Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 91 of 325
Found at i:29021169 original size:22 final size:22
Alignment explanation
Indices: 29021141--29021186 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
29021131 TTTGAGCTGC
29021141 TATGGACTTAAAAGTGGCTATG
1 TATGGACTTAAAAGTGGCTATG
29021163 TATGGACTTAAAAGTGGCTATG
1 TATGGACTTAAAAGTGGCTATG
29021185 TA
1 TA
29021187 ATTTAAGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.33
Consensus pattern (22 bp):
TATGGACTTAAAAGTGGCTATG
Found at i:29026988 original size:48 final size:48
Alignment explanation
Indices: 29026924--29027164 Score: 412
Period size: 48 Copynumber: 5.0 Consensus size: 48
29026914 CAAGATAAAT
* * * *
29026924 ATATATATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
29026972 ATATGTATATGTGGTAAAG-CGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
29027019 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
29027067 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
29027115 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
29027163 AT
1 AT
29027165 GTGTGTATAT
Statistics
Matches: 183, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 45 0.25
48 138 0.75
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:29027195 original size:143 final size:142
Alignment explanation
Indices: 29026924--29027199 Score: 410
Period size: 143 Copynumber: 1.9 Consensus size: 142
29026914 CAAGATAAAT
*
29026924 ATATATATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
* * * *
29026989 AGCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
66 AGCGAATGGCTAGTGTGAAATATGTAGGAGATATGTATATATGGT-AAGCCGAATGCCAAATGTG
29027054 AAATATATATGAG
130 AAATATATATGAG
* * *
29027067 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
* * * *
29027132 AGCCGAATGGCTAGTGTGAAATATGTAGGAGATGTGTGTATATTGT-GGCCGAATGACCAAATGT
66 AG-CGAATGGCTAGTGTGAAATATGTAGGAGATATGTATATATGGTAAGCCGAATG-CCAAATGT
29027196 GAAA
129 GAAA
29027200 GGTGTGTATT
Statistics
Matches: 119, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
142 8 0.07
143 73 0.61
144 38 0.32
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (142 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
AGCGAATGGCTAGTGTGAAATATGTAGGAGATATGTATATATGGTAAGCCGAATGCCAAATGTGA
AATATATATGAG
Found at i:29027402 original size:37 final size:36
Alignment explanation
Indices: 29027305--29027441 Score: 238
Period size: 36 Copynumber: 3.8 Consensus size: 36
29027295 GGAAATATAT
29027305 TCCGGGTAAGACCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCGATGACTACGTGTGGAGATTATG
29027341 TCCGGGTAAGACCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCGATGACTACGTGTGGAGATTATG
* *
29027377 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGA-CCGATGACTACGTGTGGAGATTATG
*
29027414 TCCGGGTAAGACCGATAACTACGTGTGG
1 TCCGGGTAAGACCGATGACTACGTGTGG
29027442 GGACTATTCG
Statistics
Matches: 96, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
36 62 0.65
37 34 0.35
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.26
Consensus pattern (36 bp):
TCCGGGTAAGACCGATGACTACGTGTGGAGATTATG
Found at i:29027425 original size:73 final size:72
Alignment explanation
Indices: 29027307--29027441 Score: 243
Period size: 73 Copynumber: 1.9 Consensus size: 72
29027297 AAATATATTC
*
29027307 CGGGTAAGACCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCGATGACTACGTGTGGAGA
1 CGGGTAAGACCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCGATAACTACGTGTGGAGA
29027372 TTATGTT
66 TTATGTT
*
29027379 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCGATAACTACGTGTGG
1 CGGGTAAGA-CCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCGATAACTACGTGTGG
29027442 GGACTATTCG
Statistics
Matches: 60, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
72 9 0.15
73 51 0.85
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.25
Consensus pattern (72 bp):
CGGGTAAGACCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCGATAACTACGTGTGGAGA
TTATGTT
Found at i:29035170 original size:39 final size:40
Alignment explanation
Indices: 29035045--29035229 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
29035035 GCTACTCGTT
*
29035045 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
29035085 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
29035125 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
29035164 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
29035205 CAAA-GCCTTCGGGACTTAGCTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
29035230 CATCATTCGA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 77 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:29035213 original size:79 final size:81
Alignment explanation
Indices: 29035045--29035229 Score: 202
Period size: 79 Copynumber: 2.3 Consensus size: 81
29035035 GCTACTCGTT
* *
29035045 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTG
* *
29035109 GATTTAGTAACTCGCAC
65 GATATAGTAACTAGCAC
* * *
29035126 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGTACAAATGCCTTC-GGATCTTAGTCC-
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACCT
* *
29035187 GGATATGGTCACTTAGCA-
64 GGATATAGTAAC-TAGCAC
*
29035205 CAAAGCCTTCGGGACTTAGCTCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
29035230 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
78 3 0.03
79 56 0.64
80 26 0.30
81 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGG
ATATAGTAACTAGCAC
Found at i:29036519 original size:23 final size:23
Alignment explanation
Indices: 29036468--29036524 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 23
29036458 AAAGGATGGA
29036468 CACATTTT-TTTTCTTTTGTTTT
1 CACATTTTCTTTTCTTTTGTTTT
*
29036490 CATCATTTTCTTTCTCTTTTTTTTT
1 CA-CATTTTCTTT-TCTTTTGTTTT
29036515 C-CA-TTTCTTT
1 CACATTTTCTTT
29036525 ATTACTAACT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
22 9 0.29
23 8 0.26
24 3 0.10
25 11 0.35
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (23 bp):
CACATTTTCTTTTCTTTTGTTTT
Found at i:29043081 original size:40 final size:40
Alignment explanation
Indices: 29043037--29043216 Score: 172
Period size: 40 Copynumber: 4.5 Consensus size: 40
29043027 GCTACTCATT
* *
29043037 CAAATGACTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
29043077 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAAGTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
29043117 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
29043156 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
**
29043197 CAAA-GCCTTTAGGACTTAGC
1 CAAATGCCTTCGGGACTTAGC
29043217 TCGGACATCA
Statistics
Matches: 116, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.26
40 70 0.60
41 14 0.12
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:29043155 original size:39 final size:40
Alignment explanation
Indices: 29043037--29043182 Score: 190
Period size: 40 Copynumber: 3.7 Consensus size: 40
29043027 GCTACTCATT
* *
29043037 CAAATGACTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
29043077 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAGTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
29043117 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
29043156 CAAATGCCTTC-GGATCTTAGTCCGGAT
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT
29043183 ATGGTCACTT
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.02
39 32 0.35
40 56 0.61
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:29044495 original size:23 final size:24
Alignment explanation
Indices: 29044462--29044506 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
29044452 AGGATGGACA
*
29044462 CATTTTTTTTCT-TTTGTTTTCAT
1 CATTTTCTTTCTCTTTGTTTTCAT
*
29044485 CATTTTCTTTCTCTTTTTTTTC
1 CATTTTCTTTCTCTTTGTTTTC
29044507 CATTTCTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.07, C:0.18, G:0.02, T:0.73
Consensus pattern (24 bp):
CATTTTCTTTCTCTTTGTTTTCAT
Found at i:29045786 original size:39 final size:39
Alignment explanation
Indices: 29045729--29045842 Score: 174
Period size: 39 Copynumber: 2.9 Consensus size: 39
29045719 GTGCTGAGAT
* * * *
29045729 TGTATTCGGGTTAGAGTCCCGCAGGCTTCATGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
29045768 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
* *
29045807 TGTGTCCGGGCTAAAGACCCGCAGGCTTCGTGCTGG
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
29045843 TGCTGGTAAT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 69 1.00
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
Found at i:29048423 original size:25 final size:25
Alignment explanation
Indices: 29048373--29048425 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
29048363 TGTGTAACAA
* *
29048373 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
29048398 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
29048423 CAA
1 CAA
29048426 GTTCTTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:29051297 original size:39 final size:39
Alignment explanation
Indices: 29051253--29051366 Score: 183
Period size: 39 Copynumber: 2.9 Consensus size: 39
29051243 GTGCTGAGAT
* *
29051253 TGTATCCGGGTTAGAGTCCCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
*
29051292 TGTATCCGGGCTAAAGTCTCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
* *
29051331 TGTGTCCGGGCTAAAGACCCGCAGGCTTCGTGCTGG
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
29051367 TGCTGGTAAT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 69 1.00
ACGTcount: A:0.18, C:0.25, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
Found at i:29053927 original size:25 final size:25
Alignment explanation
Indices: 29053877--29053929 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
29053867 TGCGTAACAA
* *
29053877 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
29053902 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
29053927 CAA
1 CAA
29053930 GTTCTTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:29056849 original size:39 final size:39
Alignment explanation
Indices: 29056752--29056902 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
29056742 GTGCTGAGAT
* *
29056752 TGTATCCGGGTTAGAGT-CCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
29056790 TGTAT-CGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
29056828 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
* *
29056867 TGTGTCCGGGCTAAAGACCCGCAGGCTTCGTGCTGG
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
29056903 TGCTGGTAAT
Statistics
Matches: 107, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
37 9 0.08
38 31 0.29
39 67 0.63
ACGTcount: A:0.19, C:0.25, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
Found at i:29063803 original size:79 final size:81
Alignment explanation
Indices: 29063692--29063876 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
29063682 GCTCCTCGTT
* *
29063692 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGG-CTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
29063755 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
29063772 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
29063836 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
*
29063852 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTC-GGGCTTAGCCCGGA
29063877 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 52 0.57
80 36 0.40
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:29063809 original size:39 final size:40
Alignment explanation
Indices: 29063692--29063876 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
29063682 GCTCCTCGTT
*
29063692 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
29063732 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
29063772 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
29063811 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
29063852 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
29063877 CATCATTCAA
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 79 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:29068850 original size:71 final size:71
Alignment explanation
Indices: 29068729--29068879 Score: 223
Period size: 71 Copynumber: 2.1 Consensus size: 71
29068719 GGGGAATCAT
* * *
29068729 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTTCATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAAACCCCTTTACATTTCAAAGATACAATGG
29068794 ATATCG
66 ATATCG
* ***
29068800 CACTTAGCAACCCCTCGGGGGAATCCGCACATAG-AAACCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAAACCCCTTT-ACATTTCAAAGATACAATG
29068864 GATATCG
65 GATATCG
29068871 CACTTAGCA
1 CACTTAGCA
29068880 CCACCCAAGA
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
70 9 0.12
71 63 0.88
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAAACCCCTTTACATTTCAAAGATACAATGG
ATATCG
Found at i:29073028 original size:27 final size:28
Alignment explanation
Indices: 29072998--29073148 Score: 107
Period size: 27 Copynumber: 5.5 Consensus size: 28
29072988 ATATTGAGCC
* *
29072998 CGCACACTCAGTGCTATATAATCAA-CT
1 CGCACACTTAGTGCTACATAATCAACCT
* *
29073025 CGCACACTTAGTGCTACGTAGTCAACCT
1 CGCACACTTAGTGCTACATAATCAACCT
** ** *
29073053 CGCACACTTAGTGCCGCATGGTCAA-TT
1 CGCACACTTAGTGCTACATAATCAACCT
* * **
29073080 CGCACACGTAGTGC-ATCATATTC-ATTT
1 CGCACACTTAGTGCTA-CATAATCAACCT
* *
29073107 CGCACACTTAGTGCAACATAGTCGAA--T
1 CGCACACTTAGTGCTACATAATC-AACCT
29073134 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
29073149 GTACAATTTA
Statistics
Matches: 102, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
26 1 0.01
27 76 0.75
28 24 0.24
29 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAACCT
Found at i:29078318 original size:43 final size:43
Alignment explanation
Indices: 29078262--29078434 Score: 181
Period size: 43 Copynumber: 4.0 Consensus size: 43
29078252 AGCTCGTACA
* * * *
29078262 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * * * *
29078304 ATGCCACTGTCCCAGATAAGGTCTTACACGAAATCGA-TTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATC-ACATATCG
* *
29078347 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* *
29078390 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATCTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
29078433 AT
1 AT
29078435 AACCTAATGT
Statistics
Matches: 106, Mismatches: 20, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
42 6 0.06
43 98 0.92
44 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:29082426 original size:46 final size:46
Alignment explanation
Indices: 29082374--29082545 Score: 247
Period size: 46 Copynumber: 3.7 Consensus size: 46
29082364 TTGGGCATCC
* **
29082374 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTTTC-
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-TGCCT
29082420 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGCCT
* **
29082466 GAGCTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGTGAATGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGCCT
* * *
29082512 GAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
29082546 GCGGGTTACA
Statistics
Matches: 117, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
45 2 0.02
46 115 0.98
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGCCT
Found at i:29084122 original size:20 final size:20
Alignment explanation
Indices: 29084094--29084161 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 20
29084084 CTAGGAAATA
29084094 TGTGATCTGAGCTCATGAAT
1 TGTGATCTGAGCTCATGAAT
* *
29084114 TGTGGTCTGAGTTCATGATAT
1 TGTGATCTGAGCTCATGA-AT
* *
29084135 ATGTGACATCTGAACTCATGAGT
1 -TGTG--ATCTGAGCTCATGAAT
29084158 TGTG
1 TGTG
29084162 GTCTAACTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
20 16 0.42
21 2 0.05
22 8 0.21
23 1 0.03
24 11 0.29
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAAT
Found at i:29084153 original size:44 final size:44
Alignment explanation
Indices: 29084091--29084186 Score: 142
Period size: 44 Copynumber: 2.2 Consensus size: 44
29084081 TCACTAGGAA
* * *
29084091 ATATGTG--ATCTGAGCTCATGAATTGTGGTCTGAGTTCATGAT
1 ATATGTGACATCTGAACTCATGAATTGTGGTCTAACTTCATGAT
*
29084133 ATATGTGACATCTGAACTCATGAGTTGTGGTCTAACTTCATGAT
1 ATATGTGACATCTGAACTCATGAATTGTGGTCTAACTTCATGAT
29084177 ATATGTGACA
1 ATATGTGACA
29084187 CATGTTTTGG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 7 0.15
44 41 0.85
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (44 bp):
ATATGTGACATCTGAACTCATGAATTGTGGTCTAACTTCATGAT
Found at i:29088212 original size:52 final size:48
Alignment explanation
Indices: 29088134--29088269 Score: 172
Period size: 44 Copynumber: 2.8 Consensus size: 48
29088124 AATATGTATA
* *
29088134 CATCCATAATGAACTCGGTCCAACTCAACAAGTTCGGATGTCACATGCATCG
1 CATCCATAATGAACTCGGACCAACTCAACAAGCTCGGATG--A-ATGC-TCG
*
29088186 CATCCATAATGAACTCGGACCAACTCAACGAGCTC----GAATGCTCG
1 CATCCATAATGAACTCGGACCAACTCAACAAGCTCGGATGAATGCTCG
*
29088230 CATCCATAATGAACTCAGACCAACTCAACAAGCTCGGATG
1 CATCCATAATGAACTCGGACCAACTCAACAAGCTCGGATG
29088270 CTTCACATAT
Statistics
Matches: 75, Mismatches: 5, Indels: 12
0.82 0.05 0.13
Matches are distributed among these distances:
44 36 0.48
45 4 0.05
46 1 0.01
48 2 0.03
52 32 0.43
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (48 bp):
CATCCATAATGAACTCGGACCAACTCAACAAGCTCGGATGAATGCTCG
Found at i:29088321 original size:45 final size:45
Alignment explanation
Indices: 29088241--29088362 Score: 138
Period size: 45 Copynumber: 2.7 Consensus size: 45
29088231 ATCCATAATG
* * *
29088241 AACTCAGACCAACTCAACAAGCTCGGA-TGCTTCACATATAACACA
1 AACTCGGACCAACTCAACAAGCTCAGATTTC-TCACATATAACACA
* * * * * **
29088286 AACTTGGACTAACTCAACAAGTTCATATTTCTCACATATATCATG
1 AACTCGGACCAACTCAACAAGCTCAGATTTCTCACATATAACACA
29088331 AACTCGGACCAACTCAACAAGCTCAGATTTCT
1 AACTCGGACCAACTCAACAAGCTCAGATTTCT
29088363 AAATTCCTAG
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
45 60 0.97
46 2 0.03
ACGTcount: A:0.37, C:0.28, G:0.11, T:0.25
Consensus pattern (45 bp):
AACTCGGACCAACTCAACAAGCTCAGATTTCTCACATATAACACA
Found at i:29090671 original size:23 final size:24
Alignment explanation
Indices: 29090613--29090673 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 24
29090603 GAGCCATGAT
**
29090613 CGGTAAGCTTCTCCTGAGCTGATGAA
1 CGGTAAGC-TCTAATGAGCTGA-GAA
*
29090639 CAGTAAGCTCTAATGAGCTGA-AA
1 CGGTAAGCTCTAATGAGCTGAGAA
29090662 CGGTAAGCTCTA
1 CGGTAAGCTCTA
29090674 TCGAACTGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
23 13 0.42
25 11 0.35
26 7 0.23
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (24 bp):
CGGTAAGCTCTAATGAGCTGAGAA
Found at i:29098039 original size:20 final size:20
Alignment explanation
Indices: 29098011--29098078 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 20
29098001 CTTAAAAATA
29098011 TGTGATCTGAACTCATGAGT
1 TGTGATCTGAACTCATGAGT
* ** *
29098031 TGTGGTCTGAGTTCATGATAT
1 TGTGATCTGAACTCATGA-GT
*
29098052 ATGTGACATCTGAACTCATAAGT
1 -TGTG--ATCTGAACTCATGAGT
29098075 TGTG
1 TGTG
29098079 GTCTAAGTTC
Statistics
Matches: 35, Mismatches: 9, Indels: 6
0.70 0.18 0.12
Matches are distributed among these distances:
20 15 0.43
21 1 0.03
22 8 0.23
23 1 0.03
24 10 0.29
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAACTCATGAGT
Found at i:29098069 original size:44 final size:44
Alignment explanation
Indices: 29098008--29098103 Score: 160
Period size: 44 Copynumber: 2.2 Consensus size: 44
29097998 TCACTTAAAA
* *
29098008 ATATGTG--ATCTGAACTCATGAGTTGTGGTCTGAGTTCATGAT
1 ATATGTGACATCTGAACTCATAAGTTGTGGTCTAAGTTCATGAT
29098050 ATATGTGACATCTGAACTCATAAGTTGTGGTCTAAGTTCATGAT
1 ATATGTGACATCTGAACTCATAAGTTGTGGTCTAAGTTCATGAT
29098094 ATATGTGACA
1 ATATGTGACA
29098104 CATGTTTTGG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
42 7 0.14
44 43 0.86
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.36
Consensus pattern (44 bp):
ATATGTGACATCTGAACTCATAAGTTGTGGTCTAAGTTCATGAT
Found at i:29100161 original size:29 final size:29
Alignment explanation
Indices: 29100098--29100165 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
29100088 TAATCAACCG
29100098 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
29100127 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
29100156 CGCACACTTA
1 CGCACACTTA
29100166 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:29108267 original size:29 final size:29
Alignment explanation
Indices: 29108204--29108271 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
29108194 TAATCAACCA
29108204 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
29108233 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
29108262 CGCACACTTA
1 CGCACACTTA
29108272 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:29108412 original size:29 final size:30
Alignment explanation
Indices: 29108373--29108451 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
29108363 CTTAATAATC
29108373 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
29108403 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
29108432 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
29108452 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:29115626 original size:15 final size:15
Alignment explanation
Indices: 29115606--29115634 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
29115596 AAGTTGCTTG
29115606 CTACTTGTTAAATTT
1 CTACTTGTTAAATTT
29115621 CTACTTGTTAAATT
1 CTACTTGTTAAATT
29115635 ACTTATTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (15 bp):
CTACTTGTTAAATTT
Found at i:29120633 original size:41 final size:40
Alignment explanation
Indices: 29120588--29120749 Score: 152
Period size: 41 Copynumber: 3.9 Consensus size: 40
29120578 TCCTAGCACC
29120588 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACTACT
1 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGAC-ACT
* * *
29120629 GGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-TTATGACACT
1 GGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGATTA-GACACT
* * *
29120669 GGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG-CACT
1 GGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--ATTAGACACT
*
29120712 GGCTCAAAAGCCCTTCGAGACCAAGCTCGAATTTAGAC
1 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGA-TTAGAC
29120750 CCCGATTAGT
Statistics
Matches: 99, Mismatches: 10, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
39 1 0.01
40 17 0.17
41 48 0.48
42 19 0.19
43 10 0.10
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (40 bp):
GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACACT
Found at i:29123696 original size:25 final size:25
Alignment explanation
Indices: 29123644--29123701 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
29123634 ATAAAACCTA
29123644 AAAATGAAAAAGTATTAAATGAAAAT
1 AAAAT-AAAAAGTATTAAATGAAAAT
*
29123670 AAAATAAAAAGTACTTAAA-GAAGAT
1 AAAATAAAAAGTA-TTAAATGAAAAT
29123695 -AAATAAA
1 AAAATAAA
29123702 CATAAAAGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 7 0.23
25 13 0.43
26 10 0.33
ACGTcount: A:0.67, C:0.02, G:0.10, T:0.21
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAATGAAAAT
Found at i:29132662 original size:47 final size:47
Alignment explanation
Indices: 29132520--29133875 Score: 2343
Period size: 47 Copynumber: 28.8 Consensus size: 47
29132510 ATTTAGGATT
29132520 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
29132569 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
29132618 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29132665 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
* *
29132714 CGATGTGATGAATGTGAAAGTGTATCTATGTGATAAGGCCTAATAGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
*
29132761 CGATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
*
29132808 CGATGTAATGAATGTGAAAGTGTATATA--TGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
*
29132853 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* *
29132900 CGATGTGATGAATGTGAAAGTGTATCTATGTGATAAGGCCTAATAGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
*
29132947 CGATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29132994 CGATGTGATGAATGTGAAAGTGTATATA--TGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29133039 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29133086 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29133133 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
29133182 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
29133230 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29133277 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
*
29133326 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* **
29133373 CGATGTGGTGAATGTGAAAGTGTATATATGTTTTAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* *
29133420 CGATGTAATGAATGTGAAAGTGTATATA--TGATAAGGCCTAGTGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29133465 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29133512 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29133559 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29133606 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29133653 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29133700 CGATGTGATGAATGTGAAAGTGTATATA--TGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29133745 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * * *
29133792 CGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * * *
29133839 CAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
29133876 TCCCGAAGGG
Statistics
Matches: 1254, Mismatches: 38, Indels: 32
0.95 0.03 0.02
Matches are distributed among these distances:
45 175 0.14
46 24 0.02
47 795 0.63
48 22 0.02
49 238 0.19
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
Found at i:29132912 original size:139 final size:140
Alignment explanation
Indices: 29132520--29133875 Score: 2269
Period size: 139 Copynumber: 9.6 Consensus size: 140
29132510 ATTTAGGATT
29132520 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 CGATGTGATGAATGTGAAAGTG--TATATA-GTGATAAGGCCTAATGGCCGATGTGATGAATGTG
29132585 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
63 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
29132650 ATAAGGCCTAATGGC
126 ATAAGGCCTAATGGC
29132665 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 CGATGTGATGAATGTGAAAGTG--TATATA-GTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* * *
29132730 AAAGTGTATCTATGTGATAAGGCCTAATAGCCGATGTGGTGAATGTGAAAGTGTATATATGTGAT
63 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
29132795 AAGGCCTAATGGC
128 AAGGCCTAATGGC
*
29132808 CGATGTAATGAATGTGAAAGTGTATATA-TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 CGATGTGATGAATGTGAAAGTGTATATAGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* *
29132872 GTGTATATATGTGATAAGGCCTAATGCCCGATGTGATGAATGTGAAAGTGTATCTATGTGATAAG
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
*
29132937 GCCTAATAGC
131 GCCTAATGGC
*
29132947 CGATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATA-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
29133012 AGTGTATATA--TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
65 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
29133075 GGCCTAATGGC
130 GGCCTAATGGC
29133086 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATA-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
29133151 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
65 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
29133216 ATAAGGCCTAATGG-
126 ATAAGGCCTAATGGC
29133230 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATA-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
29133295 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
65 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
29133360 AAGGCCTAATAGC
128 AAGGCCTAATGGC
* ** *
29133373 CGATGTGGTGAATGTGAAAGTGTATATATGTTTTAAGGCCTAATGGCCGATGTAATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATA-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
29133438 AGTGTATATA--TGATAAGGCCTAGTGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
65 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
29133501 GGCCTAATGGC
130 GGCCTAATGGC
29133512 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATA-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
29133577 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
65 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
29133642 GGCCTAATGGC
130 GGCCTAATGGC
29133653 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATA-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
29133718 AGTGTATATA--TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
65 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
29133781 GGCCTAATGGC
130 GGCCTAATGGC
* * * * * * *
29133792 CGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATA-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
29133857 AGTGTATAAATGTGATAAG
65 AGTGTATATATGTGATAAG
29133876 TCCCGAAGGG
Statistics
Matches: 1162, Mismatches: 36, Indels: 30
0.95 0.03 0.02
Matches are distributed among these distances:
139 524 0.45
141 208 0.18
142 23 0.02
143 194 0.17
144 118 0.10
145 95 0.08
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (140 bp):
CGATGTGATGAATGTGAAAGTGTATATAGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
GCCTAATGGC
Found at i:29132929 original size:186 final size:187
Alignment explanation
Indices: 29132520--29133875 Score: 2312
Period size: 186 Copynumber: 7.2 Consensus size: 187
29132510 ATTTAGGATT
29132520 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
29132585 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
64 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTG
29132650 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
126 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
* * *
29132714 CGATGTGATGAATGTGAAAGTGTATCTATGTGATAAGGCCTAATAGCCGATGTGGTGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
29132779 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATATA-TGATAAG
66 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAGTGATAAG
*
29132843 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCC
131 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * *
29132900 CGATGTGATGAATGTGAAAGTGTATCTATGTGATAAGGCCTAATAGCCGATGTGGTGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
29132965 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-TGATAAG
66 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAGTGATAAG
29133029 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
131 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29133086 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
29133151 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
66 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA-GTG
29133216 ATAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
126 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29133277 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* * **
29133342 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGGTGAATGTGAAAGTGTATATATGTTTT
64 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGAT
* *
29133407 AAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATATA--TGATAAGGCCTAGTGGC
128 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29133465 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
29133530 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
66 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGATAA
29133595 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
130 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29133653 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
29133718 AGTGTATATA--TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
66 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGATAA
* * * *
29133781 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
130 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * * *
29133839 CAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
29133876 TCCCGAAGGG
Statistics
Matches: 1121, Mismatches: 30, Indels: 30
0.95 0.03 0.03
Matches are distributed among these distances:
186 556 0.50
188 215 0.19
189 22 0.02
190 85 0.08
191 114 0.10
192 60 0.05
193 47 0.04
194 22 0.02
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (187 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAGTGATAAG
GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
Found at i:29133069 original size:25 final size:25
Alignment explanation
Indices: 29133041--29133119 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
29133031 CTAATGGCCG
29133041 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
29133066 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
29133088 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
29133113 ATGTGAT
1 ATGTGAT
29133120 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:29135397 original size:40 final size:40
Alignment explanation
Indices: 29135282--29135670 Score: 642
Period size: 40 Copynumber: 9.8 Consensus size: 40
29135272 GAGAATTGAG
29135282 AGTGATGTATCCGGGCTAAGTC-CGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
29135321 AGT-ATGTATCCGGGCTAAGTC-CGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
29135359 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
29135399 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
29135439 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
29135479 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
29135519 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
29135559 AGTGATGTATCCGGACTAAGT-TCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCT-CGAAGAGCATTCGTGCT
* * ** *
29135599 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* * * * *
29135639 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCA
29135671 ATCATGCTGG
Statistics
Matches: 333, Mismatches: 13, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
38 38 0.11
39 22 0.07
40 273 0.82
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
Found at i:29138720 original size:49 final size:49
Alignment explanation
Indices: 29138667--29139008 Score: 299
Period size: 47 Copynumber: 6.8 Consensus size: 49
29138657 ATTTAGGATT
29138667 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
* * * *
29138716 CGATGTGATGAATGTGAAAATGTGATGAATGTGAAAGTGTATATATATGTG-ATAA-GGC
1 CGATGTGATGAATGTG-AAA-GTG-T--ATAT-ATA-TGT-GATA-A-G-GCCTAATGGC
* ** *
29138774 CTAATG-GCCG-ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 C-GATGTGATGAATGTGA--AA-GT----GTATATATATGTGATAAGGCCTAATGGC
29138829 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
29138878 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
* * * *
29138925 CGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGC
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
* * * *
29138972 CAACGTGATGGATGCGAAAGTGTATA-A-ATGTGATAAG
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
29139009 TCCCGAAGGG
Statistics
Matches: 243, Mismatches: 26, Indels: 50
0.76 0.08 0.16
Matches are distributed among these distances:
47 94 0.39
48 1 0.00
49 67 0.28
50 3 0.01
51 3 0.01
52 1 0.00
53 3 0.01
54 12 0.05
55 9 0.04
56 13 0.05
57 11 0.05
58 14 0.06
59 9 0.04
60 1 0.00
61 1 0.00
62 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
Found at i:29138740 original size:17 final size:17
Alignment explanation
Indices: 29138718--29138751 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
29138708 CTAATGGCCG
29138718 ATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAAA
29138735 ATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAAA
29138752 GTGTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.29
Consensus pattern (17 bp):
ATGTGATGAATGTGAAA
Found at i:29138750 original size:66 final size:66
Alignment explanation
Indices: 29138669--29138800 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
29138659 TTAGGATTCG
29138669 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
29138734 A
66 A
29138735 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
29138800 A
66 A
29138801 GTGTATATAT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (66 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
A
Found at i:29138826 original size:47 final size:47
Alignment explanation
Indices: 29138735--29139008 Score: 431
Period size: 47 Copynumber: 5.7 Consensus size: 47
29138725 GAATGTGAAA
29138735 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
29138784 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
29138831 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
29138880 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
29138927 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
29138974 ACGTGATGGATGCGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
29139009 TCCCGAAGGG
Statistics
Matches: 212, Mismatches: 11, Indels: 6
0.93 0.05 0.03
Matches are distributed among these distances:
47 145 0.68
49 67 0.32
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:29138847 original size:96 final size:96
Alignment explanation
Indices: 29138735--29139008 Score: 453
Period size: 96 Copynumber: 2.9 Consensus size: 96
29138725 GAATGTGAAA
29138735 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
29138800 AGTGTATATATGTGATAAGGCCTAATGGCCG
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
29138831 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
29138896 AGTGTATATATGTGATAAGGCCTAATGGCCG
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * * * *
29138927 ATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGCGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
29138990 AGTGTATAAATGTGATAAG
66 AGTGTATATATGTGATAAG
29139009 TCCCGAAGGG
Statistics
Matches: 169, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
94 53 0.31
96 116 0.69
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:29139183 original size:37 final size:37
Alignment explanation
Indices: 29139127--29139205 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
29139117 CCGAGCTCTA
* * * *
29139127 AAGACCCGATGACTACGTGTGGGGATTTTTTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
29139164 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
29139201 AAGAC
1 AAGAC
29139206 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:29146106 original size:27 final size:27
Alignment explanation
Indices: 29146057--29146140 Score: 71
Period size: 27 Copynumber: 3.0 Consensus size: 27
29146047 GTGAGGCTGC
*
29146057 CAAATATTGTGACGAAGTAACCAGATG
1 CAAATATTGTGACGAAGCAACCAGATG
* * *
29146084 CAAATATTGTGGCTAAGCCACCAGAACTG
1 CAAATATTGTGACGAAGCAACCAG-A-TG
*
29146113 -ATATATATATGTGACGAAGCCACCAGAT
1 CA-A-ATAT-TGTGACGAAGCAACCAGAT
29146141 TGCAGCGAGG
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
27 20 0.43
28 2 0.04
29 4 0.09
30 5 0.11
31 15 0.33
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (27 bp):
CAAATATTGTGACGAAGCAACCAGATG
Found at i:29151773 original size:28 final size:28
Alignment explanation
Indices: 29151741--29151892 Score: 151
Period size: 28 Copynumber: 5.4 Consensus size: 28
29151731 GAACATAGGT
29151741 ACTGTGTGTGCGAGTTCCGTAACTGAGC
1 ACTGTGTGTGCGAGTTCCGTAACTGAGC
* * ***
29151769 ACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTCCGTAACTGA-GC
* *
29151798 ACTGTGTGTGCAAGTTTCGTAACTGAGC
1 ACTGTGTGTGCGAGTTCCGTAACTGAGC
* * ***
29151826 ACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTCCGTAACTGA-GC
** *
29151855 ACTGTGTGTGCGAGTTTTGTAACCGAGC
1 ACTGTGTGTGCGAGTTCCGTAACTGAGC
29151883 ACTGTGTGTG
1 ACTGTGTGTG
29151893 TGAGATCGGT
Statistics
Matches: 96, Mismatches: 26, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
28 54 0.56
29 42 0.44
ACGTcount: A:0.16, C:0.16, G:0.36, T:0.32
Consensus pattern (28 bp):
ACTGTGTGTGCGAGTTCCGTAACTGAGC
Found at i:29151806 original size:57 final size:57
Alignment explanation
Indices: 29151741--29151923 Score: 294
Period size: 57 Copynumber: 3.2 Consensus size: 57
29151731 GAACATAGGT
*
29151741 ACTGTGTGTGCGAGTTCCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
*
29151798 ACTGTGTGTGCAAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
* * * *
29151855 ACTGTGTGTGCGAGTTTTGTAACCGAGCACTGTGTGTGTGAGATCGGTTGTTGGGGC
1 ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
29151912 ACTAAGTGTGTG
1 ACT--GTGTGTG
29151924 AAATGAGATC
Statistics
Matches: 117, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
57 110 0.94
59 7 0.06
ACGTcount: A:0.16, C:0.15, G:0.37, T:0.32
Consensus pattern (57 bp):
ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
Found at i:29155044 original size:39 final size:39
Alignment explanation
Indices: 29154987--29155142 Score: 231
Period size: 39 Copynumber: 4.0 Consensus size: 39
29154977 ATTCAAGACA
* * * *
29154987 CTGGAAATGTATCCGGGCTGAGGTCCCGCAGGCTTTGTC
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *** *
29155026 CTAGAAATGTATCCGGGCTAAAGTCCTATACGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
29155065 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
29155104 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
29155143 TTGGGATATA
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 103 1.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:29160405 original size:57 final size:57
Alignment explanation
Indices: 29160334--29160452 Score: 177
Period size: 57 Copynumber: 2.1 Consensus size: 57
29160324 ACCCCTACAT
* * *
29160334 ACATACATATGGCCCACTAGGCCCAATCTCATATATATGGCCCAT-CAGGCCCAATTC
1 ACATTCATATGGCCCACTAGGCCCAATCTCATATATATGGACCATCCA-GCCCAAATC
* *
29160391 ACATTCATATGGCCCATTAGGCCCAATCTCATTTATATGGACCATCCAGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAATCTCATATATATGGACCATCCAGCCCAAATC
29160448 ACATT
1 ACATT
29160453 TCATTCATGC
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 54 0.96
58 2 0.04
ACGTcount: A:0.30, C:0.32, G:0.13, T:0.25
Consensus pattern (57 bp):
ACATTCATATGGCCCACTAGGCCCAATCTCATATATATGGACCATCCAGCCCAAATC
Found at i:29160435 original size:28 final size:28
Alignment explanation
Indices: 29160340--29160435 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
29160330 ACATACATAC
* *
29160340 ATATGGCCCACTAGGCCCAATCTCATAT
1 ATATGGCCCATTAGGCCCAATCTCATTT
* * *
29160368 ATATGGCCCATCAGGCCCAATTCACATTC
1 ATATGGCCCATTAGGCCCAA-TCTCATTT
29160397 ATATGGCCCATTAGGCCCAATCTCATTT
1 ATATGGCCCATTAGGCCCAATCTCATTT
*
29160425 ATATGGACCAT
1 ATATGGCCCAT
29160436 CCAGCCCAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 34 0.59
29 24 0.41
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAATCTCATTT
Found at i:29160442 original size:28 final size:28
Alignment explanation
Indices: 29160340--29160453 Score: 124
Period size: 28 Copynumber: 4.0 Consensus size: 28
29160330 ACATACATAC
* *
29160340 ATATGGCCCA-CTAGGCCCAATCTCATAT
1 ATATGGCCCATC-AGGCCCAATCACATTT
*
29160368 ATATGGCCCATCAGGCCCAATTCACATTC
1 ATATGGCCCATCAGGCCCAA-TCACATTT
* *
29160397 ATATGGCCCATTAGGCCCAATCTCATTT
1 ATATGGCCCATCAGGCCCAATCACATTT
*
29160425 ATATGGACCATCCA-GCCCAAATCACATTT
1 ATATGGCCCAT-CAGGCCC-AATCACATTT
29160454 CATTCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
28 38 0.52
29 35 0.48
ACGTcount: A:0.29, C:0.32, G:0.13, T:0.26
Consensus pattern (28 bp):
ATATGGCCCATCAGGCCCAATCACATTT
Found at i:29163303 original size:47 final size:47
Alignment explanation
Indices: 29163224--29163777 Score: 892
Period size: 47 Copynumber: 11.6 Consensus size: 47
29163214 TATTTGAATA
29163224 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
29163273 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
29163320 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
29163369 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
29163416 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGGTGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
29163463 AATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
29163512 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGGTGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
29163559 AATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
29163608 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
29163657 AATGTGAAAGTGTAAATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
29163704 AATGTGAAAGCGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
29163751 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
29163778 TCCCGAAGGG
Statistics
Matches: 477, Mismatches: 22, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
47 280 0.59
49 197 0.41
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:29163336 original size:96 final size:94
Alignment explanation
Indices: 29163224--29163777 Score: 892
Period size: 96 Copynumber: 5.8 Consensus size: 94
29163214 TATTTGAATA
29163224 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
29163289 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
29163320 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
29163385 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
29163416 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
29163481 TATATGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
29163512 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
29163577 TATATGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
29163608 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
29163673 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * * * *
29163704 AATGTGAAAGCGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
29163769 TGTGATAAG
66 TGTGATAAG
29163778 TCCCGAAGGG
Statistics
Matches: 439, Mismatches: 15, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
94 99 0.23
96 294 0.67
98 46 0.10
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:29163399 original size:143 final size:143
Alignment explanation
Indices: 29163224--29163777 Score: 941
Period size: 143 Copynumber: 3.9 Consensus size: 143
29163214 TATTTGAATA
29163224 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
29163289 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
29163354 ATGGCCGATGTGATG
129 ATGGCCGATGTGATG
29163369 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
29163434 TGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATATATATATGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
29163499 GGCCGATGTGATG
131 GGCCGATGTGATG
*
29163512 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
29163577 TATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
29163642 ATGGCCGATGTGATG
129 ATGGCCGATGTGATG
* *
29163657 AATGTGAAAGTGTAAATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * *
29163722 TGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
29163778 TCCCGAAGGG
Statistics
Matches: 390, Mismatches: 17, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
141 10 0.03
142 1 0.00
143 230 0.59
145 149 0.38
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCGATGTGATG
Found at i:29174875 original size:27 final size:27
Alignment explanation
Indices: 29174744--29174876 Score: 178
Period size: 27 Copynumber: 4.9 Consensus size: 27
29174734 GGGCAAAATA
* * *
29174744 GTAATTTTACACC-ACAAGGGTATCTCG
1 GTAATTCTAC-CCTACAGGGGTATTTCG
*
29174771 GTAATTCTACCCTACATGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* * *
29174798 GTACTTCTACCCTACAGGGGTTTTTTG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
29174825 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
29174852 GTAATTCTACCCTACAGGGGTATTT
1 GTAATTCTACCCTACAGGGGTATTT
29174877 TAATAATTTT
Statistics
Matches: 94, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 2 0.02
27 92 0.98
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:29176335 original size:31 final size:31
Alignment explanation
Indices: 29176292--29176419 Score: 213
Period size: 31 Copynumber: 4.2 Consensus size: 31
29176282 TTATTCTTGA
* *
29176292 CATAT-ACTGGGCTGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
29176322 CATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
29176353 CATATCATTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
29176384 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
29176415 CATAT
1 CATAT
29176420 AAACGGTATG
Statistics
Matches: 93, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.05
31 88 0.95
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:29176497 original size:42 final size:42
Alignment explanation
Indices: 29176438--29176529 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
29176428 TGGCCCTTAG
*
29176438 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACAGGTAATGTCAATGAATGTATGCAA
29176480 GCCCATTTCAATATCACAGGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACAGGTAATGTCAATGAATGTATGCAA
29176522 GCCCATTT
1 GCCCATTT
29176530 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACAGGTAATGTCAATGAATGTATGCAA
Found at i:29176710 original size:25 final size:25
Alignment explanation
Indices: 29176677--29176746 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
29176667 CTCGTTTAAT
*
29176677 AACTAGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
29176702 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
29176727 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
29176747 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:29177582 original size:27 final size:27
Alignment explanation
Indices: 29177552--29177616 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
29177542 GGGCATATTC
29177552 GTCATTTTACCATACAAGGG-TATTACA
1 GTCATTTTACCATACAAGGGCT-TTACA
* * * *
29177579 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACA
*
29177606 GTCTTTTTACC
1 GTCATTTTACC
29177617 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACA
Found at i:29177773 original size:27 final size:27
Alignment explanation
Indices: 29177650--29177883 Score: 170
Period size: 27 Copynumber: 8.6 Consensus size: 27
29177640 CATCCTACAA
* * * *
29177650 GGGTGTTTTGGTAATTCTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAG
* ** ** *
29177677 GTGTATTTCAGTAATTTTGTAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAG
* * * *
29177704 TGGTATTTCT-ATAATTTTTAGAAAGTCAA
1 GGGTATTT-TGGTAA-TTTTACAAA-TCAG
**
29177733 GGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAATCAG
*
29177760 GGGTATTTTGGTAATTTTACAAAT-TG
1 GGGTATTTTGGTAATTTTACAAATCAG
* * * *
29177786 AGGGTATTTCGATAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAATCAG
* *
29177814 TGGTATTTCGGTAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTACAAATC-AG
*
29177841 GGGTATTTTGGTAATTTTACAAATTAG
1 GGGTATTTTGGTAATTTTACAAATCAG
29177868 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
29177884 CTATCCTACA
Statistics
Matches: 164, Mismatches: 35, Indels: 16
0.76 0.16 0.07
Matches are distributed among these distances:
26 3 0.02
27 132 0.80
28 15 0.09
29 14 0.09
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAG
Found at i:29177900 original size:81 final size:81
Alignment explanation
Indices: 29177734--29177916 Score: 212
Period size: 81 Copynumber: 2.3 Consensus size: 81
29177724 GAAAGTCAAG
* **
29177734 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGAT
1 GGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGAT
*
29177799 AATTTCACAAACCAGT
66 AATTTCACAAACCAGA
* *
29177815 GGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAATT-AGGGGTATTTTG
1 GGTATTTCAGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCG
* **
29177878 GTAA-TTCTATCCTA-CAGA
64 ATAATTTC-A-CAAACCAGA
*
29177896 GGTATTTCAGTAATTTCACAA
1 GGTATTTCAGTAATTTTACAA
29177917 TCGAGGGTAA
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
80 5 0.06
81 81 0.92
82 2 0.02
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (81 bp):
GGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGAT
AATTTCACAAACCAGA
Found at i:29177952 original size:27 final size:27
Alignment explanation
Indices: 29177915--29178111 Score: 254
Period size: 27 Copynumber: 7.3 Consensus size: 27
29177905 GTAATTTCAC
* *
29177915 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
29177942 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
*
29177969 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
29177996 AATCGAGGGTAAAATGGCAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
29178023 AATTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
29178050 AATC-AGGGTGAAATGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
29178076 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
29178103 AATCGAGGG
1 AATCGAGGG
29178112 GATTTCAGTA
Statistics
Matches: 148, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 22 0.15
27 125 0.84
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:29178098 original size:80 final size:81
Alignment explanation
Indices: 29177915--29178111 Score: 288
Period size: 80 Copynumber: 2.4 Consensus size: 81
29177905 GTAATTTCAC
* * * * *
29177915 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
* *
29177980 AAACGGTAATTCTGTA
66 AAACGATAATTCTATA
* *
29177996 AATCGAGGGTAAAATGGCAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATC-AGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
*
29178060 AAATGATAATTCTATA
66 AAACGATAATTCTATA
*
29178076 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGG
29178112 GATTTCAGTA
Statistics
Matches: 104, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 52 0.50
81 52 0.50
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
AAACGATAATTCTATA
Found at i:29183951 original size:16 final size:16
Alignment explanation
Indices: 29183930--29183961 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
29183920 AGTGTAACGC
29183930 CCTAAAAATCCCAAAA
1 CCTAAAAATCCCAAAA
29183946 CCTAAAAATCCCAAAA
1 CCTAAAAATCCCAAAA
29183962 TCTTGATTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.31, G:0.00, T:0.12
Consensus pattern (16 bp):
CCTAAAAATCCCAAAA
Found at i:29185355 original size:18 final size:19
Alignment explanation
Indices: 29185320--29185356 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
29185310 TGAATAGGCC
*
29185320 AAATGGGCCGGAATGGGCT
1 AAATGGGCCCGAATGGGCT
29185339 AAATGGGCCCG-ATGGGCT
1 AAATGGGCCCGAATGGGCT
29185357 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.24, C:0.19, G:0.41, T:0.16
Consensus pattern (19 bp):
AAATGGGCCCGAATGGGCT
Found at i:29185477 original size:28 final size:27
Alignment explanation
Indices: 29185437--29185541 Score: 129
Period size: 28 Copynumber: 3.7 Consensus size: 27
29185427 GTAATGTGAT
*
29185437 TTGGGCCGGATGGGCCATATAAATGAGA
1 TTGGGCC-AATGGGCCATATAAATGAGA
* *
29185465 TTGGGCCCAATGGGCCATATGAATGTAAA
1 TTGGG-CCAATGGGCCATATAAATG-AGA
*
29185494 TTGGGCTAGATGGGCCATATAAATGAGA
1 TTGGGCCA-ATGGGCCATATAAATGAGA
29185522 TTGGGCCAAGTGGGCCATAT
1 TTGGGCCAA-TGGGCCATAT
29185542 GCATGTATGT
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
27 1 0.02
28 41 0.62
29 24 0.36
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (27 bp):
TTGGGCCAATGGGCCATATAAATGAGA
Found at i:29190302 original size:16 final size:16
Alignment explanation
Indices: 29190260--29190302 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
29190250 GTAGATCGGC
*
29190260 AAAAGTCAAAATGCCG
1 AAAAGTCGAAATGCCG
29190276 AAAAGTCGAAATGCCG
1 AAAAGTCGAAATGCCG
*
29190292 AAAAGTTGAAA
1 AAAAGTCGAAA
29190303 GTTTGGCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.51, C:0.14, G:0.21, T:0.14
Consensus pattern (16 bp):
AAAAGTCGAAATGCCG
Found at i:29190566 original size:28 final size:28
Alignment explanation
Indices: 29190526--29190629 Score: 115
Period size: 28 Copynumber: 3.7 Consensus size: 28
29190516 GTAATGTGAT
**
29190526 TTGGGCCGGATGGGCCATATAAATGGGA
1 TTGGGCCTAATGGGCCATATAAATGGGA
*
29190554 TTGGGCCTAATGGGCCATAT-AATGTGAA
1 TTGGGCCTAATGGGCCATATAAATG-GGA
* *
29190582 TTGGG-CTAGATGGGCTATATAAATGAGA
1 TTGGGCCTA-ATGGGCCATATAAATGGGA
29190610 TTGGGCC-AAGTGGGCCATAT
1 TTGGGCCTAA-TGGGCCATAT
29190630 GCATGTATAT
Statistics
Matches: 64, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
27 8 0.12
28 51 0.80
29 5 0.08
ACGTcount: A:0.27, C:0.13, G:0.34, T:0.26
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATAAATGGGA
Found at i:29190579 original size:56 final size:56
Alignment explanation
Indices: 29190517--29190629 Score: 165
Period size: 56 Copynumber: 2.0 Consensus size: 56
29190507 AGAATGAATG
* * *
29190517 TAATGTGATTTGGGCCGGATGGGCCATATAAATGGGATTGGGCCTAA-TGGGCCATA
1 TAATGTGAATTGGGCCAGATGGGCCATATAAATGAGATTGGGCC-AAGTGGGCCATA
* *
29190573 TAATGTGAATTGGGCTAGATGGGCTATATAAATGAGATTGGGCCAAGTGGGCCATA
1 TAATGTGAATTGGGCCAGATGGGCCATATAAATGAGATTGGGCCAAGTGGGCCATA
29190629 T
1 T
29190630 GCATGTATAT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 2 0.04
56 49 0.96
ACGTcount: A:0.27, C:0.12, G:0.33, T:0.27
Consensus pattern (56 bp):
TAATGTGAATTGGGCCAGATGGGCCATATAAATGAGATTGGGCCAAGTGGGCCATA
Found at i:29191717 original size:17 final size:18
Alignment explanation
Indices: 29191684--29191717 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
29191674 TTTTAATAAG
29191684 GGTTTTCAATGAAAACAT
1 GGTTTTCAATGAAAACAT
29191702 GGTTTTCAAT-AAAACA
1 GGTTTTCAATGAAAACA
29191718 CTTCAATGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAT
Found at i:29195951 original size:42 final size:42
Alignment explanation
Indices: 29195831--29195951 Score: 113
Period size: 44 Copynumber: 2.8 Consensus size: 42
29195821 CATGACATAG
**
29195831 GATTTCGTGTAAGACCAAATCTGGGAC-GTTGGCATCGACTTCT
1 GATTTCGTGTAAGACCATGTCTGGGACAG-TGGCATCGAC-TCT
* * *
29195874 GTTTTACGTGAAAGACCATGTCTTGGACA-TCGGCATCGTA-TCT
1 GATTT-CGTGTAAGACCATGTCTGGGACAGT-GGCATCG-ACTCT
* *
29195917 GATTTCGTGTAAGACCCTGTATGGGACAGTGGCAT
1 GATTTCGTGTAAGACCATGTCTGGGACAGTGGCAT
29195952 TGATGTTTGA
Statistics
Matches: 63, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
42 24 0.38
43 13 0.21
44 25 0.40
45 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATGTCTGGGACAGTGGCATCGACTCT
Found at i:29202455 original size:43 final size:43
Alignment explanation
Indices: 29202338--29202498 Score: 120
Period size: 43 Copynumber: 3.8 Consensus size: 43
29202328 ACATAAGCTT
* * *
29202338 ATACAATGCC-ATATCCCAGATATGGTCTTACA-TG-TTATCA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACTGAATATCA
* * * *
29202378 CATATC-GTAGCCACTGTCCCAGACAAGGTTTTACAC-GAA-ATCGA
1 -ATA-CAAT-GCCAATGTCCCAGACATGGTCTTACACTGAATATC-A
* * *
29202422 TTA-ATGATGCCAATGTCCCAGAGATGGTCTTACACTTAATATCA
1 ATACA--ATGCCAATGTCCCAGACATGGTCTTACACTGAATATCA
*
29202466 ATACAATGCTAATGTCCCAGACATGGTCTTACA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACA
29202499 TGTAATCACA
Statistics
Matches: 91, Mismatches: 17, Indels: 22
0.70 0.13 0.17
Matches are distributed among these distances:
41 4 0.04
42 4 0.04
43 72 0.79
44 7 0.08
45 4 0.04
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACACTGAATATCA
Found at i:29205710 original size:39 final size:40
Alignment explanation
Indices: 29205652--29205730 Score: 115
Period size: 39 Copynumber: 2.0 Consensus size: 40
29205642 TTTCTACTTT
* * *
29205652 TTCTTTTTCTTAATTCTCAT-TTTTGGTTTTGCTGTGTGA
1 TTCTTTTTCTTAATACTCATCTTTTAGTTTTGCGGTGTGA
*
29205691 TTCTTTTTCTTGATACTCATCTTTTAGTTTTGCGGTGTGA
1 TTCTTTTTCTTAATACTCATCTTTTAGTTTTGCGGTGTGA
29205731 CCTGTGAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
39 18 0.51
40 17 0.49
ACGTcount: A:0.11, C:0.14, G:0.16, T:0.58
Consensus pattern (40 bp):
TTCTTTTTCTTAATACTCATCTTTTAGTTTTGCGGTGTGA
Found at i:29207266 original size:34 final size:34
Alignment explanation
Indices: 29207172--29207268 Score: 101
Period size: 34 Copynumber: 2.9 Consensus size: 34
29207162 ATACATTTTG
*
29207172 GATACTGT-ACTGAAATGGGCTAAGGCCCACACT
1 GATACTGTCACTGATATGGGCTAAGGCCCACACT
* *
29207205 GATACTGTCACTG-TATTAGGCTAAGGCCCACAGT
1 GATACTGTCACTGATA-TGGGCTAAGGCCCACACT
* * *
29207239 -ATTATTGTGACTGATATGGGCTGAGGCCCA
1 GA-TACTGTCACTGATATGGGCTAAGGCCCA
29207269 GACCGTTCAA
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
33 10 0.19
34 41 0.77
35 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (34 bp):
GATACTGTCACTGATATGGGCTAAGGCCCACACT
Found at i:29211379 original size:43 final size:43
Alignment explanation
Indices: 29211331--29211486 Score: 178
Period size: 43 Copynumber: 3.7 Consensus size: 43
29211321 AGCTAGTACA
29211331 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
*
29211374 ATGCC-ACTGTCCCAGACAG-GGTCTTACATGAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
** * * * *
29211416 ATGCTGATGTCCCAGACATAGTCTTACACGTAATTTCAAAT-T-G
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAA--TCAAATATCG
29211459 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
29211487 CGAAAATCAC
Statistics
Matches: 94, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
42 28 0.30
43 59 0.63
44 7 0.07
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
Found at i:29217667 original size:49 final size:49
Alignment explanation
Indices: 29217606--29217783 Score: 223
Period size: 49 Copynumber: 3.6 Consensus size: 49
29217596 CTGGTACGCA
* *
29217606 TAGTAGCTTGCACTTAGTACTACACATGTAACCAATTATTCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTAACCAATTATTCGGTACACG
* * * * * *
29217655 TAGTAGCCTGCACTTAGTACAACACACGTGATCGAAGTTA-TCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGT-AACCAA-TTATTC-GGTACACG
** *
29217706 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTAACCAATTATTCGGTACACG
29217755 TAGTAGCCTGCACTTAGTACTACACATGT
1 TAGTAGCCTGCACTTAGTACTACACATGT
29217784 GACCTCAGAA
Statistics
Matches: 107, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
49 62 0.58
50 11 0.10
51 34 0.32
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTAACCAATTATTCGGTACACG
Found at i:29217733 original size:100 final size:100
Alignment explanation
Indices: 29217589--29217785 Score: 322
Period size: 100 Copynumber: 2.0 Consensus size: 100
29217579 CTTGTAGCCA
* * *
29217589 AAGTTATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGTAACCAATTATTCAGTACAC
1 AAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATTCAGTACAC
29217654 GTAGTAGCCTGCACTTAGTACAACACACGTGATCG
66 GTAGTAGCCTGCACTTAGTACAACACACGTGATCG
* * *
29217689 AAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACAT
1 AAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATTCAGTACAC
* *
29217754 GTAGTAGCCTGCACTTAGTACTACACATGTGA
66 GTAGTAGCCTGCACTTAGTACAACACACGTGA
29217786 CCTCAGAATA
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 89 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (100 bp):
AAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATTCAGTACAC
GTAGTAGCCTGCACTTAGTACAACACACGTGATCG
Found at i:29227816 original size:49 final size:50
Alignment explanation
Indices: 29227760--29227997 Score: 284
Period size: 49 Copynumber: 4.8 Consensus size: 50
29227750 TAGCCAAAAC
* * *
29227760 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGATCT-AT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAAT
* * *
29227809 TATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAAT
* * * * * *
29227859 CATCCGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCT-AA-T
* * * *
29227910 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACC-AAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAAT
*
29227959 TATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
29227998 CGTGACCTCA
Statistics
Matches: 159, Mismatches: 26, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
49 79 0.50
50 44 0.28
51 36 0.23
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (50 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAAT
Found at i:29227946 original size:101 final size:98
Alignment explanation
Indices: 29227773--29228002 Score: 302
Period size: 100 Copynumber: 2.3 Consensus size: 98
29227763 CTGGTACGCA
* * * **
29227773 TAGTAGCCTGCACTTAGTACTACACATGCGATCTATTATCTGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCTATTATCGGGTACACATAGTAGCCTGCACTTA
**
29227838 GTACTACACATGTGACCTAACCATCCGA-TACACG
66 GTACTACACATGCAACC-AACCAT-CGAGTACACG
*
29227872 TAGTAGCCTGCACTTAGTACTACACACGTGAT-TGAAGTTATCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCT--A-TTATCGGGTACACATAGTAGCCTGCAC
** *
29227936 TTAGTACTACACATGCAACCAATTATCTAGTACACG
63 TTAGTACTACACATGCAACCAACCATCGAGTACACG
29227972 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
29228003 CCTCACAATA
Statistics
Matches: 116, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
98 1 0.01
99 32 0.28
100 42 0.36
101 41 0.35
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCTATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACATGCAACCAACCATCGAGTACACG
Found at i:29235911 original size:47 final size:48
Alignment explanation
Indices: 29235829--29235920 Score: 159
Period size: 47 Copynumber: 1.9 Consensus size: 48
29235819 TGAGAAAATT
29235829 CACAATGTGTTTCTTATATATATGATGTGATAATACAGATAAGATGAGC
1 CACAATGTGTTTC-TATATATATGATGTGATAATACAGATAAGATGAGC
*
29235878 CACAATGTGTTTC-CTATATATGATGTGATAATACAGATAAGAT
1 CACAATGTGTTTCTATATATATGATGTGATAATACAGATAAGAT
29235921 CCTTTATCTA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
47 29 0.69
49 13 0.31
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (48 bp):
CACAATGTGTTTCTATATATATGATGTGATAATACAGATAAGATGAGC
Found at i:29238877 original size:162 final size:162
Alignment explanation
Indices: 29238684--29239005 Score: 590
Period size: 162 Copynumber: 2.0 Consensus size: 162
29238674 CACACAAGCC
29238684 ATAACACGGGCGTGACATGGCCGAGTGGGGGGGCACGCTCCAGGGAGACGGGCGTGTGCTCGGCC
1 ATAACACGGGCGTGACATGGCCGAGTGGGGGGGCACGCTCCAGGGAGACGGGCGTGTGCTCGGCC
* *
29238749 ATGTGAATACCTCTGTAGGTTCAAAATGAAAAATAAAGTCCAATAATTCAACACGGGTAAAGGAC
66 ATGTGAATACCCCTGTAGGTTCAAAATGAAAAATAAAGTCCAATAATTCAACACGAGTAAAGGAC
* *
29238814 ACGGGAATGTCCAAAGCACATGGGCGTGTGCA
131 ACGAGAATGTCCAAAGCACACGGGCGTGTGCA
*
29238846 ATAACACGGGCGTGACATGGCCGAGTGGGGGGGCACGCTCCAGGGAGACGGGCGTGTGCTTGGCC
1 ATAACACGGGCGTGACATGGCCGAGTGGGGGGGCACGCTCCAGGGAGACGGGCGTGTGCTCGGCC
29238911 ATGTGAATACCCCTGTAGGTTCAAAATGAAAAATAAAGTCCAATAATTCAACACGAGTAAAGGAC
66 ATGTGAATACCCCTGTAGGTTCAAAATGAAAAATAAAGTCCAATAATTCAACACGAGTAAAGGAC
*
29238976 ACGAGCATGTCCAAAGCACACGGGCGTGTG
131 ACGAGAATGTCCAAAGCACACGGGCGTGTG
29239006 AGGCTTAAAC
Statistics
Matches: 154, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
162 154 1.00
ACGTcount: A:0.30, C:0.21, G:0.32, T:0.17
Consensus pattern (162 bp):
ATAACACGGGCGTGACATGGCCGAGTGGGGGGGCACGCTCCAGGGAGACGGGCGTGTGCTCGGCC
ATGTGAATACCCCTGTAGGTTCAAAATGAAAAATAAAGTCCAATAATTCAACACGAGTAAAGGAC
ACGAGAATGTCCAAAGCACACGGGCGTGTGCA
Found at i:29240794 original size:17 final size:17
Alignment explanation
Indices: 29240768--29240801 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
29240758 CATGAATATG
29240768 TCTGTAGAACCTATGGA
1 TCTGTAGAACCTATGGA
*
29240785 TCTGTTGAACCTATGGA
1 TCTGTAGAACCTATGGA
29240802 GTTTGTGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (17 bp):
TCTGTAGAACCTATGGA
Found at i:29243224 original size:30 final size:30
Alignment explanation
Indices: 29243179--29243238 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
29243169 ATTTAATACG
* *
29243179 AACTTTGGCAAAATTACATTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
29243209 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
29243239 GGTTTGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:29250329 original size:27 final size:27
Alignment explanation
Indices: 29250162--29250339 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
29250152 TAAATTGTAC
*
29250162 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
29250189 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
29250215 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
29250243 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
29250271 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
29250298 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
29250325 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
29250340 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:29250330 original size:82 final size:81
Alignment explanation
Indices: 29250159--29250339 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
29250149 GATTAAATTG
* * * *
29250159 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
29250224 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
29250240 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
29250304 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
29250322 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
29250340 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:29258339 original size:27 final size:27
Alignment explanation
Indices: 29258172--29258349 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
29258162 TAAATTGTAC
*
29258172 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
29258199 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
29258225 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
29258253 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
29258281 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
29258308 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
29258335 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
29258350 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:29258340 original size:82 final size:81
Alignment explanation
Indices: 29258169--29258349 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
29258159 GATTAAATTG
* * * *
29258169 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
29258234 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
29258250 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
29258314 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
29258332 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
29258350 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:29260795 original size:518 final size:518
Alignment explanation
Indices: 29259818--29260855 Score: 1997
Period size: 518 Copynumber: 2.0 Consensus size: 518
29259808 CGTATGTTTA
29259818 CTTTCTGTTATACGAACTTGCTAAACATGTTAATGCTTACCCCCTTTCTTTTCCCTGTCTTTCAG
1 CTTTCTGTTATACGAACTTGCTAAACATGTTAATGCTTACCCCCTTTCTTTTCCCTGTCTTTCAG
*
29259883 ACCTCGAGGACTCGTGAAGATCCGAAGATGGTTGGAGCAGTGTCTACACTATCAACTTGTTTCGC
66 ACCTCGAGGACTCGTGAAGATCCGAAGACGGTTGGAGCAGTGTCTACACTATCAACTTGTTTCGC
29259948 TTGGTATAAGGAAACTTTCATTTTGTTAAAATGGCATGTATAGGGTTATAGTAATTTTTTTATAT
131 TTGGTATAAGGAAACTTTCATTTTGTTAAAATGGCATGTATAGGGTTATAGTAATTTTTTTATAT
29260013 GTGTCATTTGGCTAGCCAATGAAATGGCTTATAATGATATACTTATTCTTTTGTATATGGCCATA
196 GTGTCATTTGGCTAGCCAATGAAATGGCTTATAATGATATACTTATTCTTTTGTATATGGCCATA
*
29260078 GGATGTGGCTCATATTGATGTGGGTTGTAACCCTACTTATTTTGCATGCTTAAGTTTAAGTGTGT
261 GGATGTGGCTCATATTGATGTGGGTTGTAACCCTACTTATTTTGCATGCTGAAGTTTAAGTGTGT
29260143 CATGTGATATGTTGATGCGGTATCATGGATGGATATATGAAATGAGGCCTAATAACTTGAGAGTG
326 CATGTGATATGTTGATGCGGTATCATGGATGGATATATGAAATGAGGCCTAATAACTTGAGAGTG
*
29260208 GATATGGCATCAAATGGTACATGGTTATAATATTGTTTAATGAGAAATGTGATACGATAATCCTT
391 GATATGGCATCAAATGGTACATGGTTATAATATTGTTTAATGAGAAATGTGATACGACAATCCTT
29260273 AATAAAAAGGATAACCTAGCATGTGCTAACCAATGAGATGAGGTTAACATGCAATAGGCTTTG
456 AATAAAAAGGATAACCTAGCATGTGCTAACCAATGAGATGAGGTTAACATGCAATAGGCTTTG
*
29260336 CTTTCTGTTATACGAACTTGCTAAACATGTTAATGCTTACCCCCTTTCTTTTCCCTGTCTTTTAG
1 CTTTCTGTTATACGAACTTGCTAAACATGTTAATGCTTACCCCCTTTCTTTTCCCTGTCTTTCAG
* *
29260401 ACCTCGAGGACTCGTGAAGATCGGAAGACGGTTGGAGCATTGTCTACACTATCAACTTGTTTCGC
66 ACCTCGAGGACTCGTGAAGATCCGAAGACGGTTGGAGCAGTGTCTACACTATCAACTTGTTTCGC
29260466 TTGGTATAAGGAAACTTTCATTTTGTTAAAATGGCATGTATAGGGTTATAGTAATTTTTTTATAT
131 TTGGTATAAGGAAACTTTCATTTTGTTAAAATGGCATGTATAGGGTTATAGTAATTTTTTTATAT
29260531 GTGTCATTTGGCTAGCCAATGAAATGGCTTATAATGATATACTTATTCTTTTGTATATGGCCAT-
196 GTGTCATTTGGCTAGCCAATGAAATGGCTTATAATGATATACTTATTCTTTTGTATATGGCCATA
29260595 GAGATGTGGCTCATATTGATGTGGGTTGTAACCCTACTTATTTTGCATGCTGAAGTTTAAGTGTG
261 G-GATGTGGCTCATATTGATGTGGGTTGTAACCCTACTTATTTTGCATGCTGAAGTTTAAGTGTG
*
29260660 TCATGTGATATGTTGATGTGGTATCATGGATGGATATATGAAATGAGGCCTAATAACTTGAGAGT
325 TCATGTGATATGTTGATGCGGTATCATGGATGGATATATGAAATGAGGCCTAATAACTTGAGAGT
29260725 GGATATGGCATCAAATGGTACATGGTTATAATATTGTTTAATGAGAAATGTGATACGACAATCCT
390 GGATATGGCATCAAATGGTACATGGTTATAATATTGTTTAATGAGAAATGTGATACGACAATCCT
29260790 TAATAAAAAGGATAACCTAGCATGTGCTAACCAATGAGATGAGGTTAACATGCAATAGGCTTTG
455 TAATAAAAAGGATAACCTAGCATGTGCTAACCAATGAGATGAGGTTAACATGCAATAGGCTTTG
29260854 CT
1 CT
29260856 AGGATGGTTT
Statistics
Matches: 512, Mismatches: 7, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
517 1 0.00
518 511 1.00
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.36
Consensus pattern (518 bp):
CTTTCTGTTATACGAACTTGCTAAACATGTTAATGCTTACCCCCTTTCTTTTCCCTGTCTTTCAG
ACCTCGAGGACTCGTGAAGATCCGAAGACGGTTGGAGCAGTGTCTACACTATCAACTTGTTTCGC
TTGGTATAAGGAAACTTTCATTTTGTTAAAATGGCATGTATAGGGTTATAGTAATTTTTTTATAT
GTGTCATTTGGCTAGCCAATGAAATGGCTTATAATGATATACTTATTCTTTTGTATATGGCCATA
GGATGTGGCTCATATTGATGTGGGTTGTAACCCTACTTATTTTGCATGCTGAAGTTTAAGTGTGT
CATGTGATATGTTGATGCGGTATCATGGATGGATATATGAAATGAGGCCTAATAACTTGAGAGTG
GATATGGCATCAAATGGTACATGGTTATAATATTGTTTAATGAGAAATGTGATACGACAATCCTT
AATAAAAAGGATAACCTAGCATGTGCTAACCAATGAGATGAGGTTAACATGCAATAGGCTTTG
Found at i:29263184 original size:77 final size:77
Alignment explanation
Indices: 29263056--29263229 Score: 278
Period size: 77 Copynumber: 2.3 Consensus size: 77
29263046 GATACATTGA
* * *
29263056 TTTGGCTTCGGGCCATGATATTAGCACTTTGGGTGAGTATTATACCGATTTGGCTTCGGGCCATG
1 TTTGGCTTCGGGCCATGATATTAGCACTTTGGGTGAGTATTATACCAATTTGGCATCGAGCCATG
*
29263121 TATATCGGATGG
66 CATATCGGATGG
*
29263133 TTTGGCTTCGGGCCATGATATTAGCACTTTGGGTGCA-TATTATACCAATTTGGCATCGAGTCAT
1 TTTGGCTTCGGGCCATGATATTAGCACTTTGGGTG-AGTATTATACCAATTTGGCATCGAGCCAT
29263197 GCATATCGGATGG
65 GCATATCGGATGG
*
29263210 TTTGGCTTTGGGCCATGATA
1 TTTGGCTTCGGGCCATGATA
29263230 ATAGTCCTTC
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
77 89 0.99
78 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.35
Consensus pattern (77 bp):
TTTGGCTTCGGGCCATGATATTAGCACTTTGGGTGAGTATTATACCAATTTGGCATCGAGCCATG
CATATCGGATGG
Found at i:29264172 original size:17 final size:17
Alignment explanation
Indices: 29264134--29264174 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
29264124 CAACAATTGG
*
29264134 ATAACATGGATACATAT
1 ATAATATGGATACATAT
29264151 ATAATATGGAT-CAATAT
1 ATAATATGGATAC-ATAT
29264168 ATAATAT
1 ATAATAT
29264175 TCTACCTAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 1 0.05
17 21 0.95
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.34
Consensus pattern (17 bp):
ATAATATGGATACATAT
Found at i:29265137 original size:14 final size:14
Alignment explanation
Indices: 29265118--29265161 Score: 88
Period size: 14 Copynumber: 3.1 Consensus size: 14
29265108 CTCAATGAAA
29265118 TAATCAAACCAATT
1 TAATCAAACCAATT
29265132 TAATCAAACCAATT
1 TAATCAAACCAATT
29265146 TAATCAAACCAATT
1 TAATCAAACCAATT
29265160 TA
1 TA
29265162 TAATAACATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (14 bp):
TAATCAAACCAATT
Found at i:29265766 original size:43 final size:42
Alignment explanation
Indices: 29265597--29265766 Score: 186
Period size: 43 Copynumber: 4.0 Consensus size: 42
29265587 ATATCGTACA
* *
29265597 ATGCCAACGTCCCAGACGTGGTCTTACATGCCATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AATCACATATCG
* * * *
29265640 GTGCC-ACTGTCCCAGATAG-GGTCTTACATGAATCAAATA-CG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGAATCACATATCG
* *
29265681 A-GCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AATCACATATCG
*
29265723 ATGCCAACGTCCCAGACGTGGTCTTACACGAGAACACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGA-ATCACATATCG
29265766 A
1 A
29265767 GAATCCTATG
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
40 21 0.20
41 11 0.10
42 13 0.12
43 60 0.57
44 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAATCACATATCG
Found at i:29267332 original size:43 final size:42
Alignment explanation
Indices: 29267163--29267332 Score: 177
Period size: 43 Copynumber: 4.0 Consensus size: 42
29267153 ATATCGTACA
* *
29267163 ATGCCAACGTCCCAGACGTGGTCTTACATGCCATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AATCACATATCG
* * * *
29267206 GTGCC-ACTGTCCCAGATAG-GGTCTTACATGAATCAAATA-CG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGAATCACATATCG
* * *
29267247 A-GCCAATGTACCAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AATCACATATCG
*
29267289 ATGCCAACGTCCCAGACGTGGTCTTACACGAGAACACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGA-ATCACATATCG
29267332 A
1 A
29267333 AAATCCTATG
Statistics
Matches: 104, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
40 20 0.19
41 11 0.11
42 13 0.12
43 59 0.57
44 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAATCACATATCG
Found at i:29268284 original size:14 final size:14
Alignment explanation
Indices: 29268265--29268300 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
29268255 CTCAATGAAA
29268265 TAATCAAACCAATT
1 TAATCAAACCAATT
29268279 TAATCAAACCAATT
1 TAATCAAACCAATT
29268293 TAATCAAA
1 TAATCAAA
29268301 TAAATAACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.53, C:0.19, G:0.00, T:0.28
Consensus pattern (14 bp):
TAATCAAACCAATT
Found at i:29275096 original size:40 final size:40
Alignment explanation
Indices: 29275034--29275216 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
29275024 AACCCAAGTA
* * * *
29275034 CCTTCGGGATTTA-ACCGGATATAGCAAATCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
29275073 CCTTCGGGACTTAGCCCGGATATAGTAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACT-AGCACAAATG
* *
29275113 CCTTCGGGTCTTAGCCCGGATATCGTC-ACTAG-AGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCA-CAAATG
*
29275153 CCTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAAGTG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAA-TG
* *
29275194 CCTTCGGGTCTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
29275217 CATCCGAATA
Statistics
Matches: 124, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 15 0.12
40 85 0.69
41 24 0.19
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:29275189 original size:80 final size:81
Alignment explanation
Indices: 29275067--29275217 Score: 252
Period size: 80 Copynumber: 1.9 Consensus size: 81
29275057 GCAAATCGCA
* *
29275067 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAA-TGCCTTCGGGTCTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTCACACAAAGTGCCTTCGGGTCTTAGCCCA
29275131 GATATCGTCACTAGAG
66 GATATCGTCACTAGAG
*
29275147 CAAATGCCTTCGGGACTTAGCCCGGATATAGCCACT-AGCACAAAGTGCCTTCGGGTCTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTCA-CACAAAGTGCCTTCGGGTCTTAGCCC
29275211 AGATATC
65 AGATATC
29275218 ATCCGAATAA
Statistics
Matches: 66, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
79 1 0.02
80 40 0.61
81 25 0.38
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTCACACAAAGTGCCTTCGGGTCTTAGCCCA
GATATCGTCACTAGAG
Found at i:29281463 original size:11 final size:11
Alignment explanation
Indices: 29281447--29281478 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
29281437 AGGAGCTTGG
29281447 TACTTTTAAAC
1 TACTTTTAAAC
29281458 TACTTTTAAAC
1 TACTTTTAAAC
29281469 TACTTTTAAA
1 TACTTTTAAA
29281479 AGTGTCCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.38, C:0.16, G:0.00, T:0.47
Consensus pattern (11 bp):
TACTTTTAAAC
Found at i:29282819 original size:13 final size:13
Alignment explanation
Indices: 29282801--29282825 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29282791 CCAAGTACAC
29282801 GCCCGTGTCCTTG
1 GCCCGTGTCCTTG
29282814 GCCCGTGTCCTT
1 GCCCGTGTCCTT
29282826 CACAAGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.28, T:0.32
Consensus pattern (13 bp):
GCCCGTGTCCTTG
Found at i:29286145 original size:48 final size:48
Alignment explanation
Indices: 29286023--29286147 Score: 171
Period size: 48 Copynumber: 2.6 Consensus size: 48
29286013 TGAGATTATA
* * * *
29286023 TGTAAGACCATGTTTGGGACATAGCACCGGTGATGATATATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGTAATGATATATGTGCCTG
*
29286071 TGTAAGACCATGTCTGGGACATGGCATCGGTAATGATATGTGTGCCAT-
1 TGTAAGACCATGTCTGGGACATGGCATCGGTAATGATATATGTGCC-TG
* *
29286119 TGTAAGACCATGTCTGGAACACGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
29286148 ACGATGATAT
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
48 68 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGTAATGATATATGTGCCTG
Found at i:29286155 original size:48 final size:48
Alignment explanation
Indices: 29286054--29286160 Score: 144
Period size: 48 Copynumber: 2.2 Consensus size: 48
29286044 TAGCACCGGT
* * * **
29286054 GATGATATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGT
1 GATGATATGTGTGCCTGTGTAAGACCATGTCTGGAACACGGCATCGAC
*
29286102 AATGATATGTGTGCCAT-TGTAAGACCATGTCTGGAACACGGCATCGAC
1 GATGATATGTGTGCC-TGTGTAAGACCATGTCTGGAACACGGCATCGAC
29286150 GATGATATGTG
1 GATGATATGTG
29286161 GATTCATGTA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
48 50 0.98
49 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (48 bp):
GATGATATGTGTGCCTGTGTAAGACCATGTCTGGAACACGGCATCGAC
Found at i:29303127 original size:39 final size:39
Alignment explanation
Indices: 29303076--29303256 Score: 283
Period size: 39 Copynumber: 4.6 Consensus size: 39
29303066 TGTGTGAGAT
* *
29303076 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
** *
29303115 TTATATAGGGGCTAAGTCCCAAAGGCATTCGTGCTAGTG
1 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
29303154 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
1 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
* *
29303193 TTATAT-TCGGGCTAAATCCCGAAGGCATTCGTGCTGGTG
1 TTATATCT-GGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
29303232 TTATATCTGGGCTAAGTCCCGAAGG
1 TTATATCTGGGCTAAGTCCCGAAGG
29303257 GAATTATGTT
Statistics
Matches: 130, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 128 0.98
40 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (39 bp):
TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
Found at i:29307110 original size:20 final size:19
Alignment explanation
Indices: 29307074--29307124 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
29307064 AAGGGCTATT
*
29307074 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
29307093 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
29307113 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
29307125 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:29308045 original size:49 final size:50
Alignment explanation
Indices: 29307876--29308048 Score: 226
Period size: 49 Copynumber: 3.5 Consensus size: 50
29307866 TACAAGCTAG
* * *
29307876 TGTAAGACCTGTCTGGGACATGGCGTCAGCACT-GATAGATGAGAGCCAA
1 TGTAAGACCTGTCTGGGACATGACATCGGCACTCGATAGATGAGAGCCAA
* * *
29307925 TGTAAGACCTGTCTAGGACATGGCATCGACAC-CGATAGATGAGAGCCAA
1 TGTAAGACCTGTCTGGGACATGACATCGGCACTCGATAGATGAGAGCCAA
* * *
29307974 TGTAAGACCTGTCTGGGACATGACATCGGC-CTCGATATATGAAAGTCAA
1 TGTAAGACCTGTCTGGGACATGACATCGGCACTCGATAGATGAGAGCCAA
* *
29308023 TGTAAGATCTATCTGGGACATGACAT
1 TGTAAGACCTGTCTGGGACATGACAT
29308049 TGACTTTAAT
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
48 1 0.01
49 109 0.99
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.23
Consensus pattern (50 bp):
TGTAAGACCTGTCTGGGACATGACATCGGCACTCGATAGATGAGAGCCAA
Found at i:29311447 original size:48 final size:48
Alignment explanation
Indices: 29311375--29311547 Score: 247
Period size: 48 Copynumber: 3.6 Consensus size: 48
29311365 AATAAGATTT
* * *
29311375 TGTGTAAGACCATGTCTGGTACATGGCATCGGTGATGATATATGTGCC
1 TGTGTAAGACCATGTCCGGGACATGGCATCGGCGATGATATATGTGCC
* *
29311423 TGTGTAAGACCATGTCCAGGACATGGCATCGGCGATGATATAAGTGCC
1 TGTGTAAGACCATGTCCGGGACATGGCATCGGCGATGATATATGTGCC
* * * *
29311471 TGTGTAAGACCATGTCTGGGACATTGCATCGACAATGATATATGTGCC
1 TGTGTAAGACCATGTCCGGGACATGGCATCGGCGATGATATATGTGCC
* *
29311519 TATGTAAGACCATGTCTGGGACATGGCAT
1 TGTGTAAGACCATGTCCGGGACATGGCAT
29311548 TGGTACTTTT
Statistics
Matches: 112, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 112 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (48 bp):
TGTGTAAGACCATGTCCGGGACATGGCATCGGCGATGATATATGTGCC
Found at i:29314595 original size:15 final size:15
Alignment explanation
Indices: 29314575--29314605 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
29314565 TGTTATAATG
*
29314575 TTAGTCAAGTTTTTA
1 TTAGTCAAGGTTTTA
29314590 TTAGTCAAGGTTTTA
1 TTAGTCAAGGTTTTA
29314605 T
1 T
29314606 GATACAGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.16, T:0.52
Consensus pattern (15 bp):
TTAGTCAAGGTTTTA
Found at i:29328975 original size:43 final size:42
Alignment explanation
Indices: 29328886--29329033 Score: 126
Period size: 43 Copynumber: 3.5 Consensus size: 42
29328876 TGTGATTACA
*
29328886 TGTAAGACCATGTCTAGGACATTGGCAT--TGT-ATTGAGATTAT-G
1 TGTAAGACCATGTCTGGGACATT-GCATCAT-TAATT--GATT-TCG
29328929 TGTAAGACCATGTCTGGGACATTAGCATCATTAATTGATTTCG
1 TGTAAGACCATGTCTGGGACATT-GCATCATTAATTGATTTCG
* * ** *
29328972 TGTAAGACCTTGTCTGGGACAGTTGCATCGA-TAAGTGATAACA
1 TGTAAGACCATGTCTGGGACA-TTGCATC-ATTAATTGATTTCG
*
29329015 TGTAAGACCATATCTGGGA
1 TGTAAGACCATGTCTGGGA
29329034 TATGGCATTG
Statistics
Matches: 90, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
42 1 0.01
43 81 0.90
44 4 0.04
45 4 0.04
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGCATCATTAATTGATTTCG
Found at i:29334436 original size:25 final size:25
Alignment explanation
Indices: 29334390--29334437 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
29334380 TTATAATATG
* * * *
29334390 AAAATGACCGTTTTGCCTCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
29334415 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
29334438 GGGTAAATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:29334540 original size:20 final size:20
Alignment explanation
Indices: 29334474--29334540 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
29334464 ATTTTAATAA
* *
29334474 ACATGGTATGGATGATATGC
1 ACATGATATGTATGATATGC
* *
29334494 ACATGACATGTATGATGTGC
1 ACATGATATGTATGATATGC
29334514 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
29334534 ACATGAT
1 ACATGAT
29334541 GTATTCATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:29334619 original size:25 final size:24
Alignment explanation
Indices: 29334590--29334661 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
29334580 GAGGAAGAGT
29334590 AAAAGGGCTTATGCCCCAGTTATG
1 AAAAGGGCTTATGCCCCAGTTATG
*
29334614 ATAAAGGGCTT-TGCCCCAGTTATT
1 A-AAAGGGCTTATGCCCCAGTTATG
*
29334638 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
29334662 ATGAAAAAGC
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
23 5 0.12
24 20 0.48
25 17 0.40
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATG
Found at i:29334909 original size:31 final size:31
Alignment explanation
Indices: 29334855--29334915 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
29334845 CGTTTACAGT
*
29334855 AAAGGCTTCGGCCCAGTAATATGAGATATGG
1 AAAGGCTTCGGCCCAGTAATATGAAATATGG
**
29334886 AAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
29334916 AAATATGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGG
Found at i:29339490 original size:85 final size:85
Alignment explanation
Indices: 29339386--29339564 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
29339376 GGCCGGCCAT
29339386 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
29339451 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
29339471 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
29339536 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
29339556 GGGCATGGG
1 GAGCATGGG
29339565 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:29340885 original size:47 final size:47
Alignment explanation
Indices: 29340831--29341425 Score: 876
Period size: 47 Copynumber: 12.6 Consensus size: 47
29340821 TATTTGAATA
* *
29340831 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
29340878 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
29340925 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
29340972 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
29341021 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
29341068 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
29341117 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
29341164 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
29341211 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
29341258 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
29341305 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
29341352 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
29341399 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
29341426 TCCCGAAGGG
Statistics
Matches: 519, Mismatches: 23, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 425 0.82
49 92 0.18
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:29341303 original size:22 final size:22
Alignment explanation
Indices: 29341276--29341397 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
29341266 CATGTGTATG
29341276 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
29341298 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
29341323 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
29341345 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
29341370 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
29341392 TGTGAT
1 TGTGAT
29341398 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:29343916 original size:38 final size:38
Alignment explanation
Indices: 29343852--29343926 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
29343842 AATCCGAGTT
*
29343852 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
29343890 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
29343927 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:29344048 original size:40 final size:40
Alignment explanation
Indices: 29343980--29344298 Score: 491
Period size: 40 Copynumber: 8.1 Consensus size: 40
29343970 AGGTCTCGAC
29343980 GATG-ATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
29344018 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
29344058 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
29344098 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
29344137 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
29344177 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * ** * *
29344217 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
29344257 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
29344297 GA
1 GA
29344299 CGTGTATTCG
Statistics
Matches: 261, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
38 4 0.02
39 52 0.20
40 205 0.79
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:29344200 original size:119 final size:119
Alignment explanation
Indices: 29343980--29344298 Score: 496
Period size: 119 Copynumber: 2.7 Consensus size: 119
29343970 AGGTCTCGAC
*
29343980 GATG-ATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGA
1 GATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGA
29344044 GCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
66 GCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
29344098 GATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGA
1 GATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGA
* *
29344163 GCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
66 GCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * ** * * * * *
29344217 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAG
1 GATGTATCCGGGCT-AAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
* *
29344282 AGCAATCATGCTGGTGA
65 AGCATTCATGCTAGTGA
29344299 CGTGTATTCG
Statistics
Matches: 185, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
118 4 0.02
119 123 0.66
120 58 0.31
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
GATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGA
GCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:29345696 original size:84 final size:85
Alignment explanation
Indices: 29345552--29345729 Score: 340
Period size: 84 Copynumber: 2.1 Consensus size: 85
29345542 GGCCGGCCAT
29345552 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
29345617 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
29345637 GAGCATGGGTGGACAAGATGTTATGGCT-AAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
29345701 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
29345721 GGGCATGGG
1 GAGCATGGG
29345730 CAATAAAATA
Statistics
Matches: 92, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
84 64 0.70
85 28 0.30
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:29347048 original size:47 final size:47
Alignment explanation
Indices: 29346994--29347587 Score: 867
Period size: 47 Copynumber: 12.6 Consensus size: 47
29346984 TATTTGAATA
* *
29346994 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
29347041 AATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
29347087 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
29347134 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
29347183 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
29347230 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
29347279 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
29347326 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
29347373 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGACAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
29347420 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
29347467 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
29347514 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
29347561 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
29347588 TCCCGAAGGG
Statistics
Matches: 517, Mismatches: 23, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
46 47 0.09
47 377 0.73
49 92 0.18
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Done.