Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2746
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55470
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Found at i:6364 original size:40 final size:40
Alignment explanation
Indices: 6319--6509 Score: 222
Period size: 40 Copynumber: 4.8 Consensus size: 40
6309 TATAACCACA
** *
6319 AGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * *
6359 CGCACAAATGCCTTCGGATCTTAGTCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * * **
6399 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* *
6439 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* *
6479 AGCA-AATTGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATA
6510 TCATTCAAAT
Statistics
Matches: 123, Mismatches: 28, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
39 25 0.20
40 98 0.80
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
Found at i:6439 original size:80 final size:79
Alignment explanation
Indices: 6291--6510 Score: 309
Period size: 80 Copynumber: 2.8 Consensus size: 79
6281 ACCCAAGTTT
* * * * * *
6291 CTTCGGAAT-TTAGCCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGT
1 CTTCGG-ATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGC
6355 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* *
6370 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGC
6435 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* *
6450 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCA-AATTGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
6511 CATTCAAATG
Statistics
Matches: 126, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
78 2 0.02
79 35 0.28
80 89 0.71
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
CTTCGGATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:8627 original size:40 final size:40
Alignment explanation
Indices: 8563--8641 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
8553 TTACGGTACC
* * *
8563 ATTTGGTGTGTAGGGTTGGATGGGTTGATTATATCCCCAT
1 ATTTGGTGTGTAAGGCTGGATGGGTCGATTATATCCCCAT
* *
8603 ATTTGGTGTGTAAGGCTGGGTGGGTCGATTCTATCCCCA
1 ATTTGGTGTGTAAGGCTGGATGGGTCGATTATATCCCCA
8642 CATGGTGTGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.16, C:0.14, G:0.33, T:0.37
Consensus pattern (40 bp):
ATTTGGTGTGTAAGGCTGGATGGGTCGATTATATCCCCAT
Found at i:14510 original size:110 final size:111
Alignment explanation
Indices: 14319--14765 Score: 358
Period size: 117 Copynumber: 3.9 Consensus size: 111
14309 TTGAAAGGTA
* ** *
14319 ATTTTTTT-TTATGTATTTTATTA-AGTTTAAGTTTATATTAAAAGTATGATTTGTGTGTTTTAT
1 ATTTTTTTGTTATG--TTTTATTAGA-TTTAAGTTTATATTAAAGGTATGATTAATTTGTTTTAT
* *
14382 TATTGTTTT-TATGATATCTTATAACAA-TTTTTTATATTGAAAAGAAAT
63 TAATGTTTTGT-TGATATCTTATATCAATTTTTTTATATTGAAAAGAAAT
* * * *
14430 ATTTTTTTATTATGTTTTATTAGATTTAAGTTTATATTAAATGTATGATTAGTTTATTTTATTAA
1 ATTTTTTTGTTATGTTTTATTAGATTTAAGTTTATATTAAAGGTATGATTAATTTGTTTTATTAA
* **
14495 TGTTATTGTTG-TATCTTATATCAACTTTTTTTTTATATTTAAGGGGAAGGAT
66 TGTT-TTGTTGATATCTTATATCAA---TTTTTTTATATTGAA-AAGAA--AT
* * * *
14547 ATCTTTTTGTTGTGTTATT-TTAG-TTTTAGATTTGTATTAAAGGTATGATTAATTTGTTTTATT
1 ATTTTTTTGTTATGTT-TTATTAGATTTAAG-TTTATATTAAAGGTATGATTAATTTGTTTTATT
* * **
14610 AATGTTTT-TGTGATATCTTATATTAATTTTTTGTATTTACTTGAAATGTTAT
64 AATGTTTTGT-TGATATCTTATATCAATTTTTT-TA--TA-TTGAAAAGAAAT
* * * * *
14662 TTTTTTGTTGTTGTGTTTTATTAGCTTTAAGTTTGTA-TAAAGGTTTGATTAATTTGTTTTATTA
1 ATTTTT-TTGTTATGTTTTATTAGATTTAAGTTTATATTAAAGGTATGATTAATTTGTTTTATTA
* * * *
14726 AT-TTTTTTTGAAGAATCTTATATC-AGTTTTTCATATTGAA
65 ATGTTTTGTTG-A-TATCTTATATCAATTTTTTTATATTGAA
14766 GGTATGAGCA
Statistics
Matches: 280, Mismatches: 31, Indels: 50
0.78 0.09 0.14
Matches are distributed among these distances:
110 60 0.21
111 18 0.06
112 8 0.03
114 26 0.09
115 50 0.18
116 38 0.14
117 74 0.26
118 6 0.02
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (111 bp):
ATTTTTTTGTTATGTTTTATTAGATTTAAGTTTATATTAAAGGTATGATTAATTTGTTTTATTAA
TGTTTTGTTGATATCTTATATCAATTTTTTTATATTGAAAAGAAAT
Found at i:14607 original size:117 final size:116
Alignment explanation
Indices: 14336--14767 Score: 334
Period size: 110 Copynumber: 3.8 Consensus size: 116
14326 TTTATGTATT
* * ** * * * *
14336 TTATTAAG-TTTAAGTTTATATTAAAAGTATGATTTGTGTGTTTTATTATTGTTTTTATGATATC
1 TTATT-AGCTTTAAGTTTGTATTAAAGGTATGATTAATTTGTTTTATTAATGTTATTGTGATATC
* * * * * * *
14400 TTATAACAATTTTTTATA-TT----GAAAAGAAATATTTTT-TTATTATGTT
65 TTATATCAATTTTTTATATTTAAGGGAAAGGATATCTTTTTGTTGTTGTGTA
* * * * *
14446 TTATTAGATTTAAGTTTATATTAAATGTATGATTAGTTTATTTTATTAATGTTATTGTTG-TATC
1 TTATTAGCTTTAAGTTTGTATTAAAGGTATGATTAATTTGTTTTATTAATGTTATTG-TGATATC
*
14510 TTATATCAACTTTTTTTTTATATTTAAGGGGAAGGATATCTTTTTGTTG-TGT-TA
65 TTATATCAA----TTTTTTATATTTAAGGGAAAGGATATCTTTTTGTTGTTGTGTA
* *
14564 TT-TTAG-TTTTAGATTTGTATTAAAGGTATGATTAATTTGTTTTATTAATGTTTTTGTGATATC
1 TTATTAGCTTTAAG-TTTGTATTAAAGGTATGATTAATTTGTTTTATTAATGTTATTGTGATATC
* * *** * * * *
14627 TTATATTAATTTTTTGTATTTACTTGAAATGTTATTTTTTTGTTGTTGTGTT
65 TTATATCAATTTTTTATATTTAAGGGAAAGGATATCTTTTTGTTGTTGTGTA
* * * *
14679 TTATTAGCTTTAAGTTTGTA-TAAAGGTTTGATTAATTTGTTTTATTAAT-TTTTTTTGAAGAAT
1 TTATTAGCTTTAAGTTTGTATTAAAGGTATGATTAATTTGTTTTATTAATGTTATTGTG-A-TAT
* * *
14742 CTTATATCAGTTTTTCATATTGAAGG
64 CTTATATCAATTTTTTATATTTAAGG
14768 TATGAGCATA
Statistics
Matches: 259, Mismatches: 43, Indels: 34
0.77 0.13 0.10
Matches are distributed among these distances:
109 2 0.01
110 59 0.23
111 2 0.01
113 28 0.11
114 19 0.07
115 34 0.13
116 37 0.14
117 59 0.23
118 3 0.01
119 14 0.05
120 2 0.01
ACGTcount: A:0.27, C:0.03, G:0.14, T:0.56
Consensus pattern (116 bp):
TTATTAGCTTTAAGTTTGTATTAAAGGTATGATTAATTTGTTTTATTAATGTTATTGTGATATCT
TATATCAATTTTTTATATTTAAGGGAAAGGATATCTTTTTGTTGTTGTGTA
Found at i:18667 original size:40 final size:40
Alignment explanation
Indices: 18573--18797 Score: 240
Period size: 40 Copynumber: 5.6 Consensus size: 40
18563 TATTCGAATG
* *
18573 ATATCCGGGCTAAG-TCCCAAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
18614 ATAACCAGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
18654 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
18694 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
18734 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGGTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
18774 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
18798 CTTGTGCAAG
Statistics
Matches: 156, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 1 0.01
40 126 0.81
41 28 0.18
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:18744 original size:80 final size:80
Alignment explanation
Indices: 18573--18833 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
18563 TATTCGAATG
* * * * * *
18573 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGGTGACTATAACCAGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
18638 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTCGCT
* * * *
18654 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
18719 TTTGTGCTAG-CGACT
66 TTTGTGCGAGTCG-CT
* * * *
18734 ATATCCGGGCTAAGTCCCGAAGGCATTTATGGTAGTGACCACATCCGGGCTAAGACCCGAAGGC-
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * * *
18798 CTTGTGCAAGTAGTT
66 TTTGTGCGAGTCGCT
*
18813 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
18834 ATTTCTTGAG
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 14 0.09
79 16 0.10
80 92 0.60
81 31 0.20
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTCGCT
Found at i:18787 original size:120 final size:120
Alignment explanation
Indices: 18573--18833 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
18563 TATTCGAATG
* * * *
18573 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGGTGACTATAACCAGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGATCCGAAGGC
* * * * *
18638 ATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTTATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * * *
18694 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGAT-CCGAAGG
*
18757 CATTTATG-GTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTTATGCG-AGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
18813 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
18834 ATTTCTTGAG
Statistics
Matches: 121, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
118 15 0.12
119 20 0.17
120 56 0.46
121 30 0.25
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGATCCGAAGGC
ATTTATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:25716 original size:40 final size:40
Alignment explanation
Indices: 25622--25846 Score: 233
Period size: 40 Copynumber: 5.6 Consensus size: 40
25612 TATTCGAATG
* *
25622 ATATCCGGGCTAAG-TCTCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATC-CGAAGGCATTTGTGCTA-GCGACT
* * * * *
25663 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-CGACT
* *
25703 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* *
25743 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* * * *
25783 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGGTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
*
25823 ACATCCGGGCTAAGA-CTCGAAGGC
1 ATATCCGGGCTAAGATC-CGAAGGC
25847 CTTGTGCAAG
Statistics
Matches: 157, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
39 2 0.01
40 125 0.80
41 28 0.18
42 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
Found at i:25802 original size:80 final size:80
Alignment explanation
Indices: 25622--25882 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
25612 TATTCGAATG
* * * * *
25622 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
25687 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
25703 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
25768 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * * *
25783 ATATCCGGGCTAAGTCCCGAAGGCATTTATGGTAGTGACCACATCCGGGCTAAGACTCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
25848 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
25862 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
25883 ATTTCTTGAG
Statistics
Matches: 152, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 93 0.61
81 31 0.20
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:25836 original size:120 final size:120
Alignment explanation
Indices: 25622--25882 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
25612 TATTCGAATG
* * * *
25622 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
25687 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
25743 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
25806 CATTTATG-GTAG-TGACCACATCCGGGCTAAGACTCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCG-AGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
25862 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
25883 ATTTCTTGAG
Statistics
Matches: 120, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
118 15 0.12
119 20 0.17
120 55 0.46
121 30 0.25
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:28048 original size:12 final size:12
Alignment explanation
Indices: 28033--28059 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
28023 CGGCTGCAAG
28033 AGATGAAGAAGA
1 AGATGAAGAAGA
28045 AGATGAAGAAGA
1 AGATGAAGAAGA
28057 AGA
1 AGA
28060 CAAAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.33, T:0.07
Consensus pattern (12 bp):
AGATGAAGAAGA
Found at i:39784 original size:27 final size:27
Alignment explanation
Indices: 39754--39930 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
39744 ATATTGAGTC
* * *
39754 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
39781 CGCACACTTAGTGCTACGTAATCAATCT
1 CGCACACTTAGTGCTACATAGTCAA-CT
* * *
39809 CGCACACTTAGTGCCACATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
** **
39836 CGCACACTTAGTGC-ATCATTTTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
39863 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
*
39890 CGCACACTTAGTGCTGCATAGTCAA-T
1 CGCACACTTAGTGCTACATAGTCAACT
39916 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
39931 GTACAATTTA
Statistics
Matches: 130, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
26 17 0.13
27 89 0.68
28 24 0.18
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Done.