genome.fa.s32.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3028
Parameters: 2 7 7 80 10 50 1000
Length:  91256

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5604--5781	27	6.6	27	85	3	205	29	29	14	26	1.95
5604--5781	54	3.3	54	85	3	232	29	29	14	26	1.95
5625--5780	81	1.9	82	88	3	235	29	29	14	26	1.95
14873--14914	10	4.2	10	82	8	50	57	14	23	4	1.56
17672--17856	79	2.3	82	83	7	229	24	27	23	24	2.00
17653--17856	40	5.1	40	81	8	229	24	27	23	25	2.00
25577--25760	40	4.6	39	83	9	205	25	27	22	24	2.00
25577--25760	78	2.3	82	82	9	229	25	27	22	24	2.00
28251--28458	31	6.7	31	94	0	364	27	25	16	29	1.97
28661--28847	26	7.2	26	86	1	268	27	22	21	27	1.99
28661--28847	52	3.6	52	92	1	313	27	22	21	27	1.99
28897--29003	20	5.3	20	87	2	153	29	18	10	41	1.84
28897--29003	40	2.7	40	89	2	171	29	18	10	41	1.84
29805--30014	27	7.7	27	75	7	158	32	8	19	40	1.82
29918--30054	27	5.1	27	73	11	102	29	10	21	38	1.87
30046--30189	27	5.3	27	84	3	164	39	9	23	27	1.86
30046--30189	54	2.7	54	87	0	198	39	9	23	27	1.86
32437--32608	31	5.5	31	92	0	290	28	23	16	30	1.97
32826--33051	26	8.8	26	84	1	278	28	22	21	28	1.99
32826--33051	77	2.9	78	84	2	296	28	22	21	28	1.99
32826--33052	103	2.2	103	87	3	332	28	22	21	28	1.99
33101--33208	20	5.4	20	87	2	155	28	17	12	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33101--33208	40	2.7	40	91	2	173	28	17	12	41	1.85
33181--33217	18	1.9	19	89	10	58	32	18	10	37	1.86
34740--34915	46	3.8	46	78	11	189	20	19	30	29	1.97
34737--34908	93	1.8	93	91	2	283	20	20	30	28	1.98
41900--41964	27	2.4	27	79	5	69	21	23	18	36	1.95
41922--41973	27	1.9	28	84	7	72	17	21	23	38	1.93
42015--42196	54	3.3	54	80	3	159	31	7	18	41	1.79
42081--42237	27	5.8	27	77	6	149	27	9	21	41	1.84
42081--42204	54	2.3	54	87	0	167	26	8	23	41	1.82
42236--42381	27	5.4	27	85	3	186	39	8	23	28	1.83
42236--42381	54	2.7	54	88	2	213	39	8	23	28	1.83
53504--53545	21	2.0	20	86	4	57	35	28	19	16	1.93
60514--61016	49	10.4	49	91	3	765	32	8	29	29	1.86
60514--61016	96	5.2	97	91	3	752	32	8	29	29	1.86
63240--63466	40	5.7	40	85	3	298	25	22	26	25	2.00
63672--63780	57	1.9	57	86	1	155	22	19	28	29	1.98
67244--67793	47	11.4	49	91	3	836	32	8	29	29	1.87
67250--67793	96	5.7	95	91	2	815	32	8	29	29	1.87
79073--79101	9	3.2	9	100	0	58	41	10	20	27	1.85
80600--80633	14	2.2	16	90	10	54	79	5	5	8	1.05
84290--84428	40	3.5	40	93	2	228	23	23	26	25	2.00

Tables:   1

The End!