Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3670
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46366
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.32
Found at i:796 original size:40 final size:40
Alignment explanation
Indices: 613--789 Score: 181
Period size: 40 Copynumber: 4.5 Consensus size: 40
603 AATGATGTCC
* * * * *
613 GGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGACCATATCTG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCG
* * *
652 GACTAAGAT-CCGAA-GCATTTGT-CGAGATACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
690 GGCTAAG-CCC-AAGGCATTTGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
728 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
*
768 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
790 AACGAGTAGC
Statistics
Matches: 116, Mismatches: 14, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
36 2 0.02
37 10 0.09
38 34 0.29
39 12 0.10
40 56 0.48
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:810 original size:78 final size:77
Alignment explanation
Indices: 661--821 Score: 170
Period size: 78 Copynumber: 2.1 Consensus size: 77
651 GGACTAAGAT
* **
661 CCGAA-GCATTTGTCGAGATACTAATTCCGGGCTAAGCCCAAGGCATTTGTGCGAGTTACTAAAT
1 CCGAAGGCATTTGTCGAGATACTAATACCGGGCTAAGCCCAAGGCATTTGAACGAGTTACTAAAT
*
725 CCGGGTTAAGTC
66 CCGGGTTAAATC
* *
737 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGT-CGAGATACTAAT-ACCGGGCTAAG-CCC-AAGGCATTTGAACGAGTTA-C
* *
800 TATAT-C-GGTTAAATT
61 TAAATCCGGGTTAAATC
815 CCGAAGG
1 CCGAAGG
822 TACATGATTT
Statistics
Matches: 71, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
76 5 0.07
77 10 0.14
78 31 0.44
79 6 0.08
80 19 0.27
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (77 bp):
CCGAAGGCATTTGTCGAGATACTAATACCGGGCTAAGCCCAAGGCATTTGAACGAGTTACTAAAT
CCGGGTTAAATC
Found at i:6633 original size:48 final size:46
Alignment explanation
Indices: 6558--6678 Score: 145
Period size: 46 Copynumber: 2.6 Consensus size: 46
6548 TTATCAACGC
* * * * *
6558 CATGTCCCAGACAGGTCTTACACTAGCTTGTCTATCGCGA-GACTGATG
1 CATGTCCCAGACATGTCTTACACTAGC-T-CCCATCGCAATG-CCGATG
* *
6606 CATGTCCCAGACATGTCTTACATTAGCTCCCATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCCCATCGCAATGCCGATG
6652 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
6679 ACACAATCAT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 37 0.58
47 2 0.03
48 25 0.39
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCCCATCGCAATGCCGATG
Found at i:10798 original size:34 final size:34
Alignment explanation
Indices: 10755--10823 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
10745 ATTCAATACA
10755 AAGGCGAGGTAAGCCTCGCACCCTTTTCTTAAAT
1 AAGGCGAGGTAAGCCTCGCACCCTTTTCTTAAAT
10789 AAGGCGAGGTAAGCCTCGCACCCTTTTCTTAAAT
1 AAGGCGAGGTAAGCCTCGCACCCTTTTCTTAAAT
10823 A
1 A
10824 TCTCTCTGCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (34 bp):
AAGGCGAGGTAAGCCTCGCACCCTTTTCTTAAAT
Found at i:12485 original size:195 final size:194
Alignment explanation
Indices: 12146--12534 Score: 724
Period size: 195 Copynumber: 2.0 Consensus size: 194
12136 CCCTGATGGT
12146 ATTTTCCAACCAAAACTCGGCCCTTTCTAGGTCATCATCCATATTGGCCCGAAATTCTTCGACCC
1 ATTTTCCAACCAAAACTCGGCCCTTTCTAGGTCATCATCCATATTGGCCCGAAATTCTTCGACCC
12211 CATTTTACGAATTCTATCTACTGGAGGTTTCTCTCTCCTAGCTATCTTTACCACTTGAGGAGCTA
66 CATTTTACGAATTCTATCTACTGGAGGTTTCTCTCTCCTAGCTATCTTTACCACTTGAGGAGCTA
*
12276 TATCAACAGGTTAAGGAATTGGGGGAGTTAGGGGAGGTGTTGTGTTCGGATTAGCACGAACAAA
131 TATCAACAGGTTAAGGAATTGGGGGAGTTAGGGGAGGTGTAGTGTTCGGATTAGCACGAACAAA
*
12340 ATTTTCCAACCAAAACTCGGCCCTTTCTAGGTCATCATCCATATTGGCCCGAAATTCTTCGGCCC
1 ATTTTCCAACCAAAACTCGGCCCTTTCTAGGTCATCATCCATATTGGCCCGAAATTCTTCGACCC
* *
12405 CATGTTTACGGATTCTGTCTACTGGAGGTTTCTCTCTCCTAGCTATCTTTACCACTTGAGGAGCT
66 CAT-TTTACGAATTCTATCTACTGGAGGTTTCTCTCTCCTAGCTATCTTTACCACTTGAGGAGCT
*
12470 ATATCAACGGGTTAAGGAATTGGGGGAGTTAGGGGAGGTGTAGTGTTCGGATTAGCACGAACAAA
130 ATATCAACAGGTTAAGGAATTGGGGGAGTTAGGGGAGGTGTAGTGTTCGGATTAGCACGAACAAA
12535 CTCCATGTAC
Statistics
Matches: 189, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
194 67 0.35
195 122 0.65
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (194 bp):
ATTTTCCAACCAAAACTCGGCCCTTTCTAGGTCATCATCCATATTGGCCCGAAATTCTTCGACCC
CATTTTACGAATTCTATCTACTGGAGGTTTCTCTCTCCTAGCTATCTTTACCACTTGAGGAGCTA
TATCAACAGGTTAAGGAATTGGGGGAGTTAGGGGAGGTGTAGTGTTCGGATTAGCACGAACAAA
Found at i:14373 original size:49 final size:49
Alignment explanation
Indices: 14299--14424 Score: 146
Period size: 49 Copynumber: 2.6 Consensus size: 49
14289 AGATGTCGAC
* *
14299 GCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAG-GCCAAT
1 GCCATGTCCCAGACA-AGTCTTACACTGGCTCTCATATAGC-AGTGCCAAT
* * * * * * *
14349 GTCATGTCCCAAACAAGTCTTACACTAGCTCTCATCTATCAGTGTCGAT
1 GCCATGTCCCAGACAAGTCTTACACTGGCTCTCATATAGCAGTGCCAAT
14398 GCCATGTCCCAGACAAGTCTTACACTG
1 GCCATGTCCCAGACAAGTCTTACACTG
14425 ACACACGACA
Statistics
Matches: 63, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
48 2 0.03
49 48 0.76
50 13 0.21
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (49 bp):
GCCATGTCCCAGACAAGTCTTACACTGGCTCTCATATAGCAGTGCCAAT
Found at i:14609 original size:46 final size:48
Alignment explanation
Indices: 14299--14610 Score: 196
Period size: 46 Copynumber: 6.6 Consensus size: 48
14289 AGATGTCGAC
* * * * *
14299 GCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAGGCCAAT
1 GCCATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTA-AGAGGCCGAT
* * * ** *
14349 GTCATGTCCCAAACAAGTCTTACACTAGCTCTCATCTATCAGTGTCGAT
1 GCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTAAGAG-GCCGAT
* * * * * *
14398 GCCATGTCCCAGACAAGTCTTACACT-G-ACACA-CGACA-A-GCTGAC
1 GCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTA-AGAGGCCGAT
* * * ** *
14442 GCCATGTCCCAGACAGGTCTTACACTAGATTGTCTATC-GCGAGGCTGAT
1 GCCATGTCCCAGACATGTCTTACACTAG-CTCTC-ATCTAAGAGGCCGAT
* * * * * *
14491 G-CATGTCCCAAACATGTCTTACACTAACTCCCATCTCA-ATGACGAT
1 GCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTAAGAGGCCGAT
* * * *
14537 GCC-TGTCCCAGACATATCTTCCACTAGCTCTCATCT-TGTGGCCGAT
1 GCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTAAGAGGCCGAT
14583 G-CATGTCCCAGACATGTCTTACACTAGC
1 GCCATGTCCCAGACATGTCTTACACTAGC
14611 ACACAATCAC
Statistics
Matches: 201, Mismatches: 48, Indels: 30
0.72 0.17 0.11
Matches are distributed among these distances:
44 28 0.14
45 2 0.01
46 69 0.34
47 7 0.03
48 28 0.14
49 54 0.27
50 13 0.06
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (48 bp):
GCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTAAGAGGCCGAT
Found at i:19380 original size:48 final size:48
Alignment explanation
Indices: 19125--19588 Score: 330
Period size: 48 Copynumber: 9.9 Consensus size: 48
19115 ATGTGAGTAT
* * * * * * *
19125 TGAGATCTCATGTAAGACCATGTATGGGACATGGAATCGGCATCAAGA
1 TGAGATCTCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
* * * *
19173 TGTGATCTCATATAAGACCATATCAGGGATATGGC-TTCGGCATCGTTA
1 TGAGATCTCATGTAAGACCATATCTGGGATATGGCATT-GGCATCGATA
* * * * *
19221 AGTGATTTCATGTAAGACCATGTCTGGGACATGGCATT-G-AT--A-A
1 TGAGATCTCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
* * * * *
19264 -GAGATCCCGTGTAAGATCATATCTGGGATATGGCATCGGCATCAATA
1 TGAGATCTCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
* *
19311 TGAGATCCCATGTAACACCATATCTGGGATATGGCATTGGCATCGATA
1 TGAGATCTCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
* * ** * *
19359 AGAGATCTCGTGTAAGACCATATCTAAGATAAGGCATCGGCATC-AGTA
1 TGAGATCTCATGTAAGACCATATCTGGGATATGGCATTGGCATCGA-TA
* * *
19407 TGAGATCCCATATAAGACCATATCTGGGATATGGTATTGGCATCGATA
1 TGAGATCTCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
* * * * ** * *
19455 TGAGGTC-C-TGTTTAAGACCATGTCTAGGACATGGCATCAGCACCGTTA
1 TGAGATCTCATG--TAAGACCATATCTGGGATATGGCATTGGCATCGATA
* * * * * *
19503 TGAGA-CTTCGTATAAGACCATAGCTGGG--CT-G--TTGGCATCAATG
1 TGAGATC-TCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
* * *
19546 TGAGATCCCATGTAAGACCACATCTGGGACATGGCATTGGCAT
1 TGAGATCTCATGTAAGACCATATCTGGGATATGGCATTGGCAT
19589 ATTTTCATGT
Statistics
Matches: 319, Mismatches: 76, Indels: 42
0.73 0.17 0.10
Matches are distributed among these distances:
42 29 0.09
43 29 0.09
44 3 0.01
45 2 0.01
46 6 0.02
47 6 0.02
48 239 0.75
49 4 0.01
50 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (48 bp):
TGAGATCTCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
Found at i:19395 original size:138 final size:143
Alignment explanation
Indices: 19125--19458 Score: 365
Period size: 138 Copynumber: 2.4 Consensus size: 143
19115 ATGTGAGTAT
* * * * * * * *
19125 TGAGATCTCATGTAAGACCATGTATGGGACATGGAATCGGCATCAAGATGTGATCTCATATAAGA
1 TGAGATCCCATGTAAGACCATATCTGGGATATGGAATCGGCATCAATATGAGATCCCATATAACA
* * * * ** *
19190 CCATATCAGGGATATGGCTTCGGCATCGTTAAGTGATTTCATGTAAGACCATGTCTGGGACATGG
66 CCATATCAGGGATATGGCTTCGGCATCGATAAGAGATCTCATGTAAGACCATATCTAAGACAAGG
*
19255 CAT-TG-AT-A-A
131 CATCGGCATCAGA
* * * *
19264 -GAGATCCCGTGTAAGATCATATCTGGGATATGGCATCGGCATCAATATGAGATCCCATGTAACA
1 TGAGATCCCATGTAAGACCATATCTGGGATATGGAATCGGCATCAATATGAGATCCCATATAACA
* * *
19328 CCATATCTGGGATATGGCATT-GGCATCGATAAGAGATCTCGTGTAAGACCATATCTAAGATAAG
66 CCATATCAGGGATATGGC-TTCGGCATCGATAAGAGATCTCATGTAAGACCATATCTAAGACAAG
19392 GCATCGGCATCAGTA
130 GCATCGGCATCAG-A
* * * *
19407 TGAGATCCCATATAAGACCATATCTGGGATATGGTATTGGCATCGATATGAG
1 TGAGATCCCATGTAAGACCATATCTGGGATATGGAATCGGCATCAATATGAG
19459 GTCCTGTTTA
Statistics
Matches: 159, Mismatches: 29, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
138 107 0.67
139 3 0.02
140 2 0.01
141 1 0.01
143 1 0.01
144 45 0.28
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27
Consensus pattern (143 bp):
TGAGATCCCATGTAAGACCATATCTGGGATATGGAATCGGCATCAATATGAGATCCCATATAACA
CCATATCAGGGATATGGCTTCGGCATCGATAAGAGATCTCATGTAAGACCATATCTAAGACAAGG
CATCGGCATCAGA
Found at i:21038 original size:55 final size:55
Alignment explanation
Indices: 20908--21042 Score: 200
Period size: 55 Copynumber: 2.5 Consensus size: 55
20898 CTGACTTATC
* * * *
20908 AACACAGCCATGGAACACGCCTGTGCTGCCTGCCCGTGGATGAAACTATCATTTT
1 AACACGGCCATGGAACACGCCCGTGCTGCCTGCCCATGGACGAAACTATCATTTT
*
20963 AACACGGCCATGGAAAACGCCCGTGCTGCCTGCCCATGGACGAAACTATCATTTT
1 AACACGGCCATGGAACACGCCCGTGCTGCCTGCCCATGGACGAAACTATCATTTT
*
21018 AACACGGCCAT-GATGCACGCCCGTG
1 AACACGGCCATGGA-ACACGCCCGTG
21043 TGGCCTACCC
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 2 0.03
55 70 0.97
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.20
Consensus pattern (55 bp):
AACACGGCCATGGAACACGCCCGTGCTGCCTGCCCATGGACGAAACTATCATTTT
Found at i:22336 original size:46 final size:46
Alignment explanation
Indices: 22250--22367 Score: 161
Period size: 46 Copynumber: 2.6 Consensus size: 46
22240 TTCAAGGAAC
* * *
22250 ACCCGTCCGGGCTAGATTCCTT--T-CCATATTTGAGATCATGGATT
1 ACCCGTCCGGGCTA-AATCCTTACTGCAATATTTGAGACCATGGATT
*
22294 ACCCGTCTGGGCTAAATCCTTACTGCAATATTTGAGACCATGGATT
1 ACCCGTCCGGGCTAAATCCTTACTGCAATATTTGAGACCATGGATT
*
22340 ACCCGTCCGGGCTAAATCCTTTCTGCAA
1 ACCCGTCCGGGCTAAATCCTTACTGCAA
22368 CACATGCAAG
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
43 6 0.09
44 13 0.20
45 1 0.02
46 45 0.69
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (46 bp):
ACCCGTCCGGGCTAAATCCTTACTGCAATATTTGAGACCATGGATT
Found at i:32452 original size:23 final size:23
Alignment explanation
Indices: 32399--32458 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
32389 CATAATTTAC
*
32399 AAATAAAATATATACAAATCATA
1 AAATAAAATATATAAAAATCATA
**
32422 TCAT-AAATAATATAAAAAT-ATA
1 AAATAAAAT-ATATAAAAATCATA
*
32444 AAATAAAATCTATAA
1 AAATAAAATATATAA
32459 TATATATATA
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
22 14 0.48
23 15 0.52
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (23 bp):
AAATAAAATATATAAAAATCATA
Found at i:35140 original size:207 final size:207
Alignment explanation
Indices: 34367--35249 Score: 1329
Period size: 207 Copynumber: 4.3 Consensus size: 207
34357 GTAAAATCTA
* * *
34367 CTATGTCTTCGATTTGTTCCTTGTAAACACAATAATGCCAAATCATCTTGGATC-TGCTTCAGTC
1 CTATGTCTTCGATTTGTTCCTTGTAAGCACAATGATGCCAAATCATCTTGGATCTTGCTTCAGTA
* * *
34431 TAATCATCTGTAGGCCAGATCTGCTATGTGTCTCCTCTCCGTCGAATATGGAGACGCCAAACTTC
66 TAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTC
*
34496 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGCAAGCACGTGA
131 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
34561 AAGCCAAATCAG
196 AAGCCAAATCAG
* *
34573 CTATGTCTTCGATTTGTTCCTTATAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTA
1 CTATGTCTTCGATTTGTTCCTTGTAAGCACAATGATGCCAAATCATCTTGGATCTTGCTTCAGTA
* *
34638 TAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGAAGACGCCAAACTTT
66 TAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTC
* * *
34703 G-TTTGTTCTCTGACAATACAGTGATGCCAAATCATCTTATATTTGCTTTATCGTAAGCACGTGA
131 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
*
34767 AAGCCAAATCAT
196 AAGCCAAATCAG
* * *
34779 CTATGAT-TTTGATTTGTTCCTTGTAAACACAATGATGCCAAATCATC-----TC-TGTTTCAGT
1 CTATG-TCTTCGATTTGTTCCTTGTAAGCACAATGATGCCAAATCATCTTGGATCTTGCTTCAGT
* *
34837 CTAATCATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTT
65 ATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTT
* *
34902 CAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTGAGCACGTG
130 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTG
34967 AAAGCCAAATCAG
195 AAAGCCAAATCAG
* *
34980 CTATGTCCTT-GATATGTTCCTTGTAAGCACAATGATGCCAAATTATCTTGGATCTTGCTTCAGT
1 CTATGT-CTTCGATTTGTTCCTTGTAAGCACAATGATGCCAAATCATCTTGGATCTTGCTTCAGT
* * * * * **
35044 ATAAACATCTGAAGGTCAGATCTACTATGTGCCTGCTCTCCATCGAATATGGAGATGGTAAACTT
65 ATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTT
* * *
35109 TGATTTGTTCTCTGACAATACAGATATGCCAAATCATCTTAGATTTGCTTCATCATAAGCACGTG
130 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTG
35174 AAAGCCAAATCAG
195 AAAGCCAAATCAG
* * *
35187 CTATGAT-TTCGATTTTTTCCTTGTAAGCACAAGGATGTCAAATCATCTTGGATCTTGCTTCAG
1 CTATG-TCTTCGATTTGTTCCTTGTAAGCACAATGATGCCAAATCATCTTGGATCTTGCTTCAG
35250 CCAGATCTGC
Statistics
Matches: 611, Mismatches: 53, Indels: 25
0.89 0.08 0.04
Matches are distributed among these distances:
200 71 0.12
201 111 0.18
202 2 0.00
206 165 0.27
207 261 0.43
208 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.33
Consensus pattern (207 bp):
CTATGTCTTCGATTTGTTCCTTGTAAGCACAATGATGCCAAATCATCTTGGATCTTGCTTCAGTA
TAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTC
GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
AAGCCAAATCAG
Done.