACTAGCACACATATCAA
* *
26285446 TGCCGATGCCATGTCTCAGACATGGTCTTACATTGACTCTC-TTA-ATATGGTTGATGCCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATTACAT-TGG-TGATGCCATGTC
* *
26285509 CCAGACATGGTCTTACACTAGCGCACATATCAA
64 CCAAACATGGTCTTACACTAGCACACATATCAA
* * *
26285542 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTACATTGGCGATGCCATGTTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATTACATTGGTGATGCCATGTCCC
* * * * **
26285607 AAACATGGTCTCACACTTGCTCTCATAT-TG
66 AAACATGGTCTTACACTAGCACACATATCAA
*
26285637 TGGCCGATGCCATGTACCAGACATGGTCTTACACT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACT
26285672 AGCACACATA
Statistics
Matches: 191, Mismatches: 28, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
94 2 0.01
95 14 0.07
96 167 0.87
97 6 0.03
98 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATTACATTGGTGATGCCATGTCCC
AAACATGGTCTTACACTAGCACACATATCAA
Found at i:26285630 original size:144 final size:144
Alignment explanation
Indices: 26285352--26285684 Score: 395
Period size: 144 Copynumber: 2.3 Consensus size: 144
26285342 AGGGTGAATT
* * * * * * *
26285352 GCCGATGCCAT-TTCCAAACATGGTCTTACACTGGCTCACATGTCAAGGCTGATGCTATGTCCCA
1 GCCGATGCCATGTACCAGACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCA
** * *
26285416 AACATGGTCTTACACTAGCACTTGTCTCAATGCCGATGCCATGTCTCAGACATGGTCTTACATTG
66 AACATGGTCTTACACTAGCACTCATCTCAATGCCGATGCCATGTCTCAAACATGGTCTCACATTG
*
26285481 ACTCTCTTAATATG
131 ACTCTCATAATATG
** * * *
26285495 GTTGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCA
1 GCCGATGCCATGTACCAGACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCA
* * * * *
26285560 GACATGGTCTTACACTGGCTCTCAT-TACATTGGCGATGCCATGT-TCCAAACATGGTCTCACAC
66 AACATGGTCTTACACTAGCACTCATCT-CAATGCCGATGCCATGTCT-CAAACATGGTCTCACA-
* *
26285623 TTG-CTCTCATATTGTG
128 TTGACTCTCATAATATG
26285639 GCCGATGCCATGTACCAGACATGGTCTTACACTAGCACACATATCA
1 GCCGATGCCATGTACCAGACATGGTCTTACACTAGCACACATATCA
26285685 TCTAAATGTC
Statistics
Matches: 160, Mismatches: 26, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
143 11 0.07
144 146 0.91
145 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (144 bp):
GCCGATGCCATGTACCAGACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCA
AACATGGTCTTACACTAGCACTCATCTCAATGCCGATGCCATGTCTCAAACATGGTCTCACATTG
ACTCTCATAATATG
Found at i:26285682 original size:48 final size:48
Alignment explanation
Indices: 26285352--26285674 Score: 271
Period size: 48 Copynumber: 6.8 Consensus size: 48
26285342 AGGGTGAATT
* * * * * * *
26285352 GCCGATGCCAT-TTCCAAACATGGTCTTACACTGGCTCACATGTCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATTATG
* * * * ** * *
26285399 GCTGATGCTATGTCCCAAACATGGTCTTACACTAGCACTTGTCTCAAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-TATG
* * * *
26285447 GCCGATGCCATGTCTCAGACATGGTCTTACA-TTGACTCTCTTAATATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATATTATG
** * * *
26285495 GTTGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-TATG
* *
26285543 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TACATTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-TA-TG
* * * * *
26285592 G-CGATGCCATGTTCCAAACATGGTCTCACACTTGCTCTCATATTGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATTATG
*
26285639 GCCGATGCCATGTACCAGACATGGTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
26285675 ACACATATCA
Statistics
Matches: 218, Mismatches: 48, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
47 18 0.08
48 193 0.89
49 7 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATTATG
Found at i:26287104 original size:15 final size:15
Alignment explanation
Indices: 26287080--26287110 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26287070 GGTTAAAAAA
*
26287080 AACATGTTATAATAT
1 AACATATTATAATAT
26287095 AACATATTATAATAT
1 AACATATTATAATAT
26287110 A
1 A
26287111 GTTAAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (15 bp):
AACATATTATAATAT
Found at i:26289471 original size:18 final size:19
Alignment explanation
Indices: 26289436--26289479 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
26289426 TGCATGGCAA
* *
26289436 TATAAATTCATTAGATATT
1 TATAAATTCATTAAATATG
26289455 TATAAATT-ATTAAATATG
1 TATAAATTCATTAAATATG
26289473 TATAAAT
1 TATAAAT
26289480 AAGTTTAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (19 bp):
TATAAATTCATTAAATATG
Found at i:26292232 original size:19 final size:20
Alignment explanation
Indices: 26292208--26292245 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
26292198 GGTACCACCA
26292208 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
26292227 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
26292246 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:26292586 original size:93 final size:93
Alignment explanation
Indices: 26292474--26292645 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
26292464 CGCCCCTAAG
* * * *
26292474 CGAACTCGGACTCAACTCAAAGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAAAGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
26292539 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * * *
26292567 CGAACTCAGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCAGACTCAACTCAAAGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
26292632 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
26292646 TCCACCATCC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAAAGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:26292634 original size:46 final size:46
Alignment explanation
Indices: 26292470--26292639 Score: 148
Period size: 46 Copynumber: 3.7 Consensus size: 46
26292460 AACCCGCCCC
* * * * * *
26292470 TAAGCGAACTCGGACTCAACTCAAAGAGCTCGGGCGTTCGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
** * * *
26292516 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGCGAACTCGGACTCAACTCAACGAGTTC--A-GAC-ATTTGCATCCA
* *
26292564 TCA-CGAACTCAGACTCAACTCAACGAGTTCAGACATTTGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
* *
26292609 TAAGTGAACTTGGACTCAACTCAACGAGTTC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTC
26292640 GGATGCTCCA
Statistics
Matches: 97, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 51 0.53
47 25 0.26
48 2 0.02
49 3 0.03
50 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
Found at i:26308426 original size:48 final size:48
Alignment explanation
Indices: 26308368--26308635 Score: 263
Period size: 48 Copynumber: 5.6 Consensus size: 48
26308358 GGGTGACTTA
* * * * *
26308368 CCGATTCCATGTTCCAAACATGGTCTTACACTGGTTCACATGTCGAGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGG
* *
26308416 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCTTAAT-GTGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-ATCGAGG
* * * * * * * * *
26308464 TCAATGCCATGGCCCAGACATGGTCTTACACTAGCGCACATATCAATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGG
* *
26308512 CCGATGCCATGCCCCAAACATGGTCTTACACTGGCTCTCAT-TAC-ATTG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAT-CGA-GG
* * * * **
26308560 CCGATGTCATGTTCCAAACATGATCTTACTCTGGCTCTCATATCTTGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGG
*
26308608 CCGATGCCATGTCCCAAACATGGACTTA
1 CCGATGCCATGTCCCAAACATGGTCTTA
26308636 ACTAACACAC
Statistics
Matches: 178, Mismatches: 36, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
47 4 0.02
48 172 0.97
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGG
Found at i:26308581 original size:96 final size:95
Alignment explanation
Indices: 26308374--26308635 Score: 312
Period size: 96 Copynumber: 2.7 Consensus size: 95
26308364 CTTACCGATT
* * *
26308374 CCATGTTCCAAACATGGTCTTACACTGGTTCACATGTCGAGGCCGATGCCATGTCCCAAACATGG
1 CCATGTTCCAAACATGGTCTTACACTGGCTCACATATC-ATGCCGATGCCATGTCCCAAACATGG
*
26308439 TCTTACACTGGCTCTCTTAATGTGGTCAATG
65 TCTTACACTGGCTCTCTTAATGTGGCCAATG
** * * * *
26308470 CCATGGCCCAGACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGCCCCAAACATGG
1 CCATGTTCCAAACATGGTCTTACACTGGCTCACATATC-ATGCCGATGCCATGTCCCAAACATGG
*
26308535 TCTTACACTGGCTCTCATTACAT-T-GCCGATG
65 TCTTACACTGGCTCTC-TTA-ATGTGGCCAATG
* * * * *
26308566 TCATGTTCCAAACATGATCTTACTCTGGCTCTCATATCTTGGCCGATGCCATGTCCCAAACATGG
1 CCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAT-GCCGATGCCATGTCCCAAACATGG
*
26308631 ACTTA
65 TCTTA
26308636 ACTAACACAC
Statistics
Matches: 139, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
95 1 0.01
96 132 0.95
97 4 0.03
98 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (95 bp):
CCATGTTCCAAACATGGTCTTACACTGGCTCACATATCATGCCGATGCCATGTCCCAAACATGGT
CTTACACTGGCTCTCTTAATGTGGCCAATG
Found at i:26308629 original size:144 final size:143
Alignment explanation
Indices: 26308381--26308651 Score: 341
Period size: 144 Copynumber: 1.9 Consensus size: 143
26308371 ATTCCATGTT
* *
26308381 CCAAACATGGTCTTACACTGGTTCACATGTCGAGGCCGATGCCATGTCCCAAACATGGTCTTACA
1 CCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAAACATGATCTTACA
* * * * * *
26308446 CTGGCTCTCTTAATGTGGTCAATGCCATGGCCCAGACATGGTCTTACACTAGCGCACATATCAAT
66 CTGGCTCTCATAATGTGGCCAATGCCATGGCCCAAACATGGACTTA-ACTAACACACATATCAAT
26308511 GCCGATGCCATGCC
130 GCCGATGCCATGCC
* * * *
26308525 CCAAACATGGTCTTACACTGGCTCTCAT-TAC-ATTGCCGATGTCATGTTCCAAACATGATCTTA
1 CCAAACATGGTCTTACACTGGCTCACATGT-CGA-GGCCGATGCCATGTCCCAAACATGATCTTA
* * * *
26308588 CTCTGGCTCTCAT-ATCTTGGCCGATGCCATGTCCCAAACATGGACTTAACTAACACACATATCA
64 CACTGGCTCTCATAAT-GTGGCCAATGCCATGGCCCAAACATGGACTTAACTAACACACATATCA
26308652 CCCAAATGTC
Statistics
Matches: 108, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
143 18 0.17
144 90 0.83
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (143 bp):
CCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAAACATGATCTTACA
CTGGCTCTCATAATGTGGCCAATGCCATGGCCCAAACATGGACTTAACTAACACACATATCAATG
CCGATGCCATGCC
Found at i:26312588 original size:13 final size:13
Alignment explanation
Indices: 26312570--26312597 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26312560 CTTTATTTTA
26312570 TTATTTATCATCT
1 TTATTTATCATCT
26312583 TTATTTATCATCT
1 TTATTTATCATCT
26312596 TT
1 TT
26312598 TCAAATTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.64
Consensus pattern (13 bp):
TTATTTATCATCT
Found at i:26314493 original size:21 final size:21
Alignment explanation
Indices: 26314467--26314518 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
26314457 TATACGAGTA
26314467 AATTTAACATCAATTTAATAC
1 AATTTAACATCAATTTAATAC
* *
26314488 AATTTATAC-TCAATTTAGTCC
1 AATTTA-ACATCAATTTAATAC
26314509 AA-TTAACATC
1 AATTTAACATC
26314519 TTAGGCAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 2 0.07
20 5 0.19
21 18 0.67
22 2 0.07
ACGTcount: A:0.42, C:0.17, G:0.02, T:0.38
Consensus pattern (21 bp):
AATTTAACATCAATTTAATAC
Found at i:26321481 original size:24 final size:24
Alignment explanation
Indices: 26321353--26321490 Score: 83
Period size: 23 Copynumber: 5.9 Consensus size: 24
26321343 ATAACTTTTA
* *
26321353 ATCAGGAAACTCACAAAGAGCC-T
1 ATCAGGAAGCTCACTAAGAGCCAT
*
26321376 ATCAGGAAGCTCACAAAGAGCCATGT
1 ATCAGGAAGCTCACTAAGAGCCA--T
* ** *
26321402 AACAGG-AGCTC-CGGATAG-CAT
1 ATCAGGAAGCTCACTAAGAGCCAT
* * *
26321423 AACAGGAAGTTCA--AGTGAGCCAT
1 ATCAGGAAGCTCACTA-AGAGCCAT
*
26321446 GTCAGGAAGCTCA-TAAGAGCCTAT
1 ATCAGGAAGCTCACTAAGAGCC-AT
*
26321470 ATCAGGATGCTCACTAAGAGC
1 ATCAGGAAGCTCACTAAGAGC
26321491 TACGTTTGTG
Statistics
Matches: 90, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
21 7 0.08
22 6 0.07
23 41 0.46
24 18 0.20
25 12 0.13
26 6 0.07
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (24 bp):
ATCAGGAAGCTCACTAAGAGCCAT
Found at i:26322020 original size:45 final size:45
Alignment explanation
Indices: 26321956--26322047 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 45
26321946 AATTTGGTCT
*
26321956 ATCTAGATCTATACGTGTAAATTTAACATCAATTTAATACAATTC
1 ATCTAGATCTATACATGTAAATTTAACATCAATTTAATACAATTC
26322001 ATCTAGATCTATACATGTAAATTTAACATCAATTTAATACAATTC
1 ATCTAGATCTATACATGTAAATTTAACATCAATTTAATACAATTC
26322046 AT
1 AT
26322048 ACTCAATTCA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.38
Consensus pattern (45 bp):
ATCTAGATCTATACATGTAAATTTAACATCAATTTAATACAATTC
Found at i:26322615 original size:28 final size:30
Alignment explanation
Indices: 26322583--26322639 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
26322573 TTTTATCATT
26322583 TATCAT-CTTTT-ATTATTTCACTTTCCAA
1 TATCATCCTTTTCATTATTTCACTTTCCAA
* *
26322611 TATCATCCTTTTCATTATTTTATTTTCCA
1 TATCATCCTTTTCATTATTTCACTTTCCA
26322640 TGGATGAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 6 0.24
29 5 0.20
30 14 0.56
ACGTcount: A:0.23, C:0.21, G:0.00, T:0.56
Consensus pattern (30 bp):
TATCATCCTTTTCATTATTTCACTTTCCAA
Found at i:26328570 original size:21 final size:20
Alignment explanation
Indices: 26328537--26328575 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
26328527 ATTTTCACGA
26328537 TTTTAAATATAAAATATTTG
1 TTTTAAATATAAAATATTTG
*
26328557 TTTTATATCATAAAATATT
1 TTTTAAAT-ATAAAATATT
26328576 AAAATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (20 bp):
TTTTAAATATAAAATATTTG
Found at i:26332558 original size:26 final size:26
Alignment explanation
Indices: 26332529--26332582 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
26332519 TACTGATATT
26332529 ATCAAACATTATAAAAGGAAAAAATA
1 ATCAAACATTATAAAAGGAAAAAATA
*
26332555 ATCAAACATTATAAAAGGGAAAAATA
1 ATCAAACATTATAAAAGGAAAAAATA
26332581 AT
1 AT
26332583 GTAAAAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.63, C:0.07, G:0.09, T:0.20
Consensus pattern (26 bp):
ATCAAACATTATAAAAGGAAAAAATA
Found at i:26334182 original size:7 final size:7
Alignment explanation
Indices: 26334170--26334195 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26334160 GTTAAATTCA
26334170 CCATTAT
1 CCATTAT
26334177 CCATTAT
1 CCATTAT
26334184 CCATTAT
1 CCATTAT
26334191 CCATT
1 CCATT
26334196 TCCTCTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.31, G:0.00, T:0.42
Consensus pattern (7 bp):
CCATTAT
Found at i:26335381 original size:11 final size:11
Alignment explanation
Indices: 26335365--26335389 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26335355 ATGTGTATAT
26335365 TATATAGAATA
1 TATATAGAATA
26335376 TATATAGAATA
1 TATATAGAATA
26335387 TAT
1 TAT
26335390 GAGCTTCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (11 bp):
TATATAGAATA
Found at i:26336203 original size:32 final size:30
Alignment explanation
Indices: 26336134--26336240 Score: 103
Period size: 30 Copynumber: 3.6 Consensus size: 30
26336124 TTAACCATTT
* *
26336134 TATAGTTAATGTTAACATA--TTTTCATAG
1 TATAATTAATGTAAACATACTTTTTCATAG
* *
26336162 TATAGTTAATGTAAACATACACTTTTTCATAA
1 TATAATTAATGTAAACAT--ACTTTTTCATAG
* *
26336194 TATAATTAATGTATAA-ATGCTTTCTCATAG
1 TATAATTAATGTA-AACATACTTTTTCATAG
*
26336224 TTTAATTAATGTAAACA
1 TATAATTAATGTAAACA
26336241 CGATTTCTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
28 17 0.26
29 2 0.03
30 23 0.35
32 22 0.33
33 2 0.03
ACGTcount: A:0.39, C:0.09, G:0.08, T:0.43
Consensus pattern (30 bp):
TATAATTAATGTAAACATACTTTTTCATAG
Found at i:26336248 original size:30 final size:30
Alignment explanation
Indices: 26336134--26336262 Score: 97
Period size: 30 Copynumber: 4.3 Consensus size: 30
26336124 TTAACCATTT
* * *
26336134 TATAGTTAATGTTAACA-TATTT-TCATAG
1 TATAATTAATGTAAACACGATTTCTCATAG
* * *
26336162 TATAGTTAATGTAAACATAC-ACTTTTTCATAA
1 TATAATTAATGTAAAC--ACGA-TTTCTCATAG
* *
26336194 TATAATTAATGTATAA-ATGCTTTCTCATAG
1 TATAATTAATGTA-AACACGATTTCTCATAG
*
26336224 TTTAATTAATGTAAACACGATTTCTCATTA-
1 TATAATTAATGTAAACACGATTTCTCA-TAG
26336254 TATAATTAA
1 TATAATTAA
26336263 GCTAGCAGTT
Statistics
Matches: 81, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
28 15 0.19
29 2 0.02
30 40 0.49
31 5 0.06
32 17 0.21
33 2 0.02
ACGTcount: A:0.39, C:0.10, G:0.08, T:0.43
Consensus pattern (30 bp):
TATAATTAATGTAAACACGATTTCTCATAG
Found at i:26339466 original size:24 final size:23
Alignment explanation
Indices: 26339425--26339471 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
26339415 TCCTTTGCTT
26339425 GTTTATTTCCTGTATTTAGTTTTA
1 GTTTATTTCCTGTATTTA-TTTTA
** *
26339449 GTTTATTTTTTGTTTTTATTTTA
1 GTTTATTTCCTGTATTTATTTTA
26339472 TTTTGGGTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.15, C:0.04, G:0.11, T:0.70
Consensus pattern (23 bp):
GTTTATTTCCTGTATTTATTTTA
Found at i:26340699 original size:17 final size:17
Alignment explanation
Indices: 26340677--26340713 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
26340667 TTTGTTTAGC
* *
26340677 TTTCTTTCTTTCTTTCT
1 TTTCTTTATTTATTTCT
26340694 TTTCTTTATTTATTTCT
1 TTTCTTTATTTATTTCT
26340711 TTT
1 TTT
26340714 TATTCCCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTCTTTATTTATTTCT
Found at i:26345150 original size:41 final size:41
Alignment explanation
Indices: 26345093--26345176 Score: 150
Period size: 41 Copynumber: 2.0 Consensus size: 41
26345083 AATTAGAAAT
26345093 TAGCCAAACAACTTTGCTATTAAAACTGTCCGCCCTATGGC
1 TAGCCAAACAACTTTGCTATTAAAACTGTCCGCCCTATGGC
* *
26345134 TAGCCTAACAACTTTGCTGTTAAAACTGTCCGCCCTATGGC
1 TAGCCAAACAACTTTGCTATTAAAACTGTCCGCCCTATGGC
26345175 TA
1 TA
26345177 TTAATAGCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (41 bp):
TAGCCAAACAACTTTGCTATTAAAACTGTCCGCCCTATGGC
Found at i:26346150 original size:20 final size:20
Alignment explanation
Indices: 26346125--26346165 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
26346115 TAAGCATGAT
26346125 AAAGTAAATTGAATTGATTA
1 AAAGTAAATTGAATTGATTA
*
26346145 AAAGTAGATTGAATTGATTA
1 AAAGTAAATTGAATTGATTA
26346165 A
1 A
26346166 TATACTTATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.17, T:0.34
Consensus pattern (20 bp):
AAAGTAAATTGAATTGATTA
Found at i:26347304 original size:10 final size:10
Alignment explanation
Indices: 26347289--26347316 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
26347279 GATTGACCAC
26347289 ATGCTTGATA
1 ATGCTTGATA
26347299 ATGCTTGATA
1 ATGCTTGATA
26347309 ATGCTTGA
1 ATGCTTGA
26347317 AAGATGCTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (10 bp):
ATGCTTGATA
Found at i:26358578 original size:30 final size:30
Alignment explanation
Indices: 26358542--26358601 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
26358532 ACTTAACAAC
26358542 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
* *
26358572 CAAATGTCTTTAAAATAATAACGAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
26358602 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.55, C:0.12, G:0.05, T:0.28
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:26358659 original size:22 final size:22
Alignment explanation
Indices: 26358634--26358676 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
26358624 TATCCAAACA
26358634 ATAATAACAAAATAGTAGCAAC
1 ATAATAACAAAATAGTAGCAAC
** *
26358656 ATAATAGTAAAATGGTAGCAA
1 ATAATAACAAAATAGTAGCAA
26358677 AATAGAGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAATAACAAAATAGTAGCAAC
Found at i:26359272 original size:20 final size:20
Alignment explanation
Indices: 26359247--26359287 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
26359237 GTGAAAACAT
26359247 TGATTTCATTTTAACTAGTA
1 TGATTTCATTTTAACTAGTA
26359267 TGATTTCATTTTAACTAGTA
1 TGATTTCATTTTAACTAGTA
26359287 T
1 T
26359288 ATGTAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.51
Consensus pattern (20 bp):
TGATTTCATTTTAACTAGTA
Found at i:26365672 original size:28 final size:29
Alignment explanation
Indices: 26365607--26365705 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
26365597 CATGAGATTG
* *
26365607 GCACTAAGTGTGCG-GGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGGTTC-GATTATATA
26365636 GCACTAAGTGTGCGAGGTT-GATTATATA
1 GCACTAAGTGTGCGAGGTTCGATTATATA
*
26365664 GCACTAAGTGTGCGA-GTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGGTTCGATTATAT-A
26365692 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
26365706 GGCTTATTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
27 4 0.06
28 42 0.66
29 14 0.22
30 4 0.06
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGGTTCGATTATATA
Found at i:26371379 original size:49 final size:49
Alignment explanation
Indices: 26371259--26371392 Score: 162
Period size: 49 Copynumber: 2.7 Consensus size: 49
26371249 TAGCTAGTAC
* * *
26371259 ATCAAAGTCAATGCCATATCCCAGACAGGTCTTACACTGACTTTCATAT
1 ATCAAAGTCGATGCCATATCCCAGACAGGTCTTACACTGACTCTCATCT
* * ** *
26371308 ATCGAGGT-GAGTGTTATATCCCAGATAGGTCTTACACTGACTCTCATCT
1 ATCAAAGTCGA-TGCCATATCCCAGACAGGTCTTACACTGACTCTCATCT
* *
26371357 ATCAATGTCGATGCCATGTCCCAGACAGGTCTTACA
1 ATCAAAGTCGATGCCATATCCCAGACAGGTCTTACA
26371393 TTAACACACA
Statistics
Matches: 69, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
48 1 0.01
49 66 0.96
50 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (49 bp):
ATCAAAGTCGATGCCATATCCCAGACAGGTCTTACACTGACTCTCATCT
Found at i:26371527 original size:94 final size:92
Alignment explanation
Indices: 26371415--26371629 Score: 263
Period size: 94 Copynumber: 2.3 Consensus size: 92
26371405 AAGCTGACGC
* *
26371415 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCAAGTCCTAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGCATATCTCGAGGCCGATGCAAGTCCTAGACATGTC
* *
26371480 TTGCACTAGCTCTCTTCTCAATGT-CGATG
66 TTACACTAGCTCTC--CT-AATGTACAATG
* * * *
26371509 CATGTCCCAGACATGTCTTACACT-GACTTGCATCTCTCGAGGCCGATTCATGTCCTAGATATGT
1 CATGTCCCAGACATGTCTTACACTAG-CTTGCATATCTCGAGGCCGATGCAAGTCCTAGACATGT
* *
26371573 CTTACACTGGCTCTCGTAATGTAGCCAATG
65 CTTACACTAGCTCTCCTAATGTA--CAATG
*
26371603 CATGTCCCACACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
26371630 ACACATATCA
Statistics
Matches: 105, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
91 5 0.05
92 1 0.01
93 1 0.01
94 97 0.92
95 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.30
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGCATATCTCGAGGCCGATGCAAGTCCTAGACATGTC
TTACACTAGCTCTCCTAATGTACAATG
Found at i:26371573 original size:48 final size:48
Alignment explanation
Indices: 26371415--26371629 Score: 178
Period size: 46 Copynumber: 4.6 Consensus size: 48
26371405 AAGCTGACGC
* * *
26371415 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGCATCTCTCGAGGCCGATG
* * * * * *
26371463 CAAGTCCTAGACATGTCTTGCACTAGC-T-C-TCTTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGCATC-TCTCGAGGCCGATG
*
26371509 CATGTCCCAGACATGTCTTACACT-GACTTGCATCTCTCGAGGCCGATT
1 CATGTCCCAGACATGTCTTACACTAG-CTTGCATCTCTCGAGGCCGATG
* * * * *
26371557 CATGTCCTAGATATGTCTTACACTGGC-T-C-TCGTAAT-GTA-GCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGCATC-T-CTCG-AGGCCGATG
*
26371603 CATGTCCCACACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
26371630 ACACATATCA
Statistics
Matches: 133, Mismatches: 25, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
45 4 0.03
46 64 0.48
47 5 0.04
48 57 0.43
49 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.30
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGCATCTCTCGAGGCCGATG
Found at i:26377701 original size:3 final size:3
Alignment explanation
Indices: 26377693--26377731 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
26377683 TTTAAACTTA
26377693 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26377732 TCTTTACTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:26377997 original size:19 final size:19
Alignment explanation
Indices: 26377975--26378060 Score: 75
Period size: 20 Copynumber: 4.4 Consensus size: 19
26377965 TTATAAAAAC
26377975 TAAAAATAAATAAAATTTA
1 TAAAAATAAATAAAATTTA
* *
26377994 TAAAAAT-ATTAAATTTTAA
1 TAAAAATAAATAAAATTT-A
* **
26378013 TAAAATTATTTAAAATTTA
1 TAAAAATAAATAAAATTTA
* *
26378032 TTAAAAATAGAAAAAAAATTA
1 -TAAAAATA-AATAAAATTTA
26378053 TAAAAATA
1 TAAAAATA
26378061 GTAAAAAATT
Statistics
Matches: 53, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
18 8 0.15
19 15 0.28
20 23 0.43
21 7 0.13
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (19 bp):
TAAAAATAAATAAAATTTA
Found at i:26378048 original size:21 final size:20
Alignment explanation
Indices: 26378024--26378070 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
26378014 AAAATTATTT
26378024 AAAATTTATTAAAAATAGAAA
1 AAAATTTA-TAAAAATAGAAA
* *
26378045 AAAAATTATAAAAATAGTAA
1 AAAATTTATAAAAATAGAAA
26378065 AAAATT
1 AAAATT
26378071 AAAAATTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (20 bp):
AAAATTTATAAAAATAGAAA
Found at i:26378349 original size:10 final size:10
Alignment explanation
Indices: 26378293--26378480 Score: 72
Period size: 10 Copynumber: 19.2 Consensus size: 10
26378283 TTTTGGTACG
26378293 ATAA-TTTTT
1 ATAATTTTTT
26378302 ATAATTTTTT
1 ATAATTTTTT
**
26378312 -TAAGAATTTT
1 ATAA-TTTTTT
26378322 AT-ATTTCTTT
1 ATAATTT-TTT
*
26378332 ATATTTTTTT
1 ATAATTTTTT
26378342 ATAATTTTCTT
1 ATAATTTT-TT
* * *
26378353 ATGA--CTTG
1 ATAATTTTTT
**
26378361 ATAAAATTTT
1 ATAATTTTTT
26378371 ATAATTTTTT
1 ATAATTTTTT
* * * *
26378381 TTCTATATGTCT
1 AT-AAT-TTTTT
*
26378393 AT-ATATTTT
1 ATAATTTTTT
26378402 ATAATTTTTT
1 ATAATTTTTT
*
26378412 ACAA-TTTTT
1 ATAATTTTTT
**
26378421 ATAAAGTTTT
1 ATAATTTTTT
*
26378431 ACAATATTTTT
1 ATAAT-TTTTT
**
26378442 ACGA-TTTTT
1 ATAATTTTTT
26378451 ATAA-TTTTT
1 ATAATTTTTT
26378460 ATAATTTTTT
1 ATAATTTTTT
*
26378470 CT-ATTTTTT
1 ATAATTTTTT
26378479 AT
1 AT
26378481 TTTTTATTAA
Statistics
Matches: 131, Mismatches: 34, Indels: 28
0.68 0.18 0.15
Matches are distributed among these distances:
8 4 0.03
9 45 0.34
10 60 0.46
11 18 0.14
12 4 0.03
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:26378420 original size:19 final size:19
Alignment explanation
Indices: 26378398--26378486 Score: 80
Period size: 19 Copynumber: 4.8 Consensus size: 19
26378388 TGTCTATATA
26378398 TTTTATAATTTTTTACAAT
1 TTTTATAATTTTTTACAAT
**
26378417 TTTTATAAAGTTTTACAAT
1 TTTTATAATTTTTTACAAT
*
26378436 ATTTT-TACGA-TTTTTATAAT
1 -TTTTATA--ATTTTTTACAAT
*
26378456 TTTTATAATTTTTT-CTAT
1 TTTTATAATTTTTTACAAT
26378474 TTTT-T-ATTTTTTA
1 TTTTATAATTTTTTA
26378487 TTAAAATTTA
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
16 7 0.12
17 1 0.02
18 7 0.12
19 28 0.48
20 14 0.24
21 1 0.02
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTTATAATTTTTTACAAT
Found at i:26378443 original size:30 final size:29
Alignment explanation
Indices: 26378398--26378477 Score: 92
Period size: 29 Copynumber: 2.8 Consensus size: 29
26378388 TGTCTATATA
*
26378398 TTTTATAATTTTTTACAATTTTTATAAAG
1 TTTTACAATTTTTTACAATTTTTATAAAG
* *
26378427 TTTTACAATATTTTTACGATTTTTAT-AAT
1 TTTTACAAT-TTTTTACAATTTTTATAAAG
* *
26378456 TTTTATAATTTTTT-CTATTTTT
1 TTTTACAATTTTTTACAATTTTT
26378478 TATTTTTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
27 7 0.16
28 5 0.11
29 18 0.40
30 15 0.33
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.64
Consensus pattern (29 bp):
TTTTACAATTTTTTACAATTTTTATAAAG
Found at i:26378506 original size:10 final size:9
Alignment explanation
Indices: 26378398--26378468 Score: 63
Period size: 9 Copynumber: 7.4 Consensus size: 9
26378388 TGTCTATATA
26378398 TTTTATAATT
1 TTTTATAA-T
*
26378408 TTTTACAAT
1 TTTTATAAT
*
26378417 TTTTATAAAG
1 TTTTAT-AAT
*
26378427 TTTTACAAT
1 TTTTATAAT
26378436 ATTTT-TACGAT
1 -TTTTATA--AT
26378447 TTTTATAAT
1 TTTTATAAT
26378456 TTTTATAAT
1 TTTTATAAT
26378465 TTTT
1 TTTT
26378469 TCTATTTTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
9 24 0.48
10 22 0.44
11 4 0.08
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (9 bp):
TTTTATAAT
Found at i:26380534 original size:38 final size:39
Alignment explanation
Indices: 26380483--26380563 Score: 128
Period size: 38 Copynumber: 2.1 Consensus size: 39
26380473 TTATGTGTTT
* *
26380483 GATCTTCTCAATTTTACATGTT-GTTGGTTATATAAGTC
1 GATCTTCTCAATTTTACATGTTCGTTGATTATACAAGTC
*
26380521 GATCTTCTCAATTTTACTTGTTCGTTGATTATACAAGTC
1 GATCTTCTCAATTTTACATGTTCGTTGATTATACAAGTC
26380560 GATC
1 GATC
26380564 CCTAACAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
38 21 0.54
39 18 0.46
ACGTcount: A:0.23, C:0.16, G:0.15, T:0.46
Consensus pattern (39 bp):
GATCTTCTCAATTTTACATGTTCGTTGATTATACAAGTC
Found at i:26385023 original size:23 final size:23
Alignment explanation
Indices: 26384997--26385040 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
26384987 ATTGGTTTGG
*
26384997 TTTGAGATGATGATAT-GATGAGT
1 TTTGAGAT-ATGAAATAGATGAGT
*
26385020 TTTGTGATATGAAATAGATGA
1 TTTGAGATATGAAATAGATGA
26385041 TATTATGATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.34, C:0.00, G:0.27, T:0.39
Consensus pattern (23 bp):
TTTGAGATATGAAATAGATGAGT
Found at i:26390827 original size:12 final size:12
Alignment explanation
Indices: 26390810--26390839 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26390800 TCCTTTAAAG
*
26390810 AACTCTGAAAAT
1 AACTCTAAAAAT
26390822 AACTCTAAAAAT
1 AACTCTAAAAAT
26390834 AACTCT
1 AACTCT
26390840 TAACACAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.50, C:0.20, G:0.03, T:0.27
Consensus pattern (12 bp):
AACTCTAAAAAT
Found at i:26390872 original size:21 final size:22
Alignment explanation
Indices: 26390846--26390886 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
26390836 CTCTTAACAC
*
26390846 AGAGGC-ATACGCCCGTGTGGG
1 AGAGGCAACACGCCCGTGTGGG
26390867 AGAGGCAACACGCCCGTGTG
1 AGAGGCAACACGCCCGTGTG
26390887 ACATTTCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.22, C:0.27, G:0.39, T:0.12
Consensus pattern (22 bp):
AGAGGCAACACGCCCGTGTGGG
Found at i:26396783 original size:26 final size:26
Alignment explanation
Indices: 26396754--26396806 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
26396744 GTGCTGGAAA
26396754 TGTATCCGGGCTAAAGTCCCGCAGGC
1 TGTATCCGGGCTAAAGTCCCGCAGGC
26396780 TGTATCCGGGCTAAAGTCCCGCAGGC
1 TGTATCCGGGCTAAAGTCCCGCAGGC
26396806 T
1 T
26396807 TCGTGCTGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (26 bp):
TGTATCCGGGCTAAAGTCCCGCAGGC
Done.