Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2335
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46498
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.30
Found at i:1775 original size:40 final size:40
Alignment explanation
Indices: 1731--1954 Score: 220
Period size: 40 Copynumber: 5.7 Consensus size: 40
1721 AGCTGACCAT
1731 ATCCGGAGCTAAGATCCGAAGGCATTTG-GCGAGATACTAA
1 ATCCGG-GCTAAGATCCGAAGGCATTTGTGCGAGATACTAA
*
1771 ATCC-GACTAAGA-CCGAAGGCATTTGTGGCGAGATACTAA
1 ATCCGGGCTAAGATCCGAAGGCATTTGT-GCGAGATACTAA
*
1810 ATCCGGACTAAGATCCG-AGGCAGTTTGTGCGAGATACT-A
1 ATCCGGGCTAAGATCCGAAGGCA-TTTGTGCGAGATACTAA
* * *
1849 TTCCGGGCTTAAG-TCCCAAGGCA-TTGTGCGAGTTACTAA
1 ATCCGGGC-TAAGATCCGAAGGCATTTGTGCGAGATACTAA
*
1888 ATCCGGGTTAA-AGTCCCG-AGGCATTTGTGCGA-ATTACTATA
1 ATCCGGGCTAAGA-T-CCGAAGGCATTTGTGCGAGA-TACTA-A
*
1929 A-CCGGGCTATG-TCCCGAAGGCATTTG
1 ATCCGGGCTAAGAT-CCGAAGGCATTTG
1955 AATGAGAGCT
Statistics
Matches: 157, Mismatches: 11, Indels: 32
0.79 0.05 0.16
Matches are distributed among these distances:
37 13 0.08
38 22 0.14
39 45 0.29
40 67 0.43
41 10 0.06
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGATACTAA
Found at i:1808 original size:39 final size:39
Alignment explanation
Indices: 1731--1893 Score: 185
Period size: 39 Copynumber: 4.2 Consensus size: 39
1721 AGCTGACCAT
1731 ATCCGGAGCTAAGATCCGAAGGCATT-TGGCGAGATACTAA
1 ATCCGGA-CTAAGATCCGAAGGCATTGT-GCGAGATACTAA
1771 ATCC-GACTAAGA-CCGAAGGCATTTGTGGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCA-TTGT-GCGAGATACTAA
1810 ATCCGGACTAAGATCCG-AGGCAGTTTGTGCGAGATACT-A
1 ATCCGGACTAAGATCCGAAGGCA--TTGTGCGAGATACTAA
* * * *
1849 TTCCGGGCTTAAG-TCCCAAGGCATTGTGCGAGTTACTAA
1 ATCCGGAC-TAAGATCCGAAGGCATTGTGCGAGATACTAA
1888 ATCCGG
1 ATCCGG
1894 GTTAAAGTCC
Statistics
Matches: 110, Mismatches: 5, Indels: 17
0.83 0.04 0.13
Matches are distributed among these distances:
37 9 0.08
38 21 0.19
39 36 0.33
40 36 0.33
41 8 0.07
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (39 bp):
ATCCGGACTAAGATCCGAAGGCATTGTGCGAGATACTAA
Found at i:1888 original size:78 final size:77
Alignment explanation
Indices: 1731--1952 Score: 229
Period size: 78 Copynumber: 2.8 Consensus size: 77
1721 AGCTGACCAT
* * * *
1731 ATCCGGAGCTAAGATCCGAAGGCATTTG-GCGAGATACTAAATCC-GACTAAGACCGAAGGCATT
1 ATCCGGA-CTAAGATCCG-AGGCATTTGTGCGAGATACT-ATTCCGGGCTAAGTCCCAAGGCA-T
1794 TGTGGCGAGATACTAA
62 TGTGGCGAGATACTAA
1810 ATCCGGACTAAGATCCGAGGCAGTTTGTGCGAGATACTATTCCGGGCTTAAGTCCCAAGGCATTG
1 ATCCGGACTAAGATCCGAGGCA-TTTGTGCGAGATACTATTCCGGGC-TAAGTCCCAAGGCATTG
*
1875 T-GCGAGTTACTAA
64 TGGCGAGATACTAA
** * *
1888 ATCCGGGTTAA-AGTCCCGAGGCATTTGTGCGA-ATTACTATAACCGGGCTATGTCCCGAAGGCA
1 ATCCGGACTAAGA-T-CCGAGGCATTTGTGCGAGA-TACTAT-TCCGGGCTAAGTCCC-AAGGCA
1951 TT
61 TT
1953 TGAATGAGAG
Statistics
Matches: 125, Mismatches: 9, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
77 7 0.06
78 61 0.49
79 45 0.36
80 12 0.10
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.24
Consensus pattern (77 bp):
ATCCGGACTAAGATCCGAGGCATTTGTGCGAGATACTATTCCGGGCTAAGTCCCAAGGCATTGTG
GCGAGATACTAA
Found at i:11238 original size:40 final size:40
Alignment explanation
Indices: 11194--11457 Score: 298
Period size: 40 Copynumber: 6.7 Consensus size: 40
11184 TTGAATGATG
*
11194 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-ATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTA-AA
*
11234 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
11274 TCCGGACTAGAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTA-AG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
11315 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
11355 TCC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
11394 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
11434 -CC-GGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
11458 AACGAGGAGC
Statistics
Matches: 204, Mismatches: 10, Indels: 21
0.87 0.04 0.09
Matches are distributed among these distances:
38 17 0.08
39 52 0.25
40 83 0.41
41 51 0.25
42 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:11317 original size:81 final size:79
Alignment explanation
Indices: 11198--11457 Score: 329
Period size: 81 Copynumber: 3.3 Consensus size: 79
11188 ATGATGTCCG
*
11198 GGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-ATAATCCGGACTAAGATCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTA-AATCCGGACTAAGATCCGAAGGCATTTG
11260 TGCGAGATACTAAATCC
63 TGCGAGATACTAAATCC
11277 GGACTAGAGAT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTG
1 GG-CTA-AG-TCCCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTG
*
11341 TGCGAGATACTAATTCC
63 TGCGAGATACTAAATCC
* **
11358 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-TTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTG
11421 CGA-ATTACTATAA-CC
65 CGAGA-TACTA-AATCC
*
11436 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
11458 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 7, Indels: 21
0.85 0.04 0.11
Matches are distributed among these distances:
77 1 0.01
78 38 0.23
79 49 0.30
80 6 0.04
81 58 0.35
82 11 0.07
83 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGC
GAGATACTAAATCC
Found at i:11475 original size:78 final size:78
Alignment explanation
Indices: 11198--11489 Score: 237
Period size: 81 Copynumber: 3.7 Consensus size: 78
11188 ATGATGTCCG
** * *
11198 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-ATAATCCGGACTAAGAT-CCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTA-AATCCGG-TTAA-ATCCCGAAGGCATTTG
11260 TGCGAGATACTAA-ATCC
62 TGCGAGATACTAATA-CC
** *
11277 GGACTAGAGAT-CCGAAGGCATTTGTGCGAGAT-ACTAAATCCGGACTAAGAT-CCGAAGGCATT
1 GG-CTA-AG-TCCCGAAGGCATTTGAACGAG-TGACTAAATCCGG-TTAA-ATCCCGAAGGCATT
*
11339 TGTGCGAGATACTAATTCC
60 TGTGCGAGATACTAATACC
** * *
11358 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCA-TTGTGC
1 GGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTTGTGC
11422 GA-ATTACT-ATAACC
65 GAGA-TACTAAT-ACC
* * *
11436 GGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAG
1 GGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAG
11490 TACGTGATTT
Statistics
Matches: 187, Mismatches: 12, Indels: 30
0.82 0.05 0.13
Matches are distributed among these distances:
77 17 0.09
78 49 0.26
79 44 0.24
80 8 0.04
81 59 0.32
82 10 0.05
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (78 bp):
GGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTGTGCG
AGATACTAATACC
Found at i:14382 original size:36 final size:37
Alignment explanation
Indices: 14310--14387 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
14300 TTATTACGAA
* *
14310 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
*
14347 GTCTTACCCGGACA-AATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
14383 GTCTT
1 GTCTT
14388 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 24 0.63
37 14 0.37
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
Found at i:14584 original size:47 final size:47
Alignment explanation
Indices: 14506--15129 Score: 1049
Period size: 47 Copynumber: 13.5 Consensus size: 47
14496 CCCTTCGGGA
* * * * * *
14506 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14553 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14600 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14647 CTTATCACATATATACACTTTCACATTCATCACATCGG-C-TTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14692 CTTATCACATATATACACTTTCGCATTCATCAC-TCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14738 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14785 CTTATCACATATATATACACTTTCACATTCATCACATCGGCC-TTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14833 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14880 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14927 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14974 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15021 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15067 CTTATCA-ATAT-TACAC-TTCAC--TCAT---ATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15106 CTTATCACATATATACACTTTCAC
1 CTTATCACATATATACACTTTCAC
15130 GTATACAACT
Statistics
Matches: 553, Mismatches: 14, Indels: 25
0.93 0.02 0.04
Matches are distributed among these distances:
38 13 0.02
39 7 0.01
40 4 0.01
41 9 0.02
42 5 0.01
43 5 0.01
44 9 0.02
45 43 0.08
46 77 0.14
47 335 0.61
48 14 0.03
49 32 0.06
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15110 original size:39 final size:39
Alignment explanation
Indices: 15046--15125 Score: 119
Period size: 38 Copynumber: 2.1 Consensus size: 39
15036 CACTTTCACA
15046 TTCATCACATCGGCCATTAGGCTTATCA-ATAT-TACAC
1 TTCATCACATCGGCCATTAGGCTTATCACATATATACAC
*
15083 TTCACTCATATCGGCCATTAGGCCTTATCACATATATACAC
1 TTCA-TCACATCGGCCATTAGG-CTTATCACATATATACAC
15124 TT
1 TT
15126 TCACGTATAC
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
37 4 0.11
38 16 0.42
39 7 0.18
40 4 0.11
41 7 0.18
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.34
Consensus pattern (39 bp):
TTCATCACATCGGCCATTAGGCTTATCACATATATACAC
Found at i:18824 original size:40 final size:39
Alignment explanation
Indices: 18671--19043 Score: 352
Period size: 39 Copynumber: 9.8 Consensus size: 39
18661 CGAGCATGAT
* * *
18671 TGCTCTTCGGGACCTAGCCCGGATATACCACGCAGCA-GAA
1 TGCTCTTCGGGACTTAG-CCGGATATATCAC-TAGCACGAA
*
18711 TGCTCTTCGGG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGC-CGGATATATCACTAGCACGAA
* *
18750 TGCTCTTC-GAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAG-CCGGATATATCACTAGCACGAA
* *
18789 TGCTCTTCGGGATTTAACCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCC-GGATATATCACTAGCACGAA
* * * * * * *
18829 --CT-TGTCCGGA-TTA-TC--A-CTAGCAC--GAATG-C
1 TGCTCT-TCGGGACTTAGCCGGATATATCACTAGCACGAA
** *
18858 T-CT-TCGGAGACTTAGCCGGATATATCA-TAGCACGAA
1 TGCTCTTCGGGACTTAGCCGGATATATCACTAGCACGAA
18894 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAG-CCGGATATATCACTAGCACGAA
18934 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAG-CCGGATATATCACTAGCACGAA
18973 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAG-CCGGATATATCACTAGCACGAA
*
19012 TGCTCTTCGGGACTTAGCCAAGATATATCACT
1 TGCTCTTCGGGACTTAGCC-GGATATATCACT
19044 CTCAATTCTC
Statistics
Matches: 279, Mismatches: 32, Indels: 44
0.79 0.09 0.12
Matches are distributed among these distances:
29 2 0.01
30 9 0.03
31 1 0.00
32 5 0.02
33 2 0.01
34 4 0.01
35 3 0.01
36 2 0.01
37 6 0.02
38 22 0.08
39 151 0.54
40 72 0.26
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
TGCTCTTCGGGACTTAGCCGGATATATCACTAGCACGAA
Found at i:18879 original size:66 final size:67
Alignment explanation
Indices: 18757--18893 Score: 208
Period size: 66 Copynumber: 2.1 Consensus size: 67
18747 GAATGCTCTT
*
18757 CGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAACCTGGATATATCACTA
1 CGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAACCTGGATATATCA-TA
18822 GCA
65 GCA
* *
18825 CGAACTT-GTCCGGAT-TATCACTAGCACGAATGCTCTTCGGAGACTTAGCC-GGATATATCATA
1 CGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG-GACTTAACCTGGATATATCATA
18887 GCA
65 GCA
18890 CGAA
1 CGAA
18894 TGCTCTTCGG
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
65 9 0.14
66 34 0.52
67 15 0.23
68 7 0.11
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (67 bp):
CGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAACCTGGATATATCATAG
CA
Found at i:18968 original size:79 final size:79
Alignment explanation
Indices: 18834--19043 Score: 356
Period size: 79 Copynumber: 2.7 Consensus size: 79
18824 ACGAACTTGT
18834 CCGGAT-TATCACTAGCACGAATGCTCTTCGGAGACTTAG-CCGGATATATCA-TAGCACGAATG
1 CCGGATATATCACTAGCACGAATGCTCTTCGG-GACTTAGCCCGGATATATCACTAGCACGAATG
18896 CTCTTCGGGACTTAGC
65 CTCTTC-GGACTTAGC
18912 CCGGATATATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAATGC
1 CCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
18976 TCTTCGGACTTAGC
66 TCTTCGGACTTAGC
**
18990 CCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCAAGATATATCACT
1 CCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
19044 CTCAATTCTC
Statistics
Matches: 126, Mismatches: 2, Indels: 7
0.93 0.01 0.05
Matches are distributed among these distances:
77 7 0.06
78 58 0.46
79 61 0.48
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
TCTTCGGACTTAGC
Found at i:18980 original size:184 final size:183
Alignment explanation
Indices: 18671--19011 Score: 526
Period size: 184 Copynumber: 1.9 Consensus size: 183
18661 CGAGCATGAT
* *
18671 TGCTCTTCGGGACCTAGCCCGGATATACCACGCAGCAGAATGCTCTTCGGGTTTAGCACGGATAT
1 TGCTCTTCGGGACCTAGCCCGGATATACCAAGCAGCAGAATGCTCTTCGGGCTTAGCACGGATAT
*
18736 ATCACTAGCACGAATGCTCTTCGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGA
66 ATCACTAGCACGAATGCTCTTCGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GGA
* *
18801 TTTAACCTGGATATATCACTAGCACGAACTTGTCCGGATTATCACTAGCACGAA
130 CTTAACCCGGATATATCACTAGCACGAACTTGTCCGGATTATCACTAGCACGAA
* * *
18855 TGCTCTTCGGAGACTTAG-CCGGATATATCATAGCA-C-GAATGCTCTTCGGGACTTAGCCCGGA
1 TGCTCTTCGG-GACCTAGCCCGGATATACCA-AGCAGCAGAATGCTCTTCGGG-CTTAGCACGGA
* *
18917 TATATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCG
63 TATATCACTAGCACGAATGCTCTTCGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
*
18982 GACTTAGCCCGGATATATCACTAGCACGAA
128 GACTTAACCCGGATATATCACTAGCACGAA
19012 TGCTCTTCGG
Statistics
Matches: 143, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
183 42 0.29
184 92 0.64
185 9 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (183 bp):
TGCTCTTCGGGACCTAGCCCGGATATACCAAGCAGCAGAATGCTCTTCGGGCTTAGCACGGATAT
ATCACTAGCACGAATGCTCTTCGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAC
TTAACCCGGATATATCACTAGCACGAACTTGTCCGGATTATCACTAGCACGAA
Found at i:19088 original size:12 final size:13
Alignment explanation
Indices: 19061--19089 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
19051 CTCATGTACA
19061 CATACACATATAG
1 CATACACATATAG
19074 CATACACAT-TAG
1 CATACACATATAG
19086 CATA
1 CATA
19090 TCATTTACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.45, C:0.24, G:0.07, T:0.24
Consensus pattern (13 bp):
CATACACATATAG
Found at i:20304 original size:37 final size:37
Alignment explanation
Indices: 20254--20332 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
20244 TTATTACGAA
* * *
20254 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
20291 GTCTTACCCGGACAAAATCCCCACGCGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
20328 GTCTT
1 GTCTT
20333 TAGAGCTCGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:20529 original size:47 final size:47
Alignment explanation
Indices: 20451--20919 Score: 731
Period size: 47 Copynumber: 9.9 Consensus size: 47
20441 CCCTTCGGGA
* * * * * * *
20451 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
20498 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20545 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20592 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
20639 ATTATCACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
20686 CTTATCACATATATACACTTTCGCATTCATCACTTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
20733 CTTACCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
20780 CTTATCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
20827 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
20876 CTTATCACATATATATACACTTTAACATTCATCACATCGGCCAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCAT
20920 ATATATACAC
Statistics
Matches: 392, Mismatches: 28, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
47 311 0.79
49 81 0.21
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:20612 original size:94 final size:94
Alignment explanation
Indices: 20451--21129 Score: 872
Period size: 94 Copynumber: 7.3 Consensus size: 94
20441 CCCTTCGGGA
* * * * * * * * *
20451 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGACCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
20516 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
20545 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
20610 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
20639 ATTATCACATATATACACTTTCACATTCATCACATCAGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
20704 TTTCGCATTCATCACTTCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
20733 CTTACCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
20798 TTTCACATTCATCACATCGGCCGTTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
20827 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
20892 ACACTTTAACATTCATCACATCGGCCA-TA---
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
20921 -TATAT-ACACT-T-T-CACATTCATCA--CATCGGCCGTTAGGCC-TTA-TCGC--AT---ATA
1 CT-TATCACA-TATATACACTTTCA-CATTCATC--AC-ATCGGCCATTAGGC-CTTATCACATA
20972 TATACACTTTCACATTCATCACATCGGCCATTAGGC
59 TATACACTTTCACATTCATCACATCGGCCATTAGGC
21008 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21073 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
21104 CTTATCAGATATATATACACTTTCAC
1 CTTATC--ACATATATACACTTTCAC
21130 GTATACACAC
Statistics
Matches: 513, Mismatches: 39, Indels: 64
0.83 0.06 0.10
Matches are distributed among these distances:
83 32 0.06
84 2 0.00
87 3 0.01
88 9 0.02
89 9 0.02
90 15 0.03
91 15 0.03
92 9 0.02
93 9 0.02
94 270 0.53
96 106 0.21
97 2 0.00
98 32 0.06
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:20705 original size:141 final size:141
Alignment explanation
Indices: 20451--21129 Score: 979
Period size: 141 Copynumber: 4.8 Consensus size: 141
20441 CCCTTCGGGA
* * * * * * * * *
20451 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGACCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
20516 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
20581 GGCCATTAGGC
131 GGCCATTAGGC
*
20592 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * * *
20657 TTTCACATTCATCACATCAGCTATTAGGCCTTATCACATATATACACTTTCGCATTCATCACTTC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
20722 GGCCATTAGGC
131 GGCCATTAGGC
* *
20733 CTTACCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
20798 TTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
*
20863 TCGGCCGTTAGGC
129 TCGGCCATTAGGC
*
20876 CTTATCACATATATATACACTTTAACATTCATCACAT----C----GGCC--AT---ATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
20928 ACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCGCATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CACATATATACACTTTCACATTCATCA
20993 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
21008 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
21073 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAGATATATATACACTTTCAC
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATC--ACATATATACACTTTCAC
21130 GTATACACAC
Statistics
Matches: 487, Mismatches: 30, Indels: 38
0.88 0.05 0.07
Matches are distributed among these distances:
132 118 0.24
134 2 0.00
135 2 0.00
136 1 0.00
137 4 0.01
140 4 0.01
141 224 0.46
142 2 0.00
143 44 0.09
145 86 0.18
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:20926 original size:34 final size:34
Alignment explanation
Indices: 20883--20951 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
20873 GGCCTTATCA
20883 CATATATATACACTTTAACATTCATCACATCGGC
1 CATATATATACACTTTAACATTCATCACATCGGC
*
20917 CATATATATACACTTTCACATTCATCACATCGGC
1 CATATATATACACTTTAACATTCATCACATCGGC
20951 C
1 C
20952 GTTAGGCCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.33, C:0.29, G:0.06, T:0.32
Consensus pattern (34 bp):
CATATATATACACTTTAACATTCATCACATCGGC
Found at i:20927 original size:83 final size:83
Alignment explanation
Indices: 20834--21002 Score: 320
Period size: 83 Copynumber: 2.0 Consensus size: 83
20824 GGCCTTATCA
20834 CATATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATATACACTTT
1 CATATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATATACACTTT
20899 AACATTCATCACATCGGC
66 AACATTCATCACATCGGC
*
20917 CATATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCGCATATATATACACTTT
1 CATATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATATACACTTT
*
20982 CACATTCATCACATCGGC
66 AACATTCATCACATCGGC
21000 CAT
1 CAT
21003 TAGGCCTTAT
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 84 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (83 bp):
CATATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATATACACTTT
AACATTCATCACATCGGC
Found at i:20971 original size:49 final size:49
Alignment explanation
Indices: 20917--21129 Score: 369
Period size: 49 Copynumber: 4.4 Consensus size: 49
20907 TCACATCGGC
*
20917 CATATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCG
1 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCG
*
20966 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCG
21015 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--
1 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCG
*
21062 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAG
1 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC-G
21112 -ATATATATACACTTTCAC
1 CATATATATACACTTTCAC
21130 GTATACACAC
Statistics
Matches: 157, Mismatches: 4, Indels: 6
0.94 0.02 0.04
Matches are distributed among these distances:
47 46 0.29
49 111 0.71
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCG
Found at i:21094 original size:96 final size:97
Alignment explanation
Indices: 20917--21129 Score: 383
Period size: 96 Copynumber: 2.2 Consensus size: 97
20907 TCACATCGGC
* *
20917 CATATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCGCATATATATACACTTT
1 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC-CACATATATACACTTT
20982 CACATTCATCACATCGGCCATTAGGCCTTATCA
65 CACATTCATCACATCGGCCATTAGGCCTTATCA
21015 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT-CACATATATACACTTTC
1 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCCACATATATACACTTTC
21079 ACATTCATCACATCGGCCATTAGGCCTTATCA
66 ACATTCATCACATCGGCCATTAGGCCTTATCA
*
21111 GATATATATACACTTTCAC
1 CATATATATACACTTTCAC
21130 GTATACACAC
Statistics
Matches: 112, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
96 66 0.59
98 46 0.41
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (97 bp):
CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCA
Found at i:29735 original size:24 final size:24
Alignment explanation
Indices: 29708--29823 Score: 160
Period size: 24 Copynumber: 4.8 Consensus size: 24
29698 TTGACATTCC
* *
29708 AATCCGCACACTTAGTGCCATATA
1 AATCCGCACACATAGTGCCATACA
*
29732 AATCTGCACACATAGTGCCATACA
1 AATCCGCACACATAGTGCCATACA
* *
29756 ATTCCGCACACATAGTGTCATACA
1 AATCCGCACACATAGTGCCATACA
*
29780 AGTCCGCACACATAGTGCCATACA
1 AATCCGCACACATAGTGCCATACA
* *
29804 AGTTCGCACACATAGTGCCA
1 AATCCGCACACATAGTGCCA
29824 AAGTCATTTC
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 83 1.00
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.22
Consensus pattern (24 bp):
AATCCGCACACATAGTGCCATACA
Found at i:29745 original size:48 final size:48
Alignment explanation
Indices: 29665--29823 Score: 153
Period size: 48 Copynumber: 3.3 Consensus size: 48
29655 ATGTTAGCCA
* * * * * *
29665 GCACACATAGTGCCTTAGC-AATTCACATACATATTGACATTCCAA-TCC
1 GCACACATAGTGCCATA-CAAATCCGCACACATAGTGACA-TACAATTCC
* * * *
29713 GCACACTTAGTGCCATATAAATCTGCACACATAGTGCCATACAATTCC
1 GCACACATAGTGCCATACAAATCCGCACACATAGTGACATACAATTCC
* * *
29761 GCACACATAGTGTCATACAAGTCCGCACACATAGTGCCATACAAGTT-C
1 GCACACATAGTGCCATACAAATCCGCACACATAGTGACATACAA-TTCC
29809 GCACACATAGTGCCA
1 GCACACATAGTGCCA
29824 AAGTCATTTC
Statistics
Matches: 92, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
47 4 0.04
48 86 0.93
49 2 0.02
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.23
Consensus pattern (48 bp):
GCACACATAGTGCCATACAAATCCGCACACATAGTGACATACAATTCC
Found at i:29769 original size:72 final size:72
Alignment explanation
Indices: 29665--29823 Score: 189
Period size: 72 Copynumber: 2.2 Consensus size: 72
29655 ATGTTAGCCA
* * * * *
29665 GCACACATAGTGCCTTAGCAATTCACATACATATTGACATTCCAA-TCCGCACACTTAGTGCCAT
1 GCACACATAGTGCCATAGCAATTCACACACATAGTGACA-TACAAGTCCGCACACATAGTGCCAT
*
29729 ATAAA-TC
65 ACAAATTC
* *
29736 TGCACACATAGTGCCATA-CAATTCCGCACACATAGTGTCATACAAGTCCGCACACATAGTGCCA
1 -GCACACATAGTGCCATAGCAATT-CACACACATAGTGACATACAAGTCCGCACACATAGTGCCA
*
29800 TACAAGTTC
64 TACAAATTC
29809 GCACACATAGTGCCA
1 GCACACATAGTGCCA
29824 AAGTCATTTC
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
71 9 0.12
72 64 0.85
73 2 0.03
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.23
Consensus pattern (72 bp):
GCACACATAGTGCCATAGCAATTCACACACATAGTGACATACAAGTCCGCACACATAGTGCCATA
CAAATTC
Found at i:35808 original size:19 final size:19
Alignment explanation
Indices: 35786--35824 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
35776 TTTACTTTTT
35786 CCACCAATGCTATGAAATC
1 CCACCAATGCTATGAAATC
*
35805 CCACCAATGCTGTGAAATC
1 CCACCAATGCTATGAAATC
35824 C
1 C
35825 TGCTCCCTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.33, G:0.13, T:0.21
Consensus pattern (19 bp):
CCACCAATGCTATGAAATC
Found at i:38009 original size:39 final size:40
Alignment explanation
Indices: 37816--38025 Score: 221
Period size: 40 Copynumber: 5.3 Consensus size: 40
37806 CTAACGGGAT
* * * *
37816 TAAGTCCCGAAGACATTTGTGCTAGTGATTA-ATTCCAGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
* * *
37856 TAAGTCTCGAAGGCATTTGTGGGAGTTACTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
*
37896 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
* *
37936 TAAGTCCCGAAGGCATTTGTGCTAGTGACCATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
* * * ** *
37976 TAAGACCCGACGGC-CTTGTGCGAGTGGTTATATCC-GGA
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
*
38014 TAAATCCCGAAG
1 TAAGTCCCGAAG
38026 ATACTTGGGT
Statistics
Matches: 146, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
38 11 0.08
39 16 0.11
40 118 0.81
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
Found at i:43342 original size:27 final size:27
Alignment explanation
Indices: 43312--43488 Score: 153
Period size: 27 Copynumber: 6.6 Consensus size: 27
43302 ATATTGAGTC
* *
43312 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
43339 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
43366 CGCACACTTA-TGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
43393 CGCCACACTTAGTGCCGCATGGTC-ATT
1 CG-CACACTTAGTGCTACATAATCAACT
* * **
43420 CACACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
43447 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
43474 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43489 GTACAATTTA
Statistics
Matches: 123, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
26 27 0.22
27 78 0.63
28 9 0.07
29 9 0.07
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Done.