genome.fa.s34.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1056
Parameters: 2 7 7 80 10 50 1000
Length:  83308

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1671--1749	29	2.7	29	86	5	106	27	32	15	24	1.95
9775--9853	29	2.7	29	86	5	106	27	32	15	24	1.95
14184--14354	46	3.7	46	86	6	222	40	11	26	22	1.87
15463--15538	40	1.9	40	83	0	98	14	13	32	39	1.85
15542--15584	23	1.9	22	86	13	61	16	2	51	30	1.57
23368--23557	92	2.1	92	86	2	265	35	10	12	42	1.76
26168--26210	21	2.0	22	86	4	61	34	0	20	44	1.52
41707--41739	17	2.0	17	88	5	50	36	18	0	45	1.49
42025--42155	46	2.8	46	88	2	183	19	24	14	41	1.89
46577--46772	53	3.6	53	76	3	158	35	17	25	21	1.95
51852--51934	43	1.9	43	90	0	130	16	25	31	26	1.97
52225--52259	14	2.5	14	90	0	61	37	14	17	31	1.89
54002--54275	41	6.8	41	90	0	410	34	21	24	19	1.96
55242--55266	6	4.2	6	100	0	50	0	48	0	52	1.00
55905--55936	7	4.6	7	100	0	64	62	0	12	25	1.30
56124--56230	41	2.6	40	83	4	133	38	14	20	27	1.91
56225--56253	14	2.1	14	100	0	58	27	0	24	48	1.51
64758--64900	43	3.4	41	77	7	124	28	18	22	30	1.97
72209--72242	5	6.8	5	100	0	68	61	0	0	38	0.96
73331--73357	14	1.9	14	100	0	54	74	0	0	25	0.83
77814--78159	47	7.3	47	92	3	500	32	9	30	27	1.89
78010--78131	22	5.3	22	62	21	61	33	11	29	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80715--80993	40	7.1	40	89	2	393	25	21	27	25	1.99

Tables:   1

The End!