genome.fa.s356.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1814
Parameters: 2 7 7 80 10 50 1000
Length:  173247

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1825--1861	19	1.9	19	88	0	56	40	8	2	48	1.47
1824--1861	20	2.0	20	89	5	60	39	7	2	50	1.46
1885--1985	17	5.7	17	66	23	57	43	10	8	36	1.71
1902--1977	39	1.9	38	87	10	109	40	11	9	38	1.74
1902--1979	18	4.1	20	74	12	74	39	11	8	39	1.73
1940--1991	18	2.9	18	86	11	72	50	9	5	34	1.59
2006--2245	17	13.6	17	67	15	96	43	10	16	30	1.81
2019--2245	35	6.5	35	73	13	143	42	10	15	31	1.80
3071--3121	5	10.0	5	79	12	59	0	35	0	64	0.94
4996--5329	76	4.5	74	87	6	453	31	20	16	31	1.95
5344--5515	69	2.5	71	82	7	187	33	22	14	29	1.94
17180--17351	19	9.3	19	64	24	64	42	11	8	38	1.70
17257--17338	19	4.4	18	73	10	67	40	10	10	37	1.76
17178--17338	55	2.8	57	76	13	147	41	11	8	37	1.73
17218--17338	56	2.2	56	81	10	140	41	11	9	37	1.75
17301--17358	19	3.2	18	81	13	57	53	8	5	32	1.54
17362--17505	18	7.9	18	68	16	82	43	9	15	31	1.79
17375--17604	17	12.9	17	66	13	106	42	10	15	31	1.82
17362--17504	35	3.9	37	79	13	163	43	9	15	31	1.79
17519--17560	20	2.1	20	86	8	59	40	9	11	38	1.75
17363--17604	54	4.5	54	71	16	159	42	11	16	30	1.82
17413--17609	17	11.3	17	68	17	111	41	10	15	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18442--18493	5	11.0	5	80	12	65	0	36	0	63	0.95
22632--22673	21	2.0	21	85	4	57	33	0	7	59	1.25
22663--22781	37	3.2	36	68	13	98	44	5	10	40	1.60
23050--23080	10	3.0	10	90	9	53	29	9	29	32	1.89
24314--24359	18	2.6	19	83	10	53	58	8	0	32	1.28
24531--24580	25	2.0	25	84	0	64	48	10	10	32	1.70
25207--25263	3	20.0	3	85	10	84	64	1	0	33	1.04
25207--25262	11	5.0	11	85	10	78	64	1	0	33	1.04
27896--27936	15	2.6	16	81	14	50	63	19	0	17	1.31
40358--40417	25	2.5	24	83	5	77	35	1	0	63	1.05
40416--40463	9	5.2	9	78	12	53	39	0	2	58	1.10
40873--40949	39	2.0	39	94	0	136	31	12	9	46	1.73
58350--58468	59	2.0	59	100	0	238	34	20	11	33	1.89
58933--58992	10	6.0	10	83	11	70	21	10	1	66	1.30
59678--59711	17	1.9	18	94	5	61	26	8	5	58	1.51
59867--59900	13	2.8	13	91	8	54	20	8	0	70	1.13
68234--68286	20	2.5	20	85	11	63	67	0	0	32	0.91
68314--68347	14	2.4	14	85	5	50	44	0	0	55	0.99
77605--77631	2	13.5	2	100	0	54	51	0	48	0	1.00
80174--80198	12	2.1	12	100	0	50	28	16	16	40	1.89
81018--81057	20	2.1	19	85	4	53	45	0	12	42	1.42
86252--86282	3	10.3	3	100	0	62	0	35	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88970--88997	14	2.0	14	100	0	56	50	0	14	35	1.43
89472--89523	15	3.2	15	73	19	50	44	0	1	53	1.11
89563--89593	16	2.0	16	93	6	55	38	0	0	61	0.96
89618--89661	22	2.0	22	90	0	70	45	0	0	54	0.99
96724--96763	15	2.8	14	85	7	53	50	0	0	50	1.00
100792--100853	31	2.0	31	84	6	81	37	8	14	40	1.76
104092--104139	25	1.9	26	87	8	73	66	16	0	16	1.25
104517--104575	29	2.0	29	100	0	118	30	3	38	27	1.73
104779--104831	26	2.0	27	82	10	65	41	1	0	56	1.10
104980--105050	29	2.3	29	83	11	81	42	5	12	39	1.67
104995--105051	29	1.9	30	89	10	91	40	7	12	40	1.70
109313--109346	17	2.0	17	94	0	59	55	0	0	44	0.99
111511--111540	15	1.9	16	93	6	53	63	3	33	0	1.11
116569--116648	38	2.1	38	97	2	153	28	23	10	37	1.87
117083--117158	35	2.2	35	90	2	118	59	18	5	17	1.56
125969--126020	20	2.8	18	78	21	63	44	3	0	51	1.19
125998--126130	58	2.2	60	83	9	157	42	2	6	49	1.39
130258--130343	36	2.4	37	92	5	149	19	16	8	55	1.65
130531--130573	18	2.3	19	80	4	52	27	0	4	67	1.10
131532--131556	13	1.9	13	100	0	50	52	0	8	40	1.31
132712--132791	31	2.5	32	77	8	81	32	11	22	33	1.89
132742--132826	33	2.6	33	76	10	95	34	10	23	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137707--137744	4	9.5	4	94	0	67	26	0	26	47	1.52
142231--142274	23	1.9	23	86	9	63	50	4	2	43	1.35
146644--147363	239	3.0	240	99	0	1424	24	21	27	25	1.99
149671--149862	93	2.1	93	85	5	255	31	11	22	34	1.90
154787--154818	17	1.9	16	93	6	55	18	6	0	75	1.01

Tables:   1

The End!