Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1043
Parameters: 2 7 7 80 10 50 1000
Length:  47335

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1486--1776
40
7.6
40
83
10
288
23
20
29
26
1.99
1565--1666
39
3.0
32
77
20
118
20
21
32
25
1.98
1595--1774
79
2.3
79
90
1
272
23
21
29
26
1.99
1630--1811
79
2.3
80
82
1
215
25
20
28
25
1.99
9440--9741
40
7.6
40
89
2
387
24
20
28
26
1.99
9440--9741
119
2.5
119
86
3
392
24
20
28
26
1.99
16877--16996
56
2.1
56
93
0
204
43
9
25
22
1.82
18443--19133
47
14.6
46
91
2
941
33
9
29
27
1.89
18984--19105
22
5.3
22
62
21
61
33
11
29
25
1.91
23416--23522
6
20.2
5
80
14
103
75
0
2
20
0.98
23414--23521
20
5.0
21
79
14
100
74
1
2
21
1.05
25014--25053
20
2.1
19
86
9
55
10
20
52
17
1.72
25698--25761
18
3.6
18
80
0
74
39
17
9
34
1.82
25685--25980
36
8.0
36
71
11
161
36
16
12
35
1.86
25778--25968
18
10.6
18
75
10
167
36
16
12
35
1.86
25779--25980
72
2.8
71
78
8
203
36
15
12
35
1.86
26097--26204
48
2.3
47
93
1
180
41
23
19
15
1.89
26192--26219
6
4.7
6
100
0
56
53
17
14
14
1.73
26393--26440
19
2.5
20
79
3
62
33
4
0
62
1.14
31544--31613
33
2.2
33
82
7
81
27
22
24
25
2.00
34963--35140
27
6.6
26
80
6
169
26
15
28
29
1.96
34964--35119
82
1.9
81
85
3
215
26
16
28
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34960--35140
82
2.2
81
81
2
211
27
16
27
29
1.97
35045--35151
27
3.9
27
83
1
79
26
15
28
29
1.96
42913--43056
27
5.6
26
75
11
109
27
16
28
27
1.97
43001--43071
25
2.8
25
80
4
81
26
15
29
28
1.96

Tables:   1

The End!