Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold548
Parameters: 2 7 7 80 10 50 1000
Length:  37359

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
750--1105
40
8.9
40
89
1
518
25
21
27
25
1.99
750--1105
159
2.2
160
91
0
579
25
21
27
25
1.99
4500--4696
47
4.1
47
82
7
241
31
11
30
26
1.92
4670--4760
46
2.0
46
84
0
119
32
9
31
25
1.89
4905--5048
74
2.0
73
91
1
234
24
18
31
26
1.97
4905--5031
37
3.5
37
97
1
238
23
19
32
24
1.98
8498--8542
23
1.9
23
86
4
63
62
2
11
24
1.40
11685--12180
47
10.6
47
94
1
834
32
8
29
29
1.87
11685--12180
189
2.6
187
93
1
832
32
8
29
29
1.87
14316--14390
38
2.0
38
86
5
107
30
18
26
24
1.98
14448--14803
40
8.9
40
90
0
534
24
21
27
25
1.99
18038--18539
47
10.6
47
92
2
779
33
8
28
29
1.86
18152--18227
22
3.3
22
64
10
62
32
10
27
28
1.90
18038--18539
143
3.5
143
93
1
828
33
8
28
29
1.86
20502--20610
37
2.9
37
95
0
191
26
31
19
22
1.98
20760--20892
50
2.7
48
93
4
214
30
25
7
36
1.84
20760--20904
48
3.0
48
91
5
222
29
24
8
37
1.85
20815--21007
47
4.1
47
85
4
198
27
28
10
33
1.90
24787--24819
17
2.0
17
88
5
50
63
6
0
30
1.18
25851--25947
29
3.3
29
94
2
169
29
24
17
27
1.97
26201--26243
16
2.7
16
85
0
50
11
18
16
53
1.72
29963--30308
47
7.3
47
92
3
500
32
9
30
27
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30159--30280
22
5.3
22
62
21
61
33
11
29
25
1.91
32733--32807
38
2.0
38
86
5
107
30
18
26
24
1.98
32861--33224
40
9.1
40
90
0
541
24
21
28
25
1.99
36722--36843
22
5.3
22
62
21
61
33
11
29
25
1.91
36627--36871
47
5.2
47
92
2
370
32
9
31
26
1.88

Tables:   1

The End!