Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1023
Parameters: 2 7 7 80 10 50 1000
Length:  65645

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7434--7474
1
41.0
1
92
0
55
4
0
2
92
0.44
7625--7653
9
3.0
10
90
10
51
10
0
0
89
0.48
7627--7652
9
2.9
9
100
0
52
7
0
0
92
0.39
15021--15068
15
3.3
15
73
5
53
29
0
27
43
1.55
15015--15074
29
2.1
29
93
0
102
28
0
30
41
1.56
15015--15058
14
3.1
14
74
6
52
27
0
34
38
1.57
16051--16095
14
3.3
14
78
6
56
48
15
0
35
1.45
16591--16649
14
4.2
14
76
8
57
22
33
6
37
1.80
16945--17029
30
2.8
30
77
10
93
14
25
0
60
1.35
17109--17172
5
12.6
5
74
21
53
3
15
3
78
1.01
17109--17172
15
4.2
15
75
16
60
3
15
3
78
1.01
17108--17176
20
3.3
21
76
12
79
2
17
2
76
1.03
18238--18274
14
2.5
15
91
8
58
8
16
0
75
1.02
19505--19601
30
3.2
30
73
2
88
28
27
14
28
1.95
26046--26095
13
3.5
14
81
10
57
74
6
6
14
1.21
26058--26095
17
2.4
16
83
12
51
73
5
7
13
1.22
27009--27052
6
8.2
6
83
16
53
81
0
18
0
0.68
27009--27065
15
3.7
15
88
6
71
78
0
19
1
0.83
27009--27065
21
2.7
21
86
8
71
78
0
19
1
0.83
27113--27143
12
2.6
12
100
0
62
45
12
16
25
1.83
27146--27170
12
2.1
12
100
0
50
76
0
16
8
1.02
27146--27224
30
2.7
30
77
14
85
64
1
21
12
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31040--31136
30
3.2
30
73
2
97
27
28
14
28
1.95
32482--32578
30
3.2
30
71
8
90
27
15
28
27
1.96
39647--39688
19
2.2
19
83
8
50
21
2
2
73
1.06
39636--39697
23
2.6
24
71
19
58
25
1
6
66
1.25
41192--41258
20
3.3
20
64
12
55
22
14
32
29
1.94
41191--41280
41
2.2
41
95
0
162
25
13
32
28
1.93
53221--53308
30
2.9
30
78
9
90
28
17
25
29
1.97
54772--54800
12
2.3
13
94
5
51
75
0
0
24
0.80

Tables:   1

The End!