Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2246
Parameters: 2 7 7 80 10 50 1000
Length:  68714

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1171--1217
25
1.9
25
91
4
78
76
0
17
6
0.98
2435--2617
39
4.7
39
88
0
249
24
21
28
26
1.99
2435--2640
78
2.6
78
82
3
218
24
20
28
26
1.99
2437--2652
118
1.8
117
81
8
269
24
20
28
26
1.99
4018--4060
16
2.6
17
78
10
54
6
25
16
51
1.69
10699--10776
38
2.1
38
100
0
156
42
20
10
26
1.84
13621--13729
43
2.6
41
78
8
112
32
27
19
21
1.97
15316--15358
18
2.4
18
88
0
59
9
13
6
69
1.35
16021--16063
15
2.8
15
89
3
59
74
0
2
23
0.93
16021--16069
4
12.2
4
76
23
50
73
0
4
22
1.00
17332--17371
21
1.9
21
89
0
62
57
0
12
30
1.36
17379--17419
21
2.0
21
85
0
55
41
9
12
36
1.76
17493--17521
14
2.1
14
100
0
58
51
13
0
34
1.42
19087--19123
14
2.6
14
100
0
74
32
24
5
37
1.78
23088--23127
14
2.9
13
88
3
53
17
2
2
77
0.99
23134--23170
11
3.4
11
88
0
56
24
0
0
75
0.80
23136--23170
16
2.2
16
89
0
52
22
0
0
77
0.78
31392--31482
29
3.2
29
87
1
130
28
29
15
26
1.96
31716--31778
16
3.9
16
89
0
81
11
23
22
42
1.85
31716--31775
24
2.5
24
86
0
66
11
23
20
45
1.83
31724--31778
8
6.9
8
89
0
83
10
23
23
41
1.86
33244--33363
46
2.6
47
86
2
161
25
23
15
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40608--40723
50
2.4
47
84
5
144
27
22
14
35
1.93
43094--43127
16
2.1
16
100
0
68
23
5
26
44
1.76
43233--43381
43
3.5
43
72
9
117
27
20
24
26
1.99
44930--45059
66
1.9
67
84
10
174
33
16
30
20
1.94
51004--51744
369
2.0
370
98
0
1430
32
12
23
31
1.91
52786--52915
66
1.9
67
83
10
165
33
16
30
20
1.94
56531--56662
43
3.1
43
85
8
139
21
28
19
30
1.98
56556--56679
43
2.9
43
87
3
162
20
29
21
27
1.98
62253--62498
40
6.2
40
91
1
388
28
26
22
23
1.99

Tables:   1

The End!