Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1253
Parameters: 2 7 7 80 10 50 1000
Length:  56562

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2054--2090
18
2.0
19
89
5
58
45
18
21
13
1.84
4443--4503
31
2.0
31
86
0
86
36
21
24
18
1.95
5158--5203
23
2.0
23
86
0
65
30
23
21
23
1.99
5253--5328
23
3.2
24
89
10
122
25
22
14
38
1.92
12732--12878
27
5.5
26
85
1
150
25
20
17
36
1.94
12737--12878
54
2.6
54
87
3
198
26
21
16
36
1.94
17403--17517
43
2.7
43
73
10
101
32
16
24
26
1.96
17689--17718
15
1.9
16
93
6
53
33
0
26
40
1.57
23799--23877
39
2.0
39
97
0
149
32
13
20
32
1.92
25334--25447
43
2.7
40
77
12
131
32
15
21
29
1.95
25523--25701
89
2.0
89
95
0
322
37
12
21
27
1.90
30357--30389
16
2.1
16
94
0
57
48
30
6
15
1.69
31860--31920
28
2.2
29
82
5
72
32
11
24
31
1.91
31875--31943
29
2.4
29
88
7
97
28
14
27
28
1.95
35402--35506
47
2.2
47
94
0
183
33
8
30
27
1.87
43602--43645
16
2.8
16
92
0
70
50
15
20
13
1.78
43872--43928
29
2.0
29
92
0
96
28
14
28
29
1.95
43869--43952
29
2.9
29
78
0
69
28
16
27
27
1.97
46694--46878
79
2.3
81
83
7
227
24
22
27
24
2.00
46695--46878
40
4.6
40
82
9
207
25
22
27
24
2.00
46747--46911
79
2.1
79
83
6
201
26
21
27
24
1.99
54601--54785
79
2.3
81
83
7
227
24
22
27
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54602--54785
40
4.6
40
82
9
207
25
22
27
24
2.00
54654--54818
79
2.1
79
83
6
201
26
21
27
24
1.99

Tables:   1

The End!