genome.fa.s370.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2051
Parameters: 2 7 7 80 10 50 1000
Length:  64281

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3741--3809	27	2.5	27	92	2	111	30	28	14	26	1.95
5698--5955	46	5.5	45	73	10	191	29	17	30	22	1.97
7512--7580	30	2.3	30	94	0	120	20	33	24	21	1.97
8712--8798	45	1.9	45	92	0	147	35	24	13	26	1.93
19608--20107	125	4.0	125	84	3	664	28	17	16	38	1.91
20164--20245	28	2.9	27	85	10	119	41	19	1	37	1.59
20164--20346	58	3.1	57	78	14	190	41	19	1	38	1.58
20164--20335	34	5.5	32	74	17	150	40	18	1	39	1.58
20193--20316	64	2.0	63	90	1	194	41	16	1	39	1.58
20164--20416	34	8.6	29	71	22	147	42	18	1	38	1.58
20188--20337	63	2.4	64	84	2	205	40	18	1	39	1.59
20301--20369	22	3.0	23	87	10	104	42	13	0	44	1.43
20349--20431	34	2.4	35	82	9	91	46	13	1	38	1.51
23189--23325	48	2.9	48	87	4	195	26	23	24	25	2.00
25615--25790	37	4.8	37	97	0	307	26	30	18	24	1.98
25909--26552	47	13.6	47	92	1	1063	29	29	8	33	1.86
25909--26552	143	4.5	143	94	0	1116	29	29	8	33	1.86
25909--26552	190	3.4	188	93	2	1090	29	29	8	33	1.86
29932--30089	41	3.9	40	82	9	178	27	27	21	22	1.99
29932--30086	81	1.9	80	84	7	206	27	28	21	21	1.99
41657--41988	49	6.7	49	72	22	182	33	9	30	26	1.89
41651--41891	97	2.5	96	80	16	257	34	10	28	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41651--41930	97	2.9	96	80	15	244	32	10	29	27	1.90
42350--42460	34	3.3	34	83	15	117	25	19	28	26	1.99
42384--42474	35	2.7	33	76	10	94	25	19	25	29	1.99
43864--44159	37	7.8	38	81	12	319	22	22	29	26	1.99
48114--48589	97	5.0	96	87	8	607	31	11	29	27	1.92
48435--48508	22	3.3	22	68	20	71	29	10	31	28	1.91
48389--48589	46	4.4	47	89	5	293	32	11	29	25	1.92
48410--48488	24	3.3	24	68	21	76	30	8	30	30	1.88
48432--48506	24	3.2	24	68	21	77	29	10	32	28	1.90
48114--48589	91	5.0	92	84	8	402	31	11	29	27	1.92
48805--48948	37	3.9	37	89	5	211	25	19	29	25	1.98
60967--61132	85	1.9	86	80	17	195	34	9	28	27	1.87
60884--61395	45	11.7	44	67	21	171	35	8	28	27	1.86
60923--61107	41	4.4	43	70	18	129	34	7	29	28	1.85
61024--61403	45	8.7	45	72	20	219	36	8	28	27	1.85
61059--61403	92	4.0	85	73	19	224	35	8	28	27	1.85
61549--61721	38	4.8	36	87	9	219	26	16	30	27	1.97

Tables:   1

The End!