Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold589
Parameters: 2 7 7 80 10 50 1000
Length:  93502

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1269--1307
20
2.0
21
90
10
64
12
2
12
71
1.24
2104--2166
29
2.2
30
83
10
80
47
3
1
47
1.27
5022--5058
6
6.3
6
82
17
51
51
0
0
48
1.00
5027--5058
16
2.1
15
94
5
55
50
0
0
50
1.00
12154--12192
19
2.0
20
90
5
62
28
20
5
46
1.72
21688--21799
44
2.5
44
84
5
138
31
22
17
28
1.97
21897--21993
44
2.2
44
83
3
115
31
18
22
26
1.97
21926--22034
44
2.5
44
77
3
112
33
19
20
27
1.96
22914--22951
16
2.4
16
100
0
76
15
42
34
7
1.76
25249--25304
27
2.1
27
90
6
87
30
10
3
55
1.51
26733--26763
16
2.0
16
93
6
55
51
12
3
32
1.56
27184--27229
22
2.1
22
100
0
92
43
4
13
39
1.63
29689--29722
4
8.5
4
86
0
50
20
0
5
73
1.04
29793--29833
3
13.7
3
84
0
55
26
4
2
65
1.25
32601--32672
35
2.1
35
86
0
99
31
11
15
41
1.82
35144--35170
3
9.0
3
100
0
54
33
0
0
66
0.92
36910--36938
2
14.5
2
100
0
58
51
0
48
0
1.00
42500--42533
17
2.1
17
88
5
52
52
2
0
44
1.16
45243--45311
34
2.0
34
97
0
129
20
27
11
40
1.87
48023--48053
13
2.4
13
94
0
53
22
29
29
19
1.98
48384--48449
32
2.1
32
100
0
132
33
9
12
45
1.73
50116--50315
62
3.2
62
83
0
256
28
25
23
23
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50093--50359
124
2.1
125
84
2
340
28
25
23
22
2.00
54632--54669
17
2.2
17
90
9
60
44
18
2
34
1.64
55164--55206
7
6.4
7
89
5
54
88
6
4
0
0.63
55163--55199
18
2.0
18
89
5
56
86
10
2
0
0.67
55164--55210
12
3.6
13
82
8
51
87
6
6
0
0.68
55440--55492
26
2.1
25
89
6
81
35
3
18
41
1.69
55448--55508
26
2.3
26
91
2
95
22
4
19
52
1.65
56212--56254
16
2.8
15
86
6
59
30
6
0
62
1.21
56357--56388
16
2.0
16
93
0
55
21
21
6
50
1.71
56388--56498
3
36.7
3
69
15
50
34
8
1
55
1.40
56507--56544
12
3.1
13
81
11
53
31
5
0
63
1.17
56590--56650
22
2.8
22
80
2
61
18
6
6
68
1.33
60584--60960
47
7.9
47
94
1
619
32
8
29
29
1.87
60584--60958
192
2.0
188
93
2
633
32
8
29
29
1.87
61079--61157
37
2.1
37
85
0
104
25
17
30
26
1.97
64133--64163
15
2.1
15
100
0
62
54
0
38
6
1.26
67881--67957
31
2.5
30
83
6
84
55
5
3
35
1.40
70278--70341
28
2.3
27
78
10
65
32
12
1
53
1.48
75568--75609
21
2.0
21
86
9
59
52
4
26
16
1.63
79032--79063
14
2.3
14
94
0
55
12
12
3
71
1.25
79394--79463
25
2.8
24
81
16
72
22
8
0
68
1.16
81208--81392
79
2.3
82
84
7
238
25
27
22
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81189--81392
40
5.1
40
82
8
238
25
27
22
25
2.00
82519--82638
56
2.1
56
98
0
231
22
23
9
45
1.81
89085--89266
40
4.6
40
82
5
217
25
26
22
24
2.00
90395--90511
55
2.1
55
93
4
202
22
23
9
45
1.81

Tables:   1

The End!