genome.fa.s329.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold514
Parameters: 2 7 7 80 10 50 1000
Length:  50061

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2815--3035	39	5.6	40	85	5	236	24	20	28	26	1.99
2815--3037	79	2.8	78	82	3	250	24	20	28	26	1.99
2889--3069	78	2.3	79	80	3	197	25	20	28	25	1.99
10673--10934	119	2.2	120	85	4	352	25	20	27	26	1.99
10673--10934	40	6.6	40	89	3	343	25	20	27	26	1.99
10673--10934	79	3.3	79	88	4	350	25	20	27	26	1.99
19259--19294	19	1.9	19	88	5	56	50	25	0	25	1.50
22517--22557	19	2.2	19	86	4	57	31	0	4	63	1.15
24035--24295	40	6.5	40	89	0	396	22	15	27	34	1.95
27516--27566	20	2.7	19	82	14	54	41	0	21	37	1.54
28148--28360	46	4.5	47	74	5	144	30	20	26	22	1.98
28187--28360	95	1.8	95	83	1	233	29	20	27	22	1.98
31291--31614	43	7.6	43	79	6	329	32	28	14	24	1.94
31303--31615	85	3.7	85	82	3	312	32	28	14	24	1.94
37605--37648	23	1.9	23	85	0	61	47	13	6	31	1.69
40098--40169	37	1.9	37	97	0	135	29	30	19	20	1.97
40316--40499	98	1.9	96	91	4	298	30	26	7	35	1.84
40316--40500	48	3.8	48	90	4	291	30	25	7	35	1.84
40473--40616	47	3.1	47	83	0	153	28	29	9	32	1.88
44722--45025	40	7.8	40	91	4	489	25	27	21	25	1.99
49068--49271	48	4.4	45	77	15	111	34	9	27	27	1.88
49146--49329	98	1.9	96	89	4	289	36	7	25	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49145--49329	48	3.8	48	87	5	282	36	7	25	30	1.84

Tables:   1

The End!