Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 94 of 325
Found at i:30102749 original size:26 final size:27
Alignment explanation
Indices: 30102720--30102895 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
30102710 ATATTGAGTC
* *
30102720 CGCACACTCAGTGCTATATA-TCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
30102746 CGCACACTTAGTGCTACGTAATCAA-T
1 CGCACACTTAGTGCTACATAGTCAACT
30102772 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
30102800 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
30102827 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
30102854 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
30102881 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
30102896 GTACAATTTA
Statistics
Matches: 128, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
26 39 0.30
27 67 0.52
28 22 0.17
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:30102890 original size:81 final size:81
Alignment explanation
Indices: 30102740--30102894 Score: 233
Period size: 81 Copynumber: 1.9 Consensus size: 81
30102730 GTGCTATATA
* *
30102740 TCAACTCGCACACTTAGTGCTACGTAATCAATCGCACACTTAGTGCTACATAGTCAAACTCGCAC
1 TCAACTCGCACACTTAGTGCTACATAATCAATCGCACACTTAGTGCAACATAGTCAAACTCGCAC
30102805 ACTTAGTGCCGCATGG
66 ACTTAGTGCCGCATGG
* * *
30102821 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAA-TCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCA-ATCGCACACTTAGTGCAACATAGTCAAACTCGC
30102884 ACACTTAGTGC
64 ACACTTAGTGC
30102895 TGTACAATTT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
80 1 0.01
81 40 0.60
82 26 0.39
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAATCGCACACTTAGTGCAACATAGTCAAACTCGCAC
ACTTAGTGCCGCATGG
Found at i:30110763 original size:27 final size:27
Alignment explanation
Indices: 30110733--30110910 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
30110723 ATATTGAGTC
* * * *
30110733 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
30110760 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
30110787 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
30110815 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
30110842 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
30110869 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
30110896 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
30110911 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:30110872 original size:82 final size:81
Alignment explanation
Indices: 30110754--30110909 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
30110744 TGCTATATAA
* *
30110754 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
30110819 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
30110836 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
30110900 CACTTAGTGC
65 CACTTAGTGC
30110910 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:30134060 original size:40 final size:40
Alignment explanation
Indices: 30133737--30134046 Score: 476
Period size: 40 Copynumber: 7.8 Consensus size: 40
30133727 GAGAATTGAG
30133737 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
30133777 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
30133817 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
30133857 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
30133897 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
30133937 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** *
30133977 AGTGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
30134017 GGTGTTATATCCAGGCTAGGTCCCGAAGAG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAG
30134047 TAATCATGCT
Statistics
Matches: 244, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 244 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:30137452 original size:47 final size:47
Alignment explanation
Indices: 30137401--30138007 Score: 1011
Period size: 47 Copynumber: 12.7 Consensus size: 47
30137391 TTAGGATTCT
*
30137401 ATGTGATGGATGTGAACA-TGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
30137448 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
30137495 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
30137542 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
30137589 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
30137638 ATGTGATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCG
30137687 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
30137734 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
30137781 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
30137830 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
30137877 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* * * * *
30137926 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
30137973 ACGTGATTG-ATGTGAAGGTGTATAAATGTGATAAG
1 ATGTGA-TGAATGTGAAAGTGTATATATGTGATAAG
30138008 TCCCGAAGGG
Statistics
Matches: 535, Mismatches: 15, Indels: 20
0.94 0.03 0.04
Matches are distributed among these distances:
46 1 0.00
47 349 0.65
48 2 0.00
49 181 0.34
51 2 0.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:30137642 original size:96 final size:96
Alignment explanation
Indices: 30137401--30138007 Score: 1018
Period size: 96 Copynumber: 6.4 Consensus size: 96
30137391 TTAGGATTCT
*
30137401 ATGTGATGGATGTGAACA-TG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 ATGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
30137463 AAGTGTATATATGTGATAAGGCCTAATGGCCG
65 AAGTGTATATATGTGATAAGGCCTAATGGCCG
30137495 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
30137558 AGTGTATATATGTGATAAGGCCTAATGGCCG
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
30137589 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
30137654 AGCGTATATATATGTGATAAGGCCTAATGGCTG
66 A--GTGTATATATGTGATAAGGCCTAATGGCCG
30137687 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
30137750 AGTGTATATATGTGATAAGGCCTAATGGCCG
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
30137781 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
30137846 AGTGTATATATGTGATAAGGCCTAATGGCCG
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
30137877 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * *
30137942 AGTGTATATATGTGACAGGGCCGAGTGGCCA
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
* *
30137973 ACGTGATTG-ATGTGAAGGTGTATA-A-ATGTGATAAG
1 ATGTGA-TGAATGTGAAAGTGTATATATATGTGATAAG
30138008 TCCCGAAGGG
Statistics
Matches: 493, Mismatches: 12, Indels: 16
0.95 0.02 0.03
Matches are distributed among these distances:
93 1 0.00
94 169 0.34
95 1 0.00
96 272 0.55
97 2 0.00
98 48 0.10
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:30137744 original size:239 final size:238
Alignment explanation
Indices: 30137421--30138007 Score: 1034
Period size: 239 Copynumber: 2.5 Consensus size: 238
30137411 TGTGAACATG
30137421 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
30137486 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
30137551 ATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
131 ATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
30137615 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTA
194 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTA
*
30137660 TATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
30137725 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
30137790 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
131 ATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
30137855 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
195 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTA
* *
30137899 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
30137964 GAGTGGCCAACGTGATTG-ATGTGAAGGTGTATAAATGTGATAAG
66 TAATGGCCGATGTGA-TGAATGTGAAAGTGTATATATGTGATAAG
30138008 TCCCGAAGGG
Statistics
Matches: 334, Mismatches: 11, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
239 285 0.85
240 2 0.01
241 47 0.14
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (238 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTA
Found at i:30138181 original size:37 final size:37
Alignment explanation
Indices: 30138125--30138203 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
30138115 CCGAGCTCTA
* * *
30138125 AAGACCCGATGACTACGTGTGGGGA-TATTTTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTA-TGTCCGGGT
*
30138162 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
30138199 AAGAC
1 AAGAC
30138204 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:30142234 original size:16 final size:14
Alignment explanation
Indices: 30142198--30142225 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
30142188 TCAAATGAAA
30142198 ATACATCATTTGAT
1 ATACATCATTTGAT
30142212 ATACATCATTTGAT
1 ATACATCATTTGAT
30142226 TCATACATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (14 bp):
ATACATCATTTGAT
Found at i:30146999 original size:26 final size:26
Alignment explanation
Indices: 30146970--30147029 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
30146960 TCCCTTTGAA
* * *
30146970 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
30146996 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
30147024 CCATTC
1 TCATTC
30147030 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:30147015 original size:28 final size:28
Alignment explanation
Indices: 30146984--30147055 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
30146974 TCGATATTTT
*
30146984 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
30147012 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
30147040 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
30147056 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:30152047 original size:28 final size:28
Alignment explanation
Indices: 30152013--30152219 Score: 180
Period size: 28 Copynumber: 7.3 Consensus size: 28
30152003 ATCGATCTTA
* *
30152013 CACACACAGTGCTTGGTTACGGAACTCG
1 CACACACAGTGCTCGGTTACCGAACTCG
**** * *
30152041 CACACACAGTGCCTCAACAACCGATCTCA
1 CACACACAGTG-CTCGGTTACCGAACTCG
*
30152070 CACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCTCGGTTACCGAACTCG
** * *
30152098 CACACACAGTGCCTCAATAACCGATCTCG
1 CACACACAGTG-CTCGGTTACCGAACTCG
* **
30152127 CACACACAGTGCTTGGTTATGGAACTCG
1 CACACACAGTGCTCGGTTACCGAACTCG
**** *
30152155 CACACACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTG-CTCGGTTACCGAACTCG
* *
30152184 CACACACAGTGCTCGGTTACAGAACTCA
1 CACACACAGTGCTCGGTTACCGAACTCG
30152212 CACACACA
1 CACACACA
30152220 CAGTGCCTAT
Statistics
Matches: 134, Mismatches: 42, Indels: 6
0.74 0.23 0.03
Matches are distributed among these distances:
28 71 0.53
29 63 0.47
ACGTcount: A:0.30, C:0.35, G:0.18, T:0.17
Consensus pattern (28 bp):
CACACACAGTGCTCGGTTACCGAACTCG
Found at i:30152073 original size:57 final size:57
Alignment explanation
Indices: 30151982--30152219 Score: 359
Period size: 57 Copynumber: 4.1 Consensus size: 57
30151972 GATCTCATTT
* * * *
30151982 CACACACTTAGTGCCCCAACAATCGATCTTACACACACAGTGCTTGGTTACGGAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTCACACACACAGTGCTCGGTTACGGAACTCG
30152041 CACACACAGTGCCTCAACAACCGATCTCACACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCACACACACAGTGCTCGGTTACGGAACTCG
* * * *
30152098 CACACACAGTGCCTCAATAACCGATCTCGCACACACAGTGCTTGGTTATGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCACACACACAGTGCTCGGTTACGGAACTCG
* * *
30152155 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAACTCA
1 CACACACAGTGCCTCAACAACCGATCTCACACACACAGTGCTCGGTTACGGAACTCG
30152212 CACACACA
1 CACACACA
30152220 CAGTGCCTAT
Statistics
Matches: 166, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
57 159 0.96
59 7 0.04
ACGTcount: A:0.30, C:0.35, G:0.17, T:0.18
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCACACACACAGTGCTCGGTTACGGAACTCG
Found at i:30152081 original size:29 final size:29
Alignment explanation
Indices: 30152037--30152195 Score: 169
Period size: 29 Copynumber: 5.6 Consensus size: 29
30152027 GGTTACGGAA
*
30152037 CTCGCACACACAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTGCCTCAATAACCGAT
* ** * * *
30152066 CTCACACACACAGTG-CTCGGTTACGGAA
1 CTCGCACACACAGTGCCTCAATAACCGAT
30152094 CTCGCACACACAGTGCCTCAATAACCGAT
1 CTCGCACACACAGTGCCTCAATAACCGAT
*** * ** *
30152123 CTCGCACACACAGTG-CTTGGTTATGGAA
1 CTCGCACACACAGTGCCTCAATAACCGAT
*
30152151 CTCGCACACACAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTGCCTCAATAACCGAT
30152180 CTCGCACACACAGTGC
1 CTCGCACACACAGTGC
30152196 TCGGTTACAG
Statistics
Matches: 100, Mismatches: 28, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
28 42 0.42
29 58 0.58
ACGTcount: A:0.29, C:0.36, G:0.18, T:0.17
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCAATAACCGAT
Found at i:30160009 original size:28 final size:28
Alignment explanation
Indices: 30159946--30160043 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
30159936 ATATTAAGTC
*
30159946 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
30159973 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
30160001 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
30160030 CGCACACTTAGTGC
1 CGCACACTTAGTGC
30160044 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:30160489 original size:24 final size:24
Alignment explanation
Indices: 30160457--30160504 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
30160447 TTATACACAT
30160457 AATTAAAGGTAACATCACGAATGG
1 AATTAAAGGTAACATCACGAATGG
30160481 AATTAAAGGTAACATCACGAATGG
1 AATTAAAGGTAACATCACGAATGG
30160505 GCATACTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.21
Consensus pattern (24 bp):
AATTAAAGGTAACATCACGAATGG
Found at i:30164938 original size:40 final size:40
Alignment explanation
Indices: 30164855--30165117 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
30164845 TTGAATGCTG
* * * * * *
30164855 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
30164895 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
30164935 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
30164975 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
30165015 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
30165055 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
30165094 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
30165118 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:30165137 original size:79 final size:80
Alignment explanation
Indices: 30164894--30165152 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
30164884 AAGTGAATAT
* * * * * * *
30164894 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
30164958 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
30164974 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
30165039 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
30165054 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
30165118 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
30165133 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
30165153 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:30172861 original size:40 final size:40
Alignment explanation
Indices: 30172778--30173040 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
30172768 TTGAATGCTG
* * * * * *
30172778 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
30172818 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
30172858 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
30172898 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
30172938 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
30172978 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
30173017 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
30173041 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:30173060 original size:79 final size:80
Alignment explanation
Indices: 30172817--30173075 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
30172807 AAGTGAATAT
* * * * * * *
30172817 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
30172881 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
30172897 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
30172962 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
30172977 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
30173041 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
30173056 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
30173076 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:30181327 original size:20 final size:20
Alignment explanation
Indices: 30181289--30181327 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
30181279 TTAAGTTCTT
30181289 ATTTAATGTGAATGAATGAC
1 ATTTAATGTGAATGAATGAC
*
30181309 ATTTATTGT-AATGATATGA
1 ATTTAATGTGAATGA-ATGA
30181328 TTATTTGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (20 bp):
ATTTAATGTGAATGAATGAC
Found at i:30181774 original size:22 final size:21
Alignment explanation
Indices: 30181736--30181781 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
30181726 TACTAGCAGT
*
30181736 TTTAACTACAAACACTGATAG
1 TTTAACTACAAACACTGAAAG
* *
30181757 TTTATCTACAAATTACTGAAAG
1 TTTAACTACAAA-CACTGAAAG
30181779 TTT
1 TTT
30181782 TCATCTGCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.37
Consensus pattern (21 bp):
TTTAACTACAAACACTGAAAG
Found at i:30183570 original size:28 final size:28
Alignment explanation
Indices: 30183533--30183596 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
30183523 AATGAAATTA
30183533 AAAATATAAATA-TAATAAACCTAAAAAGT
1 AAAATATAAATAGTAAT-AACCTAAAAA-T
* *
30183562 AAAAT-TAAATAGTAATGACTTAAAAAT
1 AAAATATAAATAGTAATAACCTAAAAAT
30183589 AAAATATA
1 AAAATATA
30183597 TCAAATGACA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 6 0.19
28 16 0.52
29 9 0.29
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.27
Consensus pattern (28 bp):
AAAATATAAATAGTAATAACCTAAAAAT
Found at i:30184018 original size:26 final size:25
Alignment explanation
Indices: 30183982--30184034 Score: 88
Period size: 26 Copynumber: 2.1 Consensus size: 25
30183972 CATCGATTTA
30183982 TTTTTATATTGGATAAATATAATTAT
1 TTTTTATATTGGATAAATA-AATTAT
*
30184008 TTTTTATATTGGATAGATAAATTAT
1 TTTTTATATTGGATAAATAAATTAT
30184033 TT
1 TT
30184035 CTATTTTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (25 bp):
TTTTTATATTGGATAAATAAATTAT
Found at i:30184438 original size:20 final size:21
Alignment explanation
Indices: 30184415--30184469 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 21
30184405 GGCATTAAAA
*
30184415 TATTTATAATTTTTTTACA-G
1 TATTTATAATTTTTTTAAATG
30184435 TATTTACT--TTTTTTTAAATG
1 TATTTA-TAATTTTTTTAAATG
*
30184455 T-TGTATAATTTTTTT
1 TATTTATAATTTTTTT
30184470 TAAAAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
18 1 0.03
19 12 0.41
20 15 0.52
21 1 0.03
ACGTcount: A:0.25, C:0.04, G:0.05, T:0.65
Consensus pattern (21 bp):
TATTTATAATTTTTTTAAATG
Found at i:30185610 original size:21 final size:20
Alignment explanation
Indices: 30185581--30185643 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 20
30185571 CCTAGACATG
30185581 ATTT-TTAAATAATTATAAAA
1 ATTTATTAAA-AATTATAAAA
*
30185601 ATATTA-TAAAATATTATTTAAA
1 AT-TTATTAAAA-ATTA-TAAAA
*
30185623 ATTTATTAAAACTTATAAAA
1 ATTTATTAAAAATTATAAAA
30185643 A
1 A
30185644 ATAATATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
20 8 0.23
21 16 0.46
22 11 0.31
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
ATTTATTAAAAATTATAAAA
Found at i:30185680 original size:35 final size:36
Alignment explanation
Indices: 30185610--30185682 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 36
30185600 AATATTATAA
30185610 AATATTATTTAAAATTTATTAAAACTTATAAAAAAT
1 AATATTATTTAAAATTTATTAAAACTTATAAAAAAT
* **
30185646 AATATT-TTTTAAATTTATTTAAAA-TTATTTAAAAT
1 AATATTATTTAAAATTTA-TTAAAACTTATAAAAAAT
30185681 AA
1 AA
30185683 CGTCCAGAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
35 21 0.64
36 12 0.36
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (36 bp):
AATATTATTTAAAATTTATTAAAACTTATAAAAAAT
Found at i:30191958 original size:31 final size:31
Alignment explanation
Indices: 30191916--30191991 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
30191906 TCGTTGCCAA
*
30191916 GCAACCTGGGGTGGC-AGATCATCACTACCGT
1 GCAACCCGGGGTGGCGAG-TCATCACTACCGT
*
30191947 GCAACCCGGGGTGGCGAGTCATCACTGCCGT
1 GCAACCCGGGGTGGCGAGTCATCACTACCGT
* *
30191978 GCAACTCAGGGTGG
1 GCAACCCGGGGTGG
30191992 TTGGCCATCG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
31 38 0.95
32 2 0.05
ACGTcount: A:0.20, C:0.29, G:0.34, T:0.17
Consensus pattern (31 bp):
GCAACCCGGGGTGGCGAGTCATCACTACCGT
Found at i:30194725 original size:19 final size:19
Alignment explanation
Indices: 30194701--30194741 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
30194691 GACATAGCAT
*
30194701 ATAATGGTACATGGTTATA
1 ATAATGGTACATGGTCATA
30194720 ATAATGGTACATGGTCATA
1 ATAATGGTACATGGTCATA
30194739 ATA
1 ATA
30194742 TGGCCTAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34
Consensus pattern (19 bp):
ATAATGGTACATGGTCATA
Found at i:30204453 original size:20 final size:19
Alignment explanation
Indices: 30204430--30204486 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
30204420 ATAACCTGTG
30204430 GTTCATCCGTATAAACAATA
1 GTTCATCCGTA-AAACAATA
* *
30204450 GTTCATCAGTAATAACAGTA
1 GTTCATCCGTAA-AACAATA
*
30204470 ATTCATCCGTACAAACA
1 GTTCATCCGTA-AAACA
30204487 CATATTTTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 29 0.94
21 1 0.03
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (19 bp):
GTTCATCCGTAAAACAATA
Found at i:30204696 original size:23 final size:23
Alignment explanation
Indices: 30204670--30204726 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
30204660 CTCTATTGAC
**
30204670 CTGAAACGGTAAGGTCAGAAGAG
1 CTGAAACGGTAAGCCCAGAAGAG
*
30204693 CTG-AACGGTAAGCCCTGAAGAG
1 CTGAAACGGTAAGCCCAGAAGAG
*
30204715 CTAAAACGGTAA
1 CTGAAACGGTAA
30204727 CATCATATGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 18 0.62
23 11 0.38
ACGTcount: A:0.39, C:0.18, G:0.30, T:0.14
Consensus pattern (23 bp):
CTGAAACGGTAAGCCCAGAAGAG
Found at i:30207255 original size:49 final size:50
Alignment explanation
Indices: 30207200--30207445 Score: 307
Period size: 49 Copynumber: 4.9 Consensus size: 50
30207190 ATCTATTGTG
* * *
30207200 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATTATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
30207250 -GGTCACATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * **
30207300 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
30207350 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
30207400 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
30207446 GCTTTGGCTA
Statistics
Matches: 169, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
49 83 0.49
50 48 0.28
51 38 0.22
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:30207337 original size:28 final size:27
Alignment explanation
Indices: 30207305--30207388 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 27
30207295 AACTTCGATC
30207305 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGT-CAGGCTACT
* * *
30207333 ACGTGTATCAG-A-T-GGTTAGG-T-C-
1 ACGTGTGT-AGTACTAAGTCAGGCTACT
30207355 ACGTGTGTAGTACTAAGTACAGGCTACT
1 ACGTGTGTAGTACTAAGT-CAGGCTACT
30207383 ACGTGT
1 ACGTGT
30207389 ACCAGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (27 bp):
ACGTGTGTAGTACTAAGTCAGGCTACT
Found at i:30207397 original size:101 final size:98
Alignment explanation
Indices: 30207203--30207444 Score: 313
Period size: 100 Copynumber: 2.4 Consensus size: 98
30207193 TATTGTGAGG
* * *
30207203 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATTATTGGTCACATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACT
** * *
30207268 AAGTGTAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTACAGGCTACTACGCGTACCAGATAA-TT-GA
* * *
30207303 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATT-GGTCACATGTGTAGTAC
* *
30207368 TAAGTACAGGCTACTACGTGTACCAGATAATTGG
65 TAAGTACAGGCTACTACGCGTACCAGATAATTGA
* * * *
30207402 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
30207445 AGCTTTGGCT
Statistics
Matches: 124, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
99 39 0.31
100 44 0.35
101 41 0.33
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACT
AAGTACAGGCTACTACGCGTACCAGATAATTGA
Found at i:30213024 original size:25 final size:25
Alignment explanation
Indices: 30212977--30213024 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
30212967 TTATAATATG
* * * *
30212977 AAAATGACCGTTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
30213002 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
30213025 GTTTATATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:30213086 original size:20 final size:20
Alignment explanation
Indices: 30213061--30213103 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
30213051 ATTTTGATAA
30213061 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
30213081 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
30213101 ACA
1 ACA
30213104 CGAGATGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:30213111 original size:20 final size:20
Alignment explanation
Indices: 30213068--30213111 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
30213058 TAAACATGAT
* *
30213068 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACACGAG
30213088 ATGTATGATATGCACACGAG
1 ATGTATGATATGCACACGAG
30213108 ATGT
1 ATGT
30213112 TCATAAATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACACGAG
Found at i:30213227 original size:47 final size:47
Alignment explanation
Indices: 30213158--30213255 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 47
30213148 AGGAAGTGCA
30213158 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
30213205 AAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAAAGGGCTTTGCCCCAGTTATT
30213253 AAA
1 AAA
30213256 AGAGGCTAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 23 0.47
48 16 0.33
49 10 0.20
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:30213272 original size:25 final size:24
Alignment explanation
Indices: 30213157--30213276 Score: 174
Period size: 24 Copynumber: 5.0 Consensus size: 24
30213147 GAGGAAGTGC
30213157 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
30213181 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
30213205 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
30213228 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
30213253 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
30213277 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 1, Indels: 11
0.88 0.01 0.11
Matches are distributed among these distances:
23 29 0.33
24 30 0.34
25 21 0.24
26 9 0.10
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:30221039 original size:25 final size:25
Alignment explanation
Indices: 30221010--30221057 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
30221000 TTATAATATG
* * *
30221010 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
30221035 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
30221058 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:30221108 original size:9 final size:9
Alignment explanation
Indices: 30221096--30221152 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
30221086 TTTGATAAAC
30221096 ATGATATGT
1 ATGATATGT
*
30221105 ATGATATGCAC
1 ATGATATG--T
*
30221116 ATGACATGT
1 ATGATATGT
*
30221125 ATGATATGCAC
1 ATGATATG--T
30221136 ATGATATGT
1 ATGATATGT
30221145 ATGATATG
1 ATGATATG
30221153 CACACTAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:30221119 original size:20 final size:20
Alignment explanation
Indices: 30221094--30221156 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
30221084 ATTTTGATAA
30221094 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
30221114 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
30221134 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
30221154 ACA
1 ACA
30221157 CTAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:30221289 original size:23 final size:24
Alignment explanation
Indices: 30221210--30221334 Score: 209
Period size: 24 Copynumber: 5.2 Consensus size: 24
30221200 GAGAAAGTAC
30221210 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
30221234 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
30221258 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
30221282 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
30221305 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
30221330 AAAAG
1 AAAAG
30221335 AGGATAGGCC
Statistics
Matches: 96, Mismatches: 2, Indels: 7
0.91 0.02 0.07
Matches are distributed among these distances:
23 27 0.28
24 47 0.49
25 13 0.14
26 9 0.09
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:30221581 original size:31 final size:31
Alignment explanation
Indices: 30221546--30221609 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
30221536 CGTTTACAGT
30221546 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
30221577 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
30221608 AA
1 AA
30221610 TATGAATAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:30227288 original size:101 final size:101
Alignment explanation
Indices: 30227113--30227297 Score: 334
Period size: 101 Copynumber: 1.8 Consensus size: 101
30227103 AGGTATTTAT
* * *
30227113 TGATAAATAACTTGTGTATATGCATGACTTATTTAAGAATAAAAATATAGGTTTAATATTCCATA
1 TGATAAATAACCTATGTATATACATGACTTATTTAAGAATAAAAATATAGGTTTAATATTCCATA
30227178 ATGAAATTATTGATATGTTCTGTATATAAGTTCAAC
66 ATGAAATTATTGATATGTTCTGTATATAAGTTCAAC
*
30227214 TGATAAATTACCTATGTATATACATGACTTATTTAAGAATAAAAATATAGGTTTAATATTCCATA
1 TGATAAATAACCTATGTATATACATGACTTATTTAAGAATAAAAATATAGGTTTAATATTCCATA
30227279 ATGAAATTATTGATATGTT
66 ATGAAATTATTGATATGTT
30227298 ATATGTTCTG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 80 1.00
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.40
Consensus pattern (101 bp):
TGATAAATAACCTATGTATATACATGACTTATTTAAGAATAAAAATATAGGTTTAATATTCCATA
ATGAAATTATTGATATGTTCTGTATATAAGTTCAAC
Found at i:30228009 original size:24 final size:25
Alignment explanation
Indices: 30227977--30228039 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
30227967 TATTGAGCTG
*
30227977 AAACGGTAAGCTCTGACAAGATGA-
1 AAACAGTAAGCTCTGACAAGATGAT
* * *
30228001 AAACAGTAAGTTCTTACAAGCTGAT
1 AAACAGTAAGCTCTGACAAGATGAT
*
30228026 ATATCAGTAAGCTC
1 A-AACAGTAAGCTC
30228040 ATACGAGCTA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
24 20 0.65
25 1 0.03
26 10 0.32
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (25 bp):
AAACAGTAAGCTCTGACAAGATGAT
Found at i:30230396 original size:14 final size:14
Alignment explanation
Indices: 30230369--30230406 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
30230359 ATATATATGT
30230369 TGTA-ATAATAATA
1 TGTATATAATAATA
*
30230382 TGTATATAATTATA
1 TGTATATAATAATA
30230396 TGTATATAATA
1 TGTATATAATA
30230407 TAAGTTATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 4 0.18
14 18 0.82
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (14 bp):
TGTATATAATAATA
Found at i:30236123 original size:23 final size:23
Alignment explanation
Indices: 30236097--30236144 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
30236087 CTCCGAAGAA
30236097 TGTTTCTAAAGTCTGAAGCTTTC
1 TGTTTCTAAAGTCTGAAGCTTTC
*
30236120 TGTTTCTGAAGTCTGAAGCTTTC
1 TGTTTCTAAAGTCTGAAGCTTTC
30236143 TG
1 TG
30236145 GGACTTGCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.44
Consensus pattern (23 bp):
TGTTTCTAAAGTCTGAAGCTTTC
Found at i:30240618 original size:40 final size:40
Alignment explanation
Indices: 30240563--30240824 Score: 420
Period size: 40 Copynumber: 6.6 Consensus size: 40
30240553 TATTCGGATG
*
30240563 ATAACCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
30240603 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
30240643 ATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
30240683 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
30240723 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
30240763 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
30240803 ATATCC-GGCTAATTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
30240825 TACTTGGTTT
Statistics
Matches: 210, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 17 0.08
40 193 0.92
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:30244638 original size:26 final size:26
Alignment explanation
Indices: 30244599--30244650 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
30244589 CAAGGTCAAG
*
30244599 GACGAATGCGTAATATACAATTTGAA
1 GACGAATGCATAATATACAATTTGAA
30244625 GACGAATGCATAATATACAATTTGAA
1 GACGAATGCATAATATACAATTTGAA
30244651 CTATTCATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.27
Consensus pattern (26 bp):
GACGAATGCATAATATACAATTTGAA
Found at i:30246592 original size:27 final size:27
Alignment explanation
Indices: 30246559--30246653 Score: 93
Period size: 27 Copynumber: 3.5 Consensus size: 27
30246549 GGACTATATT
*
30246559 GTGTTTACTTTCCTAGCGGACTACCCT
1 GTGTTTACTTTCCTAGCGGACTACCCC
* **
30246586 GTATTTA-TTGTCCTAGTAGACTACCCC
1 GTGTTTACTT-TCCTAGCGGACTACCCC
* * * *
30246613 GTGTTTACTATCTTGGCGAACTACCCC
1 GTGTTTACTTTCCTAGCGGACTACCCC
*
30246640 CTGTTTACTTTCCT
1 GTGTTTACTTTCCT
30246654 GATGGGCTAC
Statistics
Matches: 52, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
26 2 0.04
27 49 0.94
28 1 0.02
ACGTcount: A:0.17, C:0.28, G:0.16, T:0.39
Consensus pattern (27 bp):
GTGTTTACTTTCCTAGCGGACTACCCC
Found at i:30249710 original size:64 final size:63
Alignment explanation
Indices: 30249629--30249812 Score: 183
Period size: 67 Copynumber: 2.9 Consensus size: 63
30249619 AGACATTATG
*
30249629 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * *
30249692 TATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGGCAAGAGAGCTACGAGA
1 -ATGTAGCTAGGTCGCATGGGTGA-TACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
30249757 TA
62 TA
** * * * *
30249759 A-ACAGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTA-GCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
30249813 CGGACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 23 0.24
65 7 0.07
66 18 0.19
67 29 0.30
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.22
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:30249752 original size:67 final size:64
Alignment explanation
Indices: 30249605--30249758 Score: 173
Period size: 67 Copynumber: 2.3 Consensus size: 64
30249595 CATCATGTGT
* * * * *
30249605 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC--GAGA-TAT-ATGTAGCTAGGTCGCATGCGTGATACAATGAGGACACCATG
30249670 TAG
62 TAG
* *
30249673 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGA-TACAA-TG-AGGACACCATGT
30249738 AG
63 AG
*
30249740 GCAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACGAGATA
30249759 AACAGGCTAG
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
64 22 0.30
65 6 0.08
66 4 0.05
67 29 0.39
68 13 0.18
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGATACAATGAGGACACCATGTAG
Found at i:30252926 original size:24 final size:24
Alignment explanation
Indices: 30252891--30252962 Score: 108
Period size: 24 Copynumber: 3.0 Consensus size: 24
30252881 TGATATTGTG
*
30252891 CTAAGTGAAATAAGACCGTGGCAT
1 CTAAGTGAAATAAGACCATGGCAT
* * *
30252915 CTCAGTGAAATAAGTCTATGGCAT
1 CTAAGTGAAATAAGACCATGGCAT
30252939 CTAAGTGAAATAAGACCATGGCAT
1 CTAAGTGAAATAAGACCATGGCAT
30252963 TGTGCTAAGT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.24
Consensus pattern (24 bp):
CTAAGTGAAATAAGACCATGGCAT
Found at i:30262997 original size:42 final size:43
Alignment explanation
Indices: 30262885--30263006 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 43
30262875 ATCGAGTTGC
* * **
30262885 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGT
1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATCGTATAAT
*
30262928 GATTTCATGTAAGACCATGTTTGGGACATTGGCATCGTATAAT
1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATCGTATAAT
* * * *
30262971 GA-TTCGTGTAAGACCCTGTCTAGGACAATGGCATCG
1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATCG
30263007 ATATGTGACA
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
42 29 0.42
43 40 0.58
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
GATTTCATGTAAGACCATGTCTGGGACATTGGCATCGTATAAT
Found at i:30264660 original size:20 final size:19
Alignment explanation
Indices: 30264624--30264674 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
30264614 AAAGGTTATT
*
30264624 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
30264643 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
30264663 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
30264675 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:30265384 original size:47 final size:47
Alignment explanation
Indices: 30265319--30265724 Score: 311
Period size: 48 Copynumber: 8.6 Consensus size: 47
30265309 GACGTGTGCT
30265319 AGTGTAAGA-CATGTCTGGGACAT-GCATCAACCACATT-ATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC--CCACATTGATGAGAGCC
** *
30265365 AGTGTAAGACCATGTCTGGGACATGGCAT-CGGCATTGA-GACAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCCCACATTGATG---AGAGCC
30265413 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCCACATT-ATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC--CCACATTGATGAGAGCC
* ** * *
30265460 AGTATAAGACCATGTCTGGGACATGGCAT-CGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCCCACATT--GATGAGAGCC
* * * * *
30265508 AGTGTAAGACCATGTCTGGGACATGGCAT-CGACCTTGAGATATATAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCCCACATT--GAT-GA-GAGCC
* ** * * * *
30265558 AGTGTAAGACC-TGTCTGGGACATGGC--GCCAGTTTGTTGTGTGAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCCCACATTGATGAGAGCC
* * *
30265602 AGTGTAAGACC-TATCTGGGACATGGCATCGACACCGATAGATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-CCA-C-ATTGATGAGAGCC
* * *
30265651 AGTGTAAGACC-TGTCTGAGACATGGCAT-CCACTTTGATGTGCTAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCCCACATTGATGAG--AGCC
30265698 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACCATGTCTGGGACATGGC
30265725 GTCGGCATCT
Statistics
Matches: 291, Mismatches: 44, Indels: 48
0.76 0.11 0.13
Matches are distributed among these distances:
44 26 0.09
45 17 0.06
46 13 0.04
47 65 0.22
48 99 0.34
49 50 0.17
50 21 0.07
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCCCACATTGATGAGAGCC
Found at i:30265478 original size:95 final size:95
Alignment explanation
Indices: 30265316--30265537 Score: 401
Period size: 95 Copynumber: 2.3 Consensus size: 95
30265306 GGTGACGTGT
*
30265316 GCTAGTGTAAGA-CATGTCTGGGACATGCATCAACCACATTATGAGAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCAACCACATTATGAGAGCCAGTATAAGACCATGT
30265380 CTGGGACATGGCATCGGCATTGAGACAAGA
66 CTGGGACATGGCATCGGCATTGAGACAAGA
*
30265410 GCTAGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTATAAGACCATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCAACCACATTATGAGAGCCAGTATAAGACCATGT
*
30265475 CTGGGACATGGCATCGGCATTGAGACGAGA
66 CTGGGACATGGCATCGGCATTGAGACAAGA
30265505 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATC
30265538 GACCTTGAGA
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
94 12 0.10
95 106 0.86
96 5 0.04
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (95 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCAACCACATTATGAGAGCCAGTATAAGACCATGT
CTGGGACATGGCATCGGCATTGAGACAAGA
Found at i:30265629 original size:93 final size:97
Alignment explanation
Indices: 30265319--30265724 Score: 328
Period size: 95 Copynumber: 4.3 Consensus size: 97
30265309 GACGTGTGCT
* * *
30265319 AGTGTAAGA-CATGTCTGGGACAT-GCATCAAC-CACAT-TATGAGAGCCAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACACAGATAGATGAGAGCCAGTGTAAGACC-TGT
* * ** * * *
30265380 CTGGGACATGGCATCGGCATTGA-G-ACAAGAGC
65 CTGAGACATGGCAGCCACTTTGATGTGCTAGA-C
* * *
30265412 TAGTGTAAGACCATGTCTGGGACAT-GCATC-AGC-CACAT-TATGAGAGCCAGTATAAGACCAT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGA-CACAGATAGATGAGAGCCAGTGTAAGACC-T
* * ** * * *
30265473 GTCTGGGACATGGCATCGGCATTGA-G-ACGAGAGC
63 GTCTGAGACATGGCAGCCACTTTGATGTGCTAGA-C
* *
30265507 TAGTGTAAGACCATGTCTGGGACATGGCATCGAC-CTTGAGATATAT-A-AGCTAGTGTAAGACC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGACAC---AGATAGATGAGAGCCAGTGTAAGACC
* * *
30265569 TGTCTGGGACATGGC-GCCAGTTTGTTGTG-T-GAC
62 TGTCTGAGACATGGCAGCCACTTTGATGTGCTAGAC
* *
30265602 AGTGTAAGACC-TATCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGACCTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACACAGATAGATGAGAGCCAGTGTAAGACCTGTC
* *
30265666 TGAGACATGGCATCCACTTTGATGTGCTAGCC
66 TGAGACATGGCAGCCACTTTGATGTGCTAGAC
30265698 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACCATGTCTGGGACATGGC
30265725 GTCGGCATCT
Statistics
Matches: 272, Mismatches: 23, Indels: 31
0.83 0.07 0.10
Matches are distributed among these distances:
91 6 0.02
92 1 0.00
93 48 0.18
94 33 0.12
95 107 0.39
96 26 0.10
97 31 0.11
98 13 0.05
99 4 0.01
100 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (97 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACACAGATAGATGAGAGCCAGTGTAAGACCTGTC
TGAGACATGGCAGCCACTTTGATGTGCTAGAC
Found at i:30267892 original size:40 final size:40
Alignment explanation
Indices: 30267684--30267885 Score: 316
Period size: 40 Copynumber: 5.1 Consensus size: 40
30267674 CAAGTACCTC
* * *
30267684 CGGGATTTAG-CCGGATATAGCAACTCGCGCAAATGCCTT
1 CGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTT
*
30267723 CGGGACTTAGCCCGGATATAGTAACTCGCACAATTGCCTT
1 CGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTT
*
30267763 CGGGACTTAGCCCGGATATAGTAACTCGCACAATTGCCTT
1 CGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTT
* *
30267803 CGAGACTTAGCCCGGATATAGTAACTCGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTT
* *
30267843 CGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTT
30267883 CGG
1 CGG
30267886 ATCTTAGTTC
Statistics
Matches: 151, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 9 0.06
40 142 0.94
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTT
Found at i:30269335 original size:14 final size:14
Alignment explanation
Indices: 30269313--30269355 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
30269303 TTTCATTTTG
30269313 TAACATAAAATTAT
1 TAACATAAAATTAT
*
30269327 TAGCATAAAA-TAT
1 TAACATAAAATTAT
* *
30269340 TAACACAAAATAAT
1 TAACATAAAATTAT
30269354 TA
1 TA
30269356 TAATATGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30
Consensus pattern (14 bp):
TAACATAAAATTAT
Found at i:30269349 original size:13 final size:13
Alignment explanation
Indices: 30269313--30269351 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
30269303 TTTCATTTTG
30269313 TAACATAAAATTAT
1 TAACATAAAA-TAT
*
30269327 TAGCATAAAATAT
1 TAACATAAAATAT
*
30269340 TAACACAAAATA
1 TAACATAAAATA
30269352 ATTATAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (13 bp):
TAACATAAAATAT
Found at i:30275847 original size:40 final size:40
Alignment explanation
Indices: 30275778--30275942 Score: 235
Period size: 40 Copynumber: 4.2 Consensus size: 40
30275768 AACCCAAGTA
* * *
30275778 CCTTCGAGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
30275817 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
30275857 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
30275897 CCTTCGGGACTTAGCCC-GATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
30275936 CCTTCGG
1 CCTTCGG
30275943 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 37 0.33
40 75 0.67
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:30277389 original size:14 final size:14
Alignment explanation
Indices: 30277367--30277409 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
30277357 TTTCATTTTG
30277367 TAACATAAAATTAT
1 TAACATAAAATTAT
*
30277381 TAGCATAAAA-TAT
1 TAACATAAAATTAT
* *
30277394 TAACACAAAATAAT
1 TAACATAAAATTAT
30277408 TA
1 TA
30277410 TAATATGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30
Consensus pattern (14 bp):
TAACATAAAATTAT
Found at i:30277403 original size:13 final size:13
Alignment explanation
Indices: 30277367--30277405 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
30277357 TTTCATTTTG
30277367 TAACATAAAATTAT
1 TAACATAAAA-TAT
*
30277381 TAGCATAAAATAT
1 TAACATAAAATAT
*
30277394 TAACACAAAATA
1 TAACATAAAATA
30277406 ATTATAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (13 bp):
TAACATAAAATAT
Found at i:30281056 original size:79 final size:81
Alignment explanation
Indices: 30280947--30281129 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
30280937 TACTCGTTCA
* *
30280947 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
30281010 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
30281027 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
30281090 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
30281106 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
30281130 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:30281129 original size:40 final size:40
Alignment explanation
Indices: 30280926--30281129 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
30280916 CGGAATTTAA
** *
30280926 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
30280966 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
30281006 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
30281045 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
30281085 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
30281125 CCGGA
1 CCGGA
30281130 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:30362175 original size:39 final size:39
Alignment explanation
Indices: 30361971--30362193 Score: 232
Period size: 40 Copynumber: 5.6 Consensus size: 39
30361961 TTGAATGCTG
* * * * * *
30361971 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * *
30362011 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
*
30362051 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* **
30362091 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
* *
30362131 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
30362170 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
30362194 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
39 39 0.25
40 109 0.69
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:30362213 original size:79 final size:80
Alignment explanation
Indices: 30362046--30362228 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
30362036 GTGCGAGATA
* * *
30362046 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
30362111 CAGTCGTGCGAGTTG
66 CAGTCGAACGAGGAG
* * * *
30362126 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
* *
30362190 CATTTGAACGAGGAG
66 CAGTCGAACGAGGAG
* *
30362205 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
30362229 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CAGTCGAACGAGGAG
Found at i:30370062 original size:39 final size:39
Alignment explanation
Indices: 30369858--30370080 Score: 232
Period size: 40 Copynumber: 5.6 Consensus size: 39
30369848 TTGAATGCTG
* * * * * *
30369858 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * *
30369898 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
*
30369938 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* **
30369978 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
* *
30370018 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
30370057 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
30370081 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
39 39 0.25
40 109 0.69
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:30370100 original size:79 final size:80
Alignment explanation
Indices: 30369933--30370115 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
30369923 GTGCGAGATA
* * *
30369933 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
30369998 CAGTCGTGCGAGTTG
66 CAGTCGAACGAGGAG
* * * *
30370013 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
* *
30370077 CATTTGAACGAGGAG
66 CAGTCGAACGAGGAG
* *
30370092 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
30370116 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CAGTCGAACGAGGAG
Found at i:30372160 original size:43 final size:43
Alignment explanation
Indices: 30372101--30372209 Score: 130
Period size: 43 Copynumber: 2.5 Consensus size: 43
30372091 ATCGACTCGG
* * *
30372101 TATGTGATTACATGTAAGACCATGTATGGGACATTGGCATTG-
1 TATGTGATTACATGTAAGACCATGTATAGGACAGTGGCATCGA
* * * *
30372143 TATTGTGATTTCGTGTAAGACCCTGTGTAGGACAGTGGCATCGA
1 TA-TGTGATTACATGTAAGACCATGTATAGGACAGTGGCATCGA
*
30372187 TATGTGATAACATGTAAGACCAT
1 TATGTGATTACATGTAAGACCAT
30372210 ATCTAGGATA
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
42 2 0.04
43 50 0.93
44 2 0.04
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (43 bp):
TATGTGATTACATGTAAGACCATGTATAGGACAGTGGCATCGA
Found at i:30372217 original size:43 final size:41
Alignment explanation
Indices: 30372100--30372231 Score: 129
Period size: 43 Copynumber: 3.1 Consensus size: 41
30372090 CATCGACTCG
* *
30372100 GTATGTGATTACATGTAAGACCATGTATGGGACATTGGCATT
1 GTATGTGATTACATGTAAGACCATGTATAGGACA-TGGCATC
* * * *
30372142 GTATTGTGATTTCGTGTAAGACCCTGTGTAGGACAGTGGCATC
1 GTA-TGTGATTACATGTAAGACCATGTATAGGACA-TGGCATC
* * * * *
30372185 GATATGTGATAACATGTAAGACCATATCTAGGATATGGCATT
1 G-TATGTGATTACATGTAAGACCATGTATAGGACATGGCATC
30372227 GTATG
1 GTATG
30372232 AGCTATATGT
Statistics
Matches: 73, Mismatches: 15, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
41 4 0.05
42 10 0.14
43 57 0.78
44 2 0.03
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.33
Consensus pattern (41 bp):
GTATGTGATTACATGTAAGACCATGTATAGGACATGGCATC
Found at i:30374242 original size:30 final size:30
Alignment explanation
Indices: 30374202--30374262 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
30374192 AGTATATAGA
30374202 TAGACAGATAGTTGGAATAAAGAAACTATG
1 TAGACAGATAGTTGGAATAAAGAAACTATG
*
30374232 TAGACGGATAGTTGGAATAAAGAAACTATG
1 TAGACAGATAGTTGGAATAAAGAAACTATG
30374262 T
1 T
30374263 TCTCGAGAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.44, C:0.07, G:0.25, T:0.25
Consensus pattern (30 bp):
TAGACAGATAGTTGGAATAAAGAAACTATG
Found at i:30377443 original size:46 final size:46
Alignment explanation
Indices: 30377376--30377468 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
30377366 GCATGTATAG
*
30377376 GGGCTTTATCTTTTGTAATTATGTCATTA-CAATTGTGGCCAAATGT
1 GGGCTTTATCTTTTGTAATTATGCCATTATCAA-TGTGGCCAAATGT
*
30377422 GGGCTTTATCTTTTGTAATTATGCCATTATTAATGTGGCCAAATGT
1 GGGCTTTATCTTTTGTAATTATGCCATTATCAATGTGGCCAAATGT
30377468 G
1 G
30377469 TTGGCCTATA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
46 42 0.95
47 2 0.05
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.43
Consensus pattern (46 bp):
GGGCTTTATCTTTTGTAATTATGCCATTATCAATGTGGCCAAATGT
Found at i:30384018 original size:45 final size:46
Alignment explanation
Indices: 30383857--30384027 Score: 210
Period size: 45 Copynumber: 3.7 Consensus size: 46
30383847 AACCCGCCCC
* *
30383857 TAAGTGAACTC-GACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
30383902 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
30383950 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
30383995 T-AGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
30384028 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 7, Indels: 20
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 41 0.38
46 20 0.18
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:30384019 original size:92 final size:92
Alignment explanation
Indices: 30383862--30384030 Score: 304
Period size: 92 Copynumber: 1.8 Consensus size: 92
30383852 GCCCCTAAGT
*
30383862 GAACTCGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
30383927 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
30383954 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
1 GAACTC-GACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
30384018 CGAGTTCGGATGC
65 CGAGTTCGGATGC
30384031 TCAACCATCC
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 41 0.55
93 33 0.45
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:30384484 original size:30 final size:30
Alignment explanation
Indices: 30384450--30384509 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
30384440 ATTTAATACG
30384450 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
30384480 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
30384510 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:30384764 original size:20 final size:20
Alignment explanation
Indices: 30384739--30384779 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
30384729 CACAAATTTC
30384739 ACCTATGGGTATTTTTCCAA
1 ACCTATGGGTATTTTTCCAA
30384759 ACCTATGGGTATTTTTCCAA
1 ACCTATGGGTATTTTTCCAA
30384779 A
1 A
30384780 TATAAACCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.39
Consensus pattern (20 bp):
ACCTATGGGTATTTTTCCAA
Found at i:30403489 original size:50 final size:49
Alignment explanation
Indices: 30403365--30403553 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 49
30403355 CGAAGTCGCA
* * * * *
30403365 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACG
* * **
30403416 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* * *
30403466 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * * *
30403515 TTTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
30403554 GCTTTGGCTA
Statistics
Matches: 116, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 40 0.34
50 44 0.38
51 32 0.28
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:30406050 original size:26 final size:26
Alignment explanation
Indices: 30405988--30406056 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 26
30405978 ATGGTCTTCC
* *
30405988 AACCAACTCAAACTTAAGGGTCCTTG
1 AACCAACTCAAACTCAAGGGACCTTG
* * *
30406014 GACCCATTCAAACTCAAGGGACCTCT-
1 AACCAACTCAAACTCAAGGGACCT-TG
*
30406040 AACCAACTCAAAGTCAA
1 AACCAACTCAAACTCAA
30406057 AGGTCCTCAG
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
26 32 0.97
27 1 0.03
ACGTcount: A:0.38, C:0.30, G:0.13, T:0.19
Consensus pattern (26 bp):
AACCAACTCAAACTCAAGGGACCTTG
Found at i:30407638 original size:29 final size:29
Alignment explanation
Indices: 30407606--30407665 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
30407596 ATATTTTCAA
* *
30407606 TTGTAACTATTTAATTTTTAAAGTTACAT
1 TTGTAACTATTAAATTTTTAAAGTTAAAT
* *
30407635 TTGTAATTATTAAATTTTTACAGTTAAAT
1 TTGTAACTATTAAATTTTTAAAGTTAAAT
30407664 TT
1 TT
30407666 ATGGAAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (29 bp):
TTGTAACTATTAAATTTTTAAAGTTAAAT
Found at i:30413555 original size:35 final size:35
Alignment explanation
Indices: 30413484--30413556 Score: 85
Period size: 35 Copynumber: 2.1 Consensus size: 35
30413474 TTTATTTTAA
* **
30413484 TTTACTTTTTTATAATTTTATAAATTTTAATATTT
1 TTTACTTTTTTATAATTTTAAAAATAATAATATTT
* *
30413519 TTTACATTTTTTATAA-TTTAAAAATAATATTTTTT
1 TTTAC-TTTTTTATAATTTTAAAAATAATAATATTT
30413554 TTT
1 TTT
30413557 CGAAAAAACA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
35 22 0.69
36 10 0.31
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (35 bp):
TTTACTTTTTTATAATTTTAAAAATAATAATATTT
Found at i:30414827 original size:46 final size:46
Alignment explanation
Indices: 30414775--30414890 Score: 223
Period size: 46 Copynumber: 2.5 Consensus size: 46
30414765 GATATTTGGG
30414775 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
30414821 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
*
30414867 CGTCCGAACTCGTTGAGTTGAGTC
1 CATCCGAACTCGTTGAGTTGAGTC
30414891 TGGATTTGTG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:30417964 original size:30 final size:28
Alignment explanation
Indices: 30417923--30417978 Score: 85
Period size: 30 Copynumber: 1.9 Consensus size: 28
30417913 ATAGTATCGT
30417923 ATCTCGGATTTCTTTATTCTGGGTTTTCCA
1 ATCTCGGATTTCTTTATTC--GGTTTTCCA
*
30417953 ATCTTGGATTTCTTTATTCGGTTTTC
1 ATCTCGGATTTCTTTATTCGGTTTTC
30417979 TTGTTATCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 7 0.28
30 18 0.72
ACGTcount: A:0.12, C:0.18, G:0.16, T:0.54
Consensus pattern (28 bp):
ATCTCGGATTTCTTTATTCGGTTTTCCA
Found at i:30420306 original size:46 final size:46
Alignment explanation
Indices: 30420239--30420354 Score: 214
Period size: 46 Copynumber: 2.5 Consensus size: 46
30420229 AATATTTGGG
*
30420239 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
30420285 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
*
30420331 CGTCCGAACTCGTTGAGTTGAGTC
1 CATCCGAACTCGTTGAGTTGAGTC
30420355 TGGATTTGTG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:30424933 original size:69 final size:69
Alignment explanation
Indices: 30424790--30425099 Score: 268
Period size: 69 Copynumber: 4.5 Consensus size: 69
30424780 CTTCGTTTGC
* * * * * *
30424790 GAGCCTTAATCTTACAGTTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGG-T-TGTAGCT-TTT
1 GAGCCTTGATCTTACAGTTGGGAGCTTTGCTCTCGCTAACTATTTTGGAGGCTACG-A-CTCTTC
**
30424852 TGCT-T
64 ACCTAT
* * *
30424857 GCAAGCCTTGATCTTACAATTGAGAGCTTTACTCTCGCTAACTATTTTGGAGGCTACGACTCTTC
1 G--AGCCTTGATCTTACAGTTGGGAGCTTTGCTCTCGCTAACTATTTTGGAGGCTACGACTCTTC
*
30424922 GCCTAT
64 ACCTAT
* * * * * * *
30424928 GAGCCTTGGTCTTACAGTTGGGATCTTTGCTCTTGCTAACTTTTTTGGAGGCTACAACTCTTAAA
1 GAGCCTTGATCTTACAGTTGGGAGCTTTGCTCTCGCTAACTATTTTGGAGGCTACGACTCTTCAC
30424993 CTAT
66 CTAT
* * * * * *
30424997 AAGCCTTGATATTATAGCTGGGAGTTTTGCTCTTGCTAACTATTTTGGAGGCTACGACTCTTCAC
1 GAGCCTTGATCTTACAGTTGGGAGCTTTGCTCTCGCTAACTATTTTGGAGGCTACGACTCTTCAC
* **
30425062 TTGC
66 CTAT
* * **
30425066 GAGCCTTGATATTACAATTGAAAGCTTTGCTCTC
1 GAGCCTTGATCTTACAGTTGGGAGCTTTGCTCTC
30425100 CTACAAGCCT
Statistics
Matches: 195, Mismatches: 42, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
67 1 0.01
69 185 0.95
70 6 0.03
71 3 0.02
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (69 bp):
GAGCCTTGATCTTACAGTTGGGAGCTTTGCTCTCGCTAACTATTTTGGAGGCTACGACTCTTCAC
CTAT
Found at i:30430516 original size:4 final size:4
Alignment explanation
Indices: 30430507--30430619 Score: 84
Period size: 4 Copynumber: 28.5 Consensus size: 4
30430497 CGTGGTTCGT
* * * * *
30430507 TATA TATA TAT- TATG TAGA TATA TGTA TGTA TATA TACA TATA TATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * ** * * * *
30430554 TGTA TGTA TATA TATA CCTA TATA CATA CATA TATC TATA TACA TATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* *
30430602 TATA TGTA TATA TCTA TA
1 TATA TATA TATA TATA TA
30430620 ACCAGCAACC
Statistics
Matches: 85, Mismatches: 23, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
3 3 0.04
4 82 0.96
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.45
Consensus pattern (4 bp):
TATA
Found at i:30430556 original size:24 final size:24
Alignment explanation
Indices: 30430507--30430619 Score: 100
Period size: 24 Copynumber: 4.5 Consensus size: 24
30430497 CGTGGTTCGT
** *
30430507 TATATATATATTATGTAGATATATG
1 TATATATATA-TACATATATATATG
*
30430532 TATGTATATATACATATATATATG
1 TATATATATATACATATATATATG
* **
30430556 TATGTATATATATACCTATATACATACA
1 TA--TATATATATA-C-ATATATATATG
*
30430584 TATATCTATATACATATATATATG
1 TATATATATATACATATATATATG
*
30430608 TATATATCTATA
1 TATATATATATA
30430620 ACCAGCAACC
Statistics
Matches: 70, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
24 31 0.44
25 10 0.14
26 18 0.26
27 1 0.01
28 10 0.14
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.45
Consensus pattern (24 bp):
TATATATATATACATATATATATG
Found at i:30430619 original size:18 final size:18
Alignment explanation
Indices: 30430508--30430613 Score: 101
Period size: 18 Copynumber: 5.9 Consensus size: 18
30430498 GTGGTTCGTT
* *
30430508 ATATATATAT-TATGTAG
1 ATATATATATGTATATAC
*
30430525 ATATATGTATGTATATATAC
1 ATATATATATG--TATATAC
*
30430545 ATATATATATGTATGT--
1 ATATATATATGTATATAC
**
30430561 ATATATATACCTATATAC
1 ATATATATATGTATATAC
* *
30430579 ATACATATATCTATATAC
1 ATATATATATGTATATAC
30430597 ATATATATATGTATATA
1 ATATATATATGTATATA
30430614 TCTATAACCA
Statistics
Matches: 72, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
16 13 0.18
17 9 0.12
18 35 0.49
20 15 0.21
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.44
Consensus pattern (18 bp):
ATATATATATGTATATAC
Found at i:30432034 original size:20 final size:19
Alignment explanation
Indices: 30431945--30432046 Score: 109
Period size: 19 Copynumber: 5.3 Consensus size: 19
30431935 TTAGAATTTT
*
30431945 TTTTAAAAATAAATTTTGAAA
1 TTTTAAAAAT-TATTTTG-AA
*
30431966 TTTTTATAAA-TATTTTGAA
1 -TTTTAAAAATTATTTTGAA
* *
30431985 TATTAAAAATTATTTTCAA
1 TTTTAAAAATTATTTTGAA
30432004 TTTTAAAAATTATTTTGAA
1 TTTTAAAAATTATTTTGAA
*
30432023 TTTTAGAAAATTACTTTG-A
1 TTTTA-AAAATTATTTTGAA
30432042 TTTTA
1 TTTTA
30432047 TTTTGTAATT
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
18 7 0.10
19 38 0.54
20 17 0.24
22 8 0.11
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (19 bp):
TTTTAAAAATTATTTTGAA
Found at i:30445434 original size:19 final size:17
Alignment explanation
Indices: 30445397--30445439 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
30445387 GTGGTATTAT
* *
30445397 CATAATTCAATTCATAA
1 CATAAATCAATTCAAAA
30445414 CATCAAATCAAGTTCAAAA
1 CAT-AAATCAA-TTCAAAA
30445433 CATAAAT
1 CATAAAT
30445440 GCACAAGTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 10 0.45
19 9 0.41
ACGTcount: A:0.51, C:0.19, G:0.02, T:0.28
Consensus pattern (17 bp):
CATAAATCAATTCAAAA
Found at i:30449538 original size:55 final size:55
Alignment explanation
Indices: 30449427--30449566 Score: 149
Period size: 55 Copynumber: 2.5 Consensus size: 55
30449417 GACATGGCCG
* * * * * **
30449427 TGGGCGAACCTGCCAAAATAGCACGGGCGTGCGATACGCCCGTGCCTTGAACCCA
1 TGGGCGAACCTGTCAAATTAACACGGGCATGCGACACGCCCGTGCCAAGAACCCA
*
30449482 T-GGCTGAACCTGTCAAATTAACACGGGCATGCGACACGCCTGTGCCAAGCAA-CCA
1 TGGGC-GAACCTGTCAAATTAACACGGGCATGCGACACGCCCGTGCCAAG-AACCCA
* * *
30449537 TGGGCAAACCTGTTAAATTAACGCGGGCAT
1 TGGGCGAACCTGTCAAATTAACACGGGCAT
30449567 AGGCCTACAT
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
54 3 0.04
55 63 0.89
56 5 0.07
ACGTcount: A:0.27, C:0.29, G:0.26, T:0.17
Consensus pattern (55 bp):
TGGGCGAACCTGTCAAATTAACACGGGCATGCGACACGCCCGTGCCAAGAACCCA
Found at i:30462538 original size:29 final size:31
Alignment explanation
Indices: 30462487--30462559 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 31
30462477 CACACACATA
* * *
30462487 ATATATTATATGTATAACCA-CCC-ATGCCT
1 ATATATTATATATATAACAACCCCTATACCT
*
30462516 ATATATTATATATA-ATACAACCCCTATACGT
1 ATATATTATATATATA-ACAACCCCTATACCT
30462547 ATATATTATATAT
1 ATATATTATATAT
30462560 TATATGAAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 1 0.03
29 16 0.43
30 3 0.08
31 17 0.46
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (31 bp):
ATATATTATATATATAACAACCCCTATACCT
Found at i:30470203 original size:18 final size:18
Alignment explanation
Indices: 30470180--30470233 Score: 108
Period size: 18 Copynumber: 3.0 Consensus size: 18
30470170 TGAATAGGGG
30470180 AATCCGAATTCATTCTGA
1 AATCCGAATTCATTCTGA
30470198 AATCCGAATTCATTCTGA
1 AATCCGAATTCATTCTGA
30470216 AATCCGAATTCATTCTGA
1 AATCCGAATTCATTCTGA
30470234 CTCTGTCTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (18 bp):
AATCCGAATTCATTCTGA
Found at i:30474087 original size:17 final size:17
Alignment explanation
Indices: 30474065--30474098 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
30474055 AGTTGGTTTA
30474065 CCAAAGTTAATTTCTTC
1 CCAAAGTTAATTTCTTC
30474082 CCAAAGTTAATTTCTTC
1 CCAAAGTTAATTTCTTC
30474099 TCTCATTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.41
Consensus pattern (17 bp):
CCAAAGTTAATTTCTTC
Found at i:30475280 original size:43 final size:43
Alignment explanation
Indices: 30475167--30475283 Score: 155
Period size: 43 Copynumber: 2.7 Consensus size: 43
30475157 GTTCAACTCG
* * **
30475167 GGATTACCCTTATGGGCTAAATCCTTTATATACTGAAATCAAT
1 GGATTACCCTTCTGGGCTAAATCCATTCCATACTGAAATCAAT
* *
30475210 GGATTACCCTTCCGGGCTAAATCCATTCCATACTGAGATCAAT
1 GGATTACCCTTCTGGGCTAAATCCATTCCATACTGAAATCAAT
*
30475253 GGATTA-CCTGTTTGGGCTAAATCCATTCCAT
1 GGATTACCCT-TCTGGGCTAAATCCATTCCAT
30475284 CACATTCACT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
42 3 0.05
43 62 0.95
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.32
Consensus pattern (43 bp):
GGATTACCCTTCTGGGCTAAATCCATTCCATACTGAAATCAAT
Found at i:30475299 original size:146 final size:144
Alignment explanation
Indices: 30475034--30475319 Score: 362
Period size: 146 Copynumber: 2.0 Consensus size: 144
30475024 TTACCCATCC
* ** *
30475034 GGGCTAAATCCTTTATATACAGAGATTGATGGATTACCCGTCCCAGGCTAAATCCTTTACAATAT
1 GGGCTAAATCCTTTATATACAGAAATCAATGGATTACCCGTCCCAGGCTAAATCCATTACAATAT
* * *
30475099 AAACCAATGGATTACCCATTTGGGCTAAATCCATTCTATCATATTTATTCGAGAGGAAGTTCAAC
66 AAACCAATGGATTACCCATTTGGGCTAAATCCATTCCATCACATTCATTCGAGA-G-AGTTCAAC
30475164 TCGGGATTACCCTTAT
129 TCGGGATTACCCTTAT
* * * *
30475180 GGGCTAAATCCTTTATATACTGAAATCAATGGATTACCC-TTCCGGGCTAAATCCATT-CCATAC
1 GGGCTAAATCCTTTATATACAGAAATCAATGGATTACCCGTCCCAGGCTAAATCCATTACAATA-
* * ** *
30475243 TGAGATCAATGGATTACCTGTTTGGGCTAAATCCATTCCATCACATTCACTT-GAGAGAGTTTAA
65 T-AAACCAATGGATTACCCATTTGGGCTAAATCCATTCCATCACATTCA-TTCGAGAGAGTTCAA
30475307 CTCGGGATTACCC
128 CTCGGGATTACCC
30475320 ATCCAGGCTA
Statistics
Matches: 121, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
144 23 0.19
145 17 0.14
146 79 0.65
147 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (144 bp):
GGGCTAAATCCTTTATATACAGAAATCAATGGATTACCCGTCCCAGGCTAAATCCATTACAATAT
AAACCAATGGATTACCCATTTGGGCTAAATCCATTCCATCACATTCATTCGAGAGAGTTCAACTC
GGGATTACCCTTAT
Found at i:30481377 original size:16 final size:17
Alignment explanation
Indices: 30481347--30481379 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
30481337 TCACACCATG
*
30481347 AATTTCACAAGTGAATT
1 AATTTCACAAATGAATT
30481364 AATTT-ACAAATGAATT
1 AATTTCACAAATGAATT
30481380 CAGAATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36
Consensus pattern (17 bp):
AATTTCACAAATGAATT
Found at i:30484552 original size:18 final size:18
Alignment explanation
Indices: 30484531--30484571 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
30484521 TCTTTACTTT
30484531 CCTCCAAAACTTTTATTC
1 CCTCCAAAACTTTTATTC
*
30484549 CCTCTAAAACTTTTATTC
1 CCTCCAAAACTTTTATTC
30484567 CCTCC
1 CCTCC
30484572 CACATTTCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.37, G:0.00, T:0.39
Consensus pattern (18 bp):
CCTCCAAAACTTTTATTC
Found at i:30484675 original size:19 final size:19
Alignment explanation
Indices: 30484653--30484708 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 19
30484643 TTTTTTTTTA
30484653 CTCCACCCATTTATTTTCC
1 CTCCACCCATTTATTTTCC
* *
30484672 CTCCA---A--AATTTT-A
1 CTCCACCCATTTATTTTCC
30484685 CTCCACCCATTTATTTTCC
1 CTCCACCCATTTATTTTCC
30484704 CTCCA
1 CTCCA
30484709 AAATTTTACT
Statistics
Matches: 27, Mismatches: 4, Indels: 12
0.63 0.09 0.28
Matches are distributed among these distances:
13 5 0.19
14 5 0.19
16 2 0.07
18 5 0.19
19 10 0.37
ACGTcount: A:0.21, C:0.39, G:0.00, T:0.39
Consensus pattern (19 bp):
CTCCACCCATTTATTTTCC
Found at i:30484685 original size:32 final size:32
Alignment explanation
Indices: 30484648--30484718 Score: 142
Period size: 32 Copynumber: 2.2 Consensus size: 32
30484638 CCTAATTTTT
30484648 TTTTACTCCACCCATTTATTTTCCCTCCAAAA
1 TTTTACTCCACCCATTTATTTTCCCTCCAAAA
30484680 TTTTACTCCACCCATTTATTTTCCCTCCAAAA
1 TTTTACTCCACCCATTTATTTTCCCTCCAAAA
30484712 TTTTACT
1 TTTTACT
30484719 TCCTTAACCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (32 bp):
TTTTACTCCACCCATTTATTTTCCCTCCAAAA
Found at i:30494093 original size:40 final size:40
Alignment explanation
Indices: 30494056--30494280 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
30494046 GCTACTCGTT
* * *
30494056 CAAATGCCTTCGGGTCATATCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
30494096 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
30494136 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
30494176 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
30494215 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
30494256 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
30494281 CATCATTCGA
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 115 0.71
41 13 0.08
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:30494240 original size:119 final size:120
Alignment explanation
Indices: 30494058--30494280 Score: 285
Period size: 119 Copynumber: 1.9 Consensus size: 120
30494048 TACTCGTTCA
* *
30494058 AATGCCTTCGGGTCATATCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGTCATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
30494123 TTAGT-AGC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTCA-CTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
30494178 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGTCATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
30494240 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
30494281 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
118 4 0.04
119 64 0.72
120 21 0.24
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGTCATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:30495474 original size:56 final size:56
Alignment explanation
Indices: 30495407--30495526 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
30495397 TATTAGTTTA
30495407 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
30495463 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
30495519 TTGCCCAT
1 TTGCCCAT
30495527 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:30497680 original size:13 final size:13
Alignment explanation
Indices: 30497662--30497686 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30497652 GAAAGAGATT
30497662 TTGATGATTTTTC
1 TTGATGATTTTTC
30497675 TTGATGATTTTT
1 TTGATGATTTTT
30497687 GCACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:30498493 original size:48 final size:47
Alignment explanation
Indices: 30498389--30498805 Score: 176
Period size: 46 Copynumber: 8.8 Consensus size: 47
30498379 TCATTTGTGT
*
30498389 GCTAGTGTAAGA-CATGTCT-AGGACAT-GCATTGGCCACATT-ATGAGAGA
1 GCTAGTGTAAGACCATGTCTGA-GACATGGCATCGG---CATTGA-GAGAGA
30498437 -C-AGTGTAAGACCATGTCTGAGACATGGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGAGACATGGCATCGGCATTGAGA-GAGA
* * **
30498483 GCTAGTGTAAGA-CATGTGT-AGGACAT-GCATCGGCCTCAAGAG-GTAA
1 GCTAGTGTAAGACCATGTCTGA-GACATGGCATCGGCATTGAGAGAG--A
* * * * *
30498529 GCCAGTGTAAGA-CATGTTTGGGACAT-GCATCTGC--T-ACGAGATGT
1 GCTAGTGTAAGACCATGTCTGAGACATGGCATCGGCATTGA-GAGA-GA
* * *
30498573 G-TCAGTGTAAGACCATGT-TCAGGACATGGCATCTGCACATAT-AGAG-GT
1 GCT-AGTGTAAGACCATGTCTGA-GACATGGCATC-G-GCAT-TGAGAGAGA
* * * * * *
30498621 GTTAGTGTAAGACAATGTCTGGGACATGGCATCGGCACGGATGTGCGAGA
1 GCTAGTGTAAGACCATGTCTGAGACATGGCATCGGCA---TTGAGAGAGA
* * * * ** *
30498671 GCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTTGATA
1 GCTAGTGTAAGACCATGTCTGAGACATGGCATCGGCATTGA--GAGAGA
* * * *
30498720 G-TCAGTGTAAGGCCATGTTTGGGACATGGCATCGAC-TTGATG-GACGA
1 GCT-AGTGTAAGACCATGTCTGAGACATGGCATCGGCATTGA-GAGA-GA
* *
30498767 GCCAGTGTAAGACCATGTCTGAGATATGGCATCGGCATT
1 GCTAGTGTAAGACCATGTCTGAGACATGGCATCGGCATT
30498806 ATACCCTATG
Statistics
Matches: 286, Mismatches: 47, Indels: 72
0.71 0.12 0.18
Matches are distributed among these distances:
43 1 0.00
44 15 0.05
45 17 0.06
46 67 0.23
47 58 0.20
48 52 0.18
49 37 0.13
50 37 0.13
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGAGACATGGCATCGGCATTGAGAGAGA
Found at i:30505535 original size:13 final size:13
Alignment explanation
Indices: 30505517--30505541 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30505507 TACAAGTGTT
30505517 TTGATGATTTTTC
1 TTGATGATTTTTC
30505530 TTGATGATTTTT
1 TTGATGATTTTT
30505542 GCACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:30506395 original size:46 final size:46
Alignment explanation
Indices: 30506249--30506559 Score: 208
Period size: 46 Copynumber: 6.6 Consensus size: 46
30506239 TTTGTGCGCT
* * * *
30506249 AGTGTAAGACATGTCTGGGAAATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGAGAGCC
* * * *
30506295 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGAGAGCC
* *
30506343 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGAGGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-AGAGCC
* * **
30506389 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGA--TGTGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGAGAGCC
* * * * *
30506433 AGTGTAAGACCATGTTTGGGACATGGCATCGACAC-GGATGTGCGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCGA-G-ACGAGAGCC
* * * *
30506483 TGTGTAAGACCATGTCTGGGACATGGCAT-TGACTTGATG--GATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GACGA-GAGCC
30506530 AGTGTAAGACCATGTCTGGGACATGTCATC
1 AGTGTAAGA-CATGTCTGGGACATG-CATC
30506560 TGCATTATAC
Statistics
Matches: 213, Mismatches: 34, Indels: 34
0.76 0.12 0.12
Matches are distributed among these distances:
44 10 0.05
45 15 0.07
46 70 0.33
47 58 0.27
48 25 0.12
49 5 0.02
50 30 0.14
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGAGCC
Found at i:30512923 original size:85 final size:85
Alignment explanation
Indices: 30512780--30512958 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
30512770 GGCCGGCCAT
30512780 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
30512845 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
30512865 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
30512930 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
30512950 GAGCATGGG
1 GAGCATGGG
30512959 CAATAAAATA
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:30514230 original size:39 final size:40
Alignment explanation
Indices: 30514130--30514314 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
30514120 TCGAATGATG
* * *
30514130 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
30514169 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
30514210 TCCAGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
30514249 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
30514288 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
30514315 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:30514336 original size:79 final size:79
Alignment explanation
Indices: 30514183--30514347 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
30514173 GGACTAAGAT
* **
30514183 CCGAAGGCATTTGTGCGAGTTACTAATTCCAGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
30514248 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
30514262 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
30514325 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
30514341 CCGAAGG
1 CCGAAGG
30514348 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:30519528 original size:79 final size:81
Alignment explanation
Indices: 30519419--30519601 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
30519409 TACTCGTTCA
* *
30519419 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
30519482 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
30519499 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
30519562 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
30519578 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
30519602 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:30519601 original size:40 final size:40
Alignment explanation
Indices: 30519398--30519601 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
30519388 CGGAATTTAA
** *
30519398 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
30519438 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
30519478 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
30519517 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
30519557 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
30519597 CCGGA
1 CCGGA
30519602 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:30520795 original size:56 final size:55
Alignment explanation
Indices: 30520728--30520899 Score: 305
Period size: 56 Copynumber: 3.1 Consensus size: 55
30520718 TATTAGTTTA
30520728 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATT-TTCCATTAACACAACATGTTTCATGACATGTT
30520784 TTGCCCATGCTTCTTA-TTTA--TTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTCCATTAACACAACATGTTTCATGACATGTT
30520836 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTA-TTTTCCATTAACACAACATGTTTCATGACATGTT
30520892 TTGCCCAT
1 TTGCCCAT
30520900 CATCCCTTGT
Statistics
Matches: 112, Mismatches: 0, Indels: 8
0.93 0.00 0.07
Matches are distributed among these distances:
52 48 0.43
53 4 0.04
55 4 0.04
56 56 0.50
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.44
Consensus pattern (55 bp):
TTGCCCATGCTTCTTATTTTATTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:30527462 original size:78 final size:79
Alignment explanation
Indices: 30527363--30527507 Score: 229
Period size: 78 Copynumber: 1.8 Consensus size: 79
30527353 CCTCGTTCAA
* * *
30527363 ATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGATT
1 ATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGGACATAACCCGGATT
30527427 TAACAACTCGCACG
66 TAACAACTCGCACG
* * *
30527441 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATT
1 ATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGGACATAACCCGGATT
30527506 TA
66 TA
30527508 GTATCTCGCA
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
78 33 0.55
79 27 0.45
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
ATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGGACATAACCCGGATT
TAACAACTCGCACG
Found at i:30527496 original size:40 final size:39
Alignment explanation
Indices: 30527362--30527583 Score: 239
Period size: 40 Copynumber: 5.6 Consensus size: 39
30527352 TCCTCGTTCA
* * * * *
30527362 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
30527401 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
30527440 GATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
30527479 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * * * *
30527519 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
30527560 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
30527584 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 73 0.46
40 76 0.48
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:30531715 original size:47 final size:48
Alignment explanation
Indices: 30531586--30531724 Score: 199
Period size: 48 Copynumber: 2.9 Consensus size: 48
30531576 TACCACAGTT
* * *
30531586 ATACCTGTAACGTGGTGCTAAGTGGATATACCAAGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* *
30531634 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* * *
30531682 ATTCAT-TAACGTGGAGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACAT
30531725 GTAACATGGT
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 33 0.41
48 48 0.59
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.29
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
Found at i:30531764 original size:38 final size:38
Alignment explanation
Indices: 30531682--30531764 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 38
30531672 ACATATATTG
*
30531682 ATTCAT-TAACGTGGAGCTAAGTGGATATACCACGGTT
1 ATTCATGTAACATGGAGCTAAGTGGATATACCACGGTT
** * *
30531719 AAACATGTAACATGGTGCTAAGTGGATATGCCACGGTT
1 ATTCATGTAACATGGAGCTAAGTGGATATACCACGGTT
30531757 ATTCATGT
1 ATTCATGT
30531765 TAATTTGAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
37 4 0.11
38 34 0.89
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (38 bp):
ATTCATGTAACATGGAGCTAAGTGGATATACCACGGTT
Done.