Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 85 of 325
Found at i:27098090 original size:79 final size:80
Alignment explanation
Indices: 27097903--27098105 Score: 204
Period size: 78 Copynumber: 2.6 Consensus size: 80
27097893 ACACTAAGAT
** * * *
27097903 CCGAAGGCATTTGTGCGAGAT-ACTAATTTCGGGCTAAG-CCCGAA-GCATTGGTGCGAGTTACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACT
*
27097965 AAATCCGGGTTAAGTC
65 AAATCCGGGCTAAGTC
** * *
27097981 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA
*
27098046 TAA-CCGGGCTATGT-
66 -AATCCGGGCTAAGTC
* * *
27098060 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
27098106 TACGTGATTT
Statistics
Matches: 108, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
77 1 0.01
78 48 0.44
79 30 0.28
80 27 0.25
81 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA
AATCCGGGCTAAGTC
Found at i:27102234 original size:30 final size:29
Alignment explanation
Indices: 27102198--27102258 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 29
27102188 AAACGGAAGT
27102198 TTTGGCACTAAGTGTGCAATTTAAACTAGC
1 TTTGGCACTAAGTGTGCAATTT-AACTAGC
**
27102228 TTTGGCACTAAGTGTGGGATTTAACTAGC
1 TTTGGCACTAAGTGTGCAATTTAACTAGC
27102257 TT
1 TT
27102259 CGGCTACTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.31
30 20 0.69
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCAATTTAACTAGC
Found at i:27110355 original size:8 final size:7
Alignment explanation
Indices: 27110336--27110373 Score: 58
Period size: 7 Copynumber: 5.1 Consensus size: 7
27110326 TAGTGTATAG
27110336 TAAAAAA
1 TAAAAAA
27110343 TAAAAAA
1 TAAAAAA
27110350 TAAAAAA
1 TAAAAAA
27110357 TAAAAATA
1 TAAAAA-A
27110365 TAAACAAA
1 TAAA-AAA
27110373 T
1 T
27110374 GTATCACTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 20 0.69
8 7 0.24
9 2 0.07
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (7 bp):
TAAAAAA
Found at i:27110836 original size:54 final size:54
Alignment explanation
Indices: 27110771--27110883 Score: 199
Period size: 54 Copynumber: 2.1 Consensus size: 54
27110761 ATCTTTTGTA
*
27110771 CTCTTCATTCTTTTGTCATTATAGTAAAATTATCTTTGCCTGTGATTTTTTATC
1 CTCTTCATTCTTTTGCCATTATAGTAAAATTATCTTTGCCTGTGATTTTTTATC
* *
27110825 CTCTTCGTTCTTTTGCCATTATAGTAAAATTATCTTTGTCTGTGATTTTTTATC
1 CTCTTCATTCTTTTGCCATTATAGTAAAATTATCTTTGCCTGTGATTTTTTATC
27110879 CTCTT
1 CTCTT
27110884 TGGAGGGGTT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.19, C:0.18, G:0.10, T:0.54
Consensus pattern (54 bp):
CTCTTCATTCTTTTGCCATTATAGTAAAATTATCTTTGCCTGTGATTTTTTATC
Found at i:27115976 original size:23 final size:23
Alignment explanation
Indices: 27115950--27116055 Score: 108
Period size: 23 Copynumber: 4.6 Consensus size: 23
27115940 ATAGCTCATA
*
27115950 AGAGCTTACTGTTTCAACTCACT
1 AGAGCTTACTGTTTCAACTCAAT
*** * *
27115973 AGAGCTTACCAATTCAGCTCAAA
1 AGAGCTTACTGTTTCAACTCAAT
*
27115996 AGAACTTACTG-TTCAACTCAAT
1 AGAGCTTACTGTTTCAACTCAAT
*
27116018 AGAGCTTACCAT-TTTCAACTTAAT
1 AGAGCTTA-C-TGTTTCAACTCAAT
27116042 AGAGCTTACTGTTT
1 AGAGCTTACTGTTT
27116056 ATCAGCTCAT
Statistics
Matches: 66, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
22 17 0.26
23 30 0.45
24 19 0.29
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAACTCAAT
Found at i:27116050 original size:46 final size:45
Alignment explanation
Indices: 27115944--27116054 Score: 141
Period size: 46 Copynumber: 2.4 Consensus size: 45
27115934 CTCACCATAG
* * *
27115944 CTCATAAGAGCTTACTGTTTCAACTCACTAGAGCTTACCAATTCAG
1 CTCAAAAGAGCTTACTG-TTCAACTCAATAGAGCTTACCAATTCAA
* *
27115990 CTCAAAAGAACTTACTGTTCAACTCAATAGAGCTTACCATTTTCAA
1 CTCAAAAGAGCTTACTGTTCAACTCAATAGAGCTTACCA-ATTCAA
* *
27116036 CTTAATAGAGCTTACTGTT
1 CTCAAAAGAGCTTACTGTT
27116055 TATCAGCTCA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
45 21 0.38
46 35 0.62
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.32
Consensus pattern (45 bp):
CTCAAAAGAGCTTACTGTTCAACTCAATAGAGCTTACCAATTCAA
Found at i:27126456 original size:40 final size:40
Alignment explanation
Indices: 27126401--27126622 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
27126391 TATTCGAATG
*
27126401 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
27126441 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
27126481 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
27126521 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
27126561 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
27126601 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
27126623 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.08
40 152 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:27132340 original size:40 final size:40
Alignment explanation
Indices: 27132261--27132441 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
27132251 TATTCGAATG
*
27132261 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
27132300 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
27132340 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
27132380 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
27132420 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
27132442 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 37 0.28
40 91 0.69
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:27136212 original size:184 final size:183
Alignment explanation
Indices: 27135976--27136343 Score: 673
Period size: 184 Copynumber: 2.0 Consensus size: 183
27135966 TATAGTGATG
* *
27135976 TTGTGACAGCCCTAAAGTGACCCTAGTCAGAAAGCGGTTTTGGGACCGCTAAACCGAGTCACCAA
1 TTGTGACAGCCCTAAAATGACCCTAGTCAGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAA
27136041 ATTATTTGAATATGATATTTATTGTCTAAAATATGTGAATATGAATGTGTGAAAGTTTTAAGCTT
66 ATTATTTGAATATGATATTTATTGTCTAAAATATGTGAATATGAATGTGTGAAAGTTTTAAGCTT
27136106 CGATTTAGTAAATTGCATGTGAATTTAGTCAATAGGACTTATGTGTGACACTTT
131 CGATTTAGTAAATTGCATGTGAATTTAGT-AATAGGACTTATGTGTGACACTTT
* *
27136160 TTGTGACAGCCGTAAAATGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAA
1 TTGTGACAGCCCTAAAATGACCCTAGTCAGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAA
27136225 ATTATTTGAATATGATATTTATTGTCTAAAATATGTGAATATGAATGTGTGAAAGTTTTAAGCTT
66 ATTATTTGAATATGATATTTATTGTCTAAAATATGTGAATATGAATGTGTGAAAGTTTTAAGCTT
**
27136290 CGATTTAGTCGATTGCATGTGAATTTAGTAATAGGACTTATGTGTGACACTTT
131 CGATTTAGTAAATTGCATGTGAATTTAGTAATAGGACTTATGTGTGACACTTT
27136343 T
1 T
27136344 GAAATGTGAT
Statistics
Matches: 178, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
183 25 0.14
184 153 0.86
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (183 bp):
TTGTGACAGCCCTAAAATGACCCTAGTCAGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAA
ATTATTTGAATATGATATTTATTGTCTAAAATATGTGAATATGAATGTGTGAAAGTTTTAAGCTT
CGATTTAGTAAATTGCATGTGAATTTAGTAATAGGACTTATGTGTGACACTTT
Found at i:27138826 original size:47 final size:47
Alignment explanation
Indices: 27138772--27139082 Score: 514
Period size: 47 Copynumber: 6.6 Consensus size: 47
27138762 TATTTGAATA
27138772 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
27138819 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27138866 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
27138915 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27138962 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
27139009 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
27139056 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
27139083 TCCCGAAGGG
Statistics
Matches: 248, Mismatches: 14, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 203 0.82
49 45 0.18
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:27138954 original size:143 final size:141
Alignment explanation
Indices: 27138772--27139082 Score: 514
Period size: 143 Copynumber: 2.2 Consensus size: 141
27138762 TATTTGAATA
*
27138772 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
*
27138837 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAAT
* *
27138902 GGCCGATGTGATG
129 GGCCAACGTGATG
27138915 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
* * * *
27138980 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
27139045 CCAACGTGATG
131 CCAACGTGATG
* *
27139056 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
27139083 TCCCGAAGGG
Statistics
Matches: 158, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
141 55 0.35
143 103 0.65
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCAACGTGATG
Found at i:27141579 original size:40 final size:40
Alignment explanation
Indices: 27141524--27141707 Score: 318
Period size: 40 Copynumber: 4.6 Consensus size: 40
27141514 CGGATGATAA
* *
27141524 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
27141564 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
27141604 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
27141643 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
27141683 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
27141708 AGCAAGTAGT
Statistics
Matches: 139, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
39 39 0.28
40 99 0.71
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:27141656 original size:79 final size:80
Alignment explanation
Indices: 27141520--27141707 Score: 326
Period size: 79 Copynumber: 2.4 Consensus size: 80
27141510 TATTCGGATG
*
27141520 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCA
27141585 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* *
27141600 AT-ATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGC
27141663 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
27141679 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
27141708 AGCAAGTAGT
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
78 2 0.02
79 73 0.72
80 27 0.26
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:27141729 original size:79 final size:80
Alignment explanation
Indices: 27141520--27141739 Score: 315
Period size: 79 Copynumber: 2.8 Consensus size: 80
27141510 TATTCGGATG
*
27141520 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATATT-CGGGCTAAGTCCCGAAGG
27141583 CATTTGTGCGAGTTACT
64 CATTTGTGCGAGTTACT
* * *
27141600 AT-ATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATTCGGGCTAAGTCCCGAAGGC
27141663 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* * *
27141679 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATTC-GGCTAAATCCCGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATTCGGGCTAAGTCCCGAAG
27141740 ATGCTTGGGT
Statistics
Matches: 126, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
79 86 0.68
80 40 0.32
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATTCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:27141736 original size:119 final size:119
Alignment explanation
Indices: 27141524--27141739 Score: 323
Period size: 119 Copynumber: 1.8 Consensus size: 119
27141514 CGGATGATAA
* *
27141524 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCATTTG
* *
27141589 TGCGAGTTACTATATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
66 AGCGAGTTACTATATCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAT
*
27141643 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGGCATTT
27141707 GAGCAAGTAGTTA-TAT-TC-GGCTAAATCCCGAAG
65 GAGC--G-AGTTACTATATCGGGCTAAATCCCGAAG
27141740 ATGCTTGGGT
Statistics
Matches: 88, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
118 2 0.02
119 75 0.85
120 2 0.02
121 4 0.05
122 5 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCATTTG
AGCGAGTTACTATATCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:27142005 original size:22 final size:21
Alignment explanation
Indices: 27141964--27142007 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
27141954 GAATGTGCAT
27141964 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
27141986 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
27142008 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:27149608 original size:40 final size:40
Alignment explanation
Indices: 27149511--27149654 Score: 236
Period size: 40 Copynumber: 3.6 Consensus size: 40
27149501 CGGATGATAA
* *
27149511 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
27149550 TCTGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
27149590 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
27149630 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
27149655 AGCAAGTAGT
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 33 0.34
40 64 0.66
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:27149676 original size:79 final size:79
Alignment explanation
Indices: 27149511--27149686 Score: 230
Period size: 79 Copynumber: 2.2 Consensus size: 79
27149501 CGGATGATAA
* ** * *
27149511 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCTGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCGGGCTAAGTCCCGAAGGCATTTGA
*
27149576 GCGAGTTACTATAT
66 GCAAGTTACTATAT
*
27149590 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTA-AACCGGGCTAAGTCCCGAAGGCATTTG
*
27149655 AGCAAG-TAGTTATAT
65 AGCAAGTTA-CTATAT
* *
27149670 TC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
27149687 ATGCTTGGGT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 51 0.60
80 34 0.40
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCGGGCTAAGTCCCGAAGGCATTTGA
GCAAGTTACTATAT
Found at i:27149954 original size:22 final size:21
Alignment explanation
Indices: 27149913--27149956 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
27149903 GAATGTGCAT
27149913 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
27149935 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
27149957 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:27154218 original size:23 final size:22
Alignment explanation
Indices: 27154192--27154281 Score: 92
Period size: 24 Copynumber: 4.0 Consensus size: 22
27154182 TTATTATTTT
* *
27154192 AGCTCACTGGAGCTTACTGATTC
1 AGCTCAATAGAGCTTACTG-TTC
*
27154215 AGCTCGAA-AGAGCTTACTGTTT
1 AGCTC-AATAGAGCTTACTGTTC
*
27154237 AGCTCAATAGAGCTTACCGTTTTC
1 AGCTCAATAGAGCTTA-C-TGTTC
*
27154261 AGCTCAATAGAGCTTATTGTT
1 AGCTCAATAGAGCTTACTGTT
27154282 TATCAGCTCA
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
21 2 0.04
22 18 0.32
23 16 0.29
24 20 0.36
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (22 bp):
AGCTCAATAGAGCTTACTGTTC
Found at i:27154250 original size:45 final size:46
Alignment explanation
Indices: 27154189--27154283 Score: 122
Period size: 46 Copynumber: 2.1 Consensus size: 46
27154179 AGCTTATTAT
* * *
27154189 TTTAGCTCACTGGAGCTTACTG-ATTCAGCTCGAA-AGAGCTTACTG
1 TTTAGCTCAATAGAGCTTACCGTATTCAGCTC-AATAGAGCTTACTG
* *
27154234 TTTAGCTCAATAGAGCTTACCGTTTTCAGCTCAATAGAGCTTATTG
1 TTTAGCTCAATAGAGCTTACCGTATTCAGCTCAATAGAGCTTACTG
27154280 TTTA
1 TTTA
27154284 TCAGCTCATA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
45 21 0.49
46 22 0.51
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (46 bp):
TTTAGCTCAATAGAGCTTACCGTATTCAGCTCAATAGAGCTTACTG
Found at i:27154262 original size:46 final size:45
Alignment explanation
Indices: 27154189--27154306 Score: 121
Period size: 45 Copynumber: 2.5 Consensus size: 45
27154179 AGCTTATTAT
* * *
27154189 TTTAGCTCACTGGAGCTTACTGATTCAGCTCGAA-AGAGCTTACTG
1 TTTAGCTCAATAGAGCTTACCGATTCAGCTC-AATAGAGCTTACTG
* *
27154234 TTTAGCTCAATAGAGCTTACCGTTTTCAGCTCAATAGAGCTTATTG
1 TTTAGCTCAATAGAGCTTACCG-ATTCAGCTCAATAGAGCTTACTG
*
27154280 TTTATCAGCTCATAAAGAGCTTACCGA
1 -TT-T-AGCTCA-ATAGAGCTTACCGA
27154307 CCATGTCTTG
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
45 21 0.35
46 18 0.30
47 2 0.03
48 1 0.02
49 6 0.10
50 12 0.20
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (45 bp):
TTTAGCTCAATAGAGCTTACCGATTCAGCTCAATAGAGCTTACTG
Found at i:27154269 original size:24 final size:24
Alignment explanation
Indices: 27154212--27154305 Score: 104
Period size: 24 Copynumber: 3.9 Consensus size: 24
27154202 AGCTTACTGA
*
27154212 TTCAGCTCGAA-AGAGCTTACTG-T
1 TTCAGCTC-AATAGAGCTTACCGTT
27154235 TT-AGCTCAATAGAGCTTACCGTT
1 TTCAGCTCAATAGAGCTTACCGTT
**
27154258 TTCAGCTCAATAGAGCTTATTGTT
1 TTCAGCTCAATAGAGCTTACCGTT
*
27154282 TATCAGCTCATAAAGAGCTTACCG
1 T-TCAGCTCA-ATAGAGCTTACCG
27154306 ACCATGTCTT
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
21 2 0.03
22 15 0.25
23 5 0.08
24 20 0.33
25 8 0.13
26 10 0.17
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (24 bp):
TTCAGCTCAATAGAGCTTACCGTT
Found at i:27156898 original size:47 final size:47
Alignment explanation
Indices: 27156847--27157339 Score: 797
Period size: 47 Copynumber: 10.4 Consensus size: 47
27156837 TTGTGATGTG
27156847 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
27156894 AGTGTATATATGTGATACGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
27156941 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27156988 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
27157037 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
27157084 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
27157131 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27157180 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
27157227 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * *
27157274 AGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
27157321 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
27157340 TCCTGAAGGG
Statistics
Matches: 418, Mismatches: 24, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 329 0.79
49 89 0.21
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:27157062 original size:143 final size:143
Alignment explanation
Indices: 27156851--27157339 Score: 874
Period size: 143 Copynumber: 3.4 Consensus size: 143
27156841 GATGTGAGTG
*
27156851 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATACGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
27156916 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
27156981 ATGTGAAAGTGTA
131 ATGTGAAAGTGTA
27156994 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
27157059 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
27157124 ATGTGAAAGTGTA
131 ATGTGAAAGTGTA
*
27157137 TATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
27157202 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
27157267 ATGTGAAAGTG--
131 ATGTGAAAGTGTA
* * * * * * *
27157278 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
27157340 TCCTGAAGGG
Statistics
Matches: 335, Mismatches: 11, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
141 54 0.16
143 281 0.84
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
ATGTGAAAGTGTA
Found at i:27157129 original size:190 final size:188
Alignment explanation
Indices: 27156847--27157339 Score: 815
Period size: 190 Copynumber: 2.6 Consensus size: 188
27156837 TTGTGATGTG
*
27156847 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAC
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * *
27156912 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
66 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
27156977 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
131 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
27157037 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
27157102 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
66 GGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATG
*
27157167 TGGTGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
129 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
27157227 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAG
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * *
27157292 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
27157340 TCCTGAAGGG
Statistics
Matches: 285, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
188 14 0.05
190 227 0.80
192 44 0.15
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (188 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:27157514 original size:37 final size:37
Alignment explanation
Indices: 27157458--27157536 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27157448 CCGAGCTCTA
* * *
27157458 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
27157495 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
27157532 AAGAC
1 AAGAC
27157537 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:27161643 original size:50 final size:50
Alignment explanation
Indices: 27161578--27162021 Score: 503
Period size: 50 Copynumber: 8.8 Consensus size: 50
27161568 ACCGAAGCTC
* * * *
27161578 TCTGGTACGCATAGTAGCCTGCACTTAGTAATACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
27161628 TCTGGTACACGTAGTAGCCTGCA-TTAGTACTACACATGTGACCTAGCCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * * *
27161677 TCTGATACACGTAGTAGCCTGCACTTAGTATTACACACGTGATCGAAGCTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* * * * *
27161728 TCGGGTACACATAGTAGCCTACACATAGTACTACACATGTGACCTAACAT
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
** *
27161778 TCTGGTACACGTAGTAGCCTGCGTTTAGTACTACACATGTGACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * *
27161828 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* * * * *
27161879 TCAGGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
27161929 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAGAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACAA
* *** * **
27161981 TTTTAAACACATAGTAGCCTGCACAGAGTACTACACATGTG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTG
27162022 TTCTCATAAT
Statistics
Matches: 326, Mismatches: 63, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
49 44 0.13
50 165 0.51
51 80 0.25
52 37 0.11
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:27161763 original size:12 final size:13
Alignment explanation
Indices: 27161733--27161777 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 13
27161723 AGCTATCGGG
27161733 TACACATAGTAGCC
1 TACACATAGTA-CC
27161747 TACACATAGTA-C
1 TACACATAGTACC
27161759 TACACAT-GTGACC
1 TACACATAGT-ACC
27161772 TA-ACAT
1 TACACAT
27161778 TCTGGTACAC
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
11 2 0.07
12 13 0.45
13 3 0.10
14 11 0.38
ACGTcount: A:0.38, C:0.27, G:0.11, T:0.24
Consensus pattern (13 bp):
TACACATAGTACC
Found at i:27161787 original size:101 final size:99
Alignment explanation
Indices: 27161578--27162019 Score: 499
Period size: 101 Copynumber: 4.4 Consensus size: 99
27161568 ACCGAAGCTC
* *
27161578 TCTGGTACGCATAGTAGCCTGCACTTAGTAATACACATGCGACCTAACAATCTGGTACACGTAGT
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGT
* *
27161643 AGCCTGCA-TTAGTACTACACATGTGACCTAGCCA
66 AGCCTGCACTTAGTACTACACACGTGACCTA-ACA
* * * * * * * * * *
27161677 TCTGATACACGTAGTAGCCTGCACTTAGTATTACACACGTGATCGAAGCTATCGGGTACACATAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-CAATCTGGTACACGTAG
* * *
27161742 TAGCCTACACATAGTACTACACATGTGACCTAACA
65 TAGCCTGCACTTAGTACTACACACGTGACCTAACA
* ** * * *
27161777 TTCTGGTACACGTAGTAGCCTGCGTTTAGTACTACACATGTGACCTAACCATCTGATACACGTAG
1 -TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAG
* *
27161842 TAGCCTGCACTTAGTACTACACACGTGATCGAAGCAA
65 TAGCCTGCACTTAGTACTACACACGTGACCTAA-C-A
* * *
27161879 TCAGGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCTAACAATCTGGTACACGTAGT
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGT
27161944 AGCCTGCACTTAGTACTACACACGTGACCTAGAACCA
66 AGCCTGCACTTAGTACTACACACGTGACCT--AA-CA
* *** **
27161981 TTTTAAACACATAGTAGCCTGCACAGAGTACTACACATG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATG
27162020 TGTTCTCATA
Statistics
Matches: 285, Mismatches: 51, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
99 39 0.14
100 65 0.23
101 146 0.51
102 32 0.11
103 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (99 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGT
AGCCTGCACTTAGTACTACACACGTGACCTAACA
Found at i:27161870 original size:151 final size:150
Alignment explanation
Indices: 27161570--27162017 Score: 671
Period size: 151 Copynumber: 3.0 Consensus size: 150
27161560 CCCTTGTAAC
* * *
27161570 CGAAGCTCTCTGGTACGCATAGTAGCCTGCACTTAGTAATACACATGCGACCTAACAATCTGGTA
1 CGAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
*
27161635 CACGTAGTAGCCTGCATTAGTACTACACATGTGACCTAGCCATCTGATACACGTAGTAGCCTGCA
66 CACGTAGTAGCCTGCATTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTGCA
*
27161700 CTTAGTATTACACACGTGAT
131 CTTAGTACTACACACGTGAT
* * * * * *
27161720 CGAAGCTATCGGGTACACATAGTAGCCTACACATAGTACTACACATGTGACCTAACATTCTGGTA
1 CGAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
*
27161785 CACGTAGTAGCCTGCGTTTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTGC
66 CACGTAGTAGCCTGC-ATTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTGC
27161850 ACTTAGTACTACACACGTGAT
130 ACTTAGTACTACACACGTGAT
* *
27161871 CGAAGCAATCAGGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCTAACAATCTGGTA
1 CGAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
* * * * *
27161936 CACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAGAACCATTTTAAACACATAGTAGCCT
66 CACGTAGTAGCCTGCA-TTAGTACTACACATGTGACCT--AACCATCTGATACACGTAGTAGCCT
**
27162001 GCACAGAGTACTACACA
128 GCACTTAGTACTACACA
27162018 TGTGTTCTCA
Statistics
Matches: 267, Mismatches: 27, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
150 72 0.27
151 159 0.60
153 36 0.13
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (150 bp):
CGAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
CACGTAGTAGCCTGCATTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTGCA
CTTAGTACTACACACGTGAT
Found at i:27163997 original size:26 final size:26
Alignment explanation
Indices: 27163961--27164011 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
27163951 TGCTTACGCG
* *
27163961 AGTTGTGAAATGGGTCTATTCACACA
1 AGTTGTGAAATAGGCCTATTCACACA
27163987 AGTTGTGAAATAGGCCTATTCACAC
1 AGTTGTGAAATAGGCCTATTCACAC
27164012 TAGCTGTAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
AGTTGTGAAATAGGCCTATTCACACA
Found at i:27165308 original size:21 final size:21
Alignment explanation
Indices: 27165262--27165308 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
27165252 GTATTTAGAT
*
27165262 TTTTAATGATAGATTATGAAG
1 TTTTAATGATAGATTATCAAG
*
27165283 GTTTAATGATAGA-TATACAAG
1 TTTTAATGATAGATTAT-CAAG
27165304 TTTTA
1 TTTTA
27165309 TAAAGTGATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (21 bp):
TTTTAATGATAGATTATCAAG
Found at i:27166037 original size:22 final size:22
Alignment explanation
Indices: 27165970--27166073 Score: 95
Period size: 22 Copynumber: 4.6 Consensus size: 22
27165960 CAACTTATTG
*
27165970 GAGCTTACCGTTTCAGCTCG-TA
1 GAGCTTACTG-TTCAGCTCGATA
* **
27165992 TGAACTTACTGTTCAGCTTAATA
1 -GAGCTTACTGTTCAGCTCGATA
27166015 GAGCTTACTGTTCAGCTCGATA
1 GAGCTTACTGTTCAGCTCGATA
* **
27166037 GAGCTTACCGTTTCAATTC-ATTA
1 GAGCTTACTG-TTCAGCTCGA-TA
27166060 GAGCTTACTGTTCA
1 GAGCTTACTGTTCA
27166074 TCAGCTTAGG
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
22 40 0.60
23 27 0.40
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCGATA
Found at i:27166062 original size:45 final size:43
Alignment explanation
Indices: 27165935--27166073 Score: 145
Period size: 45 Copynumber: 3.1 Consensus size: 43
27165925 TACCGATATA
* *
27165935 TCAGCTCGTAAGAGCTTACTGTTTTCAACTTATTGGAGCTTACCGTT
1 TCAGCTCGT-AGAGCTTACTG-TTTCAA-TTATTAGAGCTTACTG-T
* * *
27165982 TCAGCTCGTATGAACTTACTG-TTCAGCTTAATAGAGCTTACTGT
1 TCAGCTCGTA-GAGCTTACTGTTTCA-ATTATTAGAGCTTACTGT
*
27166026 TCAGCTCGATAGAGCTTACCGTTTCAATTCATTAGAGCTTACTGT
1 TCAGCTCG-TAGAGCTTACTGTTTCAATT-ATTAGAGCTTACTGT
27166071 TCA
1 TCA
27166074 TCAGCTTAGG
Statistics
Matches: 78, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
44 19 0.24
45 40 0.51
46 1 0.01
47 18 0.23
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.37
Consensus pattern (43 bp):
TCAGCTCGTAGAGCTTACTGTTTCAATTATTAGAGCTTACTGT
Found at i:27172685 original size:30 final size:31
Alignment explanation
Indices: 27172649--27172717 Score: 90
Period size: 30 Copynumber: 2.3 Consensus size: 31
27172639 AGTTTATATC
* *
27172649 ATTATTATTTTTAAAGA-ATTAAATTA-AATT
1 ATTATTATTTTT-AAGATATCAAAGTACAATT
27172679 ATTATTATTTTTAAGATATCAAAGTACAATT
1 ATTATTATTTTTAAGATATCAAAGTACAATT
27172710 A-TATTATT
1 ATTATTATT
27172718 ACTAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 4 0.11
30 26 0.74
31 5 0.14
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.49
Consensus pattern (31 bp):
ATTATTATTTTTAAGATATCAAAGTACAATT
Found at i:27175487 original size:22 final size:22
Alignment explanation
Indices: 27175459--27175580 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
27175449 TTCCACATCC
27175459 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
27175481 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
27175505 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
27175528 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
27175552 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
27175575 ATCACA
1 ATCACA
27175581 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:27175494 original size:47 final size:47
Alignment explanation
Indices: 27175431--27175687 Score: 365
Period size: 47 Copynumber: 5.4 Consensus size: 47
27175421 CCCTTCGGGA
* * *
27175431 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
27175478 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
27175525 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
27175572 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
27175619 CTTATCACGCATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
27175668 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
27175688 GTACATCAAT
Statistics
Matches: 192, Mismatches: 14, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
46 1 0.01
47 150 0.78
49 40 0.21
50 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:27180270 original size:48 final size:46
Alignment explanation
Indices: 27180199--27180365 Score: 147
Period size: 46 Copynumber: 3.6 Consensus size: 46
27180189 AATCTGACGC
* * * * *
27180199 CATGTCCCAGATAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TCT-CATCTCAAGGCCGATG
* * * *
27180247 CATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATG
* * ** ***
27180293 CATGTCCCAGACATGTCTTACACTGGCTCTCATAAT-GTGGTTAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCAT-CTCAAGGCCGATG
*
27180339 GATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
27180366 ACACATATCA
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
46 71 0.72
47 3 0.03
48 24 0.24
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATG
Found at i:27180969 original size:20 final size:18
Alignment explanation
Indices: 27180932--27180982 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
27180922 CTATAGAAAC
27180932 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
27180949 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
27180969 TTACAACTTTACAA
1 TCACAA-TTTACAA
27180983 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:27187226 original size:27 final size:27
Alignment explanation
Indices: 27187196--27187256 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
27187186 AAGCAACCGG
*
27187196 CCCAATATGCTCAATAATCTCATACGA
1 CCCAATACGCTCAATAATCTCATACGA
*
27187223 CCCAATACGCTCAATAATCTCATACGG
1 CCCAATACGCTCAATAATCTCATACGA
27187250 CCCAATA
1 CCCAATA
27187257 AATCTCGGAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.36, C:0.33, G:0.08, T:0.23
Consensus pattern (27 bp):
CCCAATACGCTCAATAATCTCATACGA
Found at i:27191790 original size:22 final size:21
Alignment explanation
Indices: 27191749--27191790 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
27191739 ATAACATATT
*
27191749 ATAAACATATCACATACATAG
1 ATAAACATATCAAATACATAG
27191770 ATAACACATTATCAAAT-CATA
1 ATAA-ACA-TATCAAATACATA
27191791 TTCAAAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 4 0.22
22 7 0.39
23 7 0.39
ACGTcount: A:0.52, C:0.19, G:0.02, T:0.26
Consensus pattern (21 bp):
ATAAACATATCAAATACATAG
Found at i:27193260 original size:85 final size:85
Alignment explanation
Indices: 27193101--27193300 Score: 207
Period size: 85 Copynumber: 2.3 Consensus size: 85
27193091 TTGGATAGCT
* * * *
27193101 CGTAAA-CTCATACAATGCCAACGTCCCAGACTAGGTCTTACATGTAATCAAATACCGATGCCAG
1 CGTAAATCTCATACGATGCCAACGTCCCAAACTAGGTCTTACACGTAATCAAATA-CGATGCCAA
*
27193165 TGTCCTAGACAGGGT-TTTACA
65 TGTCCCAGACAGGGTCTTT-CA
27193186 CG-AAATCAT-ATACGATGCCAA-GTCCCAAAC-ATGGTCTTACACGTAAATCTCAAAT-CGATG
1 CGTAAATC-TCATACGATGCCAACGTCCCAAACTA-GGTCTTACACGT-AA--TCAAATACGATG
*
27193246 CCAATGTCCCAGACATGGTCTTTCA
61 CCAATGTCCCAGACAGGGTCTTTCA
* *
27193271 CGTAAATCTCAAATCGATGCCAATGTCCCA
1 CGTAAATCTCATA-CGATGCCAACGTCCCA
27193301 GGCGTGGTCT
Statistics
Matches: 97, Mismatches: 7, Indels: 19
0.79 0.06 0.15
Matches are distributed among these distances:
83 1 0.01
84 22 0.23
85 42 0.43
86 11 0.11
87 15 0.15
88 6 0.06
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (85 bp):
CGTAAATCTCATACGATGCCAACGTCCCAAACTAGGTCTTACACGTAATCAAATACGATGCCAAT
GTCCCAGACAGGGTCTTTCA
Found at i:27193262 original size:44 final size:45
Alignment explanation
Indices: 27193110--27193321 Score: 212
Period size: 44 Copynumber: 4.9 Consensus size: 45
27193100 TCGTAAACTC
* * *
27193110 ATACAATGCCAACGTCCCAGAC-TAGGTCTTACATGT-AA--TCAA
1 ATACGATGCCAATGTCCCAGACAT-GGTCTTACACGTAAATCTCAA
* * * * *
27193152 ATACCGATGCCAGTGTCCTAGACAGGGTTTTACACG-AAA--TCAT
1 ATA-CGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAA
*
27193195 ATACGATGCCAA-GTCCCAAACATGGTCTTACACGTAAATCTCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAA
*
27193239 AT-CGATGCCAATGTCCCAGACATGGTCTTTCACGTAAATCTCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAA
* * *
27193283 AT-CGATGCCAATGTCCCAGGCGTGGTCTAACACG-AAATC
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAATC
27193322 ACATATCGGA
Statistics
Matches: 143, Mismatches: 20, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
41 18 0.13
42 14 0.10
43 46 0.32
44 65 0.45
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (45 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAA
Found at i:27199574 original size:18 final size:19
Alignment explanation
Indices: 27199533--27199575 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
27199523 ATAGAGATTT
*
27199533 TTTTATTATTATAATTAAC
1 TTTTATTAATATAATTAAC
* *
27199552 CTTTATTAAT-TAATTTAC
1 TTTTATTAATATAATTAAC
27199570 TTTTAT
1 TTTTAT
27199576 AACCTTATAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTATTAATATAATTAAC
Found at i:27201480 original size:46 final size:46
Alignment explanation
Indices: 27201403--27201806 Score: 362
Period size: 46 Copynumber: 8.8 Consensus size: 46
27201393 CATTAAGTGG
* * *
27201403 TATGTGAGCCAGTGTAAGACATGTCTGGGACAAGCATCGACCACAT
1 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAT
* *
27201449 TATGAGAGCCAGTGTAAGACATGTCTTGGACATGCGTCGG---CAT
1 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAT
* * * ** * *
27201492 TGAGACGAGAGCTAGTGTAA-ATATGTCTAAGATATGTATCGGCCACAT
1 T---ATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAT
* * * *
27201540 TATGAAAGCTAGTGTATGACATGTCTGGGACATGCATTGGCCACAT
1 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAT
27201586 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATC-G--ACAT
1 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAT
* * * ** * *
27201629 TGAGACGAGAGCTAGTGTAA-ATATGTCTAAGATATGCATCGACCACAT
1 T---ATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAT
* *
27201677 TATGAAAGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACAT
1 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAT
* * * *
27201723 TATGAGAGCCAGTGTAAGAGAAGTTTTGGACATGCATCGG---CAT
1 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAT
** *
27201766 TGAGATGAGAGTTAGTGTAAGACATGTTTGGGACATGCATC
1 T---ATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATC
27201807 AGCCTTGGGA
Statistics
Matches: 288, Mismatches: 53, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
43 13 0.05
45 59 0.20
46 207 0.72
48 9 0.03
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.25
Consensus pattern (46 bp):
TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAT
Found at i:27201593 original size:91 final size:90
Alignment explanation
Indices: 27201408--27201792 Score: 219
Period size: 91 Copynumber: 4.2 Consensus size: 90
27201398 AGTGGTATGT
** * * * *
27201408 GAGCCAGTGTAAGACATGTCTGGGACAAGCATCGACCACATTATGAGAGCCAGTGTAAGACATGT
1 GAGCCAGTGTAAGACATGTCTAAGATATGTATCGACCACATTATGAAAGCCAGTGTAAGACATGT
* *
27201473 CTTGGACATGCGTCGGCATTGAGACGA
66 CTGGGACATGCATCGGCATT--GACGA
* * * * *
27201500 GAGCTAGTGTAA-ATATGTCTAAGATATGTATCGGCCACATTATGAAAGCTAGTGTATGACATGT
1 GAGCCAGTGTAAGACATGTCTAAGATATGTATCGACCACATTATGAAAGCCAGTGTAAGACATGT
* *
27201564 CTGGGACATGCATTGGCCACATT-ATGA
66 CTGGGACATGCATCGG---CATTGACGA
** * * * *
27201591 GAGCCAGTGTAAGACATGTCTGGGACATGCATCG---ACATTGA-GACGAGAGCTAGTGTAA-AT
1 GAGCCAGTGTAAGACATGTCTAAGATATGTATCGACCACATT-ATGA--A-AGCCAGTGTAAGAC
** * * *
27201651 ATGTCTAAGATATGCATCGACCACATT-ATGA
62 ATGTCTGGGACATGCATCG---GCATTGACGA
* ** * * * * * * *
27201682 AAGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGAGAAGT
1 GAGCCAGTGTAAGACATGTCTAAGATATGTATCGACCACATTATGAAAGCCAGTGTAAGACATGT
* * *
27201747 TTTGGACATGCATCGGCATTGAGATGA
66 CTGGGACATGCATCGGCATT--GACGA
**
27201774 GAGTTAGTGTAAGACATGT
1 GAGCCAGTGTAAGACATGT
27201793 TTGGGACATG
Statistics
Matches: 232, Mismatches: 42, Indels: 38
0.74 0.13 0.12
Matches are distributed among these distances:
89 11 0.05
90 1 0.00
91 136 0.59
92 72 0.31
93 1 0.00
94 11 0.05
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (90 bp):
GAGCCAGTGTAAGACATGTCTAAGATATGTATCGACCACATTATGAAAGCCAGTGTAAGACATGT
CTGGGACATGCATCGGCATTGACGA
Found at i:27201659 original size:137 final size:137
Alignment explanation
Indices: 27201409--27201785 Score: 619
Period size: 137 Copynumber: 2.8 Consensus size: 137
27201399 GTGGTATGTG
* * *
27201409 AGCCAGTGTAAGACATGTCTGGGACAAGCATCGACCACATTATGAGAGCCAGTGTAAGACATGTC
1 AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGACATGTC
* * *
27201474 TTGGACATGCGTCGGCATTGAGACGAGAGCTAGTGTAAATATGTCTAAGATATGTATCGGCCACA
66 TTGGACATGCATCGGCATTGAGACGAGAGCTAGTGTAAATATGTCTAAGATATGCATCGACCACA
27201539 TTATGAA
131 TTATGAA
* *
27201546 AGCTAGTGTATGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGACATGTC
1 AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGACATGTC
* *
27201611 TGGGACATGCATCGACATTGAGACGAGAGCTAGTGTAAATATGTCTAAGATATGCATCGACCACA
66 TTGGACATGCATCGGCATTGAGACGAGAGCTAGTGTAAATATGTCTAAGATATGCATCGACCACA
27201676 TTATGAA
131 TTATGAA
* * *
27201683 AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGAGAAGTT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGACATGTC
* *
27201748 TTGGACATGCATCGGCATTGAGATGAGAGTTAGTGTAA
66 TTGGACATGCATCGGCATTGAGACGAGAGCTAGTGTAA
27201786 GACATGTTTG
Statistics
Matches: 221, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
137 221 1.00
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (137 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGACATGTC
TTGGACATGCATCGGCATTGAGACGAGAGCTAGTGTAAATATGTCTAAGATATGCATCGACCACA
TTATGAA
Found at i:27201939 original size:49 final size:49
Alignment explanation
Indices: 27201873--27202040 Score: 155
Period size: 49 Copynumber: 3.4 Consensus size: 49
27201863 TGTGTGTCAA
* * *
27201873 TGTAAGACTTGTTTGGGACATGGCATCGACAC-CGATAGATGAGAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGCCAG
* * *
27201922 TGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCAG
* * * * * * *
27201971 TGTAGGACCTGTGTGGGACACGACATCGACTTCAAT-G-T-ATTAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA-AAGCCAG
*
27202018 TGTAAGACCATGTCTAGGACATG
1 TGTAAGACC-TGTCTGGGACATG
27202041 TCGTCGGCAT
Statistics
Matches: 96, Mismatches: 20, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
46 1 0.01
47 14 0.15
48 11 0.11
49 70 0.73
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCAG
Found at i:27202625 original size:21 final size:20
Alignment explanation
Indices: 27202597--27202636 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
27202587 CACTTGAAAC
*
27202597 AGGGAACACGCCCGTGTGGA
1 AGGGAACACACCCGTGTGGA
27202617 AGGGCAACACACCCGTGTGG
1 AGGG-AACACACCCGTGTGG
27202637 TCCTATTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.25, C:0.28, G:0.38, T:0.10
Consensus pattern (20 bp):
AGGGAACACACCCGTGTGGA
Found at i:27207386 original size:24 final size:24
Alignment explanation
Indices: 27207358--27207407 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
27207348 TGAAGGCATG
27207358 TAAAAATATGTTTATCTTTTTGTA
1 TAAAAATATGTTTATCTTTTTGTA
27207382 TAAAAATATGTTTATCTTTTTGTA
1 TAAAAATATGTTTATCTTTTTGTA
27207406 TA
1 TA
27207408 TGGCCATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.04, G:0.08, T:0.54
Consensus pattern (24 bp):
TAAAAATATGTTTATCTTTTTGTA
Found at i:27212018 original size:46 final size:43
Alignment explanation
Indices: 27211960--27212179 Score: 215
Period size: 46 Copynumber: 4.8 Consensus size: 43
27211950 GGTGGTATGT
27211960 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATT---ACGA
* * *
27212006 GAGCTAGTGTAAGACATGTCTCGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG---CATTACGA
* * * *
27212052 GAGCCAGTGTAAGACATATCTGGGAAATGCATTGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG---CATTACGA
* ** *
27212098 GAGCCAGTGTAACACATGTCTAAGACATGCATCCGCATTGAGACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATT---ACGA
* *
27212144 GAGCTAGTGTAAGACATGTCTGCGACATGCATCGGC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
27212180 CTCGAGATAT
Statistics
Matches: 147, Mismatches: 21, Indels: 12
0.82 0.12 0.07
Matches are distributed among these distances:
43 4 0.03
46 139 0.95
49 4 0.03
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (43 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTACGA
Found at i:27212263 original size:138 final size:136
Alignment explanation
Indices: 27211955--27212269 Score: 350
Period size: 138 Copynumber: 2.3 Consensus size: 136
27211945 CATTGGGTGG
* *
27211955 TATGTGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGAGCTAGTGTAAGA
1 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCCGCATTGAGACGAGAGCTAGTGTAAGA
* *
27212020 CATGTCTCGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACATATCTGGGAAATGCATT
66 CATGTCTCGGACATGCATCGGCCACAATATGAAAGCCAGTGTAAGACATATCTGGGAAATGCATT
*
27212085 GGCCACAT
131 AG-C-CAT
* **
27212093 TATGAGAGCCAGTGTAACACATGTCTAAGACATGCATCCGCATTGAGACGAGAGCTAGTGTAAGA
1 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCCGCATTGAGACGAGAGCTAGTGTAAGA
* * * * *
27212158 CATGTCT-GCGACATGCATCGGCCTCGAGATAT-ACAAGCTAGTGTAAGACCTATTTGGGACATG
66 CATGTCTCG-GACATGCATCGGCCAC-A-ATATGA-AAGCCAGTGTAAGACATATCTGGGAAAT-
*
27212221 GCGTTAG-C-T
126 GCATTAGCCAT
* * * * *
27212230 TGTTGTGTGTCAGTGTAAGACCTGTCTGGGACATGGCATC
1 T-ATGAGAGCCAGTGTAAGACATGTCTGGGACAT-GCATC
27212270 AACACCGATA
Statistics
Matches: 148, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
137 3 0.02
138 107 0.72
139 7 0.05
140 26 0.18
141 5 0.03
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (136 bp):
TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCCGCATTGAGACGAGAGCTAGTGTAAGA
CATGTCTCGGACATGCATCGGCCACAATATGAAAGCCAGTGTAAGACATATCTGGGAAATGCATT
AGCCAT
Found at i:27212328 original size:49 final size:49
Alignment explanation
Indices: 27212240--27212352 Score: 129
Period size: 49 Copynumber: 2.3 Consensus size: 49
27212230 TGTTGTGTGT
* *
27212240 CAGTGTAAGACCTGTCTGGGACATGGCATCAACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGAACATGGCATCAACACCGATAGATGAAAGC
* * ** * *
27212289 CAGTGTCAGACCTGTCTGGAACATTGCATTGAC-CTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGAACATGGCATCAACAC-CGATAGATGAAAGC
*
27212338 TAGTGTAAGACCTGT
1 CAGTGTAAGACCTGT
27212353 GTGGGACACG
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 1 0.02
49 52 0.98
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGAACATGGCATCAACACCGATAGATGAAAGC
Found at i:27218050 original size:27 final size:27
Alignment explanation
Indices: 27217977--27218068 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 27
27217967 TGGATAAGTT
* *
27217977 GTAGAATTACCGAAATACCTCTATAAG
1 GTAGAATTACCGAAATACCCCTATAGG
*
27218004 GTAGAAATACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTATAGG
* * * * *
27218031 GTAGAATTACTGAGACACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTATAGG
*
27218058 GTAAAATTACC
1 GTAGAATTACC
27218069 ATTTTGCCCC
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTATAGG
Found at i:27221445 original size:49 final size:48
Alignment explanation
Indices: 27221373--27221493 Score: 180
Period size: 48 Copynumber: 2.6 Consensus size: 48
27221363 GTGTCAACAA
27221373 TTATCACATATA-ATACACTTTCACATTCATCACATCGGCC-ATTAGGCC
1 TTATCACATATATATACACTTTCACATTCAT-ACA-CGGCCAATTAGGCC
27221421 TTATCACATATATATACACTTTCACATTCATACACGGCCAATTAGGCC
1 TTATCACATATATATACACTTTCACATTCATACACGGCCAATTAGGCC
27221469 TTATTCACATA-ATATACA--TTCACAT
1 TTA-TCACATATATATACACTTTCACAT
27221494 CACAATTATC
Statistics
Matches: 70, Mismatches: 0, Indels: 8
0.90 0.00 0.10
Matches are distributed among these distances:
46 7 0.10
47 5 0.07
48 33 0.47
49 25 0.36
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.33
Consensus pattern (48 bp):
TTATCACATATATATACACTTTCACATTCATACACGGCCAATTAGGCC
Found at i:27225284 original size:39 final size:40
Alignment explanation
Indices: 27225206--27225463 Score: 292
Period size: 39 Copynumber: 6.7 Consensus size: 40
27225196 ACGTCACCAA
* * * *
27225206 CTCTTCGAGACCTAGCCCGGATATAAC-CCAGC-CGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
27225244 CTCTTCGGG-GTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
27225283 CTCCTCGGGACTTAGCCCAGAT-TATCACTAGCA-GAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
27225321 CTCTTC-GGACTTAGGCCCGGATATATCACTAGCA-GAATG
1 CTCTTCGGGACTTA-GCCCGGATATATCACTAGCACGAATG
* *
27225360 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
*
27225400 CTC-CCGGGACTTAGCCC-G-TGATATCACTAGCACG-AT-
1 CTCTTCGGGACTTAGCCCGGAT-ATATCACTAGCACGAATG
27225436 CTCTTCTGGGACTTA--CCGGATATATCAC
1 CTCTTC-GGGACTTAGCCCGGATATATCAC
27225464 CTCAATTCTC
Statistics
Matches: 190, Mismatches: 18, Indels: 25
0.82 0.08 0.11
Matches are distributed among these distances:
36 5 0.03
37 32 0.17
38 52 0.27
39 78 0.41
40 23 0.12
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:27225390 original size:117 final size:113
Alignment explanation
Indices: 27225206--27225464 Score: 321
Period size: 116 Copynumber: 2.3 Consensus size: 113
27225196 ACGTCACCAA
* * * ** *
27225206 CTCTTCGAGACCTAGCCCGGATATAAC-CCAGCCGAATGCTCTTCGGGGTTAGCACGGATATATC
1 CTCTTCG-GACTTAGCCCGGATATATCACCAGCAGAATGCTCTTCGGACTTAGCACGGATACATC
27225270 ACTAGCACGAATGCTCCTCGGGACTTAGCCC-AGATTATCACTAGCA-GAAT
65 ACTAGCACGAATGCTCC-CGGGACTTAGCCCGAGA-TATCACTAGCACG-AT
* *
27225320 GCTCTTCGGACTTAGGCCCGGATATATCACTAGCAGAATGCTCTTCGGAACTTAGCCCGGATACA
1 -CTCTTCGGACTTA-GCCCGGATATATCACCAGCAGAATGCTCTTCGG-ACTTAGCACGGATACA
*
27225385 TCACTAGCACGAATGCTCCCGGGACTTAGCCCGTGATATCACTAGCACGAT
63 TCACTAGCACGAATGCTCCCGGGACTTAGCCCGAGATATCACTAGCACGAT
27225436 CTCTTCTGGGACTTA--CCGGATATATCACC
1 CTCTTC--GGACTTAGCCCGGATATATCACC
27225465 TCAATTCTCA
Statistics
Matches: 127, Mismatches: 10, Indels: 15
0.84 0.07 0.10
Matches are distributed among these distances:
114 18 0.14
115 25 0.20
116 43 0.34
117 41 0.32
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (113 bp):
CTCTTCGGACTTAGCCCGGATATATCACCAGCAGAATGCTCTTCGGACTTAGCACGGATACATCA
CTAGCACGAATGCTCCCGGGACTTAGCCCGAGATATCACTAGCACGAT
Found at i:27225450 original size:77 final size:78
Alignment explanation
Indices: 27225206--27225463 Score: 259
Period size: 77 Copynumber: 3.4 Consensus size: 78
27225196 ACGTCACCAA
* * * * * * ** *
27225206 CTCTTCGAGACCTAGCCCGGATATAAC-CCAGCCGAATGCTCTTCGGGGTTA-GCACGGATATAT
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCAGAATGCTCTCCGGACTTAGGCCCGGA-ATAT
27225269 CACTAGCACGAATG
65 CACTAGCACGAATG
* * *
27225283 CTCCTCGGGACTTAGCCCAGAT-TATCACTAGCAGAATGCTCTTCGGACTTAGGCCCGGATATAT
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCAGAATGCTCTCCGGACTTAGGCCCGGA-ATAT
27225347 CACTAGCA-GAATG
65 CACTAGCACGAATG
* *
27225360 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTC-CCGGGACTTA-GCCCGTG-AT
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCA-GAATGCTCTCC-GGACTTAGGCCCG-GAAT
27225422 ATCACTAGCACG-AT-
63 ATCACTAGCACGAATG
27225436 CTCTTCTGGGACTTA--CCGGATATATCAC
1 CTCTTC-GGGACTTAGCCCGGATATATCAC
27225464 CTCAATTCTC
Statistics
Matches: 156, Mismatches: 17, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
75 12 0.08
76 9 0.06
77 83 0.53
78 36 0.23
79 16 0.10
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (78 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCAGAATGCTCTCCGGACTTAGGCCCGGAATATC
ACTAGCACGAATG
Found at i:27230727 original size:39 final size:40
Alignment explanation
Indices: 27230683--27230945 Score: 376
Period size: 40 Copynumber: 6.7 Consensus size: 40
27230673 TCCAGCATGA
* * * *
27230683 TCTTCGAGACCTAG-CCGGATATAACACCAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
** *
27230722 TCTTCGGGGTTTAGCACGGATATATCACTAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
* *
27230762 TCCTCGGGACTTAGCCCAGATATATCACTAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
*
27230802 TCCTC-GGACTTAG-CC-GATATATCACTAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
* *
27230839 TC-TCGGAACTTAGCCCGGATACATCACTAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
27230878 TC-TCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
27230917 TCTTCGGGACTTAGCCCGGATATATCACT
1 TCTTCGGGACTTAGCCCGGATATATCACT
27230946 CTCAATTCTC
Statistics
Matches: 203, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
36 2 0.01
37 31 0.15
38 4 0.02
39 78 0.38
40 88 0.43
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
Found at i:27232198 original size:37 final size:37
Alignment explanation
Indices: 27232148--27232226 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27232138 TTATTACGAA
* * *
27232148 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
27232185 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
27232222 GTCTT
1 GTCTT
27232227 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:27232423 original size:47 final size:47
Alignment explanation
Indices: 27232345--27232602 Score: 405
Period size: 47 Copynumber: 5.6 Consensus size: 47
27232335 CCCTTCGGGA
* * * * * *
27232345 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27232392 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27232439 CTTATCACATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27232484 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27232530 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27232577 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
27232603 CACAATTATC
Statistics
Matches: 196, Mismatches: 12, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
45 45 0.23
46 46 0.23
47 105 0.54
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27235457 original size:40 final size:40
Alignment explanation
Indices: 27235425--27235814 Score: 622
Period size: 40 Copynumber: 9.8 Consensus size: 40
27235415 CCAGCATGAT
* * * *
27235425 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
27235465 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
27235505 TGCCCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
27235545 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
27235585 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
27235625 TGCTCCTCGGGACTTAGCTCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
27235665 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
27235705 TGCTCTTC--GACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
27235743 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
27235783 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
27235815 CTCAATTCTC
Statistics
Matches: 322, Mismatches: 26, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
38 37 0.11
40 285 0.89
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:27235682 original size:23 final size:23
Alignment explanation
Indices: 27235616--27235682 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
27235606 GATATATCAC
27235616 TAGCACGAATGCTCCTCGGGACT
1 TAGCACGAATGCTCCTCGGGACT
* * * *
27235639 TAGCTCGGAT-AT-ATC---AC-
1 TAGCACGAATGCTCCTCGGGACT
27235656 TAGCACGAATGCTCCTCGGGACT
1 TAGCACGAATGCTCCTCGGGACT
27235679 TAGC
1 TAGC
27235683 CCGGATATAT
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 8 0.27
18 3 0.10
19 2 0.07
21 2 0.07
22 3 0.10
23 12 0.40
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (23 bp):
TAGCACGAATGCTCCTCGGGACT
Found at i:27237103 original size:37 final size:37
Alignment explanation
Indices: 27237024--27237103 Score: 97
Period size: 37 Copynumber: 2.2 Consensus size: 37
27237014 CTTATTACGA
* * * **
27237024 AGTCTTACCCGGGCATAATCTCCACACGAAGTTTTCG
1 AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
* *
27237061 GGTCTTACCCGGACAAAATCCCCACACGTAGTCATCG
1 AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
27237098 AGTCTT
1 AGTCTT
27237104 TAGAGCTCGG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
Found at i:27237291 original size:47 final size:47
Alignment explanation
Indices: 27237222--27237574 Score: 599
Period size: 47 Copynumber: 7.6 Consensus size: 47
27237212 CCCTTCGGGA
*
27237222 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27237269 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27237316 CTTCTCACATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27237361 C-T-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27237406 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27237453 CTTATCACATATA-ACACACTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACAC-TTTCACATTCATCACATCGGCCATTAGGC
27237500 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27237549 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
27237575 CACAATTATC
Statistics
Matches: 292, Mismatches: 6, Indels: 16
0.93 0.02 0.05
Matches are distributed among these distances:
43 10 0.03
44 1 0.00
45 64 0.22
46 5 0.02
47 167 0.57
49 41 0.14
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27237571 original size:137 final size:138
Alignment explanation
Indices: 27237222--27237563 Score: 543
Period size: 137 Copynumber: 2.5 Consensus size: 138
27237212 CCCTTCGGGA
27237222 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-
* * *
27237285 ACTTTCACATTCATCACATCGGCCATTAGGCCTTCTCACATATATACTTTCACATTCATCACATC
65 A--TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACCTTCACATTCATCACATC
27237350 GGCCATTAGGC
128 GGCCATTAGGC
27237361 C-T-TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-
27237422 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAACACACTTCACATTCATCACA
65 A--TTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT-ACAC-CTTCACATTCATCACA
27237487 TCGGCCATTAGGC
126 TCGGCCATTAGGC
27237500 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
27237564 TACATTCACA
Statistics
Matches: 192, Mismatches: 3, Indels: 12
0.93 0.01 0.06
Matches are distributed among these distances:
136 1 0.01
137 98 0.51
138 4 0.02
139 30 0.16
140 1 0.01
141 4 0.02
143 54 0.28
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (138 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAA
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACCTTCACATTCATCACATCGGC
CATTAGGC
Found at i:27237571 original size:184 final size:181
Alignment explanation
Indices: 27237222--27237563 Score: 560
Period size: 184 Copynumber: 1.8 Consensus size: 181
27237212 CCCTTCGGGA
*
27237222 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
27237287 TTTCACATTCATCACATCGGCCATTAGGCCTTCTCACATATATACTTTCACATTCATCACATCGG
66 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTTTCACATTCATCACATCGG
27237352 CCATTAGGCCTTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 CCATTAGGCCTTCACATATATA-A--TTCACATTCATCACATCGGCCATTAGGC
27237406 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA-ACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
27237470 ACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
66 -CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT--ACTTTCACATTCATCAC
27237535 ATCGGCCATTAGGCCTTATCACATATATA
126 ATCGGCCATTAGGCC-T-TCACATATATA
27237564 TACATTCACA
Statistics
Matches: 148, Mismatches: 3, Indels: 8
0.93 0.02 0.05
Matches are distributed among these distances:
183 4 0.03
184 94 0.64
186 6 0.04
188 32 0.22
189 1 0.01
190 11 0.07
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (181 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTTTCACATTCATCACATCGG
CCATTAGGCCTTCACATATATAATTCACATTCATCACATCGGCCATTAGGC
Found at i:27242479 original size:289 final size:290
Alignment explanation
Indices: 27241957--27242486 Score: 918
Period size: 289 Copynumber: 1.8 Consensus size: 290
27241947 ACCAAAGTGT
*
27241957 AAAAATGTGAATATTAAATGAGTTAAATTTGTTATTATAGATCAAGAGAAACGAGGTTTGGACCT
1 AAAAATGTGAATATTAAATGAGTTAAATTTGTTATTATAGATCAAGAAAAACGAGGTTTGGACCT
* *
27242022 AGATCGGGGTAAAAACAAAGTGTTTGACAATTAGGTCCCATTTCTACTATTTTTGTACCGAGGCA
66 AGATCAGGGTAAAAACAAAATGTTTGACAATTAGGTCCCATTTCTACTATTTTTGTACCGAGGCA
* *
27242087 AGTTCGTATGTAAATAATGCATTGTTTTAATTATGTTTTAAATGCTTTATTATTGTATGAATTGT
131 AGTTCATATGTAAATAATACATTGTTTTAATTATGTTTTAAATGCTTTATTATTGTATGAATTGT
* *
27242152 GATTGACCCTTGGATGTATTCGACAAAGTTTCAACAAGCGTGAAATTTCGGGAAAAATGTAATTT
196 GATTGACCCTTGGACGTATTCGACAAAGTTTCAACAAGCATGAAATTTCGGGAAAAATGTAATTT
27242217 TTGCCATAGTGTAATTTTTGGGCTAAATTG
261 TTGCCATAGTGTAATTTTTGGGCTAAATTG
*
27242247 AAAAATGTGAATATTAAATGAGTTAAATTTGTTATTATAGATCAAGAAAAATGAGGTTTGGACCT
1 AAAAATGTGAATATTAAATGAGTTAAATTTGTTATTATAGATCAAGAAAAACGAGGTTTGGACCT
* * *
27242312 AGATCAGGG-AAAAACAAAATGTTTGACAATTAGTTCTCATTTCTACTATTTTTGTACCGAGGTA
66 AGATCAGGGTAAAAACAAAATGTTTGACAATTAGGTCCCATTTCTACTATTTTTGTACCGAGGCA
*
27242376 AGTTCATATGTAAATAATACATTTTTTTAATTATGTTTTAAATGCTTTATTATTGTATGAATTGT
131 AGTTCATATGTAAATAATACATTGTTTTAATTATGTTTTAAATGCTTTATTATTGTATGAATTGT
* * *
27242441 GATTGACCCTTGGACGTATTCGGCAAATTTTTAACAAGCATGAAAT
196 GATTGACCCTTGGACGTATTCGACAAAGTTTCAACAAGCATGAAAT
27242487 CCCGGTTGAA
Statistics
Matches: 225, Mismatches: 15, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
289 154 0.68
290 71 0.32
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (290 bp):
AAAAATGTGAATATTAAATGAGTTAAATTTGTTATTATAGATCAAGAAAAACGAGGTTTGGACCT
AGATCAGGGTAAAAACAAAATGTTTGACAATTAGGTCCCATTTCTACTATTTTTGTACCGAGGCA
AGTTCATATGTAAATAATACATTGTTTTAATTATGTTTTAAATGCTTTATTATTGTATGAATTGT
GATTGACCCTTGGACGTATTCGACAAAGTTTCAACAAGCATGAAATTTCGGGAAAAATGTAATTT
TTGCCATAGTGTAATTTTTGGGCTAAATTG
Found at i:27242603 original size:42 final size:42
Alignment explanation
Indices: 27242541--27242662 Score: 129
Period size: 42 Copynumber: 2.9 Consensus size: 42
27242531 TTAGGGTTAC
* * * *
27242541 TGAGACTACGTGTAAAACCATATCTGGGATATGGCATCAATA
1 TGAGACTTCATGTAAGACCATATCTGAGATATGGCATCAATA
* * * *
27242583 TGAGACTTCATGTAAGACCATAGCTGAGCTATTGGCATCGATG
1 TGAGACTTCATGTAAGACCATATCTGAGATA-TGGCATCAATA
**
27242626 CAAGA-TTACATGTAAGACCATATCTGAGATATGGCAT
1 TGAGACTT-CATGTAAGACCATATCTGAGATATGGCAT
27242663 TGGTACAGTA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
42 33 0.50
43 33 0.50
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (42 bp):
TGAGACTTCATGTAAGACCATATCTGAGATATGGCATCAATA
Found at i:27250219 original size:47 final size:48
Alignment explanation
Indices: 27250150--27250411 Score: 267
Period size: 46 Copynumber: 5.6 Consensus size: 48
27250140 GTAAGGTGCG
*
27250150 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCGT-ATCTC-AAATC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATCTCGAAACC
* * * *
27250197 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGAAACC
* * **
27250245 GATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACGTCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATCTCGAAACC
* * * *
27250291 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTC-AATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGAA-ACC
***
27250337 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCT-GTGTCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGAAACC
*
27250384 GATG-CATGTCCCAGACAT-GTTTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
27250412 AGCCCACAAA
Statistics
Matches: 186, Mismatches: 21, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
45 11 0.06
46 79 0.42
47 71 0.38
48 25 0.13
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGAAACC
Found at i:27250346 original size:93 final size:93
Alignment explanation
Indices: 27250150--27250414 Score: 301
Period size: 93 Copynumber: 2.8 Consensus size: 93
27250140 GTAAGGTGCG
* *
27250150 GATGCCATGTCCCAGACATGGTCTTACACTGGC-TCGTATCTC-AAATCGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTCG--TCTCGAGACCGATG-CATGTCCCAGA
*
27250213 CATGGTCTTACACT-GACTATCATCTCGTAGCC
63 CAT-GTCTTACACTAG-CTATCATCTCATAGCC
* *
27250245 GATG-CATGTCCCAAACAT-GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTT-CGTCTCGAGACCGATGCATGTCCCAGACA
* * *
27250308 TGTCTTACACTAGCTCTCGTCTCA-ATGCT
65 TGTCTTACACTAGCTATCATCTCATA-GCC
* * *
27250337 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCT-GTGTCCGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCGTCTCGAGACCGATGCATGTCCCAGACA
*
27250401 TGTTTTACACTAGC
65 TGTCTTACACTAGC
27250415 CCACAAACAA
Statistics
Matches: 149, Mismatches: 13, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
91 1 0.01
92 24 0.16
93 79 0.53
94 38 0.26
95 7 0.05
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTTCGTCTCGAGACCGATGCATGTCCCAGACAT
GTCTTACACTAGCTATCATCTCATAGCC
Found at i:27253057 original size:14 final size:15
Alignment explanation
Indices: 27253030--27253059 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
27253020 AGGACTTAAG
27253030 GATTAATGCATAAAA
1 GATTAATGCATAAAA
27253045 GATTAAT-CATAAAA
1 GATTAATGCATAAAA
27253059 G
1 G
27253060 GTTATGTCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (15 bp):
GATTAATGCATAAAA
Found at i:27259513 original size:47 final size:46
Alignment explanation
Indices: 27259440--27259615 Score: 171
Period size: 47 Copynumber: 3.8 Consensus size: 46
27259430 GGTACGGTGC
* *
27259440 CGATGCCATGT-CCAAACATGGTCTTACATTGGCTCATATCTCAAAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTC-AAT
* * *
27259486 CGATACCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTC--AAT
* * * *
27259534 CGATG-CATGTCCCAGACAT-GTCTTACACTAGATCTTGTCTCAAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAT
* *
27259578 GCCGATGCCATGTCCTAGACATGGTCTTATACTGGCTC
1 --CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
27259616 TCATAAAGTG
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
44 2 0.02
46 32 0.30
47 53 0.50
48 18 0.17
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAT
Found at i:27259583 original size:46 final size:45
Alignment explanation
Indices: 27259437--27259656 Score: 150
Period size: 47 Copynumber: 4.7 Consensus size: 45
27259427 GTGGGTACGG
* * *
27259437 TGCCGATGCCATGT-CCAAACATGGTCTTACATTGGCTCATATCTCAAA
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTGACT--TATCTC-AA
*
27259485 T--CGATACCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAA
1 TGCCGAT-GCATGTCCCAGACATGGTCTTACACTGACT-T-ATCTC--AA
*
27259533 --CCGATGCATGTCCCAGACAT-GTCTTACACTAGATCTTGTCTCAA
1 TGCCGATGCATGTCCCAGACATGGTCTTACACT-GA-CTTATCTCAA
* * * * *
27259577 TGCCGATGCCATGTCCTAGACATGGTCTTATACTGGC-TCTCATAAA
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTGACTTATC-TCAA
*
27259623 GTGGCTGATGCATGTCCCAGACAT-GTCTTACACT
1 -T-GCCGATGCATGTCCCAGACATGGTCTTACACT
27259657 AGCCCCCAAA
Statistics
Matches: 143, Mismatches: 15, Indels: 30
0.76 0.08 0.16
Matches are distributed among these distances:
44 2 0.01
45 3 0.02
46 44 0.31
47 70 0.49
48 24 0.17
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.30
Consensus pattern (45 bp):
TGCCGATGCATGTCCCAGACATGGTCTTACACTGACTTATCTCAA
Found at i:27259600 original size:94 final size:94
Alignment explanation
Indices: 27259486--27259658 Score: 247
Period size: 94 Copynumber: 1.8 Consensus size: 94
27259476 TATCTCAAAT
***
27259486 CGATACCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAACCGATGCATGTCCCAGAC
1 CGATACCATGTCCCAGACATGGTCTTACACTGACTATCATAAAGTAACCGATGCATGTCCCAGAC
27259551 ATGTCTTACACTAGATCTTGTCTCAATGC
66 ATGTCTTACACTAGATCTTGTCTCAATGC
* * * * * ** *
27259580 CGATGCCATGTCCTAGACATGGTCTTATACTGGCTCTCATAAAGTGGCTGATGCATGTCCCAGAC
1 CGATACCATGTCCCAGACATGGTCTTACACTGACTATCATAAAGTAACCGATGCATGTCCCAGAC
27259645 ATGTCTTACACTAG
66 ATGTCTTACACTAG
27259659 CCCCCAAACA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
94 68 1.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (94 bp):
CGATACCATGTCCCAGACATGGTCTTACACTGACTATCATAAAGTAACCGATGCATGTCCCAGAC
ATGTCTTACACTAGATCTTGTCTCAATGC
Found at i:27268705 original size:691 final size:691
Alignment explanation
Indices: 27267378--27268768 Score: 2602
Period size: 691 Copynumber: 2.0 Consensus size: 691
27267368 GCAACTAGTC
* * *
27267378 AATTTAGTCGTTTTGCTTAAATTTCTGCTGGTCTAGGCTTAAAGTCGATATTTCTTGATCTATAA
1 AATTTTGTCGTTTTGCTTAAATTTCCGCCGGTCTAGGCTTAAAGTCGATATTTCTTGATCTATAA
* *
27267443 TATCAAAATGCACTCATTTAATCACTAAATAAATTTAAGCAAGTAAAAATTCACATCTTTGATAA
66 AATCAAAATGCACTCATTTAATCACTAAATAAATTTAAGCAAGTAAAAATTCACATCTTCGATAA
27267508 AATGACCATTTTGCCCCTATACTTTGGCAAAATGACCATTTTACCCGTATGCTTGAAAATCAAAT
131 AATGACCATTTTGCCCCTATACTTTGGCAAAATGACCATTTTACCCGTATGCTTGAAAATCAAAT
*
27267573 TTTATTGAATTTATTCACATCTTAAGCCTAGATGAACTCTTTTTACTCTTATTTCCACCCCAAAT
196 TTTATTGAATTTATTCACATCTTAAGCCTAGATGAACTCTTTTTACTCTTATTTCAACCCCAAAT
27267638 ACTCTCTATTTCACACATTTATCATTCATTTTACAACTTGTGCAAAATAGTCCCTTTAGGTGCTT
261 ACTCTCTATTTCACACATTTATCATTCATTTTACAACTTGTGCAAAATAGTCCCTTTAGGTGCTT
* *
27267703 TCATGGTAACACCTTTCACAAAAGTTGTTTATTACACAACTAAGACTCATATTCTTGCATAAAGT
326 TCATGGTAACACCTTTCACAAAAGTTGTCTATTACACAACTAAGACTCATATTCTTGCATAAAAT
27267768 TTTAGAAAACTCCCTAAATTATCTCATGGAAAAACCCTAGACTTTCAACCATTTTGCATGATACT
391 TTTAGAAAACTCCCTAAATTATCTCATGGAAAAACCCTAGACTTTCAACCATTTTGCATGATACT
27267833 CCCCTCATTTGAAAGCTCATGCTTCAAGGGTCTTAAAAATGCAAAAATCATCAACAAAGGGTATG
456 CCCCTCATTTGAAAGCTCATGCTTCAAGGGTCTTAAAAATGCAAAAATCATCAACAAAGGGTATG
* * *
27267898 GAAATCACTTACTTCTGAGTGCTTCAAGTTGCTAAAAATTTTAAGGTCTCAAACGACCCTTCAAT
521 GAAATCACTTACTTCTGAGTGCTTCAAGTTGCTAAAAATTTTAAGCTCTCAAACCAACCTTCAAT
* *
27267963 GGCTAATTTTTGGTGGAGAAAATAGATGAGAAAGGGATGATATCATCCTTCTTTTAGTTATTTAT
586 GGCTAATATTTGGTGGAGAAAAGAGATGAGAAAGGGATGATATCATCCTTCTTTTAGTTATTTAT
27268028 ATTTTAGTCAAAATAAGTCACCTGACCTACCAAATTTTGAA
651 ATTTTAGTCAAAATAAGTCACCTGACCTACCAAATTTTGAA
*
27268069 AATTTTGTCGTTTTGCTTAGATTTCCGCCGGTCTAGGCTTAAAGTCGATATTTCTTGATCTATAA
1 AATTTTGTCGTTTTGCTTAAATTTCCGCCGGTCTAGGCTTAAAGTCGATATTTCTTGATCTATAA
*
27268134 AATCAAAATGCACTCATTTAATCACTAAATAAATTTAAGCAAGTAAAAATTCACATCTTCGGTAA
66 AATCAAAATGCACTCATTTAATCACTAAATAAATTTAAGCAAGTAAAAATTCACATCTTCGATAA
27268199 AATGACCATTTTGCCCCTATACTTTGGCAAAATGACCATTTTACCCGTATGCTTGAAAATCAAAT
131 AATGACCATTTTGCCCCTATACTTTGGCAAAATGACCATTTTACCCGTATGCTTGAAAATCAAAT
* *
27268264 TTTATTGAATTTATTCACATCTTCAGCCTAGATGAACTCTTTTTACTCTTATTTTAACCCCAAAT
196 TTTATTGAATTTATTCACATCTTAAGCCTAGATGAACTCTTTTTACTCTTATTTCAACCCCAAAT
*
27268329 ACTCTCTATTTCACACATTTATCATTCATTTTACAACTTGTGCAAAATAGTCCCTTTAGGTGTTT
261 ACTCTCTATTTCACACATTTATCATTCATTTTACAACTTGTGCAAAATAGTCCCTTTAGGTGCTT
27268394 TCATGGTAACACCTTTCACAAAAGTTGTCTATTACACAACTAAGACTCATATTCTTGCATAAAAT
326 TCATGGTAACACCTTTCACAAAAGTTGTCTATTACACAACTAAGACTCATATTCTTGCATAAAAT
27268459 TTTAGAAAACTCCCTAAATTATCTCATGGAAAAACCCTAGACTTTCAACCATTTTGCATGATACT
391 TTTAGAAAACTCCCTAAATTATCTCATGGAAAAACCCTAGACTTTCAACCATTTTGCATGATACT
27268524 CCCCTCATTTGAAAGCTCATGCTTCAAGGGTCTTAAAAATGCAAAAATCATCAACAAAGGGTATG
456 CCCCTCATTTGAAAGCTCATGCTTCAAGGGTCTTAAAAATGCAAAAATCATCAACAAAGGGTATG
*
27268589 GAAATCACTTACTTCTGAGTGCTTCAAGTTGCTAAAAATTTTAATCTCTCAAACCAACCTTCAAT
521 GAAATCACTTACTTCTGAGTGCTTCAAGTTGCTAAAAATTTTAAGCTCTCAAACCAACCTTCAAT
*
27268654 GGCTAATATTTGGTGGAGAAAAGAGATGAGAAAGGGATGATATCATCCTTCTTTTATTTATTTAT
586 GGCTAATATTTGGTGGAGAAAAGAGATGAGAAAGGGATGATATCATCCTTCTTTTAGTTATTTAT
27268719 ATTTTAGTCAAAATAAGTCACCTGACCTACCAAATTTTGAA
651 ATTTTAGTCAAAATAAGTCACCTGACCTACCAAATTTTGAA
27268760 AATTTTGTC
1 AATTTTGTC
27268769 TCCACTTTGA
Statistics
Matches: 680, Mismatches: 20, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
691 680 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (691 bp):
AATTTTGTCGTTTTGCTTAAATTTCCGCCGGTCTAGGCTTAAAGTCGATATTTCTTGATCTATAA
AATCAAAATGCACTCATTTAATCACTAAATAAATTTAAGCAAGTAAAAATTCACATCTTCGATAA
AATGACCATTTTGCCCCTATACTTTGGCAAAATGACCATTTTACCCGTATGCTTGAAAATCAAAT
TTTATTGAATTTATTCACATCTTAAGCCTAGATGAACTCTTTTTACTCTTATTTCAACCCCAAAT
ACTCTCTATTTCACACATTTATCATTCATTTTACAACTTGTGCAAAATAGTCCCTTTAGGTGCTT
TCATGGTAACACCTTTCACAAAAGTTGTCTATTACACAACTAAGACTCATATTCTTGCATAAAAT
TTTAGAAAACTCCCTAAATTATCTCATGGAAAAACCCTAGACTTTCAACCATTTTGCATGATACT
CCCCTCATTTGAAAGCTCATGCTTCAAGGGTCTTAAAAATGCAAAAATCATCAACAAAGGGTATG
GAAATCACTTACTTCTGAGTGCTTCAAGTTGCTAAAAATTTTAAGCTCTCAAACCAACCTTCAAT
GGCTAATATTTGGTGGAGAAAAGAGATGAGAAAGGGATGATATCATCCTTCTTTTAGTTATTTAT
ATTTTAGTCAAAATAAGTCACCTGACCTACCAAATTTTGAA
Found at i:27271845 original size:40 final size:41
Alignment explanation
Indices: 27271721--27271885 Score: 173
Period size: 40 Copynumber: 4.1 Consensus size: 41
27271711 CGGAATTTAA
* *
27271721 CCGGA-TATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATTATAG-TAACTCGTACAAATGCCTTCGGGACTTAGC
* *
27271761 CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATTATAGTAACTCGTACAAATGCCTTCGGGACTTAGC
*
27271801 CCGGATT-TAGTAACTCGTACAAATGCCTTC-GGATCTTAGT
1 CCGGATTATAGTAACTCGTACAAATGCCTTCGGGA-CTTAGC
* * * *
27271841 CCGGA-TATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATTATAGTAAC-TCGTACAAATGCCTTCGGGACTTAGC
27271881 CCGGA
1 CCGGA
27271886 CATCATTCAA
Statistics
Matches: 106, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
39 5 0.05
40 89 0.84
41 12 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (41 bp):
CCGGATTATAGTAACTCGTACAAATGCCTTCGGGACTTAGC
Found at i:27271869 original size:80 final size:80
Alignment explanation
Indices: 27271707--27271885 Score: 204
Period size: 80 Copynumber: 2.2 Consensus size: 80
27271697 AAATCACGTA
* * * *
27271707 CCTTCGGAATTTAA-CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAG
1 CCTTCGGGACTTAACCCGGATATAGCTACTCGTACAAATGCCTTCGGGACATAGCCCGGATATAG
*
27271771 TAACTCGCACAAATG
66 TAACTAGCACAAATG
* * *
27271786 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGTACAAATGCCTTC-GGATCTTAGTCCGGATAT
1 CCTTCGGGACTTAACCCGGATATAGCT-ACTCGTACAAATGCCTTCGGGA-CATAGCCCGGATAT
* *
27271849 GGTCACTTAGCACAAA-G
64 AGTAAC-TAGCACAAATG
*
27271866 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
27271886 CATCATTCAA
Statistics
Matches: 85, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
79 16 0.19
80 61 0.72
81 8 0.09
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGCTACTCGTACAAATGCCTTCGGGACATAGCCCGGATATAG
TAACTAGCACAAATG
Found at i:27282036 original size:56 final size:55
Alignment explanation
Indices: 27281935--27282040 Score: 162
Period size: 56 Copynumber: 1.9 Consensus size: 55
27281925 ACAAGGGATG
*
27281935 ATGGGCAAAAATGTCATGAACATGTTGTGTTAATGGAAATAATAAATATAAAGAAT
1 ATGGGCAAAAATGTCATGAACATGTTGTGTTAATGGAAAGAATAAA-ATAAAGAAT
27281991 ATGGGCAAAACATGTCATGAAACATGTTGTGTT-ATGG-AAGAATAAAATAA
1 ATGGGCAAAA-ATGTCATG-AACATGTTGTGTTAATGGAAAGAATAAAATAA
27282041 GAAGCATGGC
Statistics
Matches: 47, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
55 4 0.09
56 18 0.38
57 12 0.26
58 13 0.28
ACGTcount: A:0.45, C:0.07, G:0.21, T:0.27
Consensus pattern (55 bp):
ATGGGCAAAAATGTCATGAACATGTTGTGTTAATGGAAAGAATAAAATAAAGAAT
Found at i:27283644 original size:42 final size:45
Alignment explanation
Indices: 27283596--27283689 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 45
27283586 TGATGTGTCA
* * *
27283596 TATATATGT-A-AAGCC-TAATGGCCATTGATGAT-GTGAAAGGTG
1 TATATATGTGACAAGCCGGAATGGCAAGTGATGATAGTGAAA-GTG
27283638 TATATATGTGACAAGCCGGAATGGCAAGTGATGATAGTGAAAGTG
1 TATATATGTGACAAGCCGGAATGGCAAGTGATGATAGTGAAAGTG
27283683 TATATAT
1 TATATAT
27283690 ATGTGAATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
42 9 0.20
43 1 0.02
44 5 0.11
45 24 0.53
46 6 0.13
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.30
Consensus pattern (45 bp):
TATATATGTGACAAGCCGGAATGGCAAGTGATGATAGTGAAAGTG
Found at i:27283761 original size:45 final size:44
Alignment explanation
Indices: 27283704--27283940 Score: 199
Period size: 45 Copynumber: 5.4 Consensus size: 44
27283694 GAATAAGAGC
27283704 ATGG-CAAT-TGATGAATG-ACATGTGTATGTGTGATAAGGCCGCA
1 ATGGCCAATGTGATGAATGAACATGTGTATGT-TGATAAGGCCG-A
** **
27283747 ATGGCCAATGTGATGAAGTGAACATGCATATAATGAATAA-GCCGA
1 ATGGCCAATGTGATGAA-TGAACATGTGTATGTTG-ATAAGGCCGA
27283792 ATGG-CAATGTGATGAATGTGAACATGTGTATGTTGATAAAGG-CGA
1 ATGGCCAATGTGATGAA--TGAACATGTGTATGTTGAT-AAGGCCGA
* *
27283837 AT-GCCAATGTGATTGAAGGCACTATGTGTATGTTGAT-AGGCCGA
1 ATGGCCAATGTGA-TGAATGAAC-ATGTGTATGTTGATAAGGCCGA
** * *
27283881 ATGGCC-ATGTGATGAATGTGAACTACATATAAG--GATAAGGCCGA
1 ATGGCCAATGTGATGAA--TGAAC-ATGTGTATGTTGATAAGGCCGA
27283925 ATGGCCAATGTGATGA
1 ATGGCCAATGTGATGA
27283941 TGTGAAAAGT
Statistics
Matches: 161, Mismatches: 16, Indels: 32
0.77 0.08 0.15
Matches are distributed among these distances:
43 14 0.09
44 46 0.29
45 76 0.47
46 13 0.08
47 12 0.07
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (44 bp):
ATGGCCAATGTGATGAATGAACATGTGTATGTTGATAAGGCCGA
Found at i:27283846 original size:89 final size:92
Alignment explanation
Indices: 27283704--27283938 Score: 244
Period size: 89 Copynumber: 2.7 Consensus size: 92
27283694 GAATAAGAGC
27283704 ATGGCAAT-TGATGAA--TG-ACATGTGTATGTGTGATAAGGCCGCAATGGCCAATGTGA-TGAA
1 ATGGCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGCAATGGCCAATGTGATTGAA
27283764 GTGAAC-ATGCATATAATGAATAAGCCGA
66 G-GAACTATGCATATAATG-ATAAGCCGA
27283792 ATGGCAATGTGATGAATGTGAACATGTGTATGT-TGATAAAGG-CG-AAT-GCCAATGTGATTGA
1 ATGGCAATGTGATGAATGTGAACATGTGTATGTGTGAT-AAGGCCGCAATGGCCAATGTGATTGA
* ** ** *
27283853 AGGCACTATGTGTATGTTGATAGGCCGA
65 AGGAACTATGCATATAATGATAAGCCGA
* *** **
27283881 ATGGCCATGTGATGAATGTGAAC-TACATATAAG-GATAAGGCCG-AATGGCCAATGTGAT
1 ATGGCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGCAATGGCCAATGTGAT
27283939 GATGTGAAAA
Statistics
Matches: 125, Mismatches: 12, Indels: 19
0.80 0.08 0.12
Matches are distributed among these distances:
87 4 0.03
88 20 0.16
89 61 0.49
90 16 0.13
91 8 0.06
92 16 0.13
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (92 bp):
ATGGCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGCAATGGCCAATGTGATTGAA
GGAACTATGCATATAATGATAAGCCGA
Found at i:27286429 original size:48 final size:49
Alignment explanation
Indices: 27286365--27286982 Score: 402
Period size: 46 Copynumber: 13.2 Consensus size: 49
27286355 ATATTTTTTA
*
27286365 ATGTGATAAGGCCTAATGACCAAT-TGATGAATGTGAAAGTGTATATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
27286413 ATGTGATAAGGCCTAAT-GCCAATGTGATGAATGT---AGTG-ATATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
* *
27286457 ATGTGAT-AGG-CTAATGGCCGATGTGATG-ATGTGGAAGTGTATGAT-T
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTAT-ATAT
* *
27286503 ACGTGTATAAGG-CT-ATGGCC-GTGTG-TG-ATAGTGAAAGTGTAT-TAAT
1 ATGTG-ATAAGGCCTAATGGCCAATGTGATGAAT-GTGAAAGTGTATAT-AT
*
27286549 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG---ATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
*
27286595 ATGTGATAAGGCCGAATGG-CAATGTGATG-A--TGAAAGTTGTATACTAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG-TGTATA-TAT
* * *
27286642 ATGTGATAA-GCACAAATGGCCAATAG-AATTGAATGTGAACA-TG--TGTAT
1 ATGTGATAAGGC-CTAATGGCCAAT-GTGA-TGAATGTGAA-AGTGTATATAT
* ** * *
27286690 GTGTGATAAGGCAGGAATGGCC-ATGTGATGAATGTGAAAATG--CATAT
1 ATGTGATAAGGC-CTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
* * *
27286737 ATGAGATAA-GCCGAATGGCCAATGTGATGAATGTGAACA-TG--TGTAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-AGTGTATATAT
* *** * *
27286783 GTGTGATAAGGGAGAAATGGCCAAATGTGAAGAAATGTGAACA-TG--TGTAT
1 ATGTGATAA-GGCCTAATGGCC-AATGTGATG-AATGTGAA-AGTGTATATAT
* * *
27286833 GTG-GATAAGG-CGAATGGCCAATGTAGATGAATGTGACACA-TG--CATAT
1 ATGTGATAAGGCCTAATGGCCAATGT-GATGAATGTGA-A-AGTGTATATAT
* *
27286880 ATGAGATAAGGCCGAATGGCCAATTGTGATGAATGTGAAAGTG--TATAT
1 ATGTGATAAGGCCTAATGGCCAA-TGTGATGAATGTGAAAGTGTATATAT
* *
27286928 -TGTGA-AAGGCTCGAAT-GCCAATGTGATG-ATGTGGATAGTGTATA-A-
1 ATGTGATAAGGC-CTAATGGCCAATGTGATGAATGT-GAAAGTGTATATAT
27286973 ATGTGATAAG
1 ATGTGATAAG
27286983 TCCGAAGGGC
Statistics
Matches: 480, Mismatches: 38, Indels: 105
0.77 0.06 0.17
Matches are distributed among these distances:
42 15 0.03
43 16 0.03
44 19 0.04
45 48 0.10
46 111 0.23
47 99 0.21
48 79 0.16
49 60 0.12
50 26 0.05
51 2 0.00
52 4 0.01
53 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (49 bp):
ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
Found at i:27286574 original size:94 final size:93
Alignment explanation
Indices: 27286365--27286651 Score: 296
Period size: 90 Copynumber: 3.1 Consensus size: 93
27286355 ATATTTTTTA
* * *
27286365 ATGTGATAAGGCCTAATGACCAAT-TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATACGTGATAAGGCCTAA
*
27286429 TGCCAATGTGATGAATGTAGTGATATAT
66 TGCCAATGTGATGAATGAAGTGATATAT
*
27286457 ATGTGAT-AGG-CTAATGGCCGATGTGATG-ATGTGGAAGTGTATGAT-TACGTGTATAAGG-CT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-ATATACGTG-ATAAGGCCT
*
27286517 -ATGGCC-GTGTG-TGATAGTGAAAGTG-TATTAAT
64 AAT-GCCAATGTGATGA-A-TG-AAGTGATA-T-AT
*
27286549 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATAT--GTGATAAGGCCGAA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATACGTGATAAGGCCTAA
*
27286611 TGGCAATGTGATG-ATGAAAGTTGTATACTAT
66 TGCCAATGTGATGAATG-AAG-TG-ATA-TAT
27286642 ATGTGATAAG
1 ATGTGATAAG
27286652 CACAAATGGC
Statistics
Matches: 164, Mismatches: 11, Indels: 39
0.77 0.05 0.18
Matches are distributed among these distances:
88 3 0.02
89 7 0.04
90 37 0.23
91 33 0.20
92 25 0.15
93 23 0.14
94 26 0.16
95 10 0.06
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (93 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATACGTGATAAGGCCTAA
TGCCAATGTGATGAATGAAGTGATATAT
Found at i:27286691 original size:93 final size:90
Alignment explanation
Indices: 27286547--27286919 Score: 249
Period size: 93 Copynumber: 3.9 Consensus size: 90
27286537 AAGTGTATTA
* * * * *
27286547 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGATATATGTGATAAGGC-CGA
1 ATATGAGATAA-GCCAAATGGCCAATGTAATGAATGTGAACA-TG-TGTATGTGATAAGGCACGA
* *
27286610 ATGGCAATGTGATG-A-TGAAAGTTGTATACT
63 ATGGCAATGTGATGAAGTGAAA-ATG--CA-T
* *
27286640 ATATGTGATAAGCACAAATGGCCAATAG-AATTGAATGTGAACATGTGTATGTGTGATAAGGCAG
1 ATATGAGATAAGC-CAAATGGCCAAT-GTAA-TGAATGTGAACATGTGTA--TGTGATAAGGCAC
*
27286704 GAATGGCCATGTGATGAATGTGAAAATGCAT
61 GAATGGCAATGTGATGAA-GTGAAAATGCAT
* * *
27286735 ATATGAGATAAGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGGA-GAA
1 ATATGAGATAAGCCAAATGGCCAATGTAATGAATGTGAACATGTGTA--TGTGATAAGGCACG-A
* * **
27286799 ATGGCCAAATGTGAAGAAATGTGAACATGTGT
63 ATGG-C-AATGTGATG-AA-GTGAAAATGCAT
* * * * *
27286831 ATGTG-GATAAGGCGAATGGCCAATGTAGATGAATGTGACACATGCATATATGAGATAAGGC-CG
1 ATATGAGATAAGCCAAATGGCCAATGTA-ATGAATGTGA-ACATG--TGTATGTGATAAGGCACG
27286894 AATGGCCAATTGTGATGAATGTGAAA
62 AATGG-CAA-TGTGATGAA-GTGAAA
27286920 GTGTATATTG
Statistics
Matches: 234, Mismatches: 25, Indels: 40
0.78 0.08 0.13
Matches are distributed among these distances:
92 3 0.01
93 62 0.26
94 26 0.11
95 62 0.26
96 55 0.24
97 16 0.07
98 2 0.01
99 8 0.03
ACGTcount: A:0.36, C:0.09, G:0.29, T:0.26
Consensus pattern (90 bp):
ATATGAGATAAGCCAAATGGCCAATGTAATGAATGTGAACATGTGTATGTGATAAGGCACGAATG
GCAATGTGATGAAGTGAAAATGCAT
Found at i:27286745 original size:95 final size:93
Alignment explanation
Indices: 27286547--27286960 Score: 325
Period size: 95 Copynumber: 4.4 Consensus size: 93
27286537 AAGTGTATTA
* * * * *
27286547 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-A-GTGATATATGTGATAAGGC-CG
1 ATATG-GATAA-GCCGAATGGCCAATGTAATGAATGTGAACATGTG-TATGTGTGATAAGGCAGG
* *
27286609 AATGG-CAATGTGATG-A--TGAAAGTTGTATACT
63 AATGGCCAATGTGATGAATGTGAAA-ATG--CA-T
*
27286640 ATATGTGATAAGCACAAATGGCCAATAG-AATTGAATGTGAACATGTGTATGTGTGATAAGGCAG
1 ATATG-GATAAGC-CGAATGGCCAAT-GTAA-TGAATGTGAACATGTGTATGTGTGATAAGGCAG
27286704 GAATGGCC-ATGTGATGAATGTGAAAATGCAT
62 GAATGGCCAATGTGATGAATGTGAAAATGCAT
* * *
27286735 ATATGAGATAAGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGGAGAAA
1 ATATG-GATAAGCCGAATGGCCAATGTAATGAATGTGAACATGTGTATGTGTGATAAGGCAGGAA
* * **
27286800 TGGCCAAATGTGAAGAAATGTGAACATGTGT
65 TGGCC-AATGTGATG-AATGTGAAAATGCAT
* * ** * * *
27286831 ATGTGGATAAGGCGAATGGCCAATGTAGATGAATGTGACACATGCATATATGAGATAAGGC-CGA
1 ATATGGATAAGCCGAATGGCCAATGTA-ATGAATGTGA-ACATGTGTATGTGTGATAAGGCAGGA
* *
27286895 ATGGCCAATTGTGATGAATGTGAAAGTGTAT
64 ATGGCCAA-TGTGATGAATGTGAAAATGCAT
*
27286926 AT-TGTGA-AAGGCTCGAAT-GCCAATGTGATG-ATGTG
1 ATATG-GATAA-GC-CGAATGGCCAATGTAATGAATGTG
27286961 GATAGTGTAT
Statistics
Matches: 269, Mismatches: 32, Indels: 40
0.79 0.09 0.12
Matches are distributed among these distances:
92 2 0.01
93 67 0.25
94 30 0.11
95 82 0.30
96 62 0.23
97 19 0.07
98 2 0.01
99 5 0.02
ACGTcount: A:0.35, C:0.09, G:0.29, T:0.27
Consensus pattern (93 bp):
ATATGGATAAGCCGAATGGCCAATGTAATGAATGTGAACATGTGTATGTGTGATAAGGCAGGAAT
GGCCAATGTGATGAATGTGAAAATGCAT
Found at i:27286841 original size:142 final size:139
Alignment explanation
Indices: 27286550--27286932 Score: 444
Period size: 142 Copynumber: 2.7 Consensus size: 139
27286540 TGTATTAATA
* * * *
27286550 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATGTGATAAGGCCGAATGG
1 TGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAAAATGCATATATGAGATAAGGCCGAATGG
*
27286614 -CAATGTGATG-A--TGAAAGTTGTATACTATATGTGATAAGCACAAATGGCCAATAGAATTGAA
65 CCAATGTGATGAATGTGAAA--TG--T-GTATATGTGATAAGCACAAATGGCCAATAGAA-TGAA
27286675 TGTGAACATGTGTATG
124 TGTGAACATGTGTATG
27286691 TGTGATAAGGCAGGAATGGCC-ATGTGATGAATGTGAAAATGCATATATGAGATAA-GCCGAATG
1 TGTGATAAGGC--GAATGGCCAATGTGATGAATGTGAAAATGCATATATGAGATAAGGCCGAATG
* * * *
27286754 GCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGGAGAAATGGCCAAATGTGAA-GAAA
64 GCCAATGTGATGAATGTGAA-ATGTGTATATGTGATAA-GCACAAATGGCC-AAT-AGAATG-AA
27286818 TGTGAACATGTGTATG
124 TGTGAACATGTGTATG
*
27286834 TG-GATAAGGCGAATGGCCAATGTAGATGAATGTGACACATGCATATATGAGATAAGGCCGAATG
1 TGTGATAAGGCGAATGGCCAATGT-GATGAATGTGA-AAATGCATATATGAGATAAGGCCGAATG
27286898 GCCAATTGTGATGAATGTGAAA-GTGTATATTGTGA
64 GCCAA-TGTGATGAATGTGAAATGTGTATA-TGTGA
27286933 AAGGCTCGAA
Statistics
Matches: 214, Mismatches: 10, Indels: 33
0.83 0.04 0.13
Matches are distributed among these distances:
140 9 0.04
141 53 0.25
142 60 0.28
143 48 0.22
144 24 0.11
145 19 0.09
146 1 0.00
ACGTcount: A:0.35, C:0.09, G:0.29, T:0.27
Consensus pattern (139 bp):
TGTGATAAGGCGAATGGCCAATGTGATGAATGTGAAAATGCATATATGAGATAAGGCCGAATGGC
CAATGTGATGAATGTGAAATGTGTATATGTGATAAGCACAAATGGCCAATAGAATGAATGTGAAC
ATGTGTATG
Found at i:27287576 original size:93 final size:91
Alignment explanation
Indices: 27287417--27287769 Score: 319
Period size: 93 Copynumber: 3.7 Consensus size: 91
27287407 CCTACACTGC
* * *
27287417 CACATCCATCACATTGG-CATTCGGCTTATCCACATATATACACTTCACATTCATCACATTGGCC
1 CACAT-CATCACATTGGCCATTC-GCCTAT-CACATATACACATTTCACATTCATCACATTGGCC
* * *
27287481 ATTCGGCATTATCTCATATATGC-CATGTT
63 ATTCGGCATTATCACACAT-TACACATGTT
*
27287510 CACTAATTC-TCACATTGGCCATTCGCCTATCACACATACACATGTTCACA-TCATCACATTGGC
1 CAC--A-TCATCACATTGGCCATTCGCCTATCACATATACACAT-TTCACATTCATCACATTGGC
*
27287573 CATTCGGCCTTATCACACATTACACATGTT
62 CATTCGGCATTATCACACATTACACATGTT
*
27287603 CACATCATCACAATTGGCCATTCGCCTTATCTCATATATGC-CATTTCACATTCATCACATTGGC
1 CACATCATCAC-ATTGGCCATTCGCC-TATCACATATA--CACATTTCACATTCATCACATTGGC
* *
27287667 AATTCGGCCTTA-CACAC--T-CACATGTT
62 CATTCGGCATTATCACACATTACACATGTT
* * *
27287693 CACATTCATCAACATTGGCGCTTTGGCCTTAATCACATATATATACACTTTCACATTCATCACAA
1 CACA-TCATC-ACATTGGC-CATTCGCC-T-ATCAC--ATATACACA-TTTCACATTCATCAC-A
27287758 GTTGGCCATTCG
57 -TTGGCCATTCG
27287770 CGTTTCACCA
Statistics
Matches: 222, Mismatches: 16, Indels: 40
0.80 0.06 0.14
Matches are distributed among these distances:
90 14 0.06
91 17 0.08
92 26 0.12
93 76 0.34
94 49 0.22
95 28 0.13
96 2 0.01
97 10 0.05
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.32
Consensus pattern (91 bp):
CACATCATCACATTGGCCATTCGCCTATCACATATACACATTTCACATTCATCACATTGGCCATT
CGGCATTATCACACATTACACATGTT
Found at i:27287608 original size:47 final size:49
Alignment explanation
Indices: 27287417--27287769 Score: 338
Period size: 47 Copynumber: 7.5 Consensus size: 49
27287407 CCTACACTGC
* * *
27287417 CACATCCATCACATTGG-CATTCGG-CTTATC-CACATATATACA-CTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATGTT
* * * *
27287462 CACATTCATCACATTGGCCATTCGGCATTATCTCATATATGC-CATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATGTT
27287510 CACTAATTC-TCACATTGGCCATTC-GCC-TATCACAC--ATACACATGTT
1 CAC--ATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATGTT
27287556 CACA-TCATCACATTGGCCATTCGGCCTTATCACACAT-TACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATGTT
* * *
27287603 CACA-TCATCACAATTGGCCATTC-GCCTTATCTCATATATGC-CAT-TT
1 CACATTCATCAC-ATTGGCCATTCGGCCTTATCACACATATACACATGTT
*
27287649 CACATTCATCACATTGGCAATTCGGCCTTA-CACAC---T-CACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATGTT
* * *
27287693 CACATTCATCAACATTGGCGC-TTTGGCCTTAATCACATATATATACACT-TT
1 CACATTCATC-ACATTGGC-CATTCGGCCTT-ATCACACATATACACA-TGTT
27287744 CACATTCATCACAAGTTGGCCATTCG
1 CACATTCATCAC-A-TTGGCCATTCG
27287770 CGTTTCACCA
Statistics
Matches: 257, Mismatches: 21, Indels: 53
0.78 0.06 0.16
Matches are distributed among these distances:
42 1 0.00
43 6 0.02
44 28 0.11
45 38 0.15
46 44 0.17
47 66 0.26
48 26 0.10
49 15 0.06
50 7 0.03
51 17 0.07
52 9 0.04
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.32
Consensus pattern (49 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATGTT
Found at i:27294303 original size:56 final size:56
Alignment explanation
Indices: 27294217--27294336 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
27294207 ACAAGGGATG
27294217 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
27294273 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
27294329 ATGGGCAA
1 ATGGGCAA
27294337 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:27295847 original size:47 final size:47
Alignment explanation
Indices: 27295793--27296341 Score: 768
Period size: 47 Copynumber: 11.6 Consensus size: 47
27295783 TATTTGAATA
* *
27295793 AATGTGAAAGTGCATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * **
27295840 AATGTGAAAGTGTATATATATGTCATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
27295889 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
27295938 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
27295985 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
27296034 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
27296081 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
27296128 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
27296175 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
27296222 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
27296269 AATGTGAAAGTGTATATATGTGATAA-GCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
27296315 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
27296342 TCCCGAAGGG
Statistics
Matches: 468, Mismatches: 27, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
46 44 0.09
47 288 0.62
49 135 0.29
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:27298709 original size:39 final size:41
Alignment explanation
Indices: 27298609--27298711 Score: 106
Period size: 40 Copynumber: 2.6 Consensus size: 41
27298599 TCGAATGATG
* *
27298609 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACAATA
** * * *
27298649 TCCGAACTAAGATCCGAAGGCATTTGTGC-GAGTTACTAAT-
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGAC-AATA
27298689 TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATT
27298712 GGTGAATGTG
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
39 11 0.22
40 31 0.61
41 9 0.18
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (41 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACAATA
Found at i:27298888 original size:96 final size:94
Alignment explanation
Indices: 27298714--27299360 Score: 944
Period size: 96 Copynumber: 6.8 Consensus size: 94
27298704 AAGGCATTGG
*
27298714 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TA
*
27298779 TATATGTGATAAGGCCTAATGGCCAATGTGA
64 TATATGTGATAAGGCCGAATGGCCAATGTGA
* *
27298810 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
27298875 TATATGTGATAAGGCCTAATGGCCGATGTGA
64 TATATGTGATAAGGCCGAATGGCCAATGTGA
* *
27298906 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
27298971 TATATGTGATAAGGCCGAATGGCCAATGTGA
64 TATATGTGATAAGGCCGAATGGCCAATGTGA
*
27299002 TGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA-TGT
1 TGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGT
* *
27299066 GTATGTGTGATAAGGCCGAATGGCCAATGTGA
63 ATATATGTGATAAGGCCGAATGGCCAATGTGA
* * * *
27299098 TGAATGTGAAAATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
*
27299162 ATGTGTGATAAGGCCGAATGGCCAATGTGA
65 ATATGTGATAAGGCCGAATGGCCAATGTGA
* * *
27299192 TGAATGTGAACA-TGTGTATGTGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAACA-TGCA
1 TGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTA
*
27299254 TATATGAGATAAGGCCGAATGGCCAATGTGA
64 TATATGTGATAAGGCCGAATGGCCAATGTGA
* *
27299285 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
27299350 AATGTGATAAG
66 TATGTGATAAG
27299361 TCCCGAAGGG
Statistics
Matches: 517, Mismatches: 27, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.00
93 86 0.17
94 139 0.27
95 1 0.00
96 243 0.47
97 1 0.00
98 46 0.09
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (94 bp):
TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATGGCCAATGTGA
Found at i:27298895 original size:47 final size:47
Alignment explanation
Indices: 27298714--27299360 Score: 944
Period size: 47 Copynumber: 13.6 Consensus size: 47
27298704 AAGGCATTGG
*
27298714 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
*
27298761 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGA
1 TGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGA
* *
27298810 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGA
* *
27298859 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
* *
27298906 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGA
27298955 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
*
27299002 TGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCAATGTGA
1 TGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGA
* *
27299051 TGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
* * *
27299098 TGAATGTGAAAATGCATATATGAGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
* *
27299145 TGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
* *
27299192 TGAATGTGAACA-TGTGTATGTGTGATAAGG-CGAATGGCCAATGTGA
1 TGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
* *
27299238 TGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
27299285 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
* * *
27299332 TGGATGTGGAAGTGTATAAATGTGATAAG
1 TGAATGTGAAAGTGTATATATGTGATAAG
27299361 TCCCGAAGGG
Statistics
Matches: 565, Mismatches: 24, Indels: 22
0.92 0.04 0.04
Matches are distributed among these distances:
46 44 0.08
47 333 0.59
48 1 0.00
49 186 0.33
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
Found at i:27301778 original size:21 final size:21
Alignment explanation
Indices: 27301754--27301827 Score: 60
Period size: 21 Copynumber: 3.3 Consensus size: 21
27301744 AAGTGTATAT
27301754 ATGTGATAAGGCTAATGGCCA
1 ATGTGATAAGGCTAATGGCCA
* ***
27301775 ATGTGATGAATGTG-AAAGTGTATA
1 ATGTGAT-AA-G-GCTAA-TGGCCA
27301799 TATGTGATAAGGCTAATGGCCA
1 -ATGTGATAAGGCTAATGGCCA
27301821 ATGTGAT
1 ATGTGAT
27301828 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 12
0.66 0.14 0.20
Matches are distributed among these distances:
21 14 0.36
22 6 0.15
23 6 0.15
24 6 0.15
25 7 0.18
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (21 bp):
ATGTGATAAGGCTAATGGCCA
Found at i:27301880 original size:47 final size:46
Alignment explanation
Indices: 27301736--27302360 Score: 866
Period size: 47 Copynumber: 13.6 Consensus size: 46
27301726 AAGGCATTGG
*
27301736 TGAAT-TGAAAGTGTATATATGTGATAAGG-CTAATGGCCAATGTGA
1 TGAATGTGAAAGTGTATAT-TGTGATAAGGCCGAATGGCCAATGTGA
*
27301781 TGAATGTGAAAGTGTATATATGTGATAAGG-CTAATGGCCAATGTGA
1 TGAATGTGAAAGTGTATAT-TGTGATAAGGCCGAATGGCCAATGTGA
* *
27301827 TGAATGTGAAAGTGTATAATTGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTGTAT-ATTGTGATAAGGCCGAATGGCCAATGTGA
* *
27301874 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTGTATAT-TGTGATAAGGCCGAATGGCCAATGTGA
* *
27301921 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTGTATAT-TGTGATAAGGCCGAATGGCCAATGTGA
27301968 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAAAGTGTATAT-TGTGATAAGGCCGAATGGCCAATGTGA
27302015 TGAATGTGAAAGTGTATATATGTGATAA-G--GAATGGCCAATGTGA
1 TGAATGTGAAAGTGTATAT-TGTGATAAGGCCGAATGGCCAATGTGA
*
27302059 TGAATGTGAACATGTGTAT-GTGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAA-A-GTGTATATTGTGATAAGGCCGAATGGCCAATGTGA
* *
27302106 TGAATGTGAAA-TGCATA-TATGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAAAGTGTATATTGTGATAAGGCCGAATGGCCAATGTGA
*
27302150 TGAATGTGAACATGTGTAT-GTGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAA-A-GTGTATATTGTGATAAGGCCGAATGGCCAATGTGA
*
27302197 TGAATGTGAACA-TGTAT-GTGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAA-AGTGTATATTGTGATAAGGCCGAATGGCCAATGTGA
*
27302242 TGAATGTGAACA-TGTATA-TGAGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAA-AGTGTATATTGTGATAAGGCCGAATGGCCAATGTGA
27302287 TGAATGTGAAAGTGTATA-TGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAAAGTGTATATTGTGATAAGGCCGAATGGCCAATGTGA
* * *
27302332 TGGATGTGGAAGTGTATAAATGTGATAAG
1 TGAATGTGAAAGTGTAT-ATTGTGATAAG
27302361 TCCCGAAGGG
Statistics
Matches: 550, Mismatches: 12, Indels: 34
0.92 0.02 0.06
Matches are distributed among these distances:
44 74 0.13
45 141 0.26
46 78 0.14
47 257 0.47
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (46 bp):
TGAATGTGAAAGTGTATATTGTGATAAGGCCGAATGGCCAATGTGA
Found at i:27302098 original size:91 final size:91
Alignment explanation
Indices: 27301736--27302360 Score: 805
Period size: 91 Copynumber: 6.8 Consensus size: 91
27301726 AAGGCATTGG
27301736 TGAAT-TGAAAGTGTATATATGTGATAAGGCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 TGAATGTGAAAGTGTATATATGTGATAAGG--AATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
27301800 ATGTGATAAGG-CTAATGGCCAATGTGA
64 ATGTGATAAGGCCGAATGGCCAATGTGA
*
27301827 TGAATGTGAAAGTGTATA-ATTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 TGAATGTGAAAGTGTATATA-TGTGATAAGG---AATGGCCAATGTGATGAATGTGAAAGTGTAT
* *
27301891 ATATGTGATAAGGCCTAATGGCCGATGTGA
62 ATATGTGATAAGGCCGAATGGCCAATGTGA
*
27301921 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TGAATGTGAAAGTGTATATATGTGATAAGG---AATGGCCAATGTGATGAATGTGAAAGTGTATA
27301986 TATGTGATAAGGCCGAATGGCCAATGTGA
63 TATGTGATAAGGCCGAATGGCCAATGTGA
* *
27302015 TGAATGTGAAAGTGTATATATGTGATAAGGAATGGCCAATGTGATGAATGTGAACA-TGTGTATG
1 TGAATGTGAAAGTGTATATATGTGATAAGGAATGGCCAATGTGATGAATGTGAA-AGTGTATATA
27302079 TGTGATAAGGCCGAATGGCCAATGTGA
65 TGTGATAAGGCCGAATGGCCAATGTGA
* *
27302106 TGAATGTGAAA-TGCATATA--TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 TGAATGTGAAAGTGTATATATGTGATAA-G--GAATGGCCAATGTGATGAATGTGAA-AGTGTAT
*
27302167 ATGTGTGATAAGGCCGAATGGCCAATGTGA
62 ATATGTGATAAGGCCGAATGGCCAATGTGA
*
27302197 TGAATGTGAACA-TG--TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--
1 TGAATGTGAA-AGTGTATATATGTGATAA-G--GAATGGCCAATGTGATGAATGTGAA-AGTGTA
*
27302256 TATATGAGATAAGGCCGAATGGCCAATGTGA
61 TATATGTGATAAGGCCGAATGGCCAATGTGA
* *
27302287 TGAATGTGAAAGTG--TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATA
1 TGAATGTGAAAGTGTATATATGTGATAA-G--GAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
27302350 AATGTGATAAG
63 TATGTGATAAG
27302361 TCCCGAAGGG
Statistics
Matches: 502, Mismatches: 16, Indels: 31
0.91 0.03 0.06
Matches are distributed among these distances:
88 6 0.01
89 3 0.01
90 91 0.18
91 145 0.29
92 76 0.15
93 45 0.09
94 135 0.27
95 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (91 bp):
TGAATGTGAAAGTGTATATATGTGATAAGGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGA
Found at i:27304741 original size:39 final size:40
Alignment explanation
Indices: 27304641--27304824 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
27304631 TCGAATGATG
* * *
27304641 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
**
27304680 ATCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
27304721 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
27304760 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
27304799 AACCGGGCTAAGTCCCGAAGAGCATT
1 -TCCGGGCTAAGTCCCGAAG-GCATT
27304825 CATGCTAGTG
Statistics
Matches: 119, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
39 34 0.29
40 70 0.59
41 15 0.13
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:27304845 original size:40 final size:40
Alignment explanation
Indices: 27304767--27304995 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
27304757 AAGTCCAGGT
** * * *
27304767 TAAGTCCCGAAG-GCATTTGTGCGAGTTACTATAACCGGGC
1 TAAGTCCCGAAGAGCATTCATGCTAGTGA-TATATCCGGGC
*
27304807 TAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGC
1 TAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGC
* *
27304847 TAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGC
1 TAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGC
* * **
27304887 TAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCATGC
1 TAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGC
** * * *
27304927 TAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGC
1 TAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGC
* * *
27304967 TAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TAAGTCCCGAAGAGCATTCATGCTAGTGA
27304996 CGTGTATTCG
Statistics
Matches: 164, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
40 152 0.93
41 12 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGC
Found at i:27305618 original size:47 final size:47
Alignment explanation
Indices: 27305549--27306026 Score: 653
Period size: 47 Copynumber: 10.1 Consensus size: 47
27305539 TGAATATTGA
* *
27305549 GATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTATATATGT
* *
27305596 GATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTATATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--TATATATGT
* * * *
27305645 GATAAGGCCTAATGGCCGATGTGATGAATGTGAACATGTGTATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGT
27305692 GATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--TATATATGT
*
27305741 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGT
* *
27305788 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGT
* *
27305835 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGT
* *
27305882 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGT
* * *
27305929 GATAACGTCGAATGGCCAATGTGATGAATGTGAA-A-GTGTATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGT
* * *
27305974 GATAAGGCCGAATGGCCAATGTGATGGATGTGGAA-GTGTATAAATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATGTATATATGT
27306021 GATAAG
1 GATAAG
27306027 TCCCGAAGGG
Statistics
Matches: 393, Mismatches: 29, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
45 35 0.09
46 5 0.01
47 263 0.67
49 88 0.22
50 2 0.01
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGT
Found at i:27305714 original size:96 final size:96
Alignment explanation
Indices: 27305549--27306026 Score: 699
Period size: 96 Copynumber: 5.1 Consensus size: 96
27305539 TGAATATTGA
* * * *
27305549 GATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCC
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATATGTGATAAGGCCGAATGGCC
*
27305613 GATGTGATGAATGTGAAAGTGTATATATATGT
65 AATGTGATGAATGTGAAAGTGTATATATATGT
* * *
27305645 GATAAGGCCTAATGGCCGATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATATGTGATAAGGCCGAATGGCCA
27305710 ATGTGATGAATGTGAAAGTGTATATATATGT
66 ATGTGATGAATGTGAAAGTGTATATATATGT
27305741 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATATGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATATGTGATAAGGCCGAATGGCCA
* *
27305806 ATGTGATGAATGTGAACA-TG--CATATATGA
66 ATGTGATGAATGTGAA-AGTGTATATATATGT
*
27305835 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATATGTGATAAGGCCGAATGGCCA
* *
27305900 ATGTGATGAATGTGAACA-TG--CATATATGA
66 ATGTGATGAATGTGAA-AGTGTATATATATGT
* *
27305929 GATAACGTCGAATGGCCAATGTGATGAATGTGAA-A-GTGTATATGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATATGTGATAAGGCCGAATGGCCA
* *
27305992 ATGTGATGGATGTGGAAGTGTATA-A-ATGT
66 ATGTGATGAATGTGAAAGTGTATATATATGT
27306021 GATAAG
1 GATAAG
27306027 TCCCGAAGGG
Statistics
Matches: 359, Mismatches: 18, Indels: 14
0.92 0.05 0.04
Matches are distributed among these distances:
91 1 0.00
92 51 0.14
93 2 0.01
94 133 0.37
96 170 0.47
97 2 0.01
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (96 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATATGTGATAAGGCCGAATGGCCA
ATGTGATGAATGTGAAAGTGTATATATATGT
Found at i:27305765 original size:22 final size:22
Alignment explanation
Indices: 27305737--27305812 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
27305727 GTGTATATAT
27305737 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
27305759 ATGTGATGAATG-TGAACATGTG-TA
1 ATGTGAT-AAGGCCG-A-ATG-GCCA
27305783 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
27305806 ATGTGAT
1 ATGTGAT
27305813 GAATGTGAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:27310095 original size:42 final size:41
Alignment explanation
Indices: 27310005--27310148 Score: 121
Period size: 42 Copynumber: 3.4 Consensus size: 41
27309995 GTCCTAGATG
* * *
27310005 TGGTCTTACATGTAAA-CAAATATCGATGCCACTGTCCCAGACA
1 TGGTCTTACACG-AAATCAAATA-CGATG-CAATGTCCCAAACA
* *
27310048 AGGTCTTACACGAAATCAAATACGATGTCGATGTCCCAAACA
1 TGGTCTTACACGAAATCAAATACGATG-CAATGTCCCAAACA
* * *
27310090 TGGTCTTACACATAAATCATAAGT-CGATGCCAACGTCCCATACA
1 TGGTCTTACAC-GAAATCA-AA-TACGATG-CAATGTCCCAAACA
*
27310134 TGGTCTTACTCGAAA
1 TGGTCTTACACGAAA
27310149 ACACATATCG
Statistics
Matches: 83, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
42 29 0.35
43 25 0.30
44 28 0.34
45 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (41 bp):
TGGTCTTACACGAAATCAAATACGATGCAATGTCCCAAACA
Found at i:27310128 original size:44 final size:40
Alignment explanation
Indices: 27310026--27310148 Score: 120
Period size: 44 Copynumber: 2.9 Consensus size: 40
27310016 GTAAACAAAT
* *
27310026 ATCGATGCCACTGTCCCAGACAAGGTCTTACACGAAATCAA
1 ATCGATGCCAC-GTCCCAAACATGGTCTTACACGAAATCAA
* * *
27310067 ATACGATGTCGATGTCCCAAACATGGTCTTACACATAAATCATA
1 AT-CGATG-CCACGTCCCAAACATGGTCTTACAC-GAAATCA-A
* *
27310111 AGTCGATGCCAACGTCCCATACATGGTCTTACTCGAAA
1 A-TCGATGCC-ACGTCCCAAACATGGTCTTACACGAAA
27310149 ACACATATCG
Statistics
Matches: 66, Mismatches: 10, Indels: 10
0.77 0.12 0.12
Matches are distributed among these distances:
41 2 0.03
42 24 0.36
43 12 0.18
44 27 0.41
45 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (40 bp):
ATCGATGCCACGTCCCAAACATGGTCTTACACGAAATCAA
Found at i:27317841 original size:68 final size:68
Alignment explanation
Indices: 27317729--27317863 Score: 252
Period size: 68 Copynumber: 2.0 Consensus size: 68
27317719 ACAAAGTAAG
27317729 TTTAAAAGCTTAGTAAGCCATATAAAAATAAAATTACCAAATGAATCAACATCATTTCCATCAAT
1 TTTAAAAGCTTAGTAAGCCATATAAAAATAAAATTACCAAATGAATCAACATCATTTCCATCAAT
27317794 AGC
66 AGC
* *
27317797 TTTAAAAGCTTAGTAAGCCATATACAAATAAAATTACCACATGAATCAACATCATTTCCATCAAT
1 TTTAAAAGCTTAGTAAGCCATATAAAAATAAAATTACCAAATGAATCAACATCATTTCCATCAAT
27317862 AG
66 AG
27317864 GAAAACAATG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.46, C:0.19, G:0.07, T:0.28
Consensus pattern (68 bp):
TTTAAAAGCTTAGTAAGCCATATAAAAATAAAATTACCAAATGAATCAACATCATTTCCATCAAT
AGC
Found at i:27318175 original size:43 final size:43
Alignment explanation
Indices: 27318128--27318284 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
27318118 ATCACATATT
*
27318128 GATGCCGAAAG-CCTAG-CTATGGTCTTACTCGAAATCAAATAAC
1 GATGCC-AAAGTCCTAGAC-ATGGTCTTACTAGAAATCAAATAAC
*
27318171 GATGCCAATGTCCTAGACATGGTCTTACTAGAAATCAAATAAC
1 GATGCCAAAGTCCTAGACATGGTCTTACTAGAAATCAAATAAC
* * *
27318214 GATG-CAAATGTCCTAGACATGGTCTTAC-ACATAATCACATAAT
1 GATGCCAAA-GTCCTAGACATGGTCTTACTAGA-AATCAAATAAC
* * * *
27318257 GATTCCAATGTCCCAGCCATGGTCTTAC
1 GATGCCAAAGTCCTAGACATGGTCTTAC
27318285 ACATAATCAC
Statistics
Matches: 99, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
42 8 0.08
43 87 0.88
44 4 0.04
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.26
Consensus pattern (43 bp):
GATGCCAAAGTCCTAGACATGGTCTTACTAGAAATCAAATAAC
Found at i:27318296 original size:43 final size:42
Alignment explanation
Indices: 27318146--27318293 Score: 188
Period size: 43 Copynumber: 3.4 Consensus size: 42
27318136 AAGCCTAGCT
*
27318146 ATGGTCTTACTCGAAATCAAATAACGATGCCAATGTCCTAGAC
1 ATGGTCTTACAC-AAATCAAATAACGATGCCAATGTCCTAGAC
* *
27318189 ATGGTCTTACTAGAAATCAAATAACGATGCAAATGTCCTAGAC
1 ATGGTCTTAC-ACAAATCAAATAACGATGCCAATGTCCTAGAC
* * * * *
27318232 ATGGTCTTACACATAATCACATAATGATTCCAATGTCCCAGCC
1 ATGGTCTTACACA-AATCAAATAACGATGCCAATGTCCTAGAC
27318275 ATGGTCTTACACATAATCA
1 ATGGTCTTACACA-AATCA
27318294 CATCTCGTTA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
42 2 0.02
43 91 0.98
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (42 bp):
ATGGTCTTACACAAATCAAATAACGATGCCAATGTCCTAGAC
Found at i:27324217 original size:27 final size:27
Alignment explanation
Indices: 27324187--27324291 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 27
27324177 CAATTTTATG
* * *
27324187 AAATGAATGTTTTACCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
*
27324214 AAATGACTATTTTGCCCTTATATGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
**
27324241 GGATGACTGTTTTGCCCTTATATGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
** *
27324268 TGATGACTGTTTTGTCCTTATATG
1 AAATGACTGTTTTGCCCTTATATG
27324292 ATATATGTAT
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.43
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATATGGTA
Found at i:27324259 original size:54 final size:54
Alignment explanation
Indices: 27324189--27324291 Score: 143
Period size: 54 Copynumber: 1.9 Consensus size: 54
27324179 ATTTTATGAA
*
27324189 ATGAATGTTTTACCCTTATGTGGTAAAATGACTATTTTGCCCTTATATGGTAGG
1 ATGAATGTTTTACCCTTATATGGTAAAATGACTATTTTGCCCTTATATGGTAGG
* * ** * *
27324243 ATGACTGTTTTGCCCTTATATGGTATGATGACTGTTTTGTCCTTATATG
1 ATGAATGTTTTACCCTTATATGGTAAAATGACTATTTTGCCCTTATATG
27324292 ATATATGTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.22, C:0.14, G:0.20, T:0.44
Consensus pattern (54 bp):
ATGAATGTTTTACCCTTATATGGTAAAATGACTATTTTGCCCTTATATGGTAGG
Found at i:27328848 original size:34 final size:34
Alignment explanation
Indices: 27328809--27328878 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
27328799 TGCAACTGAG
*
27328809 TTCATTTATTAAACCGTTCTCAAATGCTATCACA
1 TTCATTTATTAAACCATTCTCAAATGCTATCACA
27328843 TTCATTTATTAAACCATTCTCAAATGCTATCACA
1 TTCATTTATTAAACCATTCTCAAATGCTATCACA
27328877 TT
1 TT
27328879 ATCAATTAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.33, C:0.23, G:0.04, T:0.40
Consensus pattern (34 bp):
TTCATTTATTAAACCATTCTCAAATGCTATCACA
Found at i:27335621 original size:67 final size:66
Alignment explanation
Indices: 27335445--27335630 Score: 166
Period size: 67 Copynumber: 2.8 Consensus size: 66
27335435 CACATGGTGA
* * * *
27335445 ACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGTAGCTCTCTTGTCTACATGTTGT
1 ACACATAGAACCACCCATGCGACCTAGCTACA-TATATCTCGTAGCTCTCTTGTCTACATG-TGT
27335508 CCT
64 CCT
* * * * * *
27335511 TCACCTGGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATG-GT-G
1 ACACATAGAACCACCCATGCGACCTAGCTACATATATCTCGTAGCTCTCTTGTCTACATGTGTCC
27335574 T
66 T
* * *
27335575 ACACATAGTATCACCCAT-CGACCTAGCTACATCATAATGTCTCGTAGCTGTCTTGT
1 ACACATAGAACCACCCATGCGACCTAGCTACAT-AT-A--TCTCGTAGCTCTCTTGT
27335631 ACACATGATG
Statistics
Matches: 97, Mismatches: 17, Indels: 11
0.78 0.14 0.09
Matches are distributed among these distances:
63 14 0.14
64 15 0.15
65 3 0.03
66 22 0.23
67 41 0.42
68 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (66 bp):
ACACATAGAACCACCCATGCGACCTAGCTACATATATCTCGTAGCTCTCTTGTCTACATGTGTCC
T
Found at i:27337702 original size:34 final size:34
Alignment explanation
Indices: 27337664--27337731 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
27337654 CTGCAACTGA
27337664 GTTCATTTATTAAACCATTCTCAAATGCTATCAC
1 GTTCATTTATTAAACCATTCTCAAATGCTATCAC
27337698 GTTCATTTATTAAACCATTCTCAAATGCTATCAC
1 GTTCATTTATTAAACCATTCTCAAATGCTATCAC
27337732 ATTGTCAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (34 bp):
GTTCATTTATTAAACCATTCTCAAATGCTATCAC
Found at i:27345323 original size:157 final size:157
Alignment explanation
Indices: 27345037--27345356 Score: 597
Period size: 157 Copynumber: 2.0 Consensus size: 157
27345027 CCTTTGTCTC
* *
27345037 TGAAAGAGAAAGATGCTATTTGGGTTGTCATTGATTGATTAGCGAAATCAACATATTTCATCCTG
1 TGAAAGAGAAAGATGCTATTTGGGTTGTCATTGATTGATTAACGAAATCAACACATTTCATCCTG
27345102 GTACAAACTAACTTTTTACTTGATAAATTGGTTGAGTTGTATATTTCTAAAATCATTAGATTGCA
66 GTACAAACTAACTTTTTACTTGATAAATTGGTTGAGTTGTATATTTCTAAAATCATTAGATTGCA
27345167 CGGGGTACCAATTTTGATTATTTCGAA
131 CGGGGTACCAATTTTGATTATTTCGAA
27345194 TGAAAGAGAAAGATGCTATTTGGGTTGTCATTGATTGATTAACGAAATCAACACATTTCATCCTG
1 TGAAAGAGAAAGATGCTATTTGGGTTGTCATTGATTGATTAACGAAATCAACACATTTCATCCTG
*
27345259 GTACATACTAACTTTTTACTTGATAAATTGGTTGAGTTGTATATTTCTAAAATCATTAGATTGCA
66 GTACAAACTAACTTTTTACTTGATAAATTGGTTGAGTTGTATATTTCTAAAATCATTAGATTGCA
*
27345324 CGGGGTACCAGTTTTGATTATTTCGAA
131 CGGGGTACCAATTTTGATTATTTCGAA
27345351 T-AAAGA
1 TGAAAGA
27345357 TCTGAAATTC
Statistics
Matches: 159, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
156 5 0.03
157 154 0.97
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.37
Consensus pattern (157 bp):
TGAAAGAGAAAGATGCTATTTGGGTTGTCATTGATTGATTAACGAAATCAACACATTTCATCCTG
GTACAAACTAACTTTTTACTTGATAAATTGGTTGAGTTGTATATTTCTAAAATCATTAGATTGCA
CGGGGTACCAATTTTGATTATTTCGAA
Found at i:27351714 original size:47 final size:47
Alignment explanation
Indices: 27351660--27351918 Score: 428
Period size: 47 Copynumber: 5.5 Consensus size: 47
27351650 TATTTGAATA
27351660 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
27351707 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27351754 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27351801 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
27351848 AATATGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
27351895 GATGTGAAAGTGTATAAATGTGAT
1 AATGTGAAAGTGTATATATGTGAT
27351919 GAGTCCCGAA
Statistics
Matches: 199, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 199 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:27354271 original size:43 final size:43
Alignment explanation
Indices: 27354166--27354449 Score: 292
Period size: 43 Copynumber: 6.7 Consensus size: 43
27354156 AAAAAACTCT
*
27354166 GCTATAGAACATGACCTTTAGCGGCG-TTTCTCACAA-AAA-TCC
1 GCTATAGAACATGACCTTTAGCGGCGCTTT-T-ACAACAAACGCC
* * * **
27354208 GCTATAGACCATAACATTTAGCAACGCTTTTACAACAAACGCC
1 GCTATAGAACATGACCTTTAGCGGCGCTTTTACAACAAACGCC
* * *
27354251 GCTATTGAACATGACCTTTAGTGGCGCTTTTACAAGAAACGCC
1 GCTATAGAACATGACCTTTAGCGGCGCTTTTACAACAAACGCC
* * *
27354294 ACTATAGAACATGGCCTTTAGCGGCGCTTTTACCACAAACGCC
1 GCTATAGAACATGACCTTTAGCGGCGCTTTTACAACAAACGCC
* *
27354337 GCTATAGAACATGGCCTTTAGCGGCGCTTTTACTACAAACGCC
1 GCTATAGAACATGACCTTTAGCGGCGCTTTTACAACAAACGCC
* * * * ** *
27354380 GCTATAGAACGTTAGCTTTAGCGGCACTTCCA-AACAAA--AC
1 GCTATAGAACATGACCTTTAGCGGCGCTTTTACAACAAACGCC
* * *
27354420 GCTAAAGAACAAGACTTTTAGCGGCGCTTT
1 GCTATAGAACATGACCTTTAGCGGCGCTTT
27354450 AGTGAAAAAC
Statistics
Matches: 200, Mismatches: 39, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
40 23 0.12
41 4 0.02
42 30 0.15
43 143 0.71
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
GCTATAGAACATGACCTTTAGCGGCGCTTTTACAACAAACGCC
Found at i:27354884 original size:21 final size:21
Alignment explanation
Indices: 27354858--27354903 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
27354848 TACTCTACTT
* *
27354858 TGCTTCTCTCGCTGCTGCCTC
1 TGCTTCCCTCACTGCTGCCTC
27354879 TGCTTCCCTCACTGCTGCCTC
1 TGCTTCCCTCACTGCTGCCTC
27354900 TGCT
1 TGCT
27354904 CTATGTTGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.02, C:0.43, G:0.17, T:0.37
Consensus pattern (21 bp):
TGCTTCCCTCACTGCTGCCTC
Found at i:27359373 original size:9 final size:9
Alignment explanation
Indices: 27359354--27359424 Score: 65
Period size: 9 Copynumber: 7.9 Consensus size: 9
27359344 TGTATTACAC
*
27359354 AAGTTAAGT
1 AAGTTATGT
*
27359363 AAGTTTTGT
1 AAGTTATGT
27359372 AAGTTATGT
1 AAGTTATGT
27359381 AAGTTATG-
1 AAGTTATGT
* *
27359389 ATA-TGATAT
1 A-AGTTATGT
*
27359398 ACATTTATGT
1 A-AGTTATGT
27359408 AAGTTATGT
1 AAGTTATGT
27359417 AAGTTATG
1 AAGTTATG
27359425 ATATGATATA
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
8 4 0.08
9 41 0.82
10 5 0.10
ACGTcount: A:0.35, C:0.01, G:0.20, T:0.44
Consensus pattern (9 bp):
AAGTTATGT
Found at i:27359411 original size:36 final size:36
Alignment explanation
Indices: 27359369--27359455 Score: 151
Period size: 36 Copynumber: 2.5 Consensus size: 36
27359359 AAGTAAGTTT
27359369 TGTAAGTTATGTAAGTTATGATATGATATACATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATACATTTA
*
27359405 TGTAAGTTATGTAAGTTATGATATGATATATATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATACATTTA
27359441 TGT-A-TTATGTAAGTT
1 TGTAAGTTATGTAAGTT
27359456 TTTTAAGTTT
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
34 11 0.22
35 1 0.02
36 38 0.76
ACGTcount: A:0.34, C:0.01, G:0.17, T:0.47
Consensus pattern (36 bp):
TGTAAGTTATGTAAGTTATGATATGATATACATTTA
Found at i:27360850 original size:46 final size:46
Alignment explanation
Indices: 27360775--27360949 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
27360765 TGTAACCCGC
* * * *
27360775 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTACAT
* *
27360821 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTACAT
* * * *
27360871 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTACAT
27360914 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
27360950 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 7 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTACAT
Done.