Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold81
Parameters: 2 7 7 80 10 50 1000
Length:  399999

Tables:   1   2   

This is table  2  of  2  ( 145 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
328657--328682
6
4.3
6
100
0
52
69
30
0
0
0.89
329605--329665
17
3.4
18
76
15
54
50
0
26
22
1.49
330736--330807
29
2.4
29
81
4
81
29
12
12
45
1.78
341140--341164
12
2.1
12
100
0
50
32
0
0
68
0.90
344380--344425
23
2.1
22
84
15
60
21
4
2
71
1.14
352459--352518
23
2.6
23
89
0
102
11
25
35
28
1.91
354021--354066
23
2.0
23
100
0
92
34
13
21
30
1.91
354876--354922
23
2.0
23
84
8
60
46
8
6
38
1.60
357554--357578
7
3.6
7
100
0
50
84
0
0
16
0.63
362098--362147
19
2.9
17
80
19
59
42
0
2
56
1.11
362133--362176
19
2.3
20
81
18
58
34
0
4
61
1.16
362144--362184
18
2.2
20
86
8
59
29
2
4
63
1.28
362181--362220
21
2.0
20
85
5
53
22
5
2
70
1.19
363114--363444
161
2.1
160
98
0
635
28
5
26
39
1.78
363843--363901
19
3.4
19
64
22
56
28
27
1
42
1.65
363839--363905
33
2.0
33
100
0
134
32
23
2
40
1.70
369082--369141
3
20.0
3
100
0
120
33
0
0
66
0.92
371061--371139
39
2.0
39
97
0
149
27
15
24
32
1.95
376498--376528
16
1.9
16
93
0
53
32
19
6
41
1.77
379770--380080
46
7.0
46
84
7
381
22
24
15
38
1.92
379903--380069
83
2.0
84
95
1
300
23
25
16
33
1.96
387265--387392
36
3.5
36
81
7
152
14
14
31
39
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
389761--389886
35
3.5
35
84
3
144
26
15
16
41
1.89
392068--392140
36
2.0
36
97
0
137
15
32
15
36
1.88
396867--396922
17
3.4
16
74
11
60
60
23
0
16
1.35

Tables:   1   2

The End!