Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2473
Parameters: 2 7 7 80 10 50 1000
Length:  66056

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4322--4360
19
2.1
19
100
0
78
30
10
30
28
1.90
6144--6241
28
3.5
28
90
2
135
31
28
13
26
1.94
8901--8930
15
2.0
15
93
0
51
76
6
0
16
0.99
11078--11111
12
2.8
12
81
0
50
44
0
38
17
1.49
12503--12530
4
7.0
4
100
0
56
25
0
0
75
0.81
19498--19560
33
1.9
33
87
6
92
14
26
4
53
1.60
19558--19613
21
2.7
21
72
5
51
8
17
1
71
1.21
19557--19613
14
4.1
14
75
16
57
8
17
1
71
1.19
19620--19678
18
3.3
18
80
0
73
5
16
6
71
1.26
19575--19682
6
17.7
6
68
5
65
6
19
3
70
1.25
20541--20578
12
3.2
12
84
0
58
15
7
2
73
1.17
20530--20576
24
2.0
24
83
8
60
10
10
6
72
1.28
20497--20562
30
2.2
30
84
10
82
4
15
4
75
1.12
20528--20604
13
5.6
13
70
23
52
15
9
5
70
1.31
21930--21967
10
3.7
10
89
3
58
2
7
2
86
0.74
21922--21983
20
2.8
21
83
16
72
4
14
3
77
1.06
23514--23560
20
2.3
20
81
0
58
23
12
34
29
1.92
25185--25219
10
3.5
10
92
0
52
37
22
25
14
1.92
25182--25229
20
2.4
20
75
0
60
31
18
29
20
1.97
28376--28406
13
2.4
13
88
0
53
41
6
9
41
1.63
31287--31339
23
2.4
22
76
20
56
9
18
1
69
1.25
36104--36143
14
2.8
14
84
3
53
75
7
15
2
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37855--37889
18
1.9
18
88
0
52
25
8
11
54
1.64
38715--38754
19
2.1
19
85
0
53
25
35
17
22
1.95
41281--41339
27
2.2
26
85
8
75
32
10
13
44
1.77
44435--44481
20
2.3
20
81
0
58
23
12
34
29
1.92
47310--47351
12
3.9
11
78
15
52
2
9
2
85
0.77
47314--47351
10
3.7
10
83
16
51
2
7
2
86
0.74
47315--47386
20
3.4
20
78
16
65
8
11
2
77
1.08
48900--48946
20
2.3
20
81
0
58
23
12
34
29
1.92
54827--54872
10
4.6
10
83
0
56
21
26
17
34
1.95
54827--54872
20
2.3
20
92
0
74
21
26
17
34
1.95
56611--56641
12
2.6
12
100
0
62
25
16
12
45
1.83
56688--56744
5
12.0
5
81
10
59
1
15
1
80
0.87
56688--56751
14
4.6
13
76
18
58
1
15
3
79
0.93
56688--56751
19
3.2
19
78
20
67
1
15
3
79
0.93
57654--57723
13
5.5
13
76
5
72
12
5
4
77
1.10

Tables:   1

The End!