genome.fa.s362.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1833
Parameters: 2 7 7 80 10 50 1000
Length:  113915

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3222--3281	29	2.1	29	81	3	68	41	1	26	30	1.65
4071--4103	15	2.2	15	89	10	50	27	0	18	54	1.44
5215--5367	43	3.6	43	87	3	220	23	18	28	29	1.98
10923--11106	39	4.7	40	82	8	198	25	27	22	25	2.00
10904--11106	40	5.1	40	80	9	220	24	27	22	25	2.00
18430--18558	46	2.8	46	95	0	222	19	21	29	29	1.98
20356--20463	26	4.2	26	91	2	173	36	23	7	33	1.83
29984--30026	18	2.4	19	80	11	54	25	25	37	11	1.90
31328--31376	24	2.0	24	88	0	71	32	10	18	38	1.84
38838--38862	13	1.9	13	100	0	50	48	28	8	16	1.74
41210--41250	16	2.4	17	88	8	57	29	7	7	56	1.54
50852--50999	73	2.0	73	100	0	296	29	21	10	37	1.88
54274--54338	33	2.0	33	87	0	94	26	27	23	23	2.00
55495--56358	431	2.0	432	98	0	1658	39	15	22	22	1.91
56382--56435	28	1.9	28	100	0	108	14	18	24	42	1.88
57989--58077	44	2.0	44	100	0	178	35	8	20	34	1.84
58404--58675	48	5.7	48	77	3	208	28	18	29	23	1.97
58422--58668	96	2.6	96	78	7	232	28	17	29	24	1.97
63279--63356	37	2.1	37	100	0	156	34	7	21	35	1.82
66775--66866	42	2.2	41	86	5	123	28	27	19	25	1.99
66717--66866	41	3.6	41	73	10	135	28	26	21	23	1.99
68674--68881	102	2.0	106	94	3	370	34	9	21	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69334--69553	48	4.6	49	79	10	224	28	18	28	25	1.98
80676--80735	29	2.1	28	84	3	75	33	25	0	41	1.55
86895--86923	12	2.3	13	94	5	51	20	6	6	65	1.40
91562--91699	51	2.8	50	84	5	181	27	20	23	28	1.99
96076--96115	21	1.9	21	85	10	55	30	30	20	20	1.97

Tables:   1

The End!