Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3361
Parameters: 2 7 7 80 10 50 1000
Length:  44329

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3673--3857
79
2.3
81
84
7
236
24
22
27
25
2.00
3674--3857
40
4.6
40
83
9
216
24
22
27
25
2.00
3674--3890
79
2.7
79
81
7
201
25
22
27
24
2.00
9903--10060
37
4.3
37
99
0
307
24
31
19
24
1.98
10179--10536
47
7.6
47
92
1
590
28
30
8
32
1.87
10179--10536
143
2.5
141
92
1
590
28
30
8
32
1.87
15224--15417
47
4.1
47
89
0
280
33
10
28
26
1.90
15298--15373
23
3.2
25
62
24
63
28
13
34
23
1.92
15621--15729
37
2.9
37
95
0
191
22
19
31
26
1.98
16768--16826
30
2.0
30
93
0
100
42
20
10
27
1.84
18133--18168
12
3.3
11
88
11
56
75
16
0
8
1.04
18208--18249
22
2.0
21
85
4
57
66
21
4
7
1.35
19423--19482
20
3.0
20
80
7
59
31
1
5
61
1.27
19782--19806
4
6.2
4
100
0
50
24
0
0
76
0.80
21518--21643
23
5.6
23
77
5
78
44
34
4
15
1.68
24489--24558
6
11.0
6
77
11
68
78
5
2
12
1.04
24508--24558
19
2.7
19
80
14
61
78
5
3
11
1.06
28199--28277
37
2.1
37
90
0
122
25
31
18
24
1.98
28396--28763
47
7.7
47
90
3
549
29
29
8
32
1.88
28396--28763
143
2.6
143
91
1
580
29
29
8
32
1.88
28396--28763
96
3.9
94
90
2
549
29
29
8
32
1.88
31645--32104
40
11.6
40
85
5
481
25
28
22
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31645--31986
158
2.1
161
88
2
512
25
28
22
23
1.99
31645--32104
158
2.9
157
83
6
500
25
28
22
24
2.00
33954--34029
34
2.1
38
86
11
108
25
31
18
25
1.97
34153--34534
44
8.5
47
87
10
568
29
30
8
31
1.87
34192--34575
44
8.7
44
85
11
440
30
28
7
32
1.85

Tables:   1

The End!