genome.fa.s367.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold346
Parameters: 2 7 7 80 10 50 1000
Length:  67731

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2611--2778	91	1.8	93	92	2	286	29	29	20	20	1.98
2607--2773	46	3.7	46	75	19	179	28	28	21	20	1.98
3199--3258	30	2.0	30	86	0	84	30	23	10	36	1.87
10924--11131	40	5.2	40	86	4	116	25	27	23	23	2.00
10947--11131	40	4.6	41	89	4	252	24	26	24	24	2.00
24219--24302	28	3.2	28	65	25	83	23	16	29	29	1.96
24171--24360	50	3.8	49	83	1	209	25	19	26	28	1.99
25940--25994	14	3.6	14	78	21	65	30	34	0	34	1.58
25954--26012	19	3.4	19	75	22	74	27	33	0	38	1.57
25939--26012	33	2.2	33	97	0	139	28	33	0	37	1.58
30632--30656	13	1.9	13	100	0	50	16	16	40	28	1.89
32110--32161	26	2.0	26	85	7	70	36	17	19	26	1.94
32292--32348	25	2.3	25	84	0	78	29	1	19	49	1.58
32268--32345	5	15.6	5	70	10	52	33	2	20	43	1.65
35936--36073	25	5.5	25	72	10	95	30	22	19	27	1.98
35936--36065	50	2.6	49	75	7	120	31	21	20	26	1.98
36029--36083	25	2.2	25	80	0	65	32	29	12	25	1.93
36748--36793	23	2.0	23	95	0	83	45	21	6	26	1.76
44986--45231	60	4.1	59	81	9	284	27	15	15	41	1.87
49671--49705	18	2.0	18	88	5	54	68	0	0	31	0.90
49972--50016	22	2.0	22	86	4	63	37	17	6	37	1.76
49995--50040	18	2.5	19	96	3	85	36	15	10	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50382--50655	45	6.1	45	74	8	225	25	27	15	32	1.95
50598--50889	78	3.7	78	89	1	433	25	23	18	33	1.97
50547--51748	364	3.3	365	90	4	1820	25	22	18	32	1.97
50961--51253	78	3.8	78	89	3	430	24	23	18	32	1.97
51325--51573	78	3.2	78	91	3	403	24	22	19	32	1.97
50595--51573	442	2.2	436	83	8	1178	25	23	18	33	1.97
58034--58205	46	3.7	46	79	13	210	21	20	28	29	1.98
58031--58200	93	1.8	92	94	1	304	21	21	29	28	1.98
65567--65739	46	3.7	46	80	13	219	21	21	28	28	1.98
65564--65734	93	1.8	93	96	0	315	21	21	29	28	1.98

Tables:   1

The End!