Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3792
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85286
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Found at i:6497 original size:27 final size:27
Alignment explanation
Indices: 6430--6606 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
6420 TAAATTGTAC
6430 AGCACTAAGTGTGCG-ATTCGACTATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
* * *
6457 -GTACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
6482 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
6510 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGAAT-TGACTATGT
* * *
6538 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
6565 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
6592 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
6607 GGCTCAAATA
Statistics
Matches: 126, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
26 19 0.15
27 84 0.67
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:6548 original size:82 final size:80
Alignment explanation
Indices: 6431--6585 Score: 213
Period size: 82 Copynumber: 1.9 Consensus size: 80
6421 AAATTGTACA
* * *
6431 GCACTAAGTGTGCGATTCGACTATGTGTACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGT
6495 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
** *
6511 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGT-GCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
6576 TGCGAGTTGA
64 TGCGAATTGA
6586 TTATATAGCA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 17 0.26
81 8 0.12
82 39 0.60
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (80 bp):
GCACTAAGTGTGCGAGTCGACTATGTGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:6551 original size:55 final size:53
Alignment explanation
Indices: 6430--6606 Score: 178
Period size: 55 Copynumber: 3.3 Consensus size: 53
6420 TAAATTGTAC
* * **
6430 AGCACTAAGTGTGCG-ATTCGACTATGTGTACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATT-GACTATGAGCACTAAGTGTGCGAGTTGAATATGT
* * *
6482 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTGACTATGT
1 A-GCACTAAGTGTGCGAATTGACTATG-AGCACTAAGTGTGCGAGT-TGAATATGT
* * * * *
6538 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATG-AGCACTAAGTGTGCGAGTTGAATATGT
*
6592 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
6607 GGCTCAAATA
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
52 1 0.01
53 20 0.19
54 38 0.36
55 45 0.43
56 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (53 bp):
AGCACTAAGTGTGCGAATTGACTATGAGCACTAAGTGTGCGAGTTGAATATGT
Found at i:6597 original size:82 final size:80
Alignment explanation
Indices: 6427--6606 Score: 209
Period size: 82 Copynumber: 2.2 Consensus size: 80
6417 GATTAAATTG
* * *
6427 TACAGCACTAAGTGTGCGATTCGACTATGTGTACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGAGTCGACTATGTGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
6492 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
6507 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGT-GCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
6571 AAGTGTGCGAGTTGATTA
63 AAGTGTGCGAATTGACCA
* *
6589 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
6607 GGCTCAAATA
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 19 0.23
81 9 0.11
82 54 0.66
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:8832 original size:36 final size:39
Alignment explanation
Indices: 8782--8954 Score: 170
Period size: 38 Copynumber: 4.6 Consensus size: 39
8772 CAACCAAGTA
*
8782 CCTTCGGGATTTAG-CGGATATAG-CAATCGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTCAATCGCACAAATG
* * *
8819 -CTTCGGGTCTTAGCACGGATAT-GTCACTAGCACAAATG
1 CCTTCGGGACTTAGC-CGGATATAGTCAATCGCACAAATG
8857 CCTTC-GGACTTAGCCCGGATATAG-CACTACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTCA--A-TCGCACAAATG
*
8898 CCTTCGGGACTTCGCCCGGATA-AGTCAA--GCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTCAATCGCACAAATG
8935 -CTTCGGGAC-TAGCCGGATAT
1 CCTTCGGGACTTAGCCGGATAT
8955 CATCCGAATA
Statistics
Matches: 115, Mismatches: 9, Indels: 26
0.77 0.06 0.17
Matches are distributed among these distances:
34 7 0.06
35 2 0.02
36 20 0.17
37 10 0.09
38 35 0.30
39 6 0.05
40 1 0.01
41 17 0.15
42 17 0.15
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTCAATCGCACAAATG
Found at i:8918 original size:80 final size:72
Alignment explanation
Indices: 8783--8954 Score: 195
Period size: 80 Copynumber: 2.3 Consensus size: 72
8773 AACCAAGTAC
* * *
8783 CTTCGGGATTTAG-CGGATATAGCAATCGCACAAATGCTTCGGGTCTTAGCACGGATATGTCACT
1 CTTCGGGA-CTAGCCGGATATAGCAATCGCACAAATGCTTCGGGACTTAGCACGGATAAGTCA--
8847 AGCACAAATG
63 AGCACAAATG
* *
8857 CCTTC-GGACTTAGCCCGGATATAGCACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATAA
1 -CTTCGGGAC-TAG-CCGGATATAGCA--A-TCGCACAAATG-CTTCGGGACTTAGCACGGATAA
8921 GTCAAGCACAAATG
59 GTCAAGCACAAATG
8935 CTTCGGGACTAGCCGGATAT
1 CTTCGGGACTAGCCGGATAT
8955 CATCCGAATA
Statistics
Matches: 84, Mismatches: 5, Indels: 15
0.81 0.05 0.14
Matches are distributed among these distances:
74 6 0.07
75 4 0.05
76 19 0.23
77 7 0.08
78 15 0.18
79 11 0.13
80 22 0.26
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (72 bp):
CTTCGGGACTAGCCGGATATAGCAATCGCACAAATGCTTCGGGACTTAGCACGGATAAGTCAAGC
ACAAATG
Found at i:16933 original size:40 final size:39
Alignment explanation
Indices: 16859--17083 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 39
16849 AACACAAGTA
* * *
16859 CCTTCGGGATTTAG-CCGGATATAGCAATTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATG
*
16898 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* *
16938 CCTTCGAGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTA---GCACAAATG
*
16981 CCTTCGGGACTTAGCCCGGATATAGGAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-GCACTAGCACAAATG
* *
17021 CCTTCGGGACTTAGCCCGGATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-GCACTAGCACAAATG
17061 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
17084 CATCCGAATA
Statistics
Matches: 168, Mismatches: 11, Indels: 13
0.88 0.06 0.07
Matches are distributed among these distances:
39 13 0.08
40 118 0.70
41 1 0.01
43 35 0.21
44 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATG
Found at i:16981 original size:83 final size:82
Alignment explanation
Indices: 16859--17083 Score: 343
Period size: 83 Copynumber: 2.8 Consensus size: 82
16849 AACACAAGTA
* *
16859 CCTTCGGGATTTAG-CCGGATATAGCAAT--TCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGCAATACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
**
16921 AGTCACTAGCACAAATG
66 AGGAACTAGCACAAATG
* *
16938 CCTTCGAGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGCAA-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
17003 TAGGAACTAGCACAAATG
65 TAGGAACTAGCACAAATG
*
17021 CCTTCGGGACTTAGCCCGGATATAG-GA-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGCAATACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
17084 CATCCGAATA
Statistics
Matches: 133, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
79 12 0.09
80 48 0.36
81 1 0.01
82 1 0.01
83 71 0.53
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.23
Consensus pattern (82 bp):
CCTTCGGGACTTAGCCCGGATATAGCAATACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
AGGAACTAGCACAAATG
Found at i:17072 original size:123 final size:122
Alignment explanation
Indices: 16859--17079 Score: 352
Period size: 123 Copynumber: 1.8 Consensus size: 122
16849 AACACAAGTA
* * * * *
16859 CCTTCGGGATTTAGCCGGATATAGCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGG
*
16924 CACTAGCACAAATGCCTTCGAGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
66 AACTAGCACAAATGCCTTCGAGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
*
16981 CCTTCGGGACTTAGCCCGGATATAGGAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAG-CCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* *
17046 GAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
65 GAACTAGCACAAATGCCTTCGAGACTTAGCCCGG
17080 ATATCATCCG
Statistics
Matches: 89, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
122 13 0.15
123 76 0.85
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (122 bp):
CCTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGG
AACTAGCACAAATGCCTTCGAGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
Found at i:22565 original size:93 final size:93
Alignment explanation
Indices: 22457--22627 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
22447 ACCCCTAAGT
* * *
22457 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
22522 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
22550 GAACTCAGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
22615 CGAGTTTGGATGC
66 CGAGTTCGGATGC
22628 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:22624 original size:46 final size:46
Alignment explanation
Indices: 22452--22620 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
22442 AACCCACCCC
* * *
22452 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
22498 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * * *
22546 TCA-CGAACTCAGACTCAACTCAACGAGTTTGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
22591 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
22621 TGGATGCTCA
Statistics
Matches: 102, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 56 0.55
47 27 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:23081 original size:30 final size:30
Alignment explanation
Indices: 23047--23106 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
23037 ATTTAATACG
23047 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
23077 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
23107 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:27935 original size:56 final size:55
Alignment explanation
Indices: 27846--28011 Score: 185
Period size: 56 Copynumber: 3.0 Consensus size: 55
27836 TTACATGTAA
* * * *
27846 TCACATATCGATGCC-ACTGTCTTAGACAG-GGTCTTACAATC-ACACATATATTGGAG
1 TCACATATCGATGCCAAC-GTATTAAAC-GTGGTCTTAC--TCGACACATATATCGAAG
27902 TCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGTACACATATATCGAAG
1 TCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCG-ACACATATATCGAAG
* * * *
27958 TCACATATCGATGCGAACATATTAAACGTGGTCTTACTTGCAGACATATATCGA
1 TCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCG-ACACATATATCGA
28012 TGCCATTGTC
Statistics
Matches: 97, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
54 2 0.02
55 1 0.01
56 92 0.95
57 2 0.02
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (55 bp):
TCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGACACATATATCGAAG
Found at i:29987 original size:39 final size:39
Alignment explanation
Indices: 29866--30089 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 39
29856 GCTACTCGTT
* * *
29866 CAAATGCTTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
* *
29906 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
* *
29946 CAAATGCCTTCGGGCTTAGCTCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
29985 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * * *
30024 CAAATGCCTTCGGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGTAAC-TCGCA
30065 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
30090 CATCATTCAA
Statistics
Matches: 162, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
39 74 0.46
40 78 0.48
41 10 0.06
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:30043 original size:79 final size:78
Alignment explanation
Indices: 29866--30089 Score: 258
Period size: 79 Copynumber: 2.8 Consensus size: 78
29856 GCTACTCGTT
* * * * *
29866 CAAATGCTTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGTCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
29931 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
29946 CAAATGCCTTCGGGCTTAG-CTCGGA-ATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGCTTAGTC-CGGATA-TAGTA-CTCGCACAAATGCCTTCGGGACTTAGCCCG
*
30008 GAATTAGTATCTCGCA
63 GAATTAGTAACTCGCA
* * *
30024 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGTCCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCG
30088 GA
63 GA
30090 CATCATTCAA
Statistics
Matches: 126, Mismatches: 9, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
78 38 0.30
79 53 0.42
80 35 0.28
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGTCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:30049 original size:118 final size:120
Alignment explanation
Indices: 29866--30089 Score: 287
Period size: 118 Copynumber: 1.9 Consensus size: 120
29856 GCTACTCGTT
* *
29866 CAAATGCTTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
29931 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCTCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * **
29985 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
30047 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
30090 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
117 4 0.04
118 55 0.61
119 31 0.34
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:34333 original size:18 final size:18
Alignment explanation
Indices: 34312--34402 Score: 60
Period size: 19 Copynumber: 4.9 Consensus size: 18
34302 TATCAAAACT
*
34312 AGAATCAAAATGAGAATC
1 AGAATCAAAATCAGAATC
*
34330 AGAATCAGAATCAGAATC
1 AGAATCAAAATCAGAATC
* * *
34348 AG-GTGACAGAATTAGAATC
1 AGAAT--CAAAATCAGAATC
**
34367 AGAATCAGTATCAGGTAA-C
1 AGAATCAAAATCA-G-AATC
*
34386 AAAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
34403 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
17 3 0.05
18 25 0.44
19 26 0.46
20 3 0.05
ACGTcount: A:0.51, C:0.13, G:0.18, T:0.19
Consensus pattern (18 bp):
AGAATCAAAATCAGAATC
Found at i:34335 original size:6 final size:6
Alignment explanation
Indices: 34312--34402 Score: 69
Period size: 6 Copynumber: 14.8 Consensus size: 6
34302 TATCAAAACT
* * * *
34312 AGAATC AAAATG AGAATC AGAATC AGAATC AGAATC AG-GTGAC AGAATT
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * *
34361 AGAATC AGAATC AGTATC AGGTAA-C AAAATC AAAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
34403 GTGAATGCAA
Statistics
Matches: 67, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
5 3 0.04
6 56 0.84
7 6 0.09
8 2 0.03
ACGTcount: A:0.51, C:0.13, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:34365 original size:31 final size:31
Alignment explanation
Indices: 34324--34402 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
34314 AATCAAAATG
*
34324 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
34355 AGAATTAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
34386 AAAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
34403 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:34967 original size:27 final size:26
Alignment explanation
Indices: 34934--35106 Score: 145
Period size: 27 Copynumber: 6.4 Consensus size: 26
34924 TTACCCCACA
* **
34934 AGGGTATCTCGATAATTCTATATTAC
1 AGGGTATTTCGATAATTCTACCTTAC
*
34960 AGGAGTATTTC-AGTAATTCTACCCTAC
1 AGG-GTATTTCGA-TAATTCTACCTTAC
*
34987 AGGGGTATTTCGATATTTCTACCTTACC
1 A-GGGTATTTCGATAATTCTACCTTA-C
* *
35015 AGGGTATTTTGATAATTCTACCCTAC
1 AGGGTATTTCGATAATTCTACCTTAC
* *
35041 AGGGGTATTT-TAGTAATTCTACCCTAC
1 A-GGGTATTTCGA-TAATTCTACCTTAC
* *
35068 AGGGGTATTTC-AGTATTTCTACCCTAC
1 A-GGGTATTTCGA-TAATTCTACCTTAC
35095 AGGGGTATTTCG
1 A-GGGTATTTCG
35107 GTATTTTGGT
Statistics
Matches: 127, Mismatches: 11, Indels: 16
0.82 0.07 0.10
Matches are distributed among these distances:
26 7 0.06
27 115 0.91
28 5 0.04
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.37
Consensus pattern (26 bp):
AGGGTATTTCGATAATTCTACCTTAC
Found at i:34977 original size:54 final size:52
Alignment explanation
Indices: 34918--35103 Score: 203
Period size: 54 Copynumber: 3.5 Consensus size: 52
34908 GGGTAAAATG
* * * **
34918 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTATATTACAGGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTAT-TCGATAATTCTACCTTACAGG-GTATTTCA
* *
34972 GTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCTTACCAGGGTATTT-T
1 GTAATTCTACCCTACAGGGGTA-TTCGATAATTCTACCTTA-CAGGGTATTTCA
** *
35025 GATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTCGA-TAATTCTACCTTACA-GGGTATTTCA
*
35080 GTATTTCTACCCTACAGGGGTATT
1 GTAATTCTACCCTACAGGGGTATT
35104 TCGGTATTTT
Statistics
Matches: 113, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
53 6 0.05
54 101 0.89
55 6 0.05
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (52 bp):
GTAATTCTACCCTACAGGGGTATTCGATAATTCTACCTTACAGGGTATTTCA
Found at i:35042 original size:81 final size:80
Alignment explanation
Indices: 34921--35194 Score: 255
Period size: 81 Copynumber: 3.3 Consensus size: 80
34911 TAAAATGGTA
* * * *
34921 ATTT-TACCCCACAAGGGTATCTCGATAATTCTATATTACAGGAGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTAC-AGGGTATTTCGATAATTCTACACTACAGGAGTATTTCAGTAATTCTACCCT
34985 ACAGGGGTATTTC-GAT
65 ACAGGGGTATTTCAG-T
* * * * *
35001 ATTTCTACCTTACCAGGGTATTTTGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTA-CAGGGTATTTCGATAATTCTACACTACAGGAGTATTTCAGTAATTCTACCCT
35066 ACAGGGGTATTTCAGT
65 ACAGGGGTATTTCAGT
* * * * ** *
35082 ATTTCTACCCTACAGGGGTATTTCGGTATTTTGGTATTTCTACCCTATAGGGGTATTTTGGTATT
1 ATTTCTACCCTACA-GGGTATTTC-G-A------TAATTCTACACTACAGGAGTATTTCAGTAAT
* *
35147 TCTACCCTACAAGGGTATTTCAGC
57 TCTACCCTACAGGGGTATTTCAGT
35171 ATTTCTACCCTACAAGGGTATTTC
1 ATTTCTACCCTAC-AGGGTATTTC
35195 AGTAATTTTA
Statistics
Matches: 164, Mismatches: 17, Indels: 17
0.83 0.09 0.09
Matches are distributed among these distances:
80 6 0.04
81 82 0.50
82 3 0.02
83 1 0.01
89 71 0.43
90 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (80 bp):
ATTTCTACCCTACAGGGTATTTCGATAATTCTACACTACAGGAGTATTTCAGTAATTCTACCCTA
CAGGGGTATTTCAGT
Found at i:35110 original size:27 final size:27
Alignment explanation
Indices: 34957--35198 Score: 247
Period size: 27 Copynumber: 8.7 Consensus size: 27
34947 AATTCTATAT
* *
34957 TACAGGAGTATTTCAGTAATTCTACCC
1 TACAGGGGTATTTCAGTATTTCTACCC
*
34984 TACAGGGGTATTTC-GATATTTCTACCT
1 TACAGGGGTATTTCAG-TATTTCTACCC
* *
35011 TACCA-GGGTATTT-TGATAATTCTACCC
1 TA-CAGGGGTATTTCAG-TATTTCTACCC
* *
35038 TACAGGGGTATTTTAGTAATTCTACCC
1 TACAGGGGTATTTCAGTATTTCTACCC
35065 TACAGGGGTATTTCAGTATTTCTACCC
1 TACAGGGGTATTTCAGTATTTCTACCC
35092 TACAGGGGTATTTCGGTATTTTGGTATTTCTACCC
1 TACAGGGGTATTTC---A-----GTATTTCTACCC
* **
35127 TATAGGGGTATTTTGGTATTTCTACCC
1 TACAGGGGTATTTCAGTATTTCTACCC
* *
35154 TACAAGGGTATTTCAGCATTTCTACCC
1 TACAGGGGTATTTCAGTATTTCTACCC
*
35181 TACAAGGGTATTTCAGTA
1 TACAGGGGTATTTCAGTA
35199 ATTTTACAAA
Statistics
Matches: 185, Mismatches: 17, Indels: 26
0.81 0.07 0.11
Matches are distributed among these distances:
26 3 0.02
27 154 0.83
28 3 0.02
30 1 0.01
35 24 0.13
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
TACAGGGGTATTTCAGTATTTCTACCC
Found at i:35110 original size:35 final size:35
Alignment explanation
Indices: 35071--35148 Score: 120
Period size: 35 Copynumber: 2.2 Consensus size: 35
35061 ACCCTACAGG
35071 GGTATTTCAGTATTTCTACCCTACAGGGGTATTTC
1 GGTATTTCAGTATTTCTACCCTACAGGGGTATTTC
** * *
35106 GGTATTTTGGTATTTCTACCCTATAGGGGTATTTT
1 GGTATTTCAGTATTTCTACCCTACAGGGGTATTTC
35141 GGTATTTC
1 GGTATTTC
35149 TACCCTACAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.18, C:0.15, G:0.22, T:0.45
Consensus pattern (35 bp):
GGTATTTCAGTATTTCTACCCTACAGGGGTATTTC
Found at i:35124 original size:62 final size:62
Alignment explanation
Indices: 35044--35167 Score: 194
Period size: 62 Copynumber: 2.0 Consensus size: 62
35034 ACCCTACAGG
*
35044 GGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAGGGGTATTTC
1 GGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
* * * **
35106 GGTATTTTGGTATTTCTACCCTATAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTC
1 GGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
35168 AGCATTTCTA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (62 bp):
GGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
Found at i:35150 original size:89 final size:89
Alignment explanation
Indices: 35017--35203 Score: 284
Period size: 89 Copynumber: 2.1 Consensus size: 89
35007 ACCTTACCAG
* *
35017 GGTATTTTGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGT
1 GGTATTTTGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCAGC
*
35082 ATTTCTACCCTACAGGGGTATTTC
66 ATTTCTACCCTACAAGGGTATTTC
* * * * *
35106 GGTATTTTGGTATTTCTACCCTATAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCAGC
1 GGTATTTTGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCAGC
35171 ATTTCTACCCTACAAGGGTATTTC
66 ATTTCTACCCTACAAGGGTATTTC
*
35195 AGTAATTTT
1 GGT-ATTTT
35204 ACAAACCAGG
Statistics
Matches: 88, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
89 83 0.94
90 5 0.06
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (89 bp):
GGTATTTTGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCAGC
ATTTCTACCCTACAAGGGTATTTC
Found at i:35216 original size:27 final size:27
Alignment explanation
Indices: 35186--35283 Score: 142
Period size: 27 Copynumber: 3.6 Consensus size: 27
35176 TACCCTACAA
*
35186 GGGTATTTCAGTAATTTTACAAACCAG
1 GGGTATTTTAGTAATTTTACAAACCAG
* * * *
35213 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAG
35240 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTAGTAATTTTACAAACCAG
*
35267 GGGTATTTTGGTAATTT
1 GGGTATTTTAGTAATTT
35284 GGTAAACTAA
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAACCAG
Found at i:35290 original size:54 final size:54
Alignment explanation
Indices: 35183--35290 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 54
35173 TTCTACCCTA
* *
35183 CAAGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGATAAAC
* *
35237 CAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGGTAAAC
1 CAAGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGATAAAC
35291 TAAAGTATTC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.37
Consensus pattern (54 bp):
CAAGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGATAAAC
Found at i:37268 original size:25 final size:25
Alignment explanation
Indices: 37240--37309 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
37230 TATCAAAACT
*
37240 AGAATCAAAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
37265 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
37290 AGAATTAGAATCAGAATCAG
1 AGAATCAGAATCAGAATCAG
37310 TATCAGGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:37504 original size:27 final size:26
Alignment explanation
Indices: 37456--37515 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
37446 GCGAGCCTTC
*
37456 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
37483 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
37509 CAGATAT
1 CAGATAT
37516 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:37563 original size:71 final size:67
Alignment explanation
Indices: 37484--37620 Score: 175
Period size: 67 Copynumber: 2.0 Consensus size: 67
37474 CACCAGATAC
* * *
37484 AGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGAG
1 AGATATTGTGACGAAGCCACCAGAAC--A-A-ATATATGTGGCGAAGCCACCAGATTGCAGCGAG
37549 GCTGCT
62 GCTGCT
* * * *
37555 AGATATTGTGACGAAGTCACCAGAACAACTATATGTGGTGAGGCCACCAGATTGCAGCGAGGCTG
1 AGATATTGTGACGAAGCCACCAGAACAAATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTG
37620 C
66 C
37621 CAGAACGCTT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
67 35 0.59
68 1 0.02
69 1 0.02
71 22 0.37
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.20
Consensus pattern (67 bp):
AGATATTGTGACGAAGCCACCAGAACAAATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTG
CT
Found at i:37958 original size:27 final size:27
Alignment explanation
Indices: 37915--38112 Score: 107
Period size: 27 Copynumber: 6.8 Consensus size: 27
37905 GTAATTCTAT
*
37915 TTCTACCCTACAAGGGTATTTCGA-TAA
1 TTCTACCCTACAGGGGTATTT-GAGTAA
* *
37942 TTCTACCCTATAGGGGTATTTTAGTAA
1 TTCTACCCTACAGGGGTATTTGAGTAA
*
37969 TTCTACCCTACAGGGGTATTTTCGTATTTTGGTAT
1 TTCTACCCTACAGGGGTA-TTT-G-A-----GTAA
*
38004 TTCTACCCTACAGGGGTATTTTGGTATTTCGGTAT
1 TTCTACCCTACAGGGGTA-TTT-G-A-----GTAA
*
38039 TTCTACCCTACAGGGGTATTTCGA-TAT
1 TTCTACCCTACAGGGGTATTT-GAGTAA
* * *
38066 TTCTACCCTACAAGGGTATTTCG-GCAT
1 TTCTACCCTACAGGGGTATTT-GAGTAA
*
38093 TTCTACCCTA-AAGGGTATTT
1 TTCTACCCTACAGGGGTATTT
38113 TTGTAATTTT
Statistics
Matches: 150, Mismatches: 11, Indels: 21
0.82 0.06 0.12
Matches are distributed among these distances:
26 11 0.07
27 76 0.51
28 3 0.02
30 1 0.01
33 1 0.01
34 4 0.03
35 54 0.36
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (27 bp):
TTCTACCCTACAGGGGTATTTGAGTAA
Found at i:38008 original size:35 final size:35
Alignment explanation
Indices: 37957--38067 Score: 170
Period size: 35 Copynumber: 3.2 Consensus size: 35
37947 CCCTATAGGG
* *
37957 GTATTTTAGTAATTCTACCCTACAGGGGTATTTTC
1 GTATTTTGGTATTTCTACCCTACAGGGGTATTTTC
*
37992 GTATTTTGGTATTTCTACCCTACAGGGGTATTTTG
1 GTATTTTGGTATTTCTACCCTACAGGGGTATTTTC
*
38027 GTATTTCGGTATTTCTACCCTACAGGGGTA-TTTC
1 GTATTTTGGTATTTCTACCCTACAGGGGTATTTTC
38061 GATATTT
1 G-TATTT
38068 CTACCCTACA
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
34 4 0.06
35 66 0.94
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.44
Consensus pattern (35 bp):
GTATTTTGGTATTTCTACCCTACAGGGGTATTTTC
Found at i:38097 original size:124 final size:122
Alignment explanation
Indices: 37882--38122 Score: 313
Period size: 124 Copynumber: 2.0 Consensus size: 122
37872 ATCTCAGTAG
*
37882 TTCTACCTTACAGGAGTATTTCAGTAATTCTATTTCTACCCTACAAGGGTATTTCGATAATTCTA
1 TTCTACCCTACAGGAGTATTTCAGTAATTCTATTTCTACCCTACAAGGGTATTTCGATAATTCTA
* * * * *
37947 CCCTATAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTTCGT-ATTTTGGTAT
66 CCCTACAAGGGTATTTCAGCAATTCTACCCTA-AAGGGTATTTTCGTAATTTTGGTAT
* ** * * *
38004 TTCTACCCTACAGGGGTATTTTGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCGATATTTC
1 TTCTACCCTACAGGAGTATTTCAGTAATTC--TATTTCTACCCTACAAGGGTATTTCGATAATTC
* * *
38069 TACCCTACAAGGGTATTTCGGCATTTCTACCCTAAAGGGTATTTTTGTAATTTT
64 TACCCTACAAGGGTATTTCAGCAATTCTACCCTAAAGGGTATTTTCGTAATTTT
38123 ACAAACCAGG
Statistics
Matches: 101, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
122 25 0.25
123 12 0.12
124 64 0.63
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.41
Consensus pattern (122 bp):
TTCTACCCTACAGGAGTATTTCAGTAATTCTATTTCTACCCTACAAGGGTATTTCGATAATTCTA
CCCTACAAGGGTATTTCAGCAATTCTACCCTAAAGGGTATTTTCGTAATTTTGGTAT
Found at i:38121 original size:27 final size:26
Alignment explanation
Indices: 38026--38112 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 26
38016 GGGGTATTTT
* *
38026 GGTATTTCGGTATTTCTACCCTACAGG
1 GGTATTTC-GAATTTCTACCCTACAAG
38053 GGTATTTCGATATTTCTACCCTACAAG
1 GGTATTTCGA-ATTTCTACCCTACAAG
*
38080 GGTATTTCGGCATTTCTACCCTA-AAG
1 GGTATTTC-GAATTTCTACCCTACAAG
38106 GGTATTT
1 GGTATTT
38113 TTGTAATTTT
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
26 11 0.20
27 43 0.78
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.38
Consensus pattern (26 bp):
GGTATTTCGAATTTCTACCCTACAAG
Found at i:38135 original size:27 final size:26
Alignment explanation
Indices: 38104--38201 Score: 117
Period size: 27 Copynumber: 3.7 Consensus size: 26
38094 TCTACCCTAA
38104 AGGGTATTTTTGTAATTTTACAAACC
1 AGGGTATTTTTGTAATTTTACAAACC
* * *
38130 AGGGGTATTTTGGTGATTTTATAAACC
1 A-GGGTATTTTTGTAATTTTACAAACC
*
38157 AAGGGTATTTTAGTAATTTTACAAACC
1 -AGGGTATTTTTGTAATTTTACAAACC
*
38184 AAGGTA-TTTTGATAATTT
1 AGGGTATTTTTG-TAATTT
38202 GGTAAACTAA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
25 4 0.07
26 12 0.20
27 44 0.72
28 1 0.02
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (26 bp):
AGGGTATTTTTGTAATTTTACAAACC
Found at i:42974 original size:27 final size:27
Alignment explanation
Indices: 42914--43086 Score: 195
Period size: 27 Copynumber: 6.4 Consensus size: 27
42904 ACCCTTAATC
*
42914 GGGTAAAATGACTGAAATA-CCCCATA
1 GGGTAAAATGACCGAAATACCCCCATA
*
42940 GGGTAAAATGACCGAAATACCCACATA
1 GGGTAAAATGACCGAAATACCCCCATA
**
42967 GGGTAAAATGATTGAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCCATA
*
42994 GCGTAAAATGACCGAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCCATA
* * *
43021 GGGTAAAGTGACCGAAATATCCCTATA
1 GGGTAAAATGACCGAAATACCCCCATA
* * * ** * * *
43048 AGTTATAATGATTGTAATTCCCCTATA
1 GGGTAAAATGACCGAAATACCCCCATA
43075 GGGTAAAATGAC
1 GGGTAAAATGAC
43087 TATTTTGCCC
Statistics
Matches: 121, Mismatches: 25, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
26 18 0.15
27 103 0.85
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCCATA
Found at i:43058 original size:81 final size:80
Alignment explanation
Indices: 42916--43086 Score: 227
Period size: 81 Copynumber: 2.1 Consensus size: 80
42906 CCTTAATCGG
* *
42916 GTAAAATGACTGAAATACCCCATAGGGTAAAATGACCGAAATACCCACATAGGGTAAAATGATTG
1 GTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAATACCCACATAAGGTAAAATGATTG
42981 AAATACCCCCATAGC
66 AAATACCCCCATAGC
* * * *
42996 GTAAAATGACCGAAATACCCCCATAGGGTAAAGTGACCGAAATATCCC-TATAAGTTATAATGAT
1 GTAAAATGACCGAAATA-CCCCATAGGGTAAAATGACCGAAATA-CCCACATAAGGTAAAATGAT
* * * *
43060 TGTAATTCCCCTATAGG
64 TGAAATACCCCCATAGC
43077 GTAAAATGAC
1 GTAAAATGAC
43087 TATTTTGCCC
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 16 0.20
81 60 0.76
82 3 0.04
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (80 bp):
GTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAATACCCACATAAGGTAAAATGATTG
AAATACCCCCATAGC
Found at i:43106 original size:27 final size:27
Alignment explanation
Indices: 43076--43161 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 27
43066 TCCCCTATAG
43076 GGTAAAATGACTATTTTGCCCTTGTAA
1 GGTAAAATGACTATTTTGCCCTTGTAA
*
43103 GGTAAAATGACTATTTTGCCCTTGTGA
1 GGTAAAATGACTATTTTGCCCTTGTAA
* * * * *
43130 GGCAAAATGACTGTTTTCCCCTTATAT
1 GGTAAAATGACTATTTTGCCCTTGTAA
43157 GGTAA
1 GGTAA
43162 GGTAATTGTT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAAAATGACTATTTTGCCCTTGTAA
Found at i:51962 original size:21 final size:22
Alignment explanation
Indices: 51936--51990 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
51926 CAGACCTCTA
**
51936 ACACGGGCGTGTCCA-AGGGTC
1 ACACGGGCGTGTCCATAGGACC
*
51957 ACACGGGCGTGTCCATTGGACC
1 ACACGGGCGTGTCCATAGGACC
51979 ACACGGGCGTGT
1 ACACGGGCGTGT
51991 GAGCCCTGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 15 0.50
22 15 0.50
ACGTcount: A:0.18, C:0.29, G:0.36, T:0.16
Consensus pattern (22 bp):
ACACGGGCGTGTCCATAGGACC
Found at i:54988 original size:48 final size:48
Alignment explanation
Indices: 54893--55032 Score: 154
Period size: 48 Copynumber: 2.9 Consensus size: 48
54883 ACCATGGCCA
* * *
54893 ATGAGAGCCAATGTAAGACCATGTTTGGGACATGGCATCTGCATTGAT
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAT
* * **
54941 TTGAGAGCCAGTGTAAGACCTTGTCTGGGACATGGCATCGGTGTTGAT
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAT
* * * * * **
54989 ATGTGTGCTAGTGTAAGGCCATATCTGGGATGTGGCATCGGCAT
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
55033 CGGTATGTGG
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
48 74 1.00
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (48 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAT
Found at i:57093 original size:38 final size:40
Alignment explanation
Indices: 57034--57113 Score: 110
Period size: 39 Copynumber: 2.0 Consensus size: 40
57024 GCGTTATACT
*
57034 TTTTGTTCGATGTGATTCGGGTGGATCA-CTCTTATGAGC
1 TTTTGTTCGATGTGATTCGGGTGGATAAGCTCTTATGAGC
* * *
57073 TTTTGTT-GGTGTGCTTCGGGTGGATAAGTTCTTATGAGC
1 TTTTGTTCGATGTGATTCGGGTGGATAAGCTCTTATGAGC
57112 TT
1 TT
57114 CGGTTCATCT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
38 17 0.47
39 19 0.53
ACGTcount: A:0.14, C:0.12, G:0.30, T:0.44
Consensus pattern (40 bp):
TTTTGTTCGATGTGATTCGGGTGGATAAGCTCTTATGAGC
Found at i:58963 original size:21 final size:21
Alignment explanation
Indices: 58914--59013 Score: 94
Period size: 21 Copynumber: 4.8 Consensus size: 21
58904 TTTGGGTGGA
* *
58914 TCAGCTCGT-ATGAGCTTTTGC
1 TCAGCTC-TCATGAGCTTCTGT
* ** *
58935 TCAACTCTTTTGAGCTTCTTT
1 TCAGCTCTCATGAGCTTCTGT
* *
58956 TTAGCTCTCACGAGCTTCTGT
1 TCAGCTCTCATGAGCTTCTGT
*
58977 TCAGCTCTCATGAGCTTCTAT
1 TCAGCTCTCATGAGCTTCTGT
*
58998 TCAACTCTCATGAGCT
1 TCAGCTCTCATGAGCT
59014 GAACAAAAGC
Statistics
Matches: 63, Mismatches: 15, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
20 1 0.02
21 62 0.98
ACGTcount: A:0.17, C:0.27, G:0.16, T:0.40
Consensus pattern (21 bp):
TCAGCTCTCATGAGCTTCTGT
Found at i:67210 original size:40 final size:40
Alignment explanation
Indices: 67127--67389 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
67117 TTGAATGCTG
* * * * * *
67127 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
67167 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
67207 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67247 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
67287 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67327 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67366 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67390 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:67409 original size:79 final size:80
Alignment explanation
Indices: 67166--67424 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
67156 AAGTGAATAT
* * * * * *
67166 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
67230 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
67246 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
67311 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
67326 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
67390 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
67405 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
67425 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:75240 original size:77 final size:77
Alignment explanation
Indices: 75060--75358 Score: 354
Period size: 77 Copynumber: 3.8 Consensus size: 77
75050 TTGAATGCTG
* * * * * * * *
75060 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
*
75123 TTGTGCGAGATACTAAA
64 TCGTGCGAG-T--TAAA
75140 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
75205 GTGCGAGTTAAA
66 GTGCGAGTTAAA
*
75217 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCA-GC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
75281 GTGCGAGTTGTTAAA
66 GTGCGA---GTTAAA
* * * * * *
75296 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
75359 TGAACGAGGA
Statistics
Matches: 196, Mismatches: 17, Indels: 13
0.87 0.08 0.06
Matches are distributed among these distances:
76 7 0.04
77 66 0.34
78 32 0.16
79 31 0.16
80 54 0.28
81 6 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (77 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTAAA
Found at i:75295 original size:39 final size:40
Alignment explanation
Indices: 75060--75358 Score: 360
Period size: 40 Copynumber: 7.6 Consensus size: 40
75050 TTGAATGCTG
* * * * * *
75060 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
75100 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
75140 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
75180 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG---TTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
75217 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
75257 TCCGGGTTAAGTCCCGAAGGCA-GCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
75296 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
75335 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
75359 TGAACGAGGA
Statistics
Matches: 231, Mismatches: 21, Indels: 15
0.87 0.08 0.06
Matches are distributed among these distances:
37 37 0.16
39 71 0.31
40 115 0.50
41 8 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:80336 original size:40 final size:40
Alignment explanation
Indices: 80277--80401 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
80267 TATTCGGATG
* *
80277 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTTGTGACT
1 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCTAGTGACT
80317 ATATTCC-GGCGAAGTCCCGAAGGCATTTG-GCGTAGTTG-CT
1 ATA-TCCGGGCGAAGTCCCGAAGGCATTTGTGC-TAG-TGACT
*
80357 ATA-CCGGGCTAAGTCCCGAA-GCATTCTGTGCTAGTGAC-
1 ATATCCGGGCGAAGTCCCGAAGGCATT-TGTGCTAGTGACT
80395 ATATCCG
1 ATATCCG
80402 TGCTAGACCG
Statistics
Matches: 74, Mismatches: 3, Indels: 17
0.79 0.03 0.18
Matches are distributed among these distances:
38 12 0.16
39 24 0.32
40 33 0.45
41 5 0.07
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:82763 original size:48 final size:48
Alignment explanation
Indices: 82701--83389 Score: 933
Period size: 47 Copynumber: 14.7 Consensus size: 48
82691 ATAATATGTG
82701 TGTGGTAAAGCCGAATGGCTA-TGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
82748 TGTGGGTAAAGCCGAATGGCTA-TGTGAAA-ATATATGAGATATGTATA
1 TGT-GGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
82795 TGTGGTAAAGCCGAATAGGCTAGTGT-AAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAAT-GGCTAGTGTGAAATAT-ATATGAGATATGTATA
*
82843 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
82891 T-TGTGT-AAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATG--TA
1 TGTG-GTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
*
82936 TGTGGTAAAGCCGAATGGCTAATGTGAAATATAT-TGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
82983 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGT-TGAGATAT-TATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
83029 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
* * *
83077 TTGTGGTAAA--CGAATGGCTAGTGTGAAA-ATGTGTGAGATATAT-TA
1 -TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
83122 TAGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 T-GTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
83171 TGT-GTAAAGCCGAATGGCTAGTGTG-AATATATATAAGATATGGA-A
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
83216 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
* *
83264 TGTGGTAAAGCCGAAT-GCGTAGTGTGAAATATCTGTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGC-TAGTGTGAAATATATATGAGATATGTATA
* * * *
83312 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGATGTGTGTA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* * *
83360 TATTGT--GGCCGAATGGCTAGTGTGAAATAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
83390 GTTGGAGATG
Statistics
Matches: 583, Mismatches: 28, Indels: 63
0.86 0.04 0.09
Matches are distributed among these distances:
44 1 0.00
45 29 0.05
46 146 0.25
47 202 0.35
48 190 0.33
49 15 0.03
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
Found at i:83578 original size:34 final size:37
Alignment explanation
Indices: 83533--83626 Score: 122
Period size: 34 Copynumber: 2.6 Consensus size: 37
83523 TGAAATATAT
83533 TCCGGGTAAGACCCGATGACTACATGT-G-GATTATC
1 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATC
* * * *
83568 T-CGGGTAAGACCCCATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATC
*
83604 TCCGGGTAAGACCCGATAACTAC
1 TCCGGGTAAGACCCGATGACTAC
83627 GCGTGGGACT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
34 23 0.46
35 2 0.04
36 6 0.12
37 19 0.38
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACATGTGGAGATTATC
Found at i:83626 original size:37 final size:36
Alignment explanation
Indices: 83533--83634 Score: 127
Period size: 37 Copynumber: 2.9 Consensus size: 36
83523 TGAAATATAT
*
83533 TCCGGGTAAGACCCGATGACTACATGT-GGATTATC
1 TCCGGGTAAGACCCGATGACTACGTGTGGGATTATC
* * *
83568 T-CGGGTAAGACCCCATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGG-GATTATC
* *
83604 TCCGGGTAAGACCCGATAACTACGCGTGGGA
1 TCCGGGTAAGACCCGATGACTACGTGTGGGA
83635 CTATTCGAGC
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
34 23 0.40
35 2 0.04
36 8 0.14
37 24 0.42
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (36 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGGATTATC
Done.