genome.fa.s35.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3204
Parameters: 2 7 7 80 10 50 1000
Length:  80092

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5037--5201	40	4.2	40	83	9	214	24	19	26	30	1.98
6278--6320	23	1.9	23	95	4	79	30	13	30	25	1.94
12053--12130	24	3.1	25	76	12	72	37	23	6	33	1.80
13132--13219	26	3.2	27	80	9	99	19	22	23	34	1.97
13132--13237	27	3.9	25	81	12	97	20	23	21	33	1.97
29849--29933	40	2.1	40	95	0	152	47	10	9	32	1.70
31781--31827	18	2.6	18	96	0	85	40	10	10	38	1.75
32244--32326	31	2.7	31	94	3	143	28	26	15	28	1.96
32546--32615	25	2.8	25	89	4	97	25	24	25	24	2.00
33547--33675	27	4.7	27	78	9	120	31	7	18	42	1.79
33540--33720	54	3.3	54	77	6	195	32	10	17	39	1.84
33605--33728	27	4.6	27	75	9	110	29	8	20	41	1.82
33606--33761	81	1.9	81	84	5	208	30	10	18	41	1.84
33626--33768	27	5.3	27	71	15	82	30	11	20	37	1.87
33760--33851	27	3.4	27	85	5	123	40	7	23	28	1.82
36201--36292	31	3.0	31	88	4	134	33	23	11	30	1.91
36503--36572	25	2.8	26	84	4	90	25	22	25	25	2.00
37356--37420	27	2.4	27	76	5	69	24	23	16	35	1.95
37478--37570	27	3.4	27	82	11	118	31	8	18	41	1.80
37547--37659	27	4.2	27	79	6	122	29	7	20	42	1.80
37459--37639	54	3.3	53	77	6	175	32	9	17	40	1.83
37557--37699	27	5.3	26	71	14	94	28	11	21	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37691--37782	27	3.4	26	82	8	105	39	6	25	29	1.81
52272--52435	40	4.2	40	90	3	262	23	21	25	29	1.99
52272--52425	78	2.0	77	93	1	263	23	20	25	30	1.99
53513--53547	18	1.9	18	100	0	70	34	14	17	34	1.90
60355--60530	77	2.2	78	92	5	284	25	22	25	26	2.00
60368--60530	39	4.2	40	90	5	262	23	22	25	27	2.00
71959--72012	22	2.5	22	78	0	54	31	29	7	31	1.85
75488--75672	95	2.0	90	83	9	230	37	27	10	24	1.88

Tables:   1

The End!