Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1165
Parameters: 2 7 7 80 10 50 1000
Length:  59113

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6888--7360
177
2.7
177
86
2
605
28
17
25
29
1.97
6819--7183
132
2.8
132
92
0
595
27
17
23
30
1.97
7108--7529
132
3.2
132
84
3
537
27
16
27
28
1.97
6863--7544
309
2.2
308
88
2
1010
27
17
25
30
1.97
6888--7413
177
3.0
177
84
2
513
28
16
25
29
1.97
7459--7855
46
8.8
46
68
6
195
27
19
23
29
1.98
7494--7922
134
3.2
134
93
1
700
27
19
23
29
1.98
9626--9685
22
2.8
21
87
5
68
38
11
1
48
1.50
9636--9686
22
2.3
22
93
0
84
39
13
0
47
1.43
16358--16500
74
1.9
74
89
2
223
32
19
22
25
1.97
16356--16829
168
2.8
167
90
2
711
30
19
20
29
1.97
16504--16910
77
5.1
76
73
15
256
29
18
19
31
1.96
16582--16770
91
2.1
91
82
4
220
26
20
18
34
1.96
16904--16939
14
2.7
13
86
4
54
30
13
5
50
1.65
16941--16989
24
2.0
24
100
0
98
32
16
24
26
1.96
17061--17117
30
1.9
30
89
7
89
21
8
24
45
1.80
18251--18289
17
2.3
17
86
8
53
17
10
0
71
1.12
18342--18370
13
2.2
13
100
0
58
68
0
0
31
0.89
18342--18394
15
3.9
14
80
20
51
71
3
0
24
1.02
18479--18513
11
3.2
11
88
11
54
0
54
0
45
0.99
19041--19083
11
3.9
11
81
0
50
34
0
4
60
1.17
20263--20287
9
2.8
9
100
0
50
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20446--20505
28
2.1
28
81
6
68
33
6
3
56
1.42
21370--21409
15
2.6
16
84
11
57
62
0
0
37
0.95
27433--27474
18
2.3
18
80
8
50
66
4
7
21
1.35
29522--29559
17
2.2
17
95
0
67
34
7
31
26
1.85
29784--29831
24
2.0
23
84
8
60
39
0
2
58
1.10
29792--29838
24
2.0
24
83
8
60
42
0
2
55
1.12
31322--31366
18
2.4
18
85
10
56
40
6
4
48
1.49
31380--31445
32
2.0
35
82
14
86
42
4
6
46
1.48
32712--32780
16
4.2
16
94
3
120
26
0
36
37
1.57
32712--32780
33
2.1
32
94
2
120
26
0
36
37
1.57
33016--33052
19
2.0
19
85
15
51
54
0
0
45
1.00
48630--48669
20
2.0
21
90
5
64
67
12
5
15
1.38
51487--51536
15
3.4
16
73
18
54
64
2
6
28
1.28
52775--53398
133
4.7
132
88
1
816
27
22
20
29
1.98

Tables:   1

The End!