genome.fa.s364.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1474
Parameters: 2 7 7 80 10 50 1000
Length:  108252

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1667--1867	27	7.4	27	83	5	235	27	14	27	30	1.95
13342--13447	26	4.1	26	92	0	176	33	7	22	35	1.83
29522--29602	43	1.9	42	87	2	117	25	18	24	30	1.98
34138--34231	40	2.3	41	82	7	113	27	17	28	26	1.97
38838--38886	20	2.5	20	83	10	64	55	24	0	20	1.44
40964--41059	43	2.2	43	88	3	149	35	16	13	34	1.88
42985--43153	43	4.0	43	79	7	184	31	26	16	24	1.96
44287--44315	14	2.0	15	93	6	51	51	20	0	27	1.47
49170--49295	28	4.5	28	97	1	236	33	26	11	27	1.92
57182--57307	28	4.5	28	95	1	227	34	26	11	27	1.91
62746--62801	17	3.2	17	73	14	51	12	12	1	73	1.18
62745--62794	5	8.8	6	81	16	54	16	12	0	72	1.13
66432--66515	42	2.0	42	97	0	159	22	14	32	30	1.94
71799--72010	50	4.2	50	90	0	343	42	21	10	25	1.84
74366--74437	36	2.0	36	91	5	119	41	18	15	25	1.89
79409--79666	50	5.2	50	90	0	408	41	20	10	27	1.85
95011--95390	96	4.0	95	92	2	593	28	29	8	33	1.86
95011--95391	145	2.7	145	92	1	635	28	29	8	33	1.86
95011--95390	49	7.9	49	91	2	578	28	29	8	33	1.86
100266--100740	47	10.1	47	95	1	817	31	9	30	28	1.89
100859--100937	37	2.1	37	90	0	122	24	18	31	25	1.98
102783--102885	43	2.4	43	100	0	206	22	15	35	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102867--102940	29	2.6	29	89	4	105	25	16	32	25	1.96
103249--103522	79	3.5	79	82	3	275	24	22	27	25	2.00
103249--103522	40	6.9	40	84	5	281	24	22	27	25	2.00
106916--107377	46	10.1	47	86	9	602	30	9	31	29	1.88
107053--107377	93	3.4	94	85	8	444	30	8	31	28	1.88
107495--107571	36	2.1	37	85	4	104	24	18	31	25	1.97

Tables:   1

The End!