Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 83 of 325
Found at i:26396819 original size:65 final size:65
Alignment explanation
Indices: 26396715--26396845 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
26396705 ACACTGGAAA
26396715 TGTATCCGGGCTAAAGACCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGC
1 TGTATCCGGGCTAAAGACCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGC
*
26396780 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGC
1 TGTATCCGGGCTAAAGACCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGC
26396845 T
1 T
26396846 TTGTGCTAGT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (65 bp):
TGTATCCGGGCTAAAGACCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGC
Found at i:26403494 original size:38 final size:38
Alignment explanation
Indices: 26403428--26403545 Score: 202
Period size: 38 Copynumber: 3.1 Consensus size: 38
26403418 AAGCAAGACA
*
26403428 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCC-GGCTAAAGTCCCGCAGGCTTCGTG
26403467 CTGGAAATGTATCCGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGCTAAAGTCCCGCAGGCTTCGTG
*
26403505 CTGGAAATGTATCCGGCTAAAGT-CCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGCTAAAGTCCCGCAGGCTTCGTG
26403542 CTGG
1 CTGG
26403546 TAACATAATT
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
37 17 0.22
38 46 0.60
39 14 0.18
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.24
Consensus pattern (38 bp):
CTGGAAATGTATCCGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:26410063 original size:40 final size:40
Alignment explanation
Indices: 26410019--26410253 Score: 330
Period size: 40 Copynumber: 5.9 Consensus size: 40
26410009 GGATATAGCT
* * *
26410019 ACTCGCTCGAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
26410059 ACTCGCACAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
26410099 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * * *
26410139 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * *
26410179 ACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-AATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
*
26410218 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
26410254 CATCCGAATA
Statistics
Matches: 176, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 32 0.18
40 143 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:26414400 original size:28 final size:28
Alignment explanation
Indices: 26414337--26414515 Score: 270
Period size: 28 Copynumber: 6.4 Consensus size: 28
26414327 ATATTAAGTC
*
26414337 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
26414364 CACACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
26414392 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
26414420 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
26414448 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
26414476 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
26414505 CGCACACTTAG
1 CGCACACTTAG
26414516 CGCCAATCTC
Statistics
Matches: 139, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
27 21 0.15
28 102 0.73
29 16 0.12
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26421520 original size:40 final size:40
Alignment explanation
Indices: 26421464--26421666 Score: 286
Period size: 40 Copynumber: 5.1 Consensus size: 40
26421454 TCGAATTTAA
* * *
26421464 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
26421504 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
26421544 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26421584 CCGGATATAATAACTCGCACAATTGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26421623 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
26421663 CCGG
1 CCGG
26421667 TTATCATCCG
Statistics
Matches: 147, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.23
40 112 0.76
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:26428199 original size:36 final size:39
Alignment explanation
Indices: 26428048--26428266 Score: 272
Period size: 40 Copynumber: 5.7 Consensus size: 39
26428038 GCTACTCGTT
* *
26428048 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
26428088 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
26428128 CAAATGCCTTCGGG-CTTAGCCCGGATTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
*
26428165 CAAATGCCTTC-GG-CTTAG-CCGGATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* * * *
26428201 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
26428242 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26428267 CATCATTCAA
Statistics
Matches: 161, Mismatches: 10, Indels: 16
0.86 0.05 0.09
Matches are distributed among these distances:
35 10 0.06
36 26 0.16
37 18 0.11
38 10 0.06
39 16 0.10
40 69 0.43
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:26428226 original size:113 final size:120
Alignment explanation
Indices: 26428029--26428266 Score: 296
Period size: 113 Copynumber: 2.0 Consensus size: 120
26428019 CGGAATTTAA
** *
26428029 CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATG
1 CCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
* *
26428094 CCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGC
66 CCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGC
* *
26428148 CCGGAT-TAG-TACTCGCACAAATGCCTTC-GG-CTTAG-CCGGAT-TAGTATCTCGCACAAATG
1 CCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
** * *
26428207 CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGC
66 CCTTCGGGA-CTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
26428262 CCGGA
1 CCGGA
26428267 CATCATTCAA
Statistics
Matches: 105, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
112 3 0.03
113 46 0.44
114 24 0.23
115 4 0.04
116 2 0.02
117 17 0.16
118 3 0.03
119 6 0.06
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (120 bp):
CCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
CCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
Found at i:26435975 original size:39 final size:39
Alignment explanation
Indices: 26435946--26436063 Score: 161
Period size: 39 Copynumber: 3.1 Consensus size: 39
26435936 GCTACTCGTT
*
26435946 CAAATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
*
26435985 CAAATGCCTTCGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
26436024 CAAATGCCTTCGG-CTTAGCCCGG-AATTGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
26436061 CAA
1 CAA
26436064 TGCAAGAAGT
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
37 13 0.18
38 9 0.13
39 47 0.66
40 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:26475265 original size:8 final size:8
Alignment explanation
Indices: 26475227--26475264 Score: 67
Period size: 8 Copynumber: 4.8 Consensus size: 8
26475217 TAACACCCCA
26475227 AAAATCCC
1 AAAATCCC
26475235 AAAATCCC
1 AAAATCCC
26475243 AAAATCCC
1 AAAATCCC
*
26475251 AAAATCTC
1 AAAATCCC
26475259 AAAATC
1 AAAATC
26475265 TTAAAATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.16
Consensus pattern (8 bp):
AAAATCCC
Found at i:26475270 original size:8 final size:8
Alignment explanation
Indices: 26475227--26475271 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
26475217 TAACACCCCA
*
26475227 AAAATCCC
1 AAAATCTC
*
26475235 AAAATCCC
1 AAAATCTC
*
26475243 AAAATCCC
1 AAAATCTC
26475251 AAAATCTC
1 AAAATCTC
*
26475259 AAAATCTT
1 AAAATCTC
26475267 AAAAT
1 AAAAT
26475272 TTTCTTTTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.53, C:0.27, G:0.00, T:0.20
Consensus pattern (8 bp):
AAAATCTC
Found at i:26476679 original size:18 final size:19
Alignment explanation
Indices: 26476644--26476681 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
26476634 AGAATTAGCC
26476644 AAATGGGCCAGAATGGGCT
1 AAATGGGCCAGAATGGGCT
*
26476663 AAATGGGCCTG-ATGGGCT
1 AAATGGGCCAGAATGGGCT
26476681 A
1 A
26476682 TTGGGCCTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.29, C:0.16, G:0.37, T:0.18
Consensus pattern (19 bp):
AAATGGGCCAGAATGGGCT
Found at i:26476804 original size:29 final size:29
Alignment explanation
Indices: 26476760--26476871 Score: 138
Period size: 29 Copynumber: 3.9 Consensus size: 29
26476750 ATAATATGAT
26476760 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAATGGGCCATATGAATGTGAA
* * * *
26476789 TTGGGCCTAGTAGGCCATAAGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATGTGAA
* *
26476818 CTGGG-CTAGATGGGCCATATGAATGAG-A
1 TTGGGCCTA-ATGGGCCATATGAATGTGAA
*
26476846 TTGGGCCTAATGGGCCATATGCATGT
1 TTGGGCCTAATGGGCCATATGAATGT
26476872 ATGTAGGGGT
Statistics
Matches: 68, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
28 23 0.34
29 45 0.66
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATGTGAA
Found at i:26476842 original size:58 final size:57
Alignment explanation
Indices: 26476752--26476864 Score: 156
Period size: 58 Copynumber: 2.0 Consensus size: 57
26476742 GCATGAGTAT
** * *
26476752 AATATGATTTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTAGTAGGCCATAAG
1 AATATGAACTGGGCCTAATGGGCCATATGAATGAG-ATTGGGCCTAATAGGCCATAAG
*
26476810 AATATGAACTGGG-CTAGATGGGCCATATGAATGAGATTGGGCCTAATGGGCCATA
1 AATATGAACTGGGCCTA-ATGGGCCATATGAATGAGATTGGGCCTAATAGGCCATA
26476865 TGCATGTATG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 21 0.43
58 28 0.57
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (57 bp):
AATATGAACTGGGCCTAATGGGCCATATGAATGAGATTGGGCCTAATAGGCCATAAG
Found at i:26477951 original size:17 final size:18
Alignment explanation
Indices: 26477918--26477952 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
26477908 GTTTAAGAAG
26477918 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
26477936 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
26477953 TTCAATGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:26482730 original size:17 final size:17
Alignment explanation
Indices: 26482708--26482744 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
26482698 GTAGAAAATG
26482708 AAAGATTATTGATAGAT
1 AAAGATTATTGATAGAT
26482725 AAAGATTATTGATAGAT
1 AAAGATTATTGATAGAT
26482742 AAA
1 AAA
26482745 CAACTTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.16, T:0.32
Consensus pattern (17 bp):
AAAGATTATTGATAGAT
Found at i:26484595 original size:92 final size:92
Alignment explanation
Indices: 26484438--26484619 Score: 337
Period size: 92 Copynumber: 2.0 Consensus size: 92
26484428 CACGACCTGG
*
26484438 TAACACGGGAGTGTGGTTAGGCTGTGTGTCCCCTGCACCAACATTTTGAGGAACAGAATGCTCAG
1 TAACACGGGAGTGTGGTTAGGCTGTGTGTCCCCTGCACCAAAATTTTGAGGAACAGAATGCTCAG
*
26484503 AATTGGGCACACGAGCTGAGACACACA
66 AATTGGGCACACGAGCAGAGACACACA
26484530 TAACACGGGAGTGTGGTTAGGCTGTGTGTCCCCTGCACCAAAATTTTGAGGAACAGAATGCTCAG
1 TAACACGGGAGTGTGGTTAGGCTGTGTGTCCCCTGCACCAAAATTTTGAGGAACAGAATGCTCAG
*
26484595 AATTGGGCACACGGGCAGAGACACA
66 AATTGGGCACACGAGCAGAGACACA
26484620 AGCGTGTGTC
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
92 87 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (92 bp):
TAACACGGGAGTGTGGTTAGGCTGTGTGTCCCCTGCACCAAAATTTTGAGGAACAGAATGCTCAG
AATTGGGCACACGAGCAGAGACACACA
Found at i:26487319 original size:26 final size:26
Alignment explanation
Indices: 26487290--26487340 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
26487280 TACATGCCAT
*
26487290 CCATAACACTCATT-AACCATAAGCAG
1 CCATAAC-CACATTAAACCATAAGCAG
*
26487316 CCATAACCACATTAAAGCATAAGCA
1 CCATAACCACATTAAACCATAAGCA
26487341 CATTTGCATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.45, C:0.29, G:0.08, T:0.18
Consensus pattern (26 bp):
CCATAACCACATTAAACCATAAGCAG
Found at i:26490089 original size:27 final size:26
Alignment explanation
Indices: 26490028--26490140 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
26490018 AGGAAGCGTC
* *
26490028 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
* *
26490056 CTAGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
26490083 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
26490111 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
26490137 CTGG
1 CTGG
26490141 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
26 7 0.09
27 36 0.49
28 31 0.42
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:26490122 original size:55 final size:54
Alignment explanation
Indices: 26490028--26490140 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 54
26490018 AGGAAGCGTC
* *
26490028 CTGGTGGCTATGCCACAAATTATCTGATCTAGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTAGTGACTCTGCCACAT-TATCTGTT
* * * *
26490083 CTGGTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTAGTGACTCTGCCACATTATCTGTT
26490137 CTGG
1 CTGG
26490141 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
54 19 0.37
55 32 0.63
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTAGTGACTCTGCCACATTATCTGTT
Found at i:26494227 original size:40 final size:41
Alignment explanation
Indices: 26494178--26494281 Score: 140
Period size: 40 Copynumber: 2.6 Consensus size: 41
26494168 CTATCGTGGT
* *
26494178 ATCGCACACTCAGTGCCACATATAGCTGAAGCTA-TTCCAA
1 ATCGCACACTAAGTGCCAAATATAGCTGAAGCTATTTCCAA
* * * *
26494218 TTCGCACACTAAGTGCTATATATAGCTGAAGCTATTTCGAA
1 ATCGCACACTAAGTGCCAAATATAGCTGAAGCTATTTCCAA
26494259 AT-GCACACTAAGTGCCAAATATA
1 ATCGCACACTAAGTGCCAAATATA
26494282 TTAGATTTGT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
40 49 0.89
41 6 0.11
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (41 bp):
ATCGCACACTAAGTGCCAAATATAGCTGAAGCTATTTCCAA
Found at i:26497915 original size:92 final size:92
Alignment explanation
Indices: 26497758--26497941 Score: 359
Period size: 92 Copynumber: 2.0 Consensus size: 92
26497748 CTTCCTCGAA
26497758 CCTCTTACCTCTGAATCAGCCTTTCTCTTTTCTTTGATGAGATCCTCGGCTTTACAAGCCCTCTC
1 CCTCTTACCTCTGAATCAGCCTTTCTCTTTTCTTTGATGAGATCCTCGGCTTTACAAGCCCTCTC
26497823 AACCAGTACTACAAATTCCATCAATTC
66 AACCAGTACTACAAATTCCATCAATTC
*
26497850 CCTCTTGCCTCTGAATCAGCCTTTCTCTTTTCTTTGATGAGATCCTCGGCTTTACAAGCCCTCTC
1 CCTCTTACCTCTGAATCAGCCTTTCTCTTTTCTTTGATGAGATCCTCGGCTTTACAAGCCCTCTC
26497915 AACCAGTACTACAAATTCCATCAATTC
66 AACCAGTACTACAAATTCCATCAATTC
26497942 AAGTATTCTG
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 91 1.00
ACGTcount: A:0.22, C:0.33, G:0.10, T:0.35
Consensus pattern (92 bp):
CCTCTTACCTCTGAATCAGCCTTTCTCTTTTCTTTGATGAGATCCTCGGCTTTACAAGCCCTCTC
AACCAGTACTACAAATTCCATCAATTC
Found at i:26499212 original size:32 final size:32
Alignment explanation
Indices: 26499151--26499241 Score: 87
Period size: 32 Copynumber: 2.8 Consensus size: 32
26499141 ACTAAGTGTG
**
26499151 TATATATGTGTAGTTGGATAAAGTTGAATGTC
1 TATATATGTGTAGTTGGATAAAGCCGAATGTC
*
26499183 TATATATGTGT-GATTGGATATAA-CCGAATGTG
1 TATATATGTGTAG-TTGGATA-AAGCCGAATGTC
* * * *
26499215 TATCTAGGTGTAGTTTGATATAGCCGA
1 TATATATGTGTAGTTGGATAAAGCCGA
26499242 TTGAGATGTA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
31 2 0.04
32 43 0.90
33 3 0.06
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (32 bp):
TATATATGTGTAGTTGGATAAAGCCGAATGTC
Found at i:26503395 original size:28 final size:28
Alignment explanation
Indices: 26503355--26503465 Score: 111
Period size: 29 Copynumber: 3.9 Consensus size: 28
26503345 TGTATCTGGC
* *
26503355 CCATTAAGCCC-AATCATATTCATATGAA
1 CCATTAGGCCCAAATCACATTCATATG-A
* *
26503383 CCATTAGGCCCAAATCACCTGT-ATATGGC
1 CCATTAGGCCCAAATCACAT-TCATAT-GA
* *
26503412 CCATTAGGCCCAAATCACATTTATATGG
1 CCATTAGGCCCAAATCACATTCATATGA
26503440 CCTATTAGGCCC-AATCACATTCATAT
1 CC-ATTAGGCCCAAATCACATTCATAT
26503466 TCATGCTCAT
Statistics
Matches: 71, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
28 27 0.38
29 42 0.59
30 2 0.03
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (28 bp):
CCATTAGGCCCAAATCACATTCATATGA
Found at i:26503412 original size:57 final size:57
Alignment explanation
Indices: 26503342--26503457 Score: 155
Period size: 57 Copynumber: 2.0 Consensus size: 57
26503332 AATTTCACAT
* *
26503342 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGAACC-ATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATG-ACCTATTAGGCCC-AATC
* * *
26503399 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCTATTAGGCCCAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGACCTATTAGGCCCAATC
26503456 AC
1 AC
26503458 ATTCATATTC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
57 30 0.58
58 22 0.42
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGACCTATTAGGCCCAATC
Found at i:26503701 original size:16 final size:16
Alignment explanation
Indices: 26503675--26503725 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
26503665 ATAGCCAAAC
*
26503675 TTTCAGCTTTTCGGCAT
1 TTTCGGCTTTTCGGC-T
*
26503692 TTT-GGCTTTTTGGCT
1 TTTCGGCTTTTCGGCT
* *
26503707 TTTCGGCATTTCGACT
1 TTTCGGCTTTTCGGCT
26503723 TTT
1 TTT
26503726 GCCGATACAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
15 4 0.14
16 21 0.75
17 3 0.11
ACGTcount: A:0.08, C:0.20, G:0.20, T:0.53
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCT
Found at i:26503724 original size:24 final size:24
Alignment explanation
Indices: 26503680--26503725 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
26503670 CAAACTTTCA
* *
26503680 GCTTTTCGGCATTTTGGCTTTTTG
1 GCTTTTCGGCATTTCGACTTTTTG
26503704 GCTTTTCGGCATTTCGACTTTT
1 GCTTTTCGGCATTTCGACTTTT
26503726 GCCGATACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.07, C:0.20, G:0.22, T:0.52
Consensus pattern (24 bp):
GCTTTTCGGCATTTCGACTTTTTG
Found at i:26509715 original size:21 final size:21
Alignment explanation
Indices: 26509672--26509716 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
26509662 CATTTACAAT
* **
26509672 AAAATACATAAGATTTTAAAA
1 AAAATACATAAAAAATTAAAA
*
26509693 AAAATACATAAAAAATTATAA
1 AAAATACATAAAAAATTAAAA
26509714 AAA
1 AAA
26509717 TTAGTATACT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (21 bp):
AAAATACATAAAAAATTAAAA
Found at i:26518775 original size:42 final size:42
Alignment explanation
Indices: 26518729--26518846 Score: 148
Period size: 42 Copynumber: 2.8 Consensus size: 42
26518719 GTACCAATGT
* *
26518729 CATATCCCAGATATGGTATTACACGAAGTTTCATATTGATGC
1 CATATCCCAGATATGGTCTTACACGAAGTCTCATATTGATGC
* * * * *
26518771 CATATCTCAGATATAGTCTTACACGTAGTCTCATGTTGATGT
1 CATATCCCAGATATGGTCTTACACGAAGTCTCATATTGATGC
*
26518813 CATATCCCATATATGGTCTTACAC-ATAGTCTCAT
1 CATATCCCAGATATGGTCTTACACGA-AGTCTCAT
26518847 TAACCTTCAT
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAAGTCTCATATTGATGC
Found at i:26524834 original size:21 final size:21
Alignment explanation
Indices: 26524810--26524854 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
26524800 TGCCAATAGA
26524810 GTTAGAAAGGATCCACAATGT
1 GTTAGAAAGGATCCACAATGT
*
26524831 GTTAGAAAGGATCCATAATGT
1 GTTAGAAAGGATCCACAATGT
26524852 GTT
1 GTT
26524855 TCATGTATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.29
Consensus pattern (21 bp):
GTTAGAAAGGATCCACAATGT
Found at i:26527345 original size:51 final size:49
Alignment explanation
Indices: 26527280--26527425 Score: 157
Period size: 51 Copynumber: 2.9 Consensus size: 49
26527270 ATAACGAAGC
* * * *
26527280 TATCTGGTAGGCATAGTAGCCTGCACTCAGTACTACACACGTGATCATAGT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCA-A-T
* * * * *
26527331 TTTCGGGTACGCATAGTAGACTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
26527380 TATCCGATACACGTAGTAGCCTGCACTTAGTGCTACACACGTGACC
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
26527426 TCACAATAGT
Statistics
Matches: 78, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
49 38 0.49
50 1 0.01
51 39 0.50
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (49 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:26527408 original size:49 final size:51
Alignment explanation
Indices: 26527291--26527425 Score: 148
Period size: 49 Copynumber: 2.7 Consensus size: 51
26527281 ATCTGGTAGG
* * * * * * *
26527291 CATAGTAGCCTGCACTCAGTACTACACACGTGATCATAGTTTTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCATAGTTATCCGATACA
* *
26527342 CATAGTAGACTGCACTTAGTACTACACATGCGACCA-A-TTATCCGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCATAGTTATCCGATACA
* * *
26527391 CGTAGTAGCCTGCACTTAGTGCTACACACGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC
26527426 TCACAATAGT
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
49 38 0.54
50 1 0.01
51 31 0.44
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCATAGTTATCCGATACA
Found at i:26532331 original size:85 final size:85
Alignment explanation
Indices: 26532164--26532332 Score: 214
Period size: 85 Copynumber: 2.0 Consensus size: 85
26532154 ACTGAGTGAC
* * * *
26532164 AGTTTGTTTAATCTGCAAATATGTTGTACACCCACAACAAGTGGCAGTAACTGCAAGTATGTGGT
1 AGTTTATTTAATATGCAAATATGTTGCACACCCACAACAAGTGGCAGTAACTGCAAATATGTGGT
**
26532229 TCGATCACTAATTAAGTGGT
66 TCGATCACTAACCAAGTGGT
* * * * *
26532249 AGTTTATTTAATATGTAAATATGTTGCGCACCTATAACAAGTGGCAGTAATTGCAAATATGTGGT
1 AGTTTATTTAATATGCAAATATGTTGCACACCCACAACAAGTGGCAGTAACTGCAAATATGTGGT
*
26532314 TCGATTA-TGAACCAAGTGG
66 TCGATCACT-AACCAAGTGG
26532333 CAGCTTGTCT
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
84 1 0.01
85 70 0.99
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (85 bp):
AGTTTATTTAATATGCAAATATGTTGCACACCCACAACAAGTGGCAGTAACTGCAAATATGTGGT
TCGATCACTAACCAAGTGGT
Found at i:26543479 original size:119 final size:120
Alignment explanation
Indices: 26543297--26543519 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
26543287 TCCTCGTTCA
* *
26543297 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
* *
26543362 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
26543417 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATACCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATACCTTCGGGA-CTTAACCCGG
* * *
26543479 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
26543520 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:26543519 original size:40 final size:40
Alignment explanation
Indices: 26543295--26543519 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
26543285 GCTCCTCGTT
* *
26543295 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
26543335 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
26543375 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
26543415 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
26543454 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
26543495 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26543520 CATCATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 118 0.73
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:26549647 original size:93 final size:93
Alignment explanation
Indices: 26549539--26549709 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
26549529 GCCCCTAAGT
* *
26549539 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26549604 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
26549632 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26549697 CGAGTTCGGATGC
66 CGAGTTCGGATGC
26549710 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:26549706 original size:46 final size:46
Alignment explanation
Indices: 26549534--26549706 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
26549524 AACCCGCCCC
* * * *
26549534 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
26549580 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
26549628 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
26549673 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
26549707 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:26552811 original size:21 final size:20
Alignment explanation
Indices: 26552778--26552817 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
26552768 CTTTGAAATA
*
26552778 GGGCACATGCCCGTGTGGAT
1 GGGCACACGCCCGTGTGGAT
26552798 GGGCAACACGCCCGTGTGGA
1 GGGC-ACACGCCCGTGTGGA
26552818 ACTTGAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.17, C:0.28, G:0.40, T:0.15
Consensus pattern (20 bp):
GGGCACACGCCCGTGTGGAT
Found at i:26554054 original size:47 final size:44
Alignment explanation
Indices: 26553983--26554246 Score: 212
Period size: 47 Copynumber: 5.7 Consensus size: 44
26553973 AGGGTATGAT
*
26553983 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCCATCAA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCAT-C-TCAA
* * * **
26554030 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTGTA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATC-TCAA
* * *
26554076 GTCGATG-CATGTCCTAGACATGTCTTACACTGGCTTACATCTCGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGC-T-CATCTC-AA
* * * *
26554122 GCCAAT-CCATGTCTCAGACATGTCTTACACTAGCTCTCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGTCTTACACT-G-GCTCATCTCAA
* *
26554167 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCT-ATCATAATA
1 -GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATC-TCA-A
*
26554214 TGGCTGATG-CATGTCCCAGACATGTCTTACACT
1 --GCCGATGCCATGTCCCAGACATGTCTTACACT
26554247 AGCACACGAA
Statistics
Matches: 178, Mismatches: 27, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
44 12 0.07
45 17 0.10
46 65 0.37
47 68 0.38
48 16 0.09
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (44 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCTCAA
Found at i:26554116 original size:46 final size:46
Alignment explanation
Indices: 26553985--26554246 Score: 186
Period size: 46 Copynumber: 5.7 Consensus size: 46
26553975 GGTATGATGC
**
26553985 CGATGCCATGTCCTAGACATGGTCTTACACTGGCT-CATCCATCAAGT
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTACAT-C-TTGAGT
* *
26554032 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCTTGTAGT
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTACATCTTG-AGT
* *
26554078 CGATG-CATGTCCTAGACAT-GTCTTACACTGGCTTACATCTCGAGGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGC-TACATCTTGA-GT
* * * * ** *
26554124 CAAT-CCATGT-CTCAGACAT-GTCTTACACTAGCTCTCGTCTCAATGC
1 CGATGCCATGTCCT-AGACATGGTCTTACACTGGCT-ACATCTTGA-GT
* * *
26554170 CAATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATATG-G-
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTA-CAT-CT-TGAGT
*
26554217 CTGATG-CATGTCCCAGACAT-GTCTTACACT
1 C-GATGCCATGTCCTAGACATGGTCTTACACT
26554247 AGCACACGAA
Statistics
Matches: 178, Mismatches: 22, Indels: 31
0.77 0.10 0.13
Matches are distributed among these distances:
44 12 0.07
45 18 0.10
46 65 0.37
47 62 0.35
48 20 0.11
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTGGCTACATCTTGAGT
Found at i:26554699 original size:23 final size:23
Alignment explanation
Indices: 26554669--26554715 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
26554659 AACTTCTTCA
*
26554669 TATCTTAAGCCTAGAAGAACCCT
1 TATCTTAAACCTAGAAGAACCCT
26554692 TATCTTAAACCTAGAAGAACCCT
1 TATCTTAAACCTAGAAGAACCCT
26554715 T
1 T
26554716 TTTACTCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.28
Consensus pattern (23 bp):
TATCTTAAACCTAGAAGAACCCT
Found at i:26557222 original size:20 final size:20
Alignment explanation
Indices: 26557197--26557264 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
26557187 TAAAACGATA
*
26557197 TCGATACCAAGATAAAGGTT
1 TCGATACTAAGATAAAGGTT
* *
26557217 TCGATACTATA-ATAAAGATA
1 TCGATACTA-AGATAAAGGTT
** *
26557237 TCGATACTTTGATAAATGTT
1 TCGATACTAAGATAAAGGTT
26557257 TCGATACT
1 TCGATACT
26557265 TTGAGAAAAG
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
20 37 0.97
21 1 0.03
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (20 bp):
TCGATACTAAGATAAAGGTT
Found at i:26557265 original size:20 final size:19
Alignment explanation
Indices: 26557207--26557268 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 19
26557197 TCGATACCAA
*
26557207 GATAAAGGTTTCGATACTAT
1 GATAAA-GTTTCGATACTTT
* *
26557227 AATAAAGATATCGATACTTT
1 GATAAAG-TTTCGATACTTT
26557247 GATAAATGTTTCGATACTTT
1 GATAAA-GTTTCGATACTTT
26557267 GA
1 GA
26557269 GAAAAGTGTT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 1 0.03
20 33 0.94
21 1 0.03
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATAAAGTTTCGATACTTT
Found at i:26557282 original size:20 final size:20
Alignment explanation
Indices: 26557237--26557284 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
26557227 AATAAAGATA
* *
26557237 TCGATACTTTGATAAATGTT
1 TCGATACTTTGAGAAAAGTT
26557257 TCGATACTTTGAGAAAAGTGT
1 TCGATACTTTGAGAAAAGT-T
26557278 T-GATACT
1 TCGATACT
26557285 ATAAGCAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (20 bp):
TCGATACTTTGAGAAAAGTT
Found at i:26564773 original size:24 final size:22
Alignment explanation
Indices: 26564746--26564790 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
26564736 ACATCTAACC
*
26564746 AATATATATCTTAAAGCAAGAGT
1 AATA-ATAGCTTAAAGCAAGAGT
26564769 -A-AATAGCTTAAAGCAAGAGT
1 AATAATAGCTTAAAGCAAGAGT
26564789 AA
1 AA
26564791 ATAGCTAGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
20 17 0.85
21 2 0.10
22 1 0.05
ACGTcount: A:0.51, C:0.09, G:0.16, T:0.24
Consensus pattern (22 bp):
AATAATAGCTTAAAGCAAGAGT
Found at i:26564780 original size:20 final size:20
Alignment explanation
Indices: 26564755--26564796 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
26564745 CAATATATAT
26564755 CTTAAAGCAAGAGTAAATAG
1 CTTAAAGCAAGAGTAAATAG
26564775 CTTAAAGCAAGAGTAAATAG
1 CTTAAAGCAAGAGTAAATAG
26564795 CT
1 CT
26564797 AGCCATGACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (20 bp):
CTTAAAGCAAGAGTAAATAG
Found at i:26577332 original size:19 final size:20
Alignment explanation
Indices: 26577308--26577346 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
26577298 TCTTATTTTT
26577308 TATTTGTTTTT-TGTTTTAA
1 TATTTGTTTTTATGTTTTAA
26577327 TATTTGTTTTTATGTTTTAA
1 TATTTGTTTTTATGTTTTAA
26577347 ATGTATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.18, C:0.00, G:0.10, T:0.72
Consensus pattern (20 bp):
TATTTGTTTTTATGTTTTAA
Found at i:26577364 original size:25 final size:23
Alignment explanation
Indices: 26577308--26577372 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 23
26577298 TCTTATTTTT
*
26577308 TATTTGTTTTT-TGTTTT-AA--
1 TATTTGTTTTTATATTTTAAATG
*
26577327 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
26577350 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
26577373 GTTTTTTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 11 0.28
20 6 0.15
21 2 0.05
23 6 0.15
24 3 0.08
25 11 0.28
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:26585126 original size:30 final size:30
Alignment explanation
Indices: 26585069--26585128 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
26585059 CACATGGGTA
*
26585069 GACACAGGGGCGTGTGTCTAGGCCGTGTGT
1 GACACAGGGGCGTGTGTCCAGGCCGTGTGT
*
26585099 GACACAGGGGCGTGTGATCCA-GTCGTGTGT
1 GACACAGGGGCGTGTG-TCCAGGCCGTGTGT
26585129 TCCCTGCACC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 24 0.89
31 3 0.11
ACGTcount: A:0.15, C:0.20, G:0.42, T:0.23
Consensus pattern (30 bp):
GACACAGGGGCGTGTGTCCAGGCCGTGTGT
Found at i:26590414 original size:42 final size:42
Alignment explanation
Indices: 26590368--26590457 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 42
26590358 TATACGGGAC
* * * *
26590368 CTCATATCGATGCCATTTCCCAGACATAGTCTTACACGAAAT
1 CTCATATCAACGCCATATCCCAAACATAGTCTTACACGAAAT
* * *
26590410 CTCATATCAACGCCATATCCCAAATATGGTCTTACATGAAAT
1 CTCATATCAACGCCATATCCCAAACATAGTCTTACACGAAAT
*
26590452 CACATA
1 CTCATA
26590458 CCGAGGACGA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.28
Consensus pattern (42 bp):
CTCATATCAACGCCATATCCCAAACATAGTCTTACACGAAAT
Found at i:26590535 original size:48 final size:48
Alignment explanation
Indices: 26590478--26590649 Score: 227
Period size: 48 Copynumber: 3.6 Consensus size: 48
26590468 TGCTATATCT
* * * * *
26590478 CAGATATGGTCTTACATTGGCACACATATCAATGCCGGTGCCATGTCC
1 CAGACATGGTCTTACACTGGCTCTCATATCAATGCCGATGCCATGTCC
* * **
26590526 CGGACATGGTCTTACACTAGCTCTCATATCAATGTTGATGCCATGTCC
1 CAGACATGGTCTTACACTGGCTCTCATATCAATGCCGATGCCATGTCC
* * *
26590574 CAAACATGGCCTTACACTGGGTCTCATATCAATGCCGATGCCATGTCC
1 CAGACATGGTCTTACACTGGCTCTCATATCAATGCCGATGCCATGTCC
*
26590622 CAGACATGGTCTTACACTGGTTCTCATA
1 CAGACATGGTCTTACACTGGCTCTCATA
26590650 AATCGTGGTG
Statistics
Matches: 105, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 105 1.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
CAGACATGGTCTTACACTGGCTCTCATATCAATGCCGATGCCATGTCC
Found at i:26593481 original size:29 final size:29
Alignment explanation
Indices: 26593418--26593485 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
26593408 TAATCAACCA
26593418 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
26593447 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
26593476 CGCACACTTA
1 CGCACACTTA
26593486 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:26593626 original size:29 final size:30
Alignment explanation
Indices: 26593587--26593665 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
26593577 CTTAATAATC
26593587 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
26593617 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
26593646 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26593666 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:26597083 original size:23 final size:23
Alignment explanation
Indices: 26597053--26597102 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
26597043 AAAGATTACA
*
26597053 AACTCCTTTCCCGGCTCAAGTTG
1 AACTCCTTTCCCGACTCAAGTTG
26597076 AACTCCTTTCCCGACTCAAGTTG
1 AACTCCTTTCCCGACTCAAGTTG
26597099 AACT
1 AACT
26597103 AACACTAGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.22, C:0.34, G:0.14, T:0.30
Consensus pattern (23 bp):
AACTCCTTTCCCGACTCAAGTTG
Found at i:26601603 original size:42 final size:42
Alignment explanation
Indices: 26601542--26601659 Score: 146
Period size: 42 Copynumber: 2.8 Consensus size: 42
26601532 ATGTTGATGC
* * * *
26601542 CAATGCCATGTCCCAGACATGATCTTATACGGAACCTTATAT
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAACCTCATAT
* *
26601584 CGATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAACCTCATAT
* * * *
26601626 CAACGCCATATCCCAGATATGGTCTTACATGAAA
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAA
26601660 TCACATACCG
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 65 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (42 bp):
CAATGCCATGTCCCAGACATGGTCTTACACGAAACCTCATAT
Found at i:26601660 original size:42 final size:44
Alignment explanation
Indices: 26601588--26601703 Score: 128
Period size: 42 Copynumber: 2.6 Consensus size: 44
26601578 TTATATCGAT
* * * *
26601588 GCCATGTCCCAGACATGGTCTTACACGAAATCTCATATC-A-AC
1 GCCATATCCCAGATATGGTCTTACACGAAATCACATACCGAGAC
* *
26601630 GCCATATCCCAGATATGGTCTTACATGAAATCACATACCGAGGCTGAT
1 GCCATATCCCAGATATGGTCTTACACGAAATCACATACCGA----GAC
26601678 GCCATATCCCAGATATGGTCTTACAC
1 GCCATATCCCAGATATGGTCTTACAC
26601704 TGGCACACAT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
42 34 0.56
43 1 0.02
48 26 0.43
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (44 bp):
GCCATATCCCAGATATGGTCTTACACGAAATCACATACCGAGAC
Found at i:26601776 original size:48 final size:48
Alignment explanation
Indices: 26601583--26601858 Score: 228
Period size: 48 Copynumber: 5.9 Consensus size: 48
26601573 GAACCTTATA
**
26601583 TCGATGCCATGTCCCAGACATGGTCTTACAC-GAAATCTCATATCAA--
1 TCGATGCCATGTCCCAGACATGGTCTTACACTG-GCTCTCATATCAACG
* * ** * * *
26601629 -C---GCCATATCCCAGATATGGTCTTACA-TGAAATCACATACCGA-G
1 TCGATGCCATGTCCCAGACATGGTCTTACACTG-GCTCTCATATCAACG
* * * * * *
26601672 GCTGATGCCATATCCCAGATATGGTCTTACACTGGCACACATATCAATG
1 TC-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAACG
* * * * * * *
26601721 CCAATGCCATGTCCTAGATATGGGCTTACACTTGCTCTCATGTCAACG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAACG
* * *
26601769 TCGATGCCATGTCCCAGACATGGTCTTTCTCTGGCTCTCATATCAACA
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAACG
*
26601817 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA
26601859 AATCGTGGTG
Statistics
Matches: 188, Mismatches: 33, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
42 35 0.19
44 1 0.01
45 1 0.01
48 147 0.78
49 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (48 bp):
TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAACG
Found at i:26603390 original size:40 final size:40
Alignment explanation
Indices: 26603313--26603514 Score: 266
Period size: 40 Copynumber: 5.1 Consensus size: 40
26603303 ACCCAAGTAT
* *
26603313 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
26603352 CTTCGGGTCTTAGCCCGTATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* **
26603392 TTTCGGGACTTAGCCCGGATATAGTCGTTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
26603432 CTTCGAGACTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
26603472 CTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
26603512 CTT
1 CTT
26603515 TGGATCTTAG
Statistics
Matches: 141, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 12 0.09
40 128 0.91
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:26603524 original size:80 final size:80
Alignment explanation
Indices: 26603313--26603529 Score: 314
Period size: 80 Copynumber: 2.7 Consensus size: 80
26603303 ACCCAAGTAT
* * *
26603313 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGTATATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGT
26603377 CACTAGCATAAATGC
66 CACTAGCATAAATGC
* ** *
26603392 TTTCGGGACTTAGCCCGGATATAGTC-GTTAGCACAAATGCCTTCGAGA-CTTAGCCCGGATATA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCG-GATCTTAGCCCGGATATA
26603455 GTCACTAGCATAAATGC
64 GTCACTAGCATAAATGC
* *
26603472 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTTGGATCTTAGTCCGG
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGCCCGG
26603530 TTATCATTCG
Statistics
Matches: 120, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
79 14 0.12
80 104 0.87
81 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGT
CACTAGCATAAATGC
Found at i:26616305 original size:43 final size:43
Alignment explanation
Indices: 26616258--26616360 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 43
26616248 CCTCGATTGA
* * **
26616258 GATTTACGTATAAGACCATGTTTGGGACATCGGCATC-ATATCT
1 GATTTACGTGTAAGACCATGTCTGGGACAGAGGCATCGATAT-T
*
26616301 GATTT-CGTGTAAGACCTTGTCTGGGACAGAGGCATCGATATT
1 GATTTACGTGTAAGACCATGTCTGGGACAGAGGCATCGATATT
* *
26616343 GAATTACATGTAAGACCA
1 GATTTACGTGTAAGACCA
26616361 CGTCCGAGAC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 31 0.62
43 19 0.38
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.30
Consensus pattern (43 bp):
GATTTACGTGTAAGACCATGTCTGGGACAGAGGCATCGATATT
Found at i:26622463 original size:47 final size:47
Alignment explanation
Indices: 26622372--26622781 Score: 655
Period size: 47 Copynumber: 8.7 Consensus size: 47
26622362 TTAGGATTCT
* *
26622372 ATGTGATGGATGTGAACATGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-A-GTGTATATATGTGATAAGGCCTAATGGCCG
26622421 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26622468 ATGTGATGAATGTGAAA--GTATATATGTGATAAGGCCTAAT-GCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
26622512 ATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
26622559 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGACCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26622606 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26622653 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
26622700 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
26622747 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
26622782 TCCGAAGGGC
Statistics
Matches: 341, Mismatches: 17, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
44 21 0.06
45 23 0.07
46 22 0.06
47 259 0.76
48 1 0.00
49 15 0.04
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:26622954 original size:36 final size:37
Alignment explanation
Indices: 26622899--26622976 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
26622889 CCGAGCTCTA
* *
26622899 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
26622935 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26622972 AAGAC
1 AAGAC
26622977 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26624246 original size:40 final size:40
Alignment explanation
Indices: 26624191--26624420 Score: 370
Period size: 40 Copynumber: 5.8 Consensus size: 40
26624181 GAGAATTGAG
26624191 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
26624231 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
26624271 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
26624311 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
26624351 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
26624391 AGTGATATATCCGTGCTAAACCCCGAAGAG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAG
26624421 TAATCATGCT
Statistics
Matches: 178, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 178 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:26628050 original size:21 final size:23
Alignment explanation
Indices: 26628010--26628051 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
26628000 GTGAAAGTAT
26628010 ATGTGTATGTGAAGTATATGATA
1 ATGTGTATGTGAAGTATATGATA
26628033 ATGTG-ATGTGAA-TATATGA
1 ATGTGTATGTGAAGTATATGA
26628052 AAATCTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 7 0.37
23 5 0.26
ACGTcount: A:0.36, C:0.00, G:0.26, T:0.38
Consensus pattern (23 bp):
ATGTGTATGTGAAGTATATGATA
Found at i:26628218 original size:47 final size:47
Alignment explanation
Indices: 26628074--26628527 Score: 774
Period size: 47 Copynumber: 9.7 Consensus size: 47
26628064 TTTAGGATCT
* *
26628074 ATGTGATGGATGTGAAATGTATATATATGTGATAA-GCCTAATGGCCG
1 ATGTGATGAATGTGAAA-GTGTATATATGTGATAAGGCCTAATGGCCG
26628121 A--TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-C-
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26628164 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26628211 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26628258 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26628305 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26628352 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26628399 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
26628446 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
26628493 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
26628528 TCCGAAGGGC
Statistics
Matches: 390, Mismatches: 12, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
43 1 0.00
44 17 0.04
45 63 0.16
46 1 0.00
47 308 0.79
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:26628701 original size:37 final size:36
Alignment explanation
Indices: 26628645--26628722 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 36
26628635 CCGAGCTCTA
* * *
26628645 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATG-CCGGGT
*
26628682 AAGACCCGATAACTTCGTGTGGAGATTATGCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGCCGGGT
26628718 AAGAC
1 AAGAC
26628723 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 11 0.30
37 26 0.70
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.24
Consensus pattern (36 bp):
AAGACCCGATAACTACGTGTGGAGATTATGCCGGGT
Found at i:26632009 original size:47 final size:47
Alignment explanation
Indices: 26631868--26632329 Score: 744
Period size: 47 Copynumber: 9.7 Consensus size: 47
26631858 TTAGGATTCT
* *
26631868 ATGTGATGGATGTGAACATGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-A-GTGTATATATGTGATAAGGCCTAATGGCCG
26631917 ATGTGATGAATGTGAAAGTGTACATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGT--ATATATGTGATAAGGCCTAATGGCCG
26631966 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26632013 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
26632060 ATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
26632107 ATGTGATGAATGTGAAAGTATATATATGTGATAAGACCTAATCGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
26632154 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26632201 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
26632248 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
26632295 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
26632330 TCCCGAAGGG
Statistics
Matches: 390, Mismatches: 21, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
47 327 0.84
48 1 0.00
49 62 0.16
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:26632504 original size:37 final size:37
Alignment explanation
Indices: 26632448--26632526 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26632438 CCGAGCTCTA
* * *
26632448 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
26632485 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26632522 AAGAC
1 AAGAC
26632527 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26636871 original size:47 final size:47
Alignment explanation
Indices: 26636642--26637242 Score: 818
Period size: 47 Copynumber: 12.5 Consensus size: 47
26636632 AATATAAATG
*
26636642 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
* *
26636691 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
* *
26636740 TGTGAAAGTGTATATAAATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATAT--ATGTGATAAGGCCGAATGGCCAATGTGATGAA
* *
26636789 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
26636838 TGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
26636885 TGTGAAAGTGTATATATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
1 TGTGAAAGTG----TATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
* *
26636936 TGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
1 TGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
* * *
26636983 TGTGAACA-TGCATATATGAGATAAAGCCGAATGGCCAATGTGATGAA
1 TGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
*
26637030 TGTGAACA-TG-AGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
1 TGTGAA-AGTGTA-TATATGTGATAAGGCCGAATGGCCAATGTGATGAA
* *
26637077 TGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
1 TGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
* *
26637124 TGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAA
1 TGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
*
26637171 TGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGA
1 TGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
* *
26637218 TGTGGAAGTGTATAAATGTGATAAG
1 TGTGAAAGTGTATATATGTGATAAG
26637243 TCCCGAAGGG
Statistics
Matches: 517, Mismatches: 23, Indels: 26
0.91 0.04 0.05
Matches are distributed among these distances:
46 2 0.00
47 322 0.62
49 142 0.27
51 50 0.10
52 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
TGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
Found at i:26637120 original size:22 final size:22
Alignment explanation
Indices: 26637093--26637214 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
26637083 CATGTGTATG
26637093 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
26637115 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
26637140 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
26637162 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
26637187 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
26637209 TGTGAT
1 TGTGAT
26637215 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:26650695 original size:78 final size:77
Alignment explanation
Indices: 26650569--26650747 Score: 315
Period size: 78 Copynumber: 2.3 Consensus size: 77
26650559 CAACCCCTCG
*
26650569 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGAT-ATCGCACTTAGCA
1 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGATCA-CGCACATAGCA
26650633 CCACCAATGAATC
65 CCACCAATGAATC
26650646 GGGGAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATATGGTGGATCACGCACATAGCA
1 GGGGAATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATATGGTGGATCACGCACATAGCA
26650711 CCACCAATGAATC
65 CCACCAATGAATC
*
26650724 GGGGAATCAGCACACAGCAACCCC
1 GGGGAATCAGCACATAGCAACCCC
26650748 TTTATATACA
Statistics
Matches: 98, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
77 25 0.26
78 72 0.73
79 1 0.01
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.19
Consensus pattern (77 bp):
GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGATCACGCACATAGCAC
CACCAATGAATC
Found at i:26651116 original size:29 final size:30
Alignment explanation
Indices: 26651083--26651139 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
26651073 CCACCCAACT
*
26651083 TTTTG-AAAATTATAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
26651112 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
26651140 GCTCGGAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 5 0.22
30 18 0.78
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:26654939 original size:47 final size:47
Alignment explanation
Indices: 26654880--26655510 Score: 985
Period size: 47 Copynumber: 13.4 Consensus size: 47
26654870 GATGTACAAG
* *
26654880 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
26654927 GTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
26654974 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
26655021 GTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
26655068 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
26655115 GT-TCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGT-ATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
26655162 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
26655209 GTGCATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
26655258 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
26655305 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
26655352 GTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * * * *
26655399 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
26655446 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
26655493 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
26655511 TCCCAAAGGG
Statistics
Matches: 537, Mismatches: 43, Indels: 8
0.91 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 492 0.92
48 1 0.00
49 43 0.08
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:26654963 original size:22 final size:22
Alignment explanation
Indices: 26654935--26655057 Score: 72
Period size: 22 Copynumber: 5.3 Consensus size: 22
26654925 AAGTGCATAT
26654935 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
26654957 ATGTGATGAATG-TGAAAGTGTG-TA
1 ATGTGAT-AAGGCCG-AA-TG-GCCA
*
26654981 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * * *
26655004 ATGTGATGAATG-TGAAAGTGCATA
1 ATGTGAT-AAGGCCGAATG-GC-CA
26655028 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
26655051 ATGTGAT
1 ATGTGAT
26655058 GAATGTGAAA
Statistics
Matches: 73, Mismatches: 16, Indels: 24
0.65 0.14 0.21
Matches are distributed among these distances:
22 26 0.36
23 14 0.19
24 14 0.19
25 19 0.26
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:26659190 original size:46 final size:44
Alignment explanation
Indices: 26659104--26659273 Score: 137
Period size: 46 Copynumber: 3.7 Consensus size: 44
26659094 GACAAGAGCT
* * **
26659104 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGCAATGTAGGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAAATGT--GCC
*
26659150 AGTGTAAGACATGTCTGGGACATGCATCAG-CTACAAAATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCT-CAAAATGTGCC
* * * * * *
26659194 AGTGTAAGACCATGTCTAGGACATGGCATCGAAACGT-ATATAGGTGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC--AGCCTCA-AAATGTGCC
26659242 AGTGTAAGACCATGTCTGGGACATGGCATCAG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAG
26659274 TATTACACCC
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
44 11 0.10
45 15 0.14
46 40 0.38
47 1 0.01
48 37 0.35
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAAATGTGCC
Found at i:26666384 original size:40 final size:40
Alignment explanation
Indices: 26666294--26666478 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
26666284 TCGAATGATG
* *
26666294 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCAAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
**
26666333 ATCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
26666374 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
26666413 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
26666452 AACCGGGCTATGTCCCGAAGGCCTTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
26666479 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:26666430 original size:79 final size:80
Alignment explanation
Indices: 26666294--26666473 Score: 224
Period size: 79 Copynumber: 2.3 Consensus size: 80
26666284 TCGAATGATG
* *
26666294 TCCGGGCTAAGTCCCGAAGGCTTTGTGCAAAGTGACTATATCCGAACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCAAAGTGACTAAATCCGAACTAAGATCCGAAGGCATTT
26666359 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * ***
26666373 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGC-TTGGTGCAAAGTGACTAAATCCGAACTAAGAT-CCGAAGGCA
26666435 TTTGTGCGAGTTACTATA
63 TTTGTGCGAGTTACTATA
* *
26666453 ACCGGGCTATGTCCCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGC
26666474 CTTTGAACGA
Statistics
Matches: 87, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 59 0.68
80 27 0.31
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCAAAGTGACTAAATCCGAACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:26666500 original size:79 final size:79
Alignment explanation
Indices: 26666347--26666501 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
26666337 GAACTAAGAT
* **
26666347 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
26666412 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
26666426 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCCTTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
26666489 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
26666502 ATTCCAAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.62
80 23 0.35
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:26671750 original size:56 final size:56
Alignment explanation
Indices: 26671664--26671783 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
26671654 ACAAGGGATG
26671664 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
26671720 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
26671776 ATGGGCAA
1 ATGGGCAA
26671784 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:26672995 original size:40 final size:40
Alignment explanation
Indices: 26672911--26673135 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
26672901 TCGAATGATG
* * * *
26672911 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26672951 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26672991 TCCGGGCTAAG-CTCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26673030 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26673070 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26673111 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26673136 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 120 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26673157 original size:119 final size:119
Alignment explanation
Indices: 26672911--26673168 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
26672901 TCGAATGATG
* *
26672911 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* * **
26672976 GTGCGAGATACTAATTCCGGGCTAAGCTCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
* * * **
26673030 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
26673093 TTGTGTGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTAAA
* *
26673150 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26673169 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:26679610 original size:56 final size:56
Alignment explanation
Indices: 26679524--26679643 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
26679514 ACAAGGGATG
26679524 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
26679580 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
26679636 ATGGGCAA
1 ATGGGCAA
26679644 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:26681013 original size:40 final size:40
Alignment explanation
Indices: 26680775--26680999 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
26680765 TCGAATGATG
* * * *
26680775 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26680815 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26680855 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26680894 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26680934 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26680975 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26681000 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26681021 original size:119 final size:119
Alignment explanation
Indices: 26680775--26681032 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
26680765 TCGAATGATG
* *
26680775 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
26680840 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
26680894 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
26680957 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
26681014 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26681033 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:26686958 original size:48 final size:48
Alignment explanation
Indices: 26686872--26687224 Score: 134
Period size: 48 Copynumber: 7.6 Consensus size: 48
26686862 TCTATATACT
* * *
26686872 GATGCCATATCCCAGATATGGTCTTATACAAAGTCTCATGTCGGTGCC
1 GATGCCATATCCCAGATATGGTCTTATACAAAGCCTCATATCGATGCC
* * *
26686920 GATGCCATGTCCCAGGCT-TGGTCTTATAC-GAGACCTCATATCGATGCC
1 GATGCCATATCCCA-GATATGGTCTTATACAAAG-CCTCATATCGATGCC
* * * * *
26686968 -ATG-----TCCCAAACATGGTCTTACATGAAA-TCTCATATC-A----
1 GATGCCATATCCCAGATATGGTCTTATA-CAAAGCCTCATATCGATGCC
* * * * * * * *
26687005 -ACGCCATATCACAGATATGGTCTTACACGAAA-TCACATACCGAGGTC
1 GATGCCATATCCCAGATATGGTCTTATAC-AAAGCCTCATATCGATGCC
* * ** * * *
26687052 GATGCCATATCCCAAATATGGTCTTACAC-TGGCACACATATCAATGTC
1 GATGCCATATCCCAGATATGGTCTTATACAAAGC-CTCATATCGATGCC
* * * * *
26687100 GATGCCATGTCCCAGACATGGTCTTACAC-TAGCTCTCATATCAATGCC
1 GATGCCATATCCCAGATATGGTCTTATACAAAGC-CTCATATCGATGCC
* * * * * **
26687148 AATGCCATGTCCCAGACATGGT-TT-TACACTAGCTCTCATATCAACACC
1 GATGCCATATCCCAGATATGGTCTTATACA-AAGC-CTCATATCGATGCC
* *
26687196 GATGCCATGTCCCAGACATGGTCTTATAC
1 GATGCCATATCCCAGATATGGTCTTATAC
26687225 TAGCTCTCAT
Statistics
Matches: 241, Mismatches: 41, Indels: 44
0.74 0.13 0.13
Matches are distributed among these distances:
37 2 0.01
41 1 0.00
42 48 0.20
43 1 0.00
44 1 0.00
46 2 0.01
47 7 0.03
48 172 0.71
49 4 0.02
50 3 0.01
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (48 bp):
GATGCCATATCCCAGATATGGTCTTATACAAAGCCTCATATCGATGCC
Found at i:26687000 original size:42 final size:42
Alignment explanation
Indices: 26686919--26687221 Score: 165
Period size: 48 Copynumber: 6.6 Consensus size: 42
26686909 ATGTCGGTGC
* * * * *
26686919 CGATGCCATGTCCCAGGCTTGGTCTTATACGAGACCTCATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
* *
26686961 CGATGCCATGTCCCAAACATGGTCTTACATGAAATCTCATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
* * * * * *
26687003 CAACGCCATATCACAGATATGGTCTTACACGAAATCACATACCGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACGAAATCTCAT----A--T
* * * * *
26687051 CGATGCCATATCCCAAATATGGTCTTACACTGGCACACATATCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACAC--G-A-A-ATCTC-ATAT
* **
26687099 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
* * **
26687141 CAATGCCAATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATAT
1 C---G---ATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
26687189 CAACACCGATGCCATGTCCCAGACATGGTCTTA
1 ------CGATGCCATGTCCCAGACATGGTCTTA
26687222 TACTAGCTCT
Statistics
Matches: 205, Mismatches: 32, Indels: 42
0.73 0.11 0.15
Matches are distributed among these distances:
42 71 0.35
43 3 0.01
45 2 0.01
46 1 0.00
48 118 0.58
50 1 0.00
51 2 0.01
52 1 0.00
53 3 0.01
54 3 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (42 bp):
CGATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
Found at i:26687227 original size:48 final size:48
Alignment explanation
Indices: 26687051--26687235 Score: 262
Period size: 48 Copynumber: 3.9 Consensus size: 48
26687041 ATACCGAGGT
* * * * * * *
26687051 CGATGCCATATCCCAAATATGGTCTTACACTGGCACACATATCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGC
26687099 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGC
* * **
26687147 CAATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATATCAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGC
*
26687195 CGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCATA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA
26687236 AATCGTGGTG
Statistics
Matches: 123, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 123 1.00
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGC
Found at i:26691303 original size:17 final size:17
Alignment explanation
Indices: 26691283--26691332 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
26691273 AATCATTAAA
26691283 GCCCGATAAATGA-AAGT
1 GCCCGATAAATGATAA-T
* *
26691300 GCCCGATCAATTATAAT
1 GCCCGATAAATGATAAT
*
26691317 GCCCGACAAATGATAA
1 GCCCGATAAATGATAA
26691333 ATGATAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 25 0.93
18 2 0.07
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (17 bp):
GCCCGATAAATGATAAT
Found at i:26695445 original size:55 final size:54
Alignment explanation
Indices: 26695358--26695612 Score: 231
Period size: 55 Copynumber: 4.8 Consensus size: 54
26695348 ATTAGGGTTT
* *
26695358 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGTTTTCTAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGC-ATTGGTAAGTTTTCTAAGGC
* * * * *
26695413 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-TTCTAAGGC
* *
26695468 AAAGG-TTTCATGTAAGACCATGCCAAGGCATGGCATTGGTGAA---TTCATAAGGC
1 -AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGT-AAGTTTTC-TAAGGC
* * * *
26695521 AAGGATACCATGTAAGTCCATGTCAAGACATGGCAATGGTAAG-TTTC-AA---
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTTCTAAGGC
* ** * * *
26695570 AAGGATACCACATAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
26695613 GTAGCCGCGT
Statistics
Matches: 168, Mismatches: 25, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
49 38 0.23
52 9 0.05
53 35 0.21
54 13 0.08
55 67 0.40
56 6 0.04
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTTCTAAGGC
Found at i:26695564 original size:108 final size:108
Alignment explanation
Indices: 26695366--26695565 Score: 305
Period size: 108 Copynumber: 1.8 Consensus size: 108
26695356 TTAAGGATAC
*
26695366 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGTTTTCTAAGGCAAGGAAATCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAA--TTTCTAAGGCAAGGAAACCATGTAAGAC
*
26695431 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTTT
64 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTTT
* *
26695476 CATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAA-TTCATAAGGCAAGGATACCATGTAAGTC
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGT-AATTTC-TAAGGCAAGGAAACCATGTAAGAC
*
26695539 CATGTCAAGACATGGCAATGGTAAGTT
64 CATGTCAAGACATGGCAATGATAAGTT
26695566 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
107 3 0.04
108 46 0.55
109 6 0.07
110 28 0.34
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCAATTGGTAATTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTTT
Found at i:26695824 original size:16 final size:16
Alignment explanation
Indices: 26695803--26695833 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26695793 ATAAATTTGA
26695803 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
26695819 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
26695834 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:26699962 original size:43 final size:43
Alignment explanation
Indices: 26699855--26699962 Score: 146
Period size: 43 Copynumber: 2.5 Consensus size: 43
26699845 TAGCCCAGCT
*
26699855 ATGGTCTTACACA-AAATCAAATAATGATGCCAATGTCCCAAAC
1 ATGGTCTTACACATAAA-CACATAATGATGCCAATGTCCCAAAC
** * * *
26699898 ATGGTCTTACAGGTAATCACATAATGATGCCAATGTCCTAGAC
1 ATGGTCTTACACATAAACACATAATGATGCCAATGTCCCAAAC
26699941 ATGGTCTTACACATAAACACAT
1 ATGGTCTTACACATAAACACAT
26699963 CTTGTCAATC
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 53 0.96
44 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACATAAACACATAATGATGCCAATGTCCCAAAC
Found at i:26707107 original size:43 final size:42
Alignment explanation
Indices: 26707017--26707113 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 42
26707007 TAAGATTACG
* * *
26707017 TGTAAGACCATATCTGGCTTATGGCATCGATATGAGACTTCT
1 TGTAAGACCATAGCTGGCTTATGGCATCGATACGAGACTTCA
*
26707059 TGTAAGACCATAGCTGGGC-TATTGGCA-CTGATACGAGATTTCA
1 TGTAAGACCATAGCT-GGCTTA-TGGCATC-GATACGAGACTTCA
26707102 TGTAAGACCATA
1 TGTAAGACCATA
26707114 TATGGGATAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
42 17 0.35
43 31 0.65
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATAGCTGGCTTATGGCATCGATACGAGACTTCA
Found at i:26715615 original size:69 final size:69
Alignment explanation
Indices: 26715504--26715645 Score: 275
Period size: 69 Copynumber: 2.1 Consensus size: 69
26715494 TGAAATTCGG
*
26715504 CCAAGGTAAAAGATGATGGACAAAATTTTGACTTGATTTTCCCTTTTTATTCTTTTATTTACCAA
1 CCAAGGTAAAAGATAATGGACAAAATTTTGACTTGATTTTCCCTTTTTATTCTTTTATTTACCAA
26715569 ATGA
66 ATGA
26715573 CCAAGGTAAAAGATAATGGACAAAATTTTGACTTGATTTTCCCTTTTTATTCTTTTATTTACCAA
1 CCAAGGTAAAAGATAATGGACAAAATTTTGACTTGATTTTCCCTTTTTATTCTTTTATTTACCAA
26715638 ATGA
66 ATGA
26715642 CCAA
1 CCAA
26715646 AATGTCCTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 72 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.39
Consensus pattern (69 bp):
CCAAGGTAAAAGATAATGGACAAAATTTTGACTTGATTTTCCCTTTTTATTCTTTTATTTACCAA
ATGA
Found at i:26720118 original size:43 final size:43
Alignment explanation
Indices: 26720083--26720225 Score: 161
Period size: 43 Copynumber: 3.3 Consensus size: 43
26720073 CCAATGTACT
26720083 AGACGTGGTCTTACATGTAATCAAATATCGATGCC-ACTGTCCC
1 AGACGTGGTCTTACATGTAATCAAATATCGATGCCAAC-GTCCC
** * * *
26720126 AGACAAGGTCTTACACGAAATCAAGTA-CGATGCCAACG-CCC
1 AGACGTGGTCTTACATGTAATCAAATATCGATGCCAACGTCCC
26720167 AGACGTGGTCTTACATGTAAATCATAAGT-T-GATGCCAACGTCCC
1 AGACGTGGTCTTACATGT-AATCA-AA-TATCGATGCCAACGTCCC
*
26720211 AGATGTGGTCTTACA
1 AGACGTGGTCTTACA
26720226 CGATAACACA
Statistics
Matches: 83, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
41 17 0.20
42 13 0.16
43 35 0.42
44 18 0.22
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (43 bp):
AGACGTGGTCTTACATGTAATCAAATATCGATGCCAACGTCCC
Found at i:26727642 original size:42 final size:42
Alignment explanation
Indices: 26727578--26727689 Score: 129
Period size: 42 Copynumber: 2.7 Consensus size: 42
26727568 AGCTCGTACA
* * ** *
26727578 ATGCCAACGTCCCAGATGTGGTCTTACATGTAATC-AATATCG
1 ATGCCAACATCCCAAACATGGTCTTACATGAAATCAAATA-CG
26727620 ATGCC-ACTATCCCAAACATGGTCTTACATGAAATCAAATACG
1 ATGCCAAC-ATCCCAAACATGGTCTTACATGAAATCAAATACG
* *
26727662 ATGCCAACATCCCAGACGTGGTCTTACA
1 ATGCCAACATCCCAAACATGGTCTTACA
26727690 CGATAGCACA
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.03
42 52 0.87
43 6 0.10
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (42 bp):
ATGCCAACATCCCAAACATGGTCTTACATGAAATCAAATACG
Found at i:26735618 original size:41 final size:41
Alignment explanation
Indices: 26735569--26735672 Score: 104
Period size: 41 Copynumber: 2.5 Consensus size: 41
26735559 CCTATATCAC
* * *
26735569 ACACCGGCACAAGGCCTGCTAGAC-TCAAAGTCTGATTTTAT
1 ACACCGGCACAAGGCCTGCTAGACAT-AAAGCCCGATTTAAT
* *
26735610 ACACCGGCA-ATAAGCCTGCTAGGCATAAAGCCCGATTTAAT
1 ACACCGGCACA-AGGCCTGCTAGACATAAAGCCCGATTTAAT
* * *
26735651 TCACCAGCACAAGGCTTGCTAG
1 ACACCGGCACAAGGCCTGCTAG
26735673 GTTGAAAGCC
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
40 1 0.02
41 48 0.94
42 2 0.04
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (41 bp):
ACACCGGCACAAGGCCTGCTAGACATAAAGCCCGATTTAAT
Found at i:26745724 original size:26 final size:24
Alignment explanation
Indices: 26745694--26745743 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
26745684 TTTGGTGAAC
26745694 ATATATATAAGGTTATAGTATGGTTA
1 ATATATATAAGG-T-TAGTATGGTTA
* *
26745720 ATATATGTATGGTTAGTATGGTTA
1 ATATATATAAGGTTAGTATGGTTA
26745744 GATTGAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 11 0.50
25 1 0.05
26 10 0.45
ACGTcount: A:0.34, C:0.00, G:0.22, T:0.44
Consensus pattern (24 bp):
ATATATATAAGGTTAGTATGGTTA
Found at i:26748222 original size:13 final size:13
Alignment explanation
Indices: 26748204--26748245 Score: 84
Period size: 13 Copynumber: 3.2 Consensus size: 13
26748194 AATTTAAGTT
26748204 CTTTGAATTATTA
1 CTTTGAATTATTA
26748217 CTTTGAATTATTA
1 CTTTGAATTATTA
26748230 CTTTGAATTATTA
1 CTTTGAATTATTA
26748243 CTT
1 CTT
26748246 AATTAATTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.29, C:0.10, G:0.07, T:0.55
Consensus pattern (13 bp):
CTTTGAATTATTA
Found at i:26750299 original size:20 final size:20
Alignment explanation
Indices: 26750270--26750316 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
26750260 TCACATAGCA
*
26750270 TATACATTGAGGTCACATTT
1 TATACATTGAGCTCACATTT
*
26750290 TATACGTTGAGCTCACATTT
1 TATACATTGAGCTCACATTT
26750310 TATACAT
1 TATACAT
26750317 ACCAATTAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (20 bp):
TATACATTGAGCTCACATTT
Found at i:26752796 original size:26 final size:28
Alignment explanation
Indices: 26752765--26752821 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 28
26752755 TTAATTAAAC
26752765 GATAATA-TT-TTTTTATATGTAATTAT
1 GATAATATTTATTTTTATATGTAATTAT
26752791 GATAATATTTTATTTTTATATGTAATTAT
1 GATAATA-TTTATTTTTATATGTAATTAT
26752820 GA
1 GA
26752822 AAAATAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 7 0.25
28 2 0.07
29 19 0.68
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (28 bp):
GATAATATTTATTTTTATATGTAATTAT
Found at i:26758530 original size:3 final size:3
Alignment explanation
Indices: 26758522--26758570 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
26758512 TGCAGGACTT
26758522 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26758570 T
1 T
26758571 CATCTTTGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:26760690 original size:22 final size:22
Alignment explanation
Indices: 26760665--26760708 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
26760655 TGGAGTCTAA
26760665 AAACTCTATTAAAACTTTGCTC
1 AAACTCTATTAAAACTTTGCTC
26760687 AAACTCTATTAAAACTTTGCTC
1 AAACTCTATTAAAACTTTGCTC
26760709 GATAGAGTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (22 bp):
AAACTCTATTAAAACTTTGCTC
Found at i:26761803 original size:22 final size:21
Alignment explanation
Indices: 26761757--26761804 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 21
26761747 TGATATGCTT
*
26761757 AAAAAACTATTTACAAATATT
1 AAAAAACTATTTACAAATATG
26761778 AAAAAACTATTTACAAATATAG
1 AAAAAACTATTTACAAATAT-G
26761800 AAAAA
1 AAAAA
26761805 TGAGATTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.62, C:0.08, G:0.02, T:0.27
Consensus pattern (21 bp):
AAAAAACTATTTACAAATATG
Found at i:26761804 original size:21 final size:21
Alignment explanation
Indices: 26761755--26761797 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
26761745 TTTGATATGC
26761755 TTAAAAAACTATTTACAAATA
1 TTAAAAAACTATTTACAAATA
26761776 TTAAAAAACTATTTACAAATA
1 TTAAAAAACTATTTACAAATA
26761797 T
1 T
26761798 AGAAAAATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (21 bp):
TTAAAAAACTATTTACAAATA
Found at i:26773294 original size:30 final size:30
Alignment explanation
Indices: 26773260--26773322 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
26773250 ACTTATTTTA
*
26773260 TTGTTAATTTTGTTATTATTTTAAAGATAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
26773290 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
26773320 TTG
1 TTG
26773323 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:26773724 original size:18 final size:17
Alignment explanation
Indices: 26773701--26773739 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
26773691 TAATCATGTT
26773701 TCAATATATTTATTTATA
1 TCAA-ATATTTATTTATA
*
26773719 TC-AATATTTATTTTTA
1 TCAAATATTTATTTATA
26773735 TCAAA
1 TCAAA
26773740 CTTCATAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 14 0.74
17 3 0.16
18 2 0.11
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (17 bp):
TCAAATATTTATTTATA
Found at i:26773727 original size:16 final size:16
Alignment explanation
Indices: 26773706--26773738 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
26773696 ATGTTTCAAT
26773706 ATATTTATTTATATCA
1 ATATTTATTTATATCA
*
26773722 ATATTTATTTTTATCA
1 ATATTTATTTATATCA
26773738 A
1 A
26773739 ACTTCATAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (16 bp):
ATATTTATTTATATCA
Found at i:26787311 original size:5 final size:5
Alignment explanation
Indices: 26787301--26787325 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26787291 TTTTCCTTCT
26787301 GTTTC GTTTC GTTTC GTTTC GTTTC
1 GTTTC GTTTC GTTTC GTTTC GTTTC
26787326 TTTTTCTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.20, T:0.60
Consensus pattern (5 bp):
GTTTC
Found at i:26796822 original size:14 final size:14
Alignment explanation
Indices: 26796803--26796831 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26796793 CACAAATAAG
26796803 TAAATTCTGAAAAC
1 TAAATTCTGAAAAC
26796817 TAAATTCTGAAAAC
1 TAAATTCTGAAAAC
26796831 T
1 T
26796832 TTGTTAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.14, G:0.07, T:0.31
Consensus pattern (14 bp):
TAAATTCTGAAAAC
Found at i:26798738 original size:6 final size:6
Alignment explanation
Indices: 26798727--26798779 Score: 97
Period size: 6 Copynumber: 8.8 Consensus size: 6
26798717 AACGCATATA
*
26798727 AGAAGG AGAAGG AGAAGG AGAAGA AGAAGG AGAAGG AGAAGG AGAAGG
1 AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG
26798775 AGAAG
1 AGAAG
26798780 CCATTTGTGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (6 bp):
AGAAGG
Found at i:26799756 original size:14 final size:14
Alignment explanation
Indices: 26799737--26799765 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26799727 AAATGAATTA
26799737 TGTAATATATTATT
1 TGTAATATATTATT
26799751 TGTAATATATTATT
1 TGTAATATATTATT
26799765 T
1 T
26799766 ATAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TGTAATATATTATT
Found at i:26800837 original size:32 final size:33
Alignment explanation
Indices: 26800783--26800846 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
26800773 AAATCTTAGA
* *
26800783 ATATATATTATAAAAAATAATTTGTA-TATTTT
1 ATATATATTATAAAAAAAAATTTATATTATTTT
26800815 ATATAT-TTATAACAAAAAAATTTATATTATTT
1 ATATATATTATAA-AAAAAAATTTATATTATTT
26800847 AAATCCTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 6 0.21
32 17 0.61
33 5 0.18
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (33 bp):
ATATATATTATAAAAAAAAATTTATATTATTTT
Found at i:26803771 original size:15 final size:15
Alignment explanation
Indices: 26803751--26803783 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
26803741 TTGGGCCAAC
26803751 CAGGCTTCAATCCGA
1 CAGGCTTCAATCCGA
26803766 CAGGCTTCAATCCGA
1 CAGGCTTCAATCCGA
26803781 CAG
1 CAG
26803784 TTCATTGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.33, G:0.21, T:0.18
Consensus pattern (15 bp):
CAGGCTTCAATCCGA
Found at i:26809605 original size:30 final size:30
Alignment explanation
Indices: 26809569--26809628 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
26809559 TTCCCGAGCC
*
26809569 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
26809599 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
26809629 CATATTAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:26811612 original size:42 final size:43
Alignment explanation
Indices: 26811564--26811669 Score: 121
Period size: 44 Copynumber: 2.5 Consensus size: 43
26811554 TGCCACTCTT
26811564 CCAGACAGGGTCTTACAC-AAAATCA-AA-TACGATGCCAACGTC
1 CCAGACAGGGTCTTACACGAAAA-CATAAGT-CGATGCCAACGTC
* *
26811606 CCAGACATGGTCTTATACGTAAAACATAAGTCGATGCCAACGTC
1 CCAGACAGGGTCTTACACG-AAAACATAAGTCGATGCCAACGTC
*
26811650 CTAGAC-GTGGTCTTACACGA
1 CCAGACAG-GGTCTTACACGA
26811670 TGGCACATAT
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
42 16 0.30
43 3 0.06
44 34 0.63
45 1 0.02
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (43 bp):
CCAGACAGGGTCTTACACGAAAACATAAGTCGATGCCAACGTC
Found at i:26823439 original size:28 final size:28
Alignment explanation
Indices: 26823368--26823466 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
26823358 ATAATAAGCC
*
26823368 CGCACACTTAGTGCT-TAATAGTCGAACT
1 CGCACACTTAGTGCTAT-ATAATCGAACT
26823396 CGCACACTTAGTGCTATATAATC-AACCT
1 CGCACACTTAGTGCTATATAATCGAA-CT
* * * *
26823424 CGCACACTTAATGCTATACAATTTGAACC
1 CGCACACTTAGTGCTATATAA-TCGAACT
*
26823453 CGTACACTTAGTGC
1 CGCACACTTAGTGC
26823467 CAATCTCATG
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 41 0.68
29 15 0.25
30 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCGAACT
Found at i:26825718 original size:20 final size:19
Alignment explanation
Indices: 26825671--26825719 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
26825661 TTTATTGAAA
*
26825671 ATGAATCAATATATATGTT
1 ATGAAACAATATATATGTT
* * *
26825690 ATTATACAATTTATCATGTT
1 ATGAAACAATATAT-ATGTT
26825710 ATGAAACAAT
1 ATGAAACAAT
26825720 GTAAATCCAA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (19 bp):
ATGAAACAATATATATGTT
Found at i:26826013 original size:21 final size:21
Alignment explanation
Indices: 26825989--26826032 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
26825979 ATAACAATTA
* *
26825989 TGTGAGTTAGTACACTTTGTG
1 TGTGAGTTAGCACACTCTGTG
26826010 TGTGAGTTAGCACACTCTGTG
1 TGTGAGTTAGCACACTCTGTG
26826031 TG
1 TG
26826033 AGCTATCCCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.18, C:0.14, G:0.30, T:0.39
Consensus pattern (21 bp):
TGTGAGTTAGCACACTCTGTG
Found at i:26832449 original size:40 final size:40
Alignment explanation
Indices: 26832391--26832477 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
26832381 AATGAAAAGC
** * * *
26832391 GCCGCTAAAGAATGAGCATTAGTGGCGCTTT-TCCAAAAAT
1 GCCGCTAAAGAACAAGCATTAGCGGCACTTTCT-AAAAAAT
26832431 GCCGCTAAAGAACAAGCATTAGCGGCACTTTCTAAAAAAT
1 GCCGCTAAAGAACAAGCATTAGCGGCACTTTCTAAAAAAT
26832471 GCCGCTA
1 GCCGCTA
26832478 TAGGTTCACC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
40 40 0.98
41 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (40 bp):
GCCGCTAAAGAACAAGCATTAGCGGCACTTTCTAAAAAAT
Found at i:26833237 original size:15 final size:15
Alignment explanation
Indices: 26833217--26833268 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
26833207 TTTAAGGTTC
*
26833217 AGGGATTATATGTTT
1 AGGGATTATAAGTTT
**
26833232 AGGGATTATGGGTTT
1 AGGGATTATAAGTTT
*
26833247 AGGGTTTA-AAGTTT
1 AGGGATTATAAGTTT
26833261 AGGGATTA
1 AGGGATTA
26833269 GTGGGTAGGG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
14 11 0.35
15 20 0.65
ACGTcount: A:0.27, C:0.00, G:0.33, T:0.40
Consensus pattern (15 bp):
AGGGATTATAAGTTT
Done.