genome.fa.s365.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2393_ERROPOS410500
Parameters: 2 7 7 80 10 50 1000
Length:  99999

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2515--2674	42	3.8	42	78	5	155	30	21	17	30	1.96
2515--2674	84	1.9	83	81	10	191	30	21	17	30	1.96
8803--9010	27	7.7	27	85	5	233	37	18	18	25	1.94
8803--9000	54	3.7	54	89	2	283	37	17	18	26	1.93
8803--9010	81	2.6	81	85	1	274	37	18	18	25	1.94
13669--13750	41	2.0	41	97	0	155	28	14	23	34	1.94
18449--18576	27	4.7	27	89	0	175	36	16	21	25	1.94
18449--18593	27	5.4	27	88	0	164	35	15	22	26	1.94
20715--20802	35	2.5	36	84	1	115	52	10	13	23	1.71
21125--21300	27	6.6	27	86	3	205	42	17	14	25	1.87
21422--21468	17	2.8	17	96	3	87	12	29	29	27	1.93
32071--32157	18	4.9	18	81	1	88	47	17	18	17	1.84
32471--32683	80	2.6	81	81	6	227	43	18	12	24	1.85
32506--32710	54	3.8	54	84	5	238	42	17	12	27	1.85
32506--32683	27	6.6	26	85	8	198	43	18	12	25	1.85
32506--32712	27	7.7	28	84	2	178	42	17	12	27	1.86
37806--37831	12	2.2	12	100	0	52	7	30	0	61	1.24
51388--51448	30	2.0	30	87	0	86	42	3	22	31	1.70
53141--53219	37	2.1	37	90	0	122	25	31	18	24	1.98
53336--53444	49	2.3	47	93	4	182	30	30	7	32	1.85
53714--53771	24	2.5	23	81	16	66	32	5	0	62	1.18
56902--57242	40	8.5	41	84	5	373	24	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57548--57626	29	2.7	29	86	5	106	27	32	15	24	1.95
57608--57753	43	3.4	43	99	0	283	27	35	14	22	1.93
59615--59693	37	2.1	37	90	0	122	25	31	18	24	1.98
59810--59918	49	2.3	47	93	4	182	30	30	7	32	1.85
60189--60246	24	2.5	23	81	16	66	32	5	0	62	1.18
62621--62806	67	2.8	66	82	9	182	31	15	29	23	1.95
69103--69135	17	2.0	17	94	5	59	36	15	0	48	1.45
69421--69694	46	6.0	46	89	0	343	21	22	14	40	1.90
69625--70152	273	1.9	273	96	0	966	28	25	17	28	1.97
71543--71633	47	1.9	47	95	0	164	20	28	9	40	1.85
76678--76708	11	2.8	11	95	0	53	22	0	6	70	1.09
76745--76778	3	11.7	3	87	6	52	29	2	0	67	1.05
80862--81250	27	14.4	27	75	6	268	38	20	10	30	1.85
81013--81250	82	2.9	81	76	9	209	39	18	10	31	1.84
82590--82749	83	1.9	83	88	0	239	36	15	18	29	1.92
96787--96811	5	5.0	5	100	0	50	60	0	0	40	0.97
99145--99267	41	3.0	41	91	0	201	27	26	21	25	1.99
99527--99579	27	2.0	27	88	7	81	33	11	11	43	1.76
99527--99607	28	2.9	28	83	8	87	32	7	14	45	1.73
99540--99874	27	12.4	27	81	10	181	30	8	19	41	1.82
99615--99822	81	2.6	80	77	11	219	29	8	21	39	1.83
99789--99874	26	3.3	26	93	4	138	32	10	18	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99855--99918	26	2.4	26	70	12	67	32	14	17	35	1.89

Tables:   1

The End!