genome.fa.s357.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3824
Parameters: 2 7 7 80 10 50 1000
Length:  165587

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9290--9972	47	14.3	47	94	1	1141	29	29	8	32	1.86
9290--9972	96	7.2	94	94	2	1141	29	29	8	32	1.86
9290--9974	145	4.8	145	95	1	1197	29	29	8	32	1.86
9960--10000	14	3.1	14	82	6	50	41	19	0	39	1.52
9978--10194	48	4.5	48	88	0	326	32	26	4	35	1.77
9978--10194	96	2.3	96	96	0	398	32	26	4	35	1.77
13030--13140	40	2.8	40	92	0	168	24	29	21	24	1.99
13074--13220	40	3.7	40	88	1	197	31	26	19	23	1.98
13029--13220	80	2.4	81	80	3	210	29	27	19	22	1.98
15286--15894	88	6.9	87	79	4	481	34	21	22	21	1.97
15467--15608	44	3.2	43	68	11	117	33	21	22	21	1.97
15286--15894	175	3.5	173	80	4	614	34	21	22	21	1.97
15511--15657	44	3.3	43	69	11	136	31	23	25	19	1.97
17295--17607	3	105.7	3	70	12	139	30	8	1	59	1.38
19412--20052	3	215.0	3	68	12	254	59	3	8	28	1.42
19893--19963	17	4.3	16	81	13	65	59	2	8	29	1.41
22273--22326	27	2.0	27	96	0	99	48	9	7	35	1.63
31075--31248	5	34.6	5	96	3	323	40	0	0	59	0.97
32340--32396	15	3.9	15	88	2	89	35	0	12	52	1.39
32766--32852	21	4.0	23	80	10	92	14	21	25	37	1.92
37402--37483	5	16.6	5	91	8	125	42	0	0	57	0.98
38751--38807	15	3.9	15	88	2	89	35	0	12	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39179--39265	21	4.0	23	80	10	92	14	21	25	37	1.92
42343--42378	17	2.1	17	100	0	72	52	16	5	25	1.65
44731--44768	17	2.2	18	90	4	60	26	0	2	71	1.00
53930--53968	20	2.1	19	85	9	53	53	17	25	2	1.56
55397--55424	13	2.2	13	100	0	56	53	14	0	32	1.41
63810--63838	13	2.2	13	100	0	58	55	13	0	31	1.39
73460--73560	39	2.6	39	93	0	166	39	23	23	12	1.90
90302--90371	23	3.0	22	78	14	70	21	1	4	72	1.09
90314--90371	13	4.6	13	74	22	61	20	1	3	74	1.06
91623--91663	11	3.7	11	80	0	55	19	14	9	56	1.66
91704--91764	30	2.0	30	83	0	77	26	6	11	55	1.59
94675--94780	52	2.0	52	92	3	178	44	10	13	32	1.77
103767--103826	30	2.0	30	96	0	111	30	3	18	48	1.64
112053--112078	7	3.7	7	100	0	52	0	0	23	76	0.78
116159--116198	19	2.2	19	86	4	55	80	2	15	2	0.93
121194--121249	23	2.4	24	80	14	64	25	7	1	66	1.27
121237--121275	15	2.6	14	80	11	51	38	2	2	56	1.27
125455--125492	12	3.2	12	92	0	67	50	5	26	18	1.68
128558--128583	13	2.0	13	100	0	52	46	0	7	46	1.31
129737--129800	34	1.9	33	83	3	83	42	12	17	28	1.85
131945--132011	34	2.0	34	100	0	134	23	11	29	34	1.91
146123--146160	17	2.2	17	90	9	60	26	44	18	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153712--153831	56	2.1	56	98	0	231	45	9	23	22	1.81
154961--155146	40	4.7	40	86	5	243	24	22	27	25	2.00
155014--155179	80	2.1	79	85	5	219	25	21	27	25	1.99
161602--161721	56	2.1	56	98	0	231	45	9	23	22	1.81
162845--163025	78	2.3	79	84	5	224	24	22	27	25	2.00
162845--163046	40	5.1	40	83	8	229	24	22	27	25	2.00

Tables:   1

The End!