Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1589
Parameters: 2 7 7 80 10 50 1000
Length:  51219

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4106--4174
27
2.5
27
92
2
111
33
28
11
26
1.91
4620--4646
12
2.2
12
100
0
54
40
0
7
51
1.30
24696--24921
50
4.5
51
79
9
223
25
18
25
30
1.98
24746--24933
99
1.9
100
81
6
229
26
18
25
30
1.98
25011--25062
27
2.0
26
81
11
61
38
1
23
36
1.66
30183--30261
29
2.7
29
86
5
106
27
32
15
24
1.95
34099--34202
27
3.9
27
87
3
140
32
18
24
25
1.97
34628--34697
27
2.7
25
73
18
70
20
22
18
38
1.93
34817--34878
25
2.5
25
89
0
88
22
20
12
43
1.86
34868--34898
12
2.6
12
94
0
53
16
12
12
58
1.64
36864--36968
27
3.9
26
71
7
84
37
23
7
31
1.83
36959--37145
27
7.0
27
86
2
252
35
19
20
24
1.95
36960--37145
80
2.3
81
88
0
266
36
19
19
24
1.95
37759--37882
6
20.3
6
73
15
103
19
17
13
49
1.80
37762--37856
25
3.9
24
80
6
111
18
18
14
47
1.83
41098--41281
40
4.6
40
82
6
196
23
20
27
28
1.99
41098--41278
80
2.3
81
83
9
221
23
20
27
27
1.99
41179--41328
40
3.8
38
80
8
122
24
22
28
24
1.99
49960--50140
40
4.6
39
76
8
152
28
27
20
23
1.99
49962--50087
39
3.2
39
80
4
137
28
28
20
22
1.98
49962--50138
79
2.2
78
81
9
191
27
28
20
23
1.99
49962--50140
39
4.5
40
79
6
109
27
27
21
22
1.99

Tables:   1

The End!