Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2796
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63677
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Found at i:200 original size:38 final size:38
Alignment explanation
Indices: 100--283 Score: 165
Period size: 40 Copynumber: 4.7 Consensus size: 38
90 TTGAATGATG
* * *
100 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT
1 TCCGGGCTAAGTCCC-AAGGCATTTGTGC-GAGTTACTAT
* * *
139 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAT
1 -TCCGGGCTAAG-TCCCAAGGCATTTGTGCGAGTTACTAT
* *
179 TCCAGGCTAAG-CCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCC-AAGGCATTTGTGCGAGTTACT-AT
* *
218 TCCGGGTTAAGTCCGCAAGGCAATTGTGCGAGTTACTAT
1 TCCGGGCTAAGTCC-CAAGGCATTTGTGCGAGTTACTAT
* *
257 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCC-AAGGCATTTG
284 AAAGAGTAGC
Statistics
Matches: 117, Mismatches: 19, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
37 2 0.02
38 20 0.17
39 21 0.18
40 63 0.54
41 11 0.09
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (38 bp):
TCCGGGCTAAGTCCCAAGGCATTTGTGCGAGTTACTAT
Found at i:1292 original size:51 final size:51
Alignment explanation
Indices: 1209--1405 Score: 136
Period size: 51 Copynumber: 3.7 Consensus size: 51
1199 ATTATTAAAA
* *
1209 TATATAATT-ATAATAAATATAA-AATTATAAAATAATTATAATAAAAATAAT
1 TATATAATTAATAAT--ATATAATAATAAAAAAATAATTATAATAAAAATAAT
* *
1260 TATATAATTAATAATATATAATTATAAAAAAATAATAAATGAAATAAAAATAAT
1 TATATAATTAATAATATATAATAATAAAAAAATAAT-TAT--AATAAAAATAAT
* * * * *
1314 ATAAATAAAATTATATAAATAATAAAATAATATAAATATAATTATAA-AAATAAAAAT
1 -T--ATATAATTA-AT-AAT-ATATAATAATAAAAAAATAATTATAATAAA-AATAAT
*
1371 TAAATAAATT--TAA-ATATAATAATAAAAAAAATAAT
1 TATAT-AATTAATAATATATAATAAT-AAAAAAATAAT
1406 AAAAAATATA
Statistics
Matches: 116, Mismatches: 16, Indels: 29
0.72 0.10 0.18
Matches are distributed among these distances:
49 9 0.08
50 15 0.13
51 22 0.19
52 8 0.07
54 14 0.12
55 5 0.04
56 4 0.03
57 15 0.13
58 2 0.02
59 5 0.04
60 17 0.15
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.34
Consensus pattern (51 bp):
TATATAATTAATAATATATAATAATAAAAAAATAATTATAATAAAAATAAT
Found at i:1308 original size:20 final size:20
Alignment explanation
Indices: 1269--1542 Score: 95
Period size: 20 Copynumber: 13.2 Consensus size: 20
1259 TTATATAATT
* *
1269 AATAATATATAATTATAAAAA
1 AATAATAAATAA-AATAAAAA
*
1290 AATAATAAATGAAATAAAAA
1 AATAATAAATAAAATAAAAA
* *
1310 TAAT-ATAAATAAAATTATATA
1 -AATAATAAATAAAA-TAAAAA
*
1331 AATAATAAAATAATATAAATATA
1 AATAAT-AAATAAAATAAA-A-A
1354 ATTATAA-AAATAAAAATTAAATAA
1 A--ATAATAAAT-AAAA-TAAA-AA
* *
1378 ATTTAA-ATATAATAATAAAAAA
1 A-ATAATAAATAA-AAT-AAAAA
* *
1400 AATAATAAA-AAATATATATA
1 AATAATAAATAAA-ATAAAAA
1420 AA-AATAAATAAAATAAATAA
1 AATAATAAATAAAATAAA-AA
* *
1440 ATATAA-AAAT-ATATAAATAT
1 A-ATAATAAATAAAATAAA-AA
*
1460 TATAATAATATAAAATATAAAA
1 AATAATAA-ATAAAATA-AAAA
*
1482 GAAT-ATAAATATAAATAATTAA
1 -AATAATAAATA-AAATAA-AAA
* * *
1504 AGT-AT-AATATAAT-AATA
1 AATAATAAATAAAATAAAAA
*
1521 AATAATAAA-AAAATTAAAA
1 AATAATAAATAAAATAAAAA
1540 AAT
1 AAT
1543 TATATTTGAT
Statistics
Matches: 193, Mismatches: 32, Indels: 58
0.68 0.11 0.20
Matches are distributed among these distances:
17 3 0.02
18 7 0.04
19 25 0.13
20 44 0.23
21 44 0.23
22 33 0.17
23 22 0.11
24 5 0.03
25 10 0.05
ACGTcount: A:0.69, C:0.00, G:0.01, T:0.30
Consensus pattern (20 bp):
AATAATAAATAAAATAAAAA
Found at i:1318 original size:65 final size:66
Alignment explanation
Indices: 1202--1349 Score: 161
Period size: 65 Copynumber: 2.3 Consensus size: 66
1192 ATTTGAAATT
* * * *
1202 ATTAA-AATATATAATTAT-AATAAATATAAAATTATAAAATAATTATAATAAA-AATAATTATA
1 ATTAATAATATATAATTATAAAAAAATATAAAATGATAAAAAAATAATAATAAATAA-AATTATA
1264 TA
65 TA
1266 ATTAATAATATATAATTATAAAAAAATA-ATAAATGA-AATAAAAATAAT-ATAAATAAAATTAT
1 ATTAATAATATATAATTATAAAAAAATATA-AAATGATAA-AAAAATAATAATAAATAAAATTAT
1328 ATA
64 ATA
*
1331 AATAATAA-A-ATAA-TATAAA
1 ATTAATAATATATAATTATAAA
1350 TATAATTATA
Statistics
Matches: 74, Mismatches: 5, Indels: 12
0.81 0.05 0.13
Matches are distributed among these distances:
62 6 0.08
63 4 0.05
64 6 0.08
65 37 0.50
66 21 0.28
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.34
Consensus pattern (66 bp):
ATTAATAATATATAATTATAAAAAAATATAAAATGATAAAAAAATAATAATAAATAAAATTATAT
A
Found at i:1322 original size:35 final size:34
Alignment explanation
Indices: 1237--8688 Score: 748
Period size: 35 Copynumber: 216.5 Consensus size: 34
1227 ATAAAATTAT
* *
1237 AAAATAAT-TATAAT-AAA-AATAATTATATAATTA
1 AAAATAATATA-AATAAAATAATAA-TAAATAAATA
* *
1270 ATAAT-ATATAATTATAAAAAAATAATAAATGAAATA
1 AAAATAATATAA--ATAAAATAATAATAAAT-AAATA
*
1306 AAAATAATATAAATAAAATTAT-ATAAAT-AAT-
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* *
1337 AAAATAATATAAATATAATTATAA-AAATAAA-A
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* * * *
1369 ATTAAATAAATTTAAATATAATAATAAAAAAAATAATAA
1 A--AAAT-AATATAAATAAAATAATAATAAATA-AAT-A
*
1408 AAAATATATATAAAAATAAATAA-AATAAATAAATA
1 AAAATA-ATATAAATA-AAATAATAATAAATAAATA
** *
1443 TAAAA-ATATATAAATATTATAATAATATA-AAATA
1 -AAAATA-ATATAAATAAAATAATAATAAATAAATA
*
1477 TAAAAGAATATAAATATAAATAAT--TAAAGTATAATA
1 -AAAATAATATAAATA-AAATAATAATAAA-TA-AATA
* * *
1513 TAATAATAA-AT-AATAAAAAAATTAAAAAAT-TATA
1 -AA-AATAATATAAATAAAATAA-TAATAAATAAATA
***
1547 TTTGATAA-ATAAATATAAATTAATAATAAA-AAA-A
1 -AAAATAATATAAATA-AAA-TAATAATAAATAAATA
* * ** *
1581 AATATAAAATTAAATTATAAATTTTAA-GAATAAA-A
1 AAAATAATA-TAAA-TA-AAATAATAATAAATAAATA
* * ** *
1616 TAAATAATTATTAATTTAAAAT-ATTTTAATATATAATT
1 AAAATAA-TA-TAA-ATAAAATAATAATAA-ATA-AATA
* ** * *
1654 AAAATTATATAATATAATTTTATAAT-ATTAAA-A
1 AAAATAATATAA-ATAAAATAATAATAAATAAATA
***
1687 ATTTTAATATAAATAAAATAA-AATAAAT-AATA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* ** * ** ***
1719 ATATATAA-AT-TTTAAAAAAATAAT-TTTTCTTA
1 A-AAATAATATAAATAAAATAATAATAAATAAATA
**
1751 AAAAT-AT-T-AATAATTTTTAATAAT-AATAATATA
1 AAAATAATATAAATAA--AATAATAATAAATAA-ATA
*
1784 AAATTATATTTATAAATAAAAATAA-AATATAA-AAATTA
1 AAA--ATA-ATATAAAT-AAAATAATAATA-AATAAA-TA
* * * *
1822 TAAATAAT-TAAATTAATTAATAATATAATTAA-A
1 AAAATAATATAAATAAAATAATAATA-AATAAATA
1855 AAAATAATATATAAT-AAATAATAATAAATATAAATA
1 AAAATAATATA-AATAAAATAATAAT-AA-ATAAATA
* *
1891 TATAATTAATAATTAA-AAAATAATAA-AAATTAAAAATA
1 -A-AAATAAT-ATAAATAAAATAATAATAAA-T--AAATA
* * * *
1929 AATTAAAAAAATAAATAAAA-ATATAATTACTAAATA
1 AA--AATAATATAAATAAAATA-ATAATAAATAAATA
* * *
1965 AAAATGATTATTAAA-AAAA-AATTA-AAATAATTA
1 AAAAT-AATA-TAAATAAAATAATAATAAATAAATA
** * * * *
1998 TTAATTAT-TAATTTAAATTATTAAATAAATAAA-A
1 AAAATAATATAA-ATAAAATAAT-AATAAATAAATA
* *
2032 ATAGAATTAATATAAA-AAAATTAA-AATTATATAAAAA
1 A-A-AA-TAATATAAATAAAA-TAATAA-TAAATAAATA
* *
2069 AAAATTATATAAA-AATAATAAATAATTTCATATAAATA
1 AAAATAATATAAATAA-AAT-AATAA--T-AAATAAATA
* *
2107 AAAATAAGTATATAA-AAAATAAAAAATAAATATATA
1 AAAATAA-TATA-AATAAAAT-AATAATAAATAAATA
* *
2143 AAAAAAATAAAAAT-AAATAA-AA-AAAT-AAT-
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* * * *
2172 -AATTAATTTAAATATAA-AAT--TAAATATATA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* * **
2202 TAAAAT--TATAAATAAAAATATAAAATAATTTTATA
1 -AAAATAATATAAAT-AAAATA-ATAATAAATAAATA
* *
2237 AATTAA-ATTATAAA-AAAATAATAA-AAAAAAATAA
1 AA--AATAATATAAATAAAATAATAATAAATAAAT-A
*
2271 AAAATTAATGA-AATATTATTAAATAATAATATAT-AATA
1 AAAA-TAAT-ATAA-A-TA--AAATAATAATAAATAAATA
* * *
2309 TATAATAAT-TAAATATAAA-AGTTAT-AATAAAT-
1 -AAAATAATATAAATA-AAATAATAATAAATAAATA
* * * *
2341 -TATTAATAT-AATAAAAT-A-AATATATAAATT
1 AAAATAATATAAATAAAATAATAATAAATAAATA
2371 AAAATAATATAAA-AAAATAATAATTAAATAAATA
1 AAAATAATATAAATAAAATAATAA-TAAATAAATA
* *
2405 ATTAATAA-ATTAAATATAA-AA-AATAATATAAATAA
1 A-AAATAATA-TAAATAAAATAATAATAA-ATAAAT-A
* *
2440 ATAAATAATATAAATAATATATATAATTAAAAATAATA
1 A-AAATAATATAAATAAAATA-ATAA-TAAATA-AATA
* * * *
2478 ATAAATAATA-ATATTATAAAT-ATTATATTATATATA
1 A-AAATAATATA-AATA-AAATAATAATA-AATAAATA
* * * *
2514 AATATTAA-AAAAATAAAATATTATATTAAATTAATA
1 AA-AATAATATAAATAAAATA--ATAATAAATAAATA
*
2550 AAAA-AA-A-AATTAAAAT--TAAT--ATAAATTA
1 AAAATAATATAAATAAAATAATAATAAATAAA-TA
* * *
2578 AAAATAATAATTAA-AAATTATTAATATAAT-AA-A
1 AAAATAAT-ATAAATAAAATAATAATA-AATAAATA
* *
2611 AAAA-AAT-TAAAT--ATTAATAAT-AATTAATA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* *
2640 TAAAATATATATTATATATAAATAATAAATAAATATCATTA
1 -AAAATA-ATA-TAAATA-AAATAAT-AATAAATA--AATA
** *
2681 TTTATTAATAATAAATATATAAT-ATAATTAAATAAAT-
1 -AAAATAAT-ATAAATA-A-AATAATAA-TAAATAAATA
* *
2718 TAAATAAT-TAAATAAAATAAAAATATAATAAATAA
1 AAAATAATATAAATAAAATAATAATA-AATAAAT-A
* * * *
2753 ATAAAAAACATTAATAATATAAT-A-AAATATAAT-
1 A-AAATAATATAAATAAAATAATAATAAATA-AATA
* * *
2786 AAAATAATAAAAATAATATAATAAT-AATATA-A
1 AAAATAATATAAATAAAATAATAATAAATAAATA
*
2818 AA-ATAATATTAATAAAA-AATAATAAATAAATA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* *
2850 AATAA-ATTATTAAA-AATAAAAATAATAAA-AAAT-
1 AA-AATAATA-TAAATAA-AATAATAATAAATAAATA
* * *
2883 AAATTAATAT-AATAAAAT-ATTAT-TATAAA-A
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* * * *
2913 AAAAAAATA-AAATTATATAATAA-AAATAAGTA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* **
2945 ATAAATAAATAAAAATTAAAATCTTAA-AAATAAATA
1 A-AAAT-AATATAAA-TAAAATAATAATAAATAAATA
* * *
2981 ATATTATATTTATAAA-AATATAATTAATAATTATATAATA
1 A-A-AATA-ATATAAATAAAATAA-TAATAA--ATA-AATA
* * * *
3021 AAAATAA-ATTAAAATAAATTAAT-ATTATTAATTTA
1 AAAATAATA-T-AAATAAAATAATAATAAATAA-ATA
* *
3056 AAAAT-ATAT--ATAATAAT-ATATTAAATTATATA
1 AAAATAATATAAATAA-AATAATAATAAA-TAAATA
3088 AAAA-AATA-AAAT-AAA-AATATATAAA-AAATA
1 AAAATAATATAAATAAAATAATA-ATAAATAAATA
* * *
3118 AAAAT-ATATAATTCAAAATTATTA-AAATAAATA
1 AAAATAATATAAAT-AAAATAATAATAAATAAATA
* *
3151 TAATATAATAT-AATAATAAATAAT-ATAATTAAAATTA
1 -AAAATAATATAAAT-A-AAATAATAATAAAT-AAA-TA
* * * *
3188 AGAATAA-A-AATTAAAATAA-AAAAAATATATTA
1 AAAATAATATAAATAAAATAATAATAAATA-AATA
* * * * *
3220 TATAATAATTTTAATTAAAAT-ATAATATATAATTA
1 -AAAATAA-TATAAATAAAATAATAATAAATAAATA
* * * *
3255 TAAA-AATAAAAAT-TAATAATTAATAAAT-ATTA
1 AAAATAATATAAATAAAATAA-TAATAAATAAATA
* * * * *
3287 AAAA-AAAAT-AAT-ATATTATATTAAA-AATTA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
3317 AAAA-AA-A-AAATTAAAATTAA-AATAAA-AAA-A
1 AAAATAATATAAA-TAAAA-TAATAATAAATAAATA
*
3347 AAAAAAATAT-AATAAATATAA-AATTAAATATAATTTAA
1 AAAATAATATAAATAAA-ATAATAA-TAAATA-AA--T-A
* **
3385 AAAATAATTATATATATCAAAATAATTATAAAT-TTTAA
1 AAAATAA-TATA-A-AT-AAAATAATAATAAATAAAT-A
* * *
3423 AAAATAAAATAAATAAAATTAAT-ATTAATAAAAA
1 AAAATAATATAAATAAAA-TAATAATAAATAAATA
* * * *
3457 AAAATAAAATATTAATTAATATAAT-ATAAAATTATTAA
1 AAAAT--AATA-TAAATAAAATAATAAT-AAATAAAT-A
* * * * *
3495 AAAATAAAATTATATAAAATAATCATTATATATATA
1 AAAATAATA-TAAATAAAATAAT-AATAAATAAATA
* * *
3531 AATATATTATAAATAATAAAAATAATATAATAAATA
1 AAAATAATATAAATAA-AATAATAATA-AATAAATA
*
3567 AAATATATATTATAAAAAAAATAA-AATAAA-AAAT-
1 AAA-ATA-A-TATAAATAAAATAATAATAAATAAATA
* **
3601 AAAATAATATATAATTTATAATTTTAATAAA-AAA-A
1 AAAATAATATA-AA--TAAAATAATAATAAATAAATA
*
3636 ATAATATATATTTAAAT-AAATAAT-ATCAAATAAATTTTA
1 A-AA-ATA-ATATAAATAAAATAATAAT-AAATAAA---TA
* * *
3675 AATATAA-ATAAATATAATAATAATAAATATATA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
** * * * *
3708 AATTTAAT-TATATAAAATAAT-ATTATTATATAA
1 AAAATAATATAAATAAAATAATAATAAATAAAT-A
* *
3741 AAAATAAATATAATATAAATATATTAA-AATATATATA
1 AAAAT-AATATAA-ATAAA-ATAATAATAA-ATAAATA
* * * * *
3778 ATAATAA-A-AAA-AAAAAAAAAATAAATTACTA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* * *
3809 AATTATATATAAAAATAAACAAGTAATAAT-TATAAATA
1 AA-AATA-ATATAAAT-AA-AA-TAATAATAAATAAATA
*
3847 AAAAT-ATA-AAA-AAATTATATAAATAAA-AAATA
1 AAAATAATATAAATAAAATA-AT-AATAAATAAATA
* * *
3879 TAAAA-AA-ATAAATAATAAT-GTAATAATTAGTTATA
1 -AAAATAATATAAATAA-AATAATAATAAATA--AATA
* * *
3914 TAAAAT-ATAAAAATAATATTTAAAAAT-AATAAAT-
1 -AAAATAATATAAATAA-A-ATAATAATAAATAAATA
* * *
3948 TAAATAATAAAAAT-AAAT-ATAATAAATAAATT
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* *
3980 AAAA-AAT-TTAATATAA-AATAA-AAATAAATA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* *
4010 AAATTAAATATAAAT-AAAT-ATAA-AATATTAATA
1 AAAAT-AATATAAATAAAATAATAATAA-ATAAATA
* * * * *
4043 TAATTAAT-TATAATAAAATATTAATTTAATATATA
1 AAAATAATATA-AATAAAATAATAA-TAAATAAATA
* * * ** * *
4078 AAATTAATTTAATATTATTTAAAAATATA-AAATA
1 AAAATAATATAA-ATAAAATAATAATAAATAAATA
*
4112 AAAA-AATATAAAATAAATATATTTTAA-AATATAAA-A
1 AAAATAATAT-AAATAAA-ATA--ATAATAA-ATAAATA
* **
4148 TAAAATATATATAATATAAAAAAATAA-AAAT-TTTA
1 -AAAATA-ATATAA-ATAAAATAATAATAAATAAATA
* * *
4183 AAAATTTAATAT--ATAGAAT-ATTATAAAAAAATA
1 AAAA--TAATATAAATAAAATAATAATAAATAAATA
* *
4216 TAAA-AA-ATAAATAAAA-ATATAA-AAATATATATT
1 AAAATAATATAAATAAAATA-ATAATAAATA-A-ATA
*
4249 AAAAT-AT-TAAATAAATATATATAAATAAAAATAATA
1 AAAATAATATAAATAAA-ATA-AT-AATAAATA-AATA
*
4285 AATAATAATATAATTATAAAT-ATAATAAATAAATA
1 AA-AATAATATAAATA-AAATAATAATAAATAAATA
* * * *
4320 TATAATAAATTATAAACAAAA-AAT--T-TATATATA
1 -AAAAT-AA-TATAAATAAAATAATAATAAATAAATA
*
4353 AAAATAATATAAATAAATATATATAA-AAAAAAATTAA
1 AAAATAATATAAATAAA-ATA-ATAATAAATAAA-T-A
* *
4390 AAAATAAT-TATAT-AAA-AAT-ATAAAAAAATA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* * * *
4420 ATATAATAA-ATAAAATTAAAAT-CTTATAAAAAAAAA
1 A-A-AATAATAT-AAA-TAAAATAATAATAAATAAATA
* *
4456 AAAATAATAATATATTAATATAATAAT-AATAAAT-
1 AAAATAAT-ATA-AATAAAATAATAATAAATAAATA
*
4490 TAAAT-ATAATAAA-AAAATAAT-AT-AATAAA-A
1 AAAATAAT-ATAAATAAAATAATAATAAATAAATA
* * * * * *
4520 ATATTAATATAAAATTATATTATTAATTAATATAAT-
1 AAAATAATAT-AAA-TAAAATAATAATAAATA-AATA
* * *
4556 TAAATTATATAAAAAAAATAAT--TAAA-AATATA
1 AAAATAATATAAATAAAATAATAATAAATAA-ATA
* * *
4588 AATATAATA-AAAAAAAATATTAA-AAATATTATATA
1 AAAATAATATAAATAAAATAATAATAAATA--A-ATA
* * * *
4623 TTAATATTATTATAATATAAATTAATTATAAATAAATA
1 --AA-AATAATATAA-ATAAAATAATAATAAATAAATA
* * * *
4661 TATAATATTAAAAATATATAA-ATTAAATAATATAATATA
1 -AAAATAATATAAATA-A-AATAAT-AATAA-ATAA-ATA
* *
4700 AAAAT-ACATAAATAAAA-AATTAA-AAGAAAAATA
1 AAAATAATATAAATAAAATAA-TAATAA-ATAAATA
* * **
4733 AAATTATTATAATAAA-AAAATATTAAT-AATATTTA
1 AAA--ATAAT-ATAAATAAAATAATAATAAATAAATA
* *
4768 AAAA-AATA-ATATAAAA-AAT--TTAATAAATA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* * *
4797 AAAATATATATTAAATTAAAAAAATTAAATATATATATA
1 AAAATA-ATA-TAAA-TAAAATAA-T-AATAAATAAATA
* * *
4836 ATAATTAAAAT-AATAAAA-AATAA-AAATTAATA
1 A-AAATAATATAAATAAAATAATAATAAATAAATA
* *
4868 AAAGATAATAATAAATTAAAAAAATTATATAAT-AATA
1 AAA-ATAAT-ATAAA-TAAAATAATAATA-AATAAATA
* * * *
4905 TAAAT-ATAAAAATATATTATATAAT-AAT-AATA
1 AAAATAATATAAATAAAATA-ATAATAAATAAATA
* *
4937 ATTAAATTATATAAAT-AAATATTATATATAATATAAT-
1 A--AAATAATATAAATAAAATAATA-ATA-AATA-AATA
* *
4974 AAAATATATATATTATAAAAT-ATAA-ATATTAAATA
1 AAAATA-ATATA-AATAAAATAATAATA-AATAAATA
* * * * *
5009 TAATTAATA-ACATATATATATTATTATAAATAAATA
1 AAAATAATATA-A-ATA-AAATAATAATAAATAAATA
* * * *
5045 AATAT-TTAATAAATAATATTAT-A-AAATAAATA
1 AAAATAAT-ATAAATAAAATAATAATAAATAAATA
* *
5077 AATAT-ATATAAATAATA-AAT-AT-AA-AAATA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* * *
5106 ATAATAA-AAAAATATAATAATAATAAATAAAGTTA
1 AAAATAATATAAATAAAATAATAATAAATAAA--TA
*
5141 AAAA-ATTATAAATAAAA-AATAAATATATAATAAAT-
1 AAAATAATATAAATAAAATAAT--A-ATA-AATAAATA
*
5176 AAAATAAATATATAA-AAAATCATAATAAA-AAATA
1 AAAAT-AATATA-AATAAAATAATAATAAATAAATA
5210 AATAATTAATATATAA-AAAA-AATAATAAAATAAAAATA
1 AA-AA-TAATATA-AATAAAATAATAAT-AAAT--AAATA
*
5248 AAAA-AA-A-AAATTAAAATAA-AAT-AATAATTA
1 AAAATAATATAAA-TAAAATAATAATAAATAAATA
* *
5278 ATTAAATATTA-AAATATAA-AATATATAAATAAATA
1 A--AAATAATATAAATAAAATAATA-ATAAATAAATA
** * *
5313 AAAATAAT-TATTTAATTATAAT-ATAAAAAATATA
1 AAAATAATATAAATAA-AATAATAATAAATAA-ATA
* *** *
5347 AAAAT-ATATATATTTTATTATAA-AAATAAAATA
1 AAAATAATATAAATAAAATAATAATAAAT-AAATA
* *
5380 AATATATATAAAAATAAATATAATATATTAAAATAAAATA
1 AAAATA-ATATAAATAAA-ATAATA-A-T-AAAT-AAATA
* * *
5420 ATAATAAAAATATTATAAAATAATTAATAATATAAATA
1 AAAAT-AATATA-AATAAAATAA-TAATAA-ATAAATA
*
5458 ATAAAT-ATCT--ATAAAATAA-AATAAA-AAATTA
1 A-AAATAATATAAATAAAATAATAATAAATAAA-TA
* *
5489 AAAATAATTTATAAAAAAAATAA-AAT-AATAAATT
1 AAAATAA--TATAAATAAAATAATAATAAATAAATA
* *
5523 AATATAATAATAAATTTAACATAATAATAAA-AAATTA
1 AAAATAAT-ATAAA--TAAAATAATAATAAATAAA-TA
* * *
5560 TATATAAATTACAAATAAAAT-ATAAATATAATAAA-A
1 AAAAT-AA-TATAAATAAAATAAT-AATA-AATAAATA
* * * *
5596 ATAAATAATATAAA-AATATTAAAAAAAAATTTAATTA
1 A-AAATAATATAAATAA-AATAATAATAAA--TAAATA
* * * *
5633 TAAATTATATTAAAT--AATAATTTAGAAATAATATTA
1 AAAATAATA-TAAATAAAATAA-TAATAAATAA-A-TA
* * * *
5669 TATATTATATATATAAAA-AATAATTAAAATAAATA
1 AAAATAATATAAATAAAATAATAA-T-AAATAAATA
* *
5704 AATATAATTTAATATTAAAAT-ATAAATTATAATAAAT-
1 AAAATAATATAA-A-TAAAATAAT-AA-TA-AATAAATA
* * * *
5741 -ATATAA-ATAAATAGAATAA-AATTATTATAATA
1 AAAATAATATAAATAAAATAATAATAAATA-AATA
*
5773 AAAATAA-ATAAATAAAATTATAATAAAATAAAATAA
1 AAAATAATATAAATAAAATAATAAT-AAAT-AAAT-A
*
5809 ATAAATAATATAAAT-AAATAATAAAAAATAAATTA
1 A-AAATAATATAAATAAAATAATAATAAATAAA-TA
* *
5844 TAAAA-AAAATATAA-AAAATAA-ATATAATATTATATAA
1 -AAAATAATATA-AATAAAATAATA-ATAA-A-TAAAT-A
* *
5881 AAAATAAT-TAAATTAAAA-AA-ATTAAA-ATATA
1 AAAATAATATAAA-TAAAATAATAATAAATAAATA
* * * *
5912 AAAAT-ATATAAATAATATTATATTTAAT-AATA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* *
5944 AATAT-TTAT-AAT-AAATAATAA-AAATAAAGTTA
1 AAAATAATATAAATAAAATAATAATAAATAAA--TA
** * * *
5976 ATTATAAAATTAAATATAAT-TTAAT-AA-AAATA
1 AAAATAATA-TAAATAAAATAATAATAAATAAATA
* * * *
6008 TAATTAATTTTAAATATATTAATATTATTAAAAAATAATAATA
1 AAAATAA-TATAAATA-A--AATA--A-TAATAAAT-A-AATA
* * *
6051 AAAATATTA-AAATTAATATAAT-ATAATTAAAATA
1 AAAATAATATAAA-TAAAATAATAATAAAT-AAATA
* * ** * *
6085 ATAATAAAATATGTAAAATATTAAAAAATAAATA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
*
6119 ATAAATTTAAATATAAA-AAAA-AATAA-AAATATTATA
1 A-AAA--T-AATATAAATAAAATAATAATAAATA-AATA
* *
6155 AATAAT-ATATATATAAATTTAATAATAAATAAATA
1 AA-AATAATATAAATAAA-ATAATAATAAATAAATA
** *
6190 ATTA-AAT-TAAATATAAA-ATTAATTAAA-AAATA
1 AAAATAATATAAATA-AAATAATAA-TAAATAAATA
* * *
6222 TAAAA-AAAAT-AATAATATAATTTAAATAAATATTATA
1 -AAAATAATATAAATAAAATAA--T-AATAAATA-AATA
* * * * *
6259 ATAATAATTATAAAATTAAATAAAAATTAATAATTA
1 AAAATAA-TAT-AAATAAAATAATAATAAATAAATA
* ** * *
6295 TATTTATATATAAAATAAAATAATAATAATTTAATTA
1 AAAATA-ATAT-AAATAAAATAATAATAA-ATAAATA
* * *** *
6332 ATAAATCAATAT--ATTAAATAAAAATTTTTCATATTA
1 A-AAAT-AATATAAATAAAATAATAATAAAT-A-AATA
* * *
6368 AATAATTAATATACATAAATATCATTAAT-AATATTATA
1 AA-AA-TAATATAAATAAA-AT-AATAATAAATA-AATA
* *
6406 TAAAATAATATTAAAATATAATATATTTAAAAAATAAATA
1 -AAAATAATA-T-AAATA-AA-ATA-ATAATAAATAAATA
*
6446 ATTAAATAATA-AAATATAA-AA-AATATAATAAATTA
1 A--AAATAATATAAATAAAATAATAATA-AATAAA-TA
* * *
6481 TAAAT-ATAAAAATAAATATAA-AATATAATTAATTA
1 AAAATAATATAAATAAA-ATAATAATA-AA-TAAATA
* *
6516 AAAATAA-ATAAATATAATAAT--TAAAT-ATTA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* *
6546 AAATTAATAATTAATTAATATATAATTAAATTTAAATTAAAT-
1 AAAATAAT-A-TAAATAA-A-ATAA-T-AA--TAAA-TAAATA
* * * * *
6588 AATATAATTTTAATAAAATAATTAT-AATTAA-A
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* * * * * * *
6620 AAAATAATAGAATTTAATTATTAAAAAATAATACA
1 AAAATAATATAAATAAAATAATAATAAATAA-ATA
* * *
6655 AATAATATATATAAATAAAATATATTATATATTATATA
1 AA-AATA-ATATAAATAAAATA-ATAATA-AATAAATA
*
6693 AAAATATATATAAA-AAAA-AAAAAGT-AATAAATA
1 AAAATA-ATATAAATAAAATAATAA-TAAATAAATA
* *
6726 AATTATTAAT-T-AA-AAAATAATAATAGATAAAATA
1 AA--AATAATATAAATAAAATAATAATAAAT-AAATA
*
6760 AAAA-AATTATAAATATAAA-AAGAAT-AATAATATA
1 AAAATAA-TATAAATA-AAATAATAATAAATAA-ATA
* * *
6794 ATATTAATAT-AATAATATAA-AATAAATATAAATA
1 AAAATAATATAAATAAAATAATAAT-AA-ATAAATA
*
6828 AAAATATATTATTATATAATAAATAAT-ATAAATATATATA
1 AAAATA-A-TA-TAAAT-A-AAATAATAATAAATA-A-ATA
*
6868 TAAAA-AATATATATATTAAATAATAATAAATAAA-A
1 -AAAATAATATA-A-ATAAAATAATAATAAATAAATA
* * * * *
6903 TAATTAATTATAATAAAAAATAA-AATATATATATA
1 AAAATAA-TATAA-ATAAAATAATAATAAATAAATA
*
6938 AATATAATATAAATTAAAA-AA-AAT--ATAATATA
1 AAAATAATATAAA-TAAAATAATAATAAATAA-ATA
6970 ATAAA-AAT-T-AA-AAAATAATAAT--AT-AATA
1 A-AAATAATATAAATAAAATAATAATAAATAAATA
* *
6998 AAAATAATTATATTATTAAA-AATAAATAAATAAATA
1 AAAATAA-TATA-AATAAAATAAT-AATAAATAAATA
* * ** *
7034 AAAAAAATTATAATATAAATTAAT-ATTTAT-ATTA
1 AAAATAA-TATAA-ATAAAATAATAATAAATAAATA
*
7068 TAAAATGAATATATAAT-AAAT-ATAATAAAATATATTA
1 -AAAAT-AATATA-AATAAAATAATAAT-AAATA-AATA
* **
7105 TAAAT-ATATAAA-AAATATTTAAATTTTTAAA-AAATA
1 AAAATAATATAAATAAA-A--T-AA-TAATAAATAAATA
* *
7141 TAAATAATA-ATAATAATAATAAT-ATATATAAAT-
1 AAAATAATATA-AATAA-AATAATAATAAATAAATA
* * * *
7174 TAGATAATATAAATATATAATAAAAATTAATAAATA
1 AAAATAATATAAATA-A-AATAATAATAAATAAATA
* *
7210 AAAAT-ATATAAATAATATAATATTAAA-AAA-A
1 AAAATAATATAAATAAAATAATAATAAATAAATA
** * *
7241 AATTTAATAATATATAAAATAATTTATAAA-AATTATA
1 AAAATAAT-ATAAATAAAATAA-TAATAAATAA--ATA
*
7278 AAAA-AATAATTAATATAAAATTAA-AA-AATTAAATTA
1 AAAATAAT-A-TAA-ATAAAA-TAATAATAAATAAA-TA
* *
7314 AATTATAATATAGTAACTATAAATTAA-AAAAAAT-AATA
1 AA-AATAATATA--AA-TA-AAA-TAATAATAAATAAATA
* *
7352 TAAAT-ATATAAA-AAAAT-ATAATATTATAATTATA
1 AAAATAATATAAATAAAATAATAATA-AATAA--ATA
* * *
7386 AAAAT--TAGTAAATATAAT-ATAAT-ATTATAT-
1 AAAATAATA-TAAATAAAATAATAATAAATAAATA
* * * *
7416 AAAA-AATA-AAAAAAAATATTATTTAAT-AATA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* * *
7447 AATATTAAATATAAATTAATTAAT-ATAAATAATAATA
1 AA-AAT-AATATAAATAAAATAATAATAAAT-A-AATA
* * *
7484 AAAATTAA-AAAAATAATAATTATAAAAAATTATAATA
1 AAAA-TAATATAAATAA-AATAATAATAAA-TA-AATA
* **
7521 TAATATAATATAAATAATTTATATAATAAAT-AAT-
1 -AAAATAATATAAATAAAATA-ATAATAAATAAATA
** * * * *
7555 AAAATAA-ATATTTATATTTA-AATAAATAAATT
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* ** *
7587 AAAATAATTTTAAAATATTATATATAATTTAAAAAATATA
1 AAAATAA-TAT-AAATAAAATA-ATAA--TAAATAA-ATA
* *
7627 AAAATAA-AT-ATTTAAATAATAA-AAAT-AATA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* *
7657 ATAAT-ATAT-AA-AAAATTATAATAAATAAATA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
** * * * **
7688 TTAA-AATAAAAATTATATAATAATAAAATATTTA
1 AAAATAATATAAATAAAATAATAAT-AAATAAATA
* * *
7722 ATAAATATTATTAATAAATTAATTAA-AAATATATATA
1 A-AAATAATATAAATAAAATAA-TAATAAATA-A-ATA
* * *
7759 TAATTAATAATAAATAAATATTATATATATAATAAAT-
1 AAAATAAT-ATAAATAAA-ATAATA-ATA-AATAAATA
* * *
7796 -AAATAATATAATTAAAA-AAAAATTTAAT-AATA
1 AAAATAATATAAATAAAATAATAA-TAAATAAATA
* * * *
7828 AATAA-AAT-TAAAT-TAATTATATTATATAAATA
1 AA-AATAATATAAATAAAATAATAATAAATAAATA
* *
7860 TAAATTTAATA-ATAAT-AAATAATAATAATTTAAATA
1 -AAA-ATAATATA-AATAAAATAATAATAA-ATAAATA
* *
7896 AAAA-AA-ATTAATAAAAATAA-AA-AATATAAAATT
1 AAAATAATATAAAT-AAAATAATAATAA-AT-AAATA
* * *
7929 AAAA-AAT-TAAATTATATGTATAA-AATATAAATTA
1 AAAATAATATAAATAAAAT-AATAATAA-ATAAA-TA
* **
7963 AATATAATATATTTAAATATAATAAT-AATAAATTA
1 AAAATAATATAAATAAA-ATAATAATAAATAAA-TA
* * *
7998 TATATTAAAAT-AATAAAATAATAAT-AATAAATTA
1 -AAAATAATATAAATAAAATAATAATAAATAAA-TA
* * **
8032 ATAAATTATATAAATAAAATTATAA-AAATTATTTA
1 A-AAATAATATAAATAAAATAATAATAAA-TAAATA
* * *
8067 TATAA-AATATAAATATAATATATAAAAATATAAAATA
1 -AAAATAATATAAATAAAATA-ATAATAA-AT-AAATA
* * * *
8104 AATATAATAT-AATAATATTATTTAATATATATAAT-
1 AAAATAATATAAATAA-AATA-ATAATAAATA-AATA
* * ** * * *
8139 AAATTAATTATTAATTTAATAAATAATTAATATATT
1 AAAATAA-TATAAATAAAAT-AATAATAAATAAATA
** * * *
8175 ATTATATTATATAA-AAAA-AATAAT-ATTATAT-
1 AAAATAATATA-AATAAAATAATAATAAATAAATA
* * *
8206 AAAATTATATAATTAATATAATAAATAATATAATATA
1 AAAATAATATAAATAAAATAAT-AATAA-ATAA-ATA
* * * *
8243 ATAA-AATA-AAATAATATAGTAAT--ATTAATA
1 AAAATAATATAAATAAAATAATAATAAATAAATA
* * * *
8273 AATATATTATAAA-AAAATATTTAATATAAAAAAATA
1 AAAATAATATAAATAAAATA-AT-A-ATAAATAAATA
* * *
8309 TAAAA-ATTATAAAT-AATTAA-AATATA-AAATA
1 -AAAATAATATAAATAAAATAATAATAAATAAATA
*
8340 ATATAATAATTAAAAATAAAA-AATTAA-AAA-AATATAA
1 A-A-AATAA-TATAAATAAAATAA-TAATAAATAA-AT-A
* *
8377 AAAAAAATTATAAATAAAATAAAAAT-AATAAA-A
1 AAAATAA-TATAAATAAAATAATAATAAATAAATA
* *
8410 AAATTAA-A-AAATAAATTAATAATATTAA-AAATA
1 AAAATAATATAAATAAAATAATAATA--AATAAATA
* *
8443 AAAAT-ATA-AATATATAAATAA-AAT-ATTATATTA
1 AAAATAATATAA-ATA-AAATAATAATAAATA-AATA
* *** * *
8476 AAAA-AAT-TTAATTTTATAATATTATATAAAATA
1 AAAATAATATAAATAAAATAATAATAAAT-AAATA
** * * * * *
8509 TATTATAA-ATTAAT-AAATAATAAAATAATTATTT
1 -AAAATAATATAAATAAAATAATAATA-AATAAATA
*
8543 ATAATAATATATAATAAAA-AAT-ATAAATAAATA
1 AAAATAATATA-AATAAAATAATAATAAATAAATA
*
8576 AAATTAA-ATAAATATAAA-ATATAAT-AATAAA-A
1 AAAATAATATAAATA-AAATA-ATAATAAATAAATA
* * *
8608 CAAAAT-ATAT-AATATAATAATGATTAA-AAATA
1 -AAAATAATATAAATAAAATAATAATAAATAAATA
* *
8640 TATAA-AATA-AAATATAAA-AATAATAAAAAAAT-
1 -AAAATAATATAAATA-AAATAATAATAAATAAATA
*
8672 AATATAATATAAATAAA
1 AAAATAATATAAATAAA
8689 TAGCAATTTC
Statistics
Matches: 5385, Mismatches: 1081, Indels: 1907
0.64 0.13 0.23
Matches are distributed among these distances:
27 10 0.00
28 36 0.01
29 82 0.02
30 253 0.05
31 357 0.07
32 519 0.10
33 634 0.12
34 662 0.12
35 893 0.17
36 749 0.14
37 470 0.09
38 341 0.06
39 171 0.03
40 123 0.02
41 49 0.01
42 22 0.00
43 14 0.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.34
Consensus pattern (34 bp):
AAAATAATATAAATAAAATAATAATAAATAAATA
Found at i:1464 original size:133 final size:131
Alignment explanation
Indices: 1269--1601 Score: 309
Period size: 132 Copynumber: 2.5 Consensus size: 131
1259 TTATATAATT
* * * *
1269 AATAATATATAAT-TATAAAAAAAT-AAT-AAATGAAATAAAAATAATATAAATA-AAAT-TATA
1 AATAATAAAAAATATATATAAAAATAAATAAAAT-AAATAAATATAA-A-AAATATAAATAT-TA
* *
1329 TAAATAATAAAATAATATAAATATAATTATAAAAATAAA-AATTAAA-TA-AAT-TTA-AATATA
62 T-AATAATAAAA-AATATAAA-AGAA-TATAAAAATAAATAATTAAAGTATAATATAATAATA-A
1389 ATAATAAAAAA
122 ATAAT-AAAAA
1400 AATAATAAAAAATATATATAAAAATAAATAAAATAAATAAATATAAAAATATATAAATATTATAA
1 AATAATAAAAAATATATATAAAAATAAATAAAATAAATAAATATAAAAA-ATATAAATATTATAA
* *
1465 TAATATAAAATATAAAAGAATATAAATATAAATAATTAAAGTATAATATAATAATAAATAATAAA
65 TAATAAAAAATATAAAAGAATATAAAAATAAATAATTAAAGTATAATATAATAATAAATAATAAA
1530 AA
130 AA
* * * *
1532 AAT--TAAAAAATTATATTTGATAAATAAATATAAATTAAT-AATAAAAAAAAATATAAA-ATTA
1 AATAATAAAAAA-TATATAT-AAAAATAAATA-AAATAAATAAAT-ATAAAAAATATAAATATTA
*
1593 -AATTATAAA
62 TAATAATAAA
1602 TTTTAAGAAT
Statistics
Matches: 173, Mismatches: 14, Indels: 31
0.79 0.06 0.14
Matches are distributed among these distances:
129 11 0.06
130 24 0.14
131 33 0.19
132 54 0.31
133 42 0.24
134 9 0.05
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (131 bp):
AATAATAAAAAATATATATAAAAATAAATAAAATAAATAAATATAAAAAATATAAATATTATAAT
AATAAAAAATATAAAAGAATATAAAAATAAATAATTAAAGTATAATATAATAATAAATAATAAAA
A
Found at i:1531 original size:83 final size:83
Alignment explanation
Indices: 1205--8686 Score: 537
Period size: 81 Copynumber: 91.6 Consensus size: 83
1195 TGAAATTATT
* *
1205 AAAATATATAATTATAAT-A-AATATAAAATTATAAAATAAT-TATAATAAAAATAATT--ATAT
1 AAAATATATAAATATAATAATAATATAAAA-TATAAAATAATATA-AATATAAATAATTAAATAT
1265 AATTAATAATATATAATTATAA-A
64 AATT-ATAATA-ATAA--ATAATA
* * *
1288 AAAATA-ATAAATGA-AATAAAAATAATATAA-ATAAAATTATATAAATAATAAAATAATATAAA
1 AAAATATATAAAT-ATAATAATAAT-ATAAAATATAAAATAATATAAAT-AT-AAATAAT-TAAA
*
1350 TATAATTATAAAAATAAA-AATTA
61 TATAATTATAATAATAAATAA-TA
* *
1373 AATAA-ATTTAAATATAATAATAA-AAAAAATAATAAAA-AATAT--ATATAAA-AA-TAAATA-
1 AA-AATATATAAATATAATAATAATATAAAAT-ATAAAATAATATAAATATAAATAATTAAATAT
1430 AA--AT-A-AATAAAT-ATA
64 AATTATAATAATAAATAATA
* *
1445 AAAATATATAAATATTATAATAATATAAAATATAAAAGAATATAAATATAAATAATTAAAGTATA
1 AAAATATATAAATATAATAATAATATAAAATATAAAATAATATAAATATAAATAATTAAA-TATA
1510 A-TATAATAATAAATAATA
65 ATTATAATAATAAATAATA
* * * * * * *
1528 AAAAAATTAAAAAATTATATTTGATAA-AT-AAATATAAATTAATAATAAAAAAAAATATAAAAT
1 AAAATA-T-ATAAA-TATA-ATAATAATATAAAATATAAAATAAT-AT-AAATATAA-AT--AAT
* *
1591 TAAATTATAAATTTTAAGAAT-AA-AATA
57 TAAA-TAT-AATTATAATAATAAATAATA
* * * * * * * * *
1618 AATAAT-TATTAATTTAA-AATATTTTAATATAT-AATTAAAAT-TATATAATATAATT--TTAT
1 AA-AATATATAAATATAATAATAATATAAAATATAAAATAATATAAATATAA-ATAATTAAATAT
* *
1677 AA-TATTAAAAATTTTAAT-ATA
64 AATTA-TAATAA--TAAATAATA
* * * ** *
1698 AATAAAATA-AAATA-AATAATAATATATAAATTTTAAAA-AA-AT-AAT-T--TTTCTTAAAAA
1 AA-AATATATAAATATAATAATAATATA-AAA-TATAAAATAATATAAATATAAATAATTAAATA
** *
1755 T-ATTAATAATTTTTAATAATA
63 TAATT-ATAATAATAAATAATA
* * * *
1776 ATAATATA-AAATTATATTTATAA-ATAAAA-ATAAAAT-ATAAAAATTATAAATAATTAAAT-T
1 AAAATATATAAA-TATAATAATAATATAAAATATAAAATAATATAAA-TATAAATAATTAAATAT
*
1836 AATTAATAAT-ATAATTAA-A
64 AATT-ATAATAATAAATAATA
*
1855 AAAATAATATATAATAAATAATAATAAATATAAATATATAATTAATAATTAAAAAATAATAAA-A
1 AAAAT-ATATA-AAT--ATAATAAT-AATATAAA-ATATAA--AATAA-T-ATAAAT-ATAAATA
* * *
1919 ATTAAAAATAAATTAAAAAAATAAATAA-A
55 ATTAAATAT-AATTATAATAATAAATAATA
* * * * * *
1948 AATATAATTACTAAATA-AA-AATGATTATTAAAA-A-AAAATTAAAATAATTATTAATTATT-A
1 AAAAT-A-TA-TAAATATAATAAT-AATA-TAAAATATAAAA-TAATATAAATATAAATAATTAA
*
2008 ATTTAAATTATTAAATAAATAAA-AATA
60 ATAT-AATTA-T-AAT-AATAAATAATA
* * * * *
2035 GAATTAATATAAAAAAATTAA-AATTATATAAAA-A-AAAATTATATAAAAATAATAAATAATTT
1 -AA--AATATATAAATA-TAATAATAATATAAAATATAAAA-TA-ATATAAAT-ATAAATAATTA
* * *
2097 CATATAA--ATAAAAATAAGTATATA
59 AATATAATTATAATAATAAATA-ATA
* *
2121 AAAA-ATA-AAAAATAAATATATAA-AAAAAATA-AAAATAA-ATAAA-A-AAATAA-T-AAT-T
1 AAAATATATAAATAT-AATA-ATAATATAAAATATAAAATAATATAAATATAAATAATTAAATAT
*
2176 AATT-TAA-ATATAAA-ATTA
64 AATTATAATA-ATAAATAATA
* * *
2194 AATATATATAAA-ATTAT-A-AATA-AAAATATAAAATAATTTTATAAAT-TAAATTA-TAAA-A
1 AAAATATATAAATATAATAATAATATAAAATATAAAATAA---TATAAATATAAATAATTAAATA
* * * *
2252 AAATAATAAAAAAAAATAA-A
63 TAATTATAATAATAAATAATA
* * * *
2272 AAATTA-ATGAAATATTATTAAATAATAATATATAATATATAATAAT-TAAATATAAA-AGTTAT
1 AAAATATAT--AA-A-TA-T-AATAATAATATAAAATATAAAATAATATAAATATAAATAATTA-
2334 AATA-AATTAT--TAATATAATAA-A
59 AATATAATTATAATAATA-AATAATA
2356 ATAAATATATAAAT-TAA-AATAATATAAAA-A-AATAATAAT-T-AA-ATAAATAATT-AATA-
1 A-AAATATATAAATATAATAATAATATAAAATATAA-AATAATATAAATATAAATAATTAAATAT
* *
2412 AATTAAATATAAAAAATAATA
64 AATTATA-ATAATAAATAATA
* * *
2433 TAAATAAATAAATA-ATATAAATAATATATATAAT-TAAAAATAATAATAAATA-ATAATATTAT
1 AAAATATATAAATATA-AT-AATAATATA-A-AATAT-AAAATAAT-ATAAATATA-AATAAT-T
*
2495 AAATATTATATTAT-AT-ATAAATATTA
58 AAATA-TA-ATTATAATAATAAATAATA
* * * * * *
2521 AAAAAATA-AAATATTATATTAAATTAATAAAA-AAAAAATTAAAATTAATATAAATTAA--AAA
1 AAAATATATAAATATAATAAT-AA-T-ATAAAATATAAAA-TAATATAAATATAAA-TAATTAAA
* *
2582 TAATAATTAAAAATTATTAATATAATA
61 T-ATAATT-ATAA-TAATAA-ATAATA
* * *
2609 AAAAAAAATTAAATATTAATAATAAT-T--AATATAAAATATATATTATATATAAATAA-TAAAT
1 AAAATATA-TAAATA-TAATAATAATATAAAATATAAAATA-ATA-TAAATATAAATAATTAAAT
* * * *
2670 A-AA-TATCATTATTTATTAATA
62 ATAATTAT-AATAATAAATAATA
2691 ATAAATATAT-AATATAAT--TAA-AT-AAAT-T-AAATAAT-TAAATA-AAATAA--AAATATA
1 A-AAATATATAAATATAATAATAATATAAAATATAAAATAATATAAATATAAATAATTAAATATA
* * * *
2745 ATAAATAAATAAAAAACATTA
65 AT-TAT-AATAATAAATAATA
* *
2766 ATAATATAATAAAATATAATAA-AATAATAAAA-ATAATATAATA-ATAATATAAA-AA-T-AAT
1 AAAATAT-AT-AAATATAATAATAAT-ATAAAATATAAAATAATATA-AATATAAATAATTAAAT
*
2825 ATTAA-TA-AAAAATAATA-AATA
62 A-TAATTATAATAATAA-ATAATA
* * * *
2846 AA--TAAATAAAT-TATTAA-AA-ATAAAA-ATAATAA-AAAATAAAT-TAATATAATAAAATAT
1 AAAATATATAAATATAATAATAATATAAAATATAA-AATAATATAAATATAA-ATAATTAAATAT
* * *
2903 TATTATAA-AAAAAAAAATA
64 AATTATAATAATAAATAATA
* *
2922 AAATTATATAATAAAAATAAGTAATAA-AT-AAATA-AAAAT--TA-AAATCTTAAA-AA-TAAA
1 AAA--ATAT-ATAAATATAA-TAATAATATAAAATATAAAATAATATAAAT-ATAAATAATTAAA
* *
2979 TA-ATATTATATTTATAAA-AATA
61 TATA-ATTATAATAATAAATAATA
* * * * *
3001 TAATTA-ATAATTATATAATAA-AA-AT-AAAT-TAAAATAA-ATTAATATTATTAATTTAAAAA
1 AAAATATATAA--ATATAATAATAATATAAAATATAAAATAATATAAATATAAATAA-TT--AAA
*
3060 TATATATAATAATATATTAAATTATATA
61 TATA-ATTATAATA-A-TAAA-TA-ATA
* * * *
3088 AAAA-A-ATAAA-ATAAAAAT-ATATAAAAAATAAAA-ATATATAATTCA-AAATTATTAAA-AT
1 AAAATATATAAATATAATAATAATATAAAATATAAAATA-ATATAAAT-ATAAATAATTAAATAT
*
3146 AAATATAAT-ATAATATAATA
64 AATTATAATAATAA-ATAATA
* * * * *
3166 ATAAATAATATAATTAAAATTAAGAATA-AAAAT-TAAAATAAAAAAAATATATTATATAA-TAA
1 A-AAAT-ATATAAATATAA-TAATAATATAAAATATAAAATAATATAAATATA--A-ATAATTAA
* * * *
3228 TTTTAATTAAAATATAATATATAATTA
60 ATATAATT-ATA-ATAATAAATAA-TA
* *
3255 TAAAA-ATAAAAATTAATAATTAATAAATATTAAAA-A-AAAATAATATATTATATTAAA-AATT
1 -AAAATATATAAA-T-ATAA-TAAT-AATA-TAAAATATAAAATAATATA-AATA-TAAATAATT
* * **
3316 AAAAAAAAAAATTAA-AATTAAAATAA-A
58 AAATATAATTA-TAATAA-T-AAATAATA
* * *
3343 AAAA-AAAAAAATATAAT-A-AATATAAAAT-TAAATATAAT-TTAA-A-AAATAATTATATATA
1 AAAATATATAAATATAATAATAATATAAAATATAAA-ATAATATAAATATAAATAATTA-A-ATA
* * **
3401 TCAA-AATAATTATAAATTTTA
63 T-AATTATAATAATAAATAATA
* * * *
3422 AAAA-ATA-AAATA-AATAA-AAT-TAATATTAATAAAAAAAAATAAAATATTAATTAATATAAT
1 AAAATATATAAATATAATAATAATATAA-AAT-ATAAAATAATAT-AAATA-TAAATAAT-TAA-
*
3482 ATAAAATTAT--T-A-AAA-AATA
60 ATATAATTATAATAATAAATAATA
* *
3501 AAATTATATAAA-ATAATCATTATATATATAAATATATTATAAATAATAAAAATAATATAATAAA
1 AAAATATATAAATATAAT-A--ATA-ATATAAA-ATA-TA-AAATAATATAAAT-ATA-AAT-AA
* *
3565 TAAAATATATATTATAA-AAAAAATAA-A
56 TTAAATATA-ATTATAATAATAAATAATA
* * * ** * * * *
3592 ATAAA-AAATAAA-ATAATATATAATTTATAAT-TTTAATAAAAAAAATAATATATATTTAAATA
1 A-AAATATATAAATATAATA-ATAATATAAAATATAAAATAATATAAAT-ATAAATAATTAAATA
* **
3654 -AATAAT-ATCAAATAAATTTTA
63 TAATTATAAT--AATAAATAATA
* * * * * *
3675 AATATAAATAAATATAATAATAATA-AATATATAAATTTAAT-TATATA-AAATAATATTATTAT
1 AAAATATATAAATATAATAATAATATAAAATATAAA-ATAATATAAATATAAAT-A-ATTA-AAT
* *
3737 ATAA--AAAATAA-ATATAATA
62 ATAATTATAATAATAAATAATA
* * *
3756 TAAATATATTAAA-AT-ATATATAATAATAAAA-A-AAAA-AA-A-AAA-ATAAATTACTAAAT-
1 AAAATATA-TAAATATAATA-ATAAT-ATAAAATATAAAATAATATAAATATAAATAATTAAATA
* *
3812 T-ATATATAAAAATAAACAAGTA
63 TAAT-TATAATAATAAATAA-TA
* * * *
3834 ATAAT-TATAAATA-AA-AAT-ATAAAAAAATTATATAAATAA-A-AAATATAAAAAAATAAATA
1 AAAATATATAAATATAATAATAAT-ATAAAA-TATA-AAATAATATAAATATAAATAATTAAAT-
* * * *
3893 ATAA-TGTAATAATTAGTTATA
62 ATAATTATAATAATAAATAATA
* * * *
3914 TAAAATATA-AAA-ATAAT-AT-TTA-AAAATAATAAATTAAATAATAAAAATAAATATAATAAA
1 -AAAATATATAAATATAATAATAATATAAAAT-ATAAAAT-AAT-ATAAATATAAATA-ATTAAA
**
3974 TA-AATTA-AA-AA-ATTTAATA
61 TATAATTATAATAATAAATAATA
*
3993 TAAAATA-A-AAATA-AATAA-AAT-T-AAATAT-AAATAAATATAAAATATTAATATAATTAAT
1 -AAAATATATAAATATAATAATAATATAAAATATAAAAT-AATAT-AAATA-TAA-ATAATTAAA
* * *
4051 TATAA-TAAAATATTAATTTAATA
61 TATAATTATAATAATAA-ATAATA
* * * *
4074 TATAAA-AT-T-AATTTAATATTATTTA-AAAATATAAAATAA-AAAAATAT-AA-AA-TAAATA
1 -A-AAATATATAAATATAATAATA-ATATAAAATATAAAATAATATAAATATAAATAATTAAATA
*
4131 T-ATTTTAA-AATATAA-AAT-
63 TAATTATAATAATA-AATAATA
* * * *
4149 AAAATATATATAATATAA-AAAAATA-AAAATTTTAAA-AATTTAATATATAGAAT-ATTATAA-
1 AAAATATATA-AATATAATAATAATATAAAATATAAAATAATATAA-ATATA-AATAATTA-AAT
* *
4209 A-AA-AAT-ATAAAAAATAAATA
62 ATAATTATAATAATAAAT-AATA
* * * *
4229 AAAATATAAAAATATATATTAA-AATATTAAATA-AATAT-ATATAAATAAAAATAA-TAAATAA
1 AAAATATATAAATATA-A-TAATAATATAAAATATAAAATAATATAAATATAAATAATTAAAT-A
*
4290 TAA-TATAATTATAAAT-ATA
63 TAATTATAATAATAAATAATA
* * * * *
4309 ATAAATA-A-ATATATAATAA-ATTATAAACA-A-AAAAT-TTATATATAAAAATAATATAAATA
1 A-AAATATATAAATATAATAATAATATAAA-ATATAAAATAATATAAATATAAATAAT-TAAATA
* * *
4368 -AA-TATATATAAAAAAAAATT
63 TAATTATA-ATAATAAATAATA
* * *
4388 AAAA-A-ATAATTAT-ATAAAAATAT-AAA-A--AAATAATAT-AATA-AATAAAATTAAA-AT-
1 AAAATATATAAATATAATAATAATATAAAATATAAAATAATATAAATATAA-ATAATTAAATATA
* * * *
4442 CTTATAAAAAAAAAAAAATA
65 ATTAT-AATAATAAATAATA
* * * *
4462 ATAATATATTAATATAATAATAATAAATTAAATATAATAAAAAAATAATATAATAAAAAT-ATTA
1 AAAATATATAAATATAATAATAAT--A-TAAA-AT-ATAAAATAAT-ATA-AATATAAATAATTA
* *
4526 ATATAAAATTATATTATTAATTAATATAATT
59 A-ATATAATTATA--A-TAA-TAA-ATAATA
* * *
4557 AAATTATATAAA-A-AA-AATAAT-TAAAAATATAAATATAATA-AAA-AAAAAT-ATTAAAAAT
1 AAAATATATAAATATAATAATAATAT-AAAATATAAA-ATAATATAAATATAAATAATTAAATAT
* * *
4615 -ATTAT-ATATTAATATTATT
64 AATTATAATAATAA-ATAATA
* * * *
4634 ATAATATA-AATTAATTATAAATAAATATATAATATTAAAA-ATATATAAAT-TAAATAA-TATA
1 AAAATATATAAAT-ATAAT-AAT-AATATAAAATA-TAAAATA-ATATAAATATAAATAATTA-A
** *
4695 ATATAAAAATACATAAATAAAAAATTA
60 ATATAATTATA-AT-AATAAATAA-TA
* * * * * *
4722 AAAGAAAAATAAA-ATTATTATAATAAAAAAATATTAATAAT-ATTTAAA-A-AAATAATATAAA
1 AAA-ATATATAAATATAATAATAAT-ATAAAATA-TAA-AATAATATAAATATAAATAAT-TAAA
4783 -A-AA-T-T--TAATAAATAA-A
61 TATAATTATAATAATAAATAATA
* * *
4799 AATATATATTAAAT-TAA-AAAAAT-TAAATATATATATAATAAT-TAAA-AT-AATAA-AAAAT
1 AAAATATA-TAAATATAATAATAATATAAA-ATATA-A-AATAATATAAATATAAATAATTAAAT
* *
4857 AAAAAT-TAATAA-AAGATAATA
62 ATAATTATAATAATAA-ATAATA
* *
4878 ATAAAT-TAAAAAAATTATATAATAATAT-AAATATAAAAATATATTATATAATA-ATAATAATT
1 A-AAATATATAAATA-TA-ATAATAATATAAAATAT-AAAATA-A-TATA-AATATA-AATAATT
4940 AAAT-T-A-TAT-A-AATAAATATTATA
58 AAATATAATTATAATAATAAATA--ATA
* * *
4963 TATAATATAATAAA-AT-ATATATATTATAAAATAT-AAAT-AT-TAAATATAATTAA-TAACAT
1 -AAAATAT-ATAAATATAATA-ATAATATAAAATATAAAATAATATAAATATAAATAATTAA-AT
* *
5022 AT-ATATATTATTATAAATAA-A
62 ATAAT-TATAATAATAAATAATA
* * * *
5043 TAAATAT-TTAATA-AATAATATTAT-AAA-AT-AAATAA-ATATATATAAATAA-TAAATATAA
1 AAAATATATAAATATAATAATAATATAAAATATAAAATAATATAAATATAAATAATTAAATATAA
5101 --A-AATAAT-AATAA-A
66 TTATAATAATAAATAATA
* * * * *
5114 AAAATATA-ATAATAATAAATAA-AGTTAAAAAATTATAAATAAAAAATAAATATATAATAAATA
1 AAAATATATA-AAT-AT-AATAATA-ATATAAAA-TATAAA-ATAATATAAATATA-AATAATTA
* * *
5177 AA-ATAAATAT-ATAAAAAATCATA
59 AATATAATTATAATAATAAATAATA
* * * * * *
5200 ATAAA-AAATAAATA-ATTAAT-ATAT-AAA-A-AAAATAATA-AAATAAAAATAA-AAAAAAAA
1 A-AAATATATAAATATAATAATAATATAAAATATAAAATAATATAAATATAAATAATTAAATATA
*
5257 ATTAAAAT-A-AAATAATA
65 ATTATAATAATAAATAATA
** * * * *
5274 ATTA-AT-TAAATAT--TAA-AATATAAAATATATAAATAA-ATAAAAATAATTATTTAATTATA
1 AAAATATATAAATATAATAATAATATAAAATATA-AAATAATATAAATATAAATAATTAAATATA
5333 A-TAT-A-AA-AAAT-ATA
65 ATTATAATAATAAATAATA
* * * * *
5347 AAAATATAT--ATAT--T-TTATTATAAAA-ATAAAATAAATATATATAAAAATAAATATAATAT
1 AAAATATATAAATATAATAATAATATAAAATATAAAAT-AATATAAATATAAATAATTA-AATAT
* *
5406 -ATTAAAATAAAATAATAATA
64 AATTATAATAATA-AATAATA
* *
5426 AAAATATTATAAA-ATAATTAATAATAT-AAATA-ATAAATATCTATAAAATAAAATAAAAAATT
1 AAAATA-TATAAATATAA-TAATAATATAAAATATA-AAATA-ATAT-AAAT---ATAAATAATT
* *
5488 AAAAATAATTTATAA-AAAAAATAA-A
58 AAATATAA-TTATAATAATAAATAATA
* * * * * * *
5513 ATAATAAATTAATATAATAATAAATTTAACATA-ATAATAA-A-AAATTATATATAAATTACAA-
1 AAAATATATAAATATAATAAT-AATATAAAATATAAAATAATATAAA-TATAAAT-AATTA-AAT
* *
5574 ATAA-AAT-ATAA-ATATAATA
62 ATAATTATAATAATAAATAATA
* *
5593 AAAATAAAT-AATATAAAAAT-AT-TAAAA-A-AAAATTTAATTATAAAT-T--AT-ATTAAATA
1 AAAATATATAAATATAATAATAATATAAAATATAAAA--TAA-TATAAATATAAATAATTAAAT-
*
5649 ATAATT-TAGA-AAT-AATATTA
62 ATAATTATA-ATAATAAATAATA
* * * * * *
5669 TATAT-TATATATATAAAAAATAAT-TAAAATA-AATA-AATAT-AAT-TTAAT-ATTAAAATAT
1 AAAATATATAAATAT-AATAATAATATAAAATATAAAATAATATAAATATAAATAATT-AAATAT
*
5727 AAATTATAATAAATATATAA-A
64 -AATTATAAT-AATAAATAATA
* * * * * * *
5748 TAAATAGAATAAA-ATTATTATAATA-AAAATAAATAAATAAAATTATAATA-AAATAAAATAAA
1 AAAATA-TATAAATATAATAATAATATAAAATATA-AAATAATA-TA-AATATAAAT-AATTAAA
*
5810 TA-AATAAT-ATAAATAAATAATA
61 TATAATTATAAT-AATAAATAATA
* * * * * * *
5832 AAAA-ATA-AATTATAAAAAAAATATAAAAAATAAATATAATAT-TATATAAA-AAATAATTA-A
1 AAAATATATAAATATAATAATAATATAAAATATAAA-ATAATATAAATATAAATAATTAAATATA
* *
5892 ATTAAAAAAATTAAA-ATATA
65 ATTATAATAA-TAAATA-ATA
* * * *
5912 AAAATATATAAATAATATTATATTTAATAATAAATATTTATAATAA-AT-AATAAAAATAAAGTT
1 AAAATATATAAAT-ATA--ATA-ATAAT-ATAAA-ATATAAAATAATATAAATATAAAT-AA-TT
* *
5975 AATTATAAAATTA-AAT-ATAATTTAATA
58 AA--ATATAATTATAATAATAA-ATAATA
* * * * *
6002 AAAATATAATTAATTTTA-AAT-ATATTAATATTATTAAAA-AATA-ATAATAAAAAT-ATTAAA
1 AAAATAT-ATAAATATAATAATAATA-TAA-AATA-TAAAATAATATA-AATATAAATAATTAAA
*
6062 -ATTAA-TATAAT-ATAATTAA-A
61 TA-TAATTATAATAATAAATAATA
* * * * * *
6082 ATAATA-ATAAA-ATATGTAA-AATATTAAAAAATAAATAATAAATTTAAATATAAAAAAAAATA
1 AAAATATATAAATATA-ATAATAATA-TAAAATAT-AA-AAT-AATATAAATAT--AAATAATTA
* *
6144 AAAAT-ATTATAAATAATATATATATA
59 AATATAATTAT-AATAATAAATA-ATA
** * * * *
6170 AATTTAATAATAAATA-AATAATTAAATTAAATATAAAATTAATTAAAAAATATAAA-AA--AAA
1 AAAAT-AT-ATAAATATAATAATAATATAAAATATAAAA-TAA-T-ATAAATATAAATAATTAAA
*
6231 TAATAA-TATAATTTAAATAAAT-ATT
61 T-ATAATTATAA--T-AATAAATAATA
* * * **
6256 ATAATA-ATAATTATAA-AATTAA-ATAAAA-ATTAATAATTATATTTATATATAA-AA-TAAA-
1 AAAATATATAAATATAATAA-TAATATAAAATA-TAA-AATAATATAAATATA-AATAATTAAAT
* * *
6314 ATAATAATAAT-TTAATTAATA
62 ATAATTATAATAATAAATAATA
*** * *
6335 AATCAATATATTAAATA-AA-AAT--T-TTTCATATTAAATAAT-T-AATAT--AC-A-TAAATA
1 AA--AATATA-TAAATATAATAATAATATAAAATATAAAATAATATAAATATAAATAATTAAATA
* * *
6389 TCATTAATAATATTATATAA-A
63 TAATT-ATAATAATAAATAATA
* * * **
6410 ATAATAT-TAAA-AT-ATAATATATTTAAAAAAT-AAATAAT-TAAATAATAAAATATAAAAAAT
1 AAAATATATAAATATAATAATA-ATATAAAATATAAAATAATATAAAT-AT-AAATA-ATTAAAT
*
6470 ATAA-TA-AATTATAAAT-ATA
62 ATAATTATAATAATAAATAATA
* * *
6489 AAAATA-A-ATATAAAAT-ATAAT-T-AATTA-AAAATAA-ATAAATAT-AATAATTAAATATTA
1 AAAATATATAAATATAATAATAATATAAAATATAAAATAATATAAATATAAATAATTAAATA-T-
*
6546 AAATTAATAATTAATTAATATATA
64 -AATT-ATAA-TAATAAATA-ATA
** * *
6570 ATTAAAT-T-TAAAT-T-A-AATAATATAATTTTAATAAAATAATTATAATTA-AAAAAATAATA
1 A--AAATATATAAATATAATAATAATATAA-AAT-ATAAAATAA-TATAAATATAAATAAT--TA
* *
6629 GAATTTAATTAT--TAAAAAATAATACAA
59 -AATATAATTATAATAATAAATAAT---A
* * ** * * * *
6656 ATAATATATATAAATAAAATATATTATATATTATATAAAAATATATATAAAAAAAAAAAAGTAAT
1 A-AA-ATATATAAATATAATA-ATAATATAAAATAT-AAAATA-ATATAAATATAAATAATTAA-
* *
6721 AAATAAATTAT--TAATTAAAAAATA
60 ATAT-AATTATAATAA-TAAATAATA
* * * *
6745 ATAATAGATAAA-ATAA-AAAAAT-TATAAATATAAAAAGAATA-ATAATAT-AAT-ATT-AATA
1 AAAATATATAAATATAATAATAATATA-AAATAT-AAAATAATATA-AATATAAATAATTAAATA
6803 TAATAATATAA-AATAAATATAAATA
63 TAAT--TATAATAAT-AA-AT-AATA
* * *
6828 AAAATATATTATTATATAATAAATAATAT-AAATATATATATAA-A-AAATATATAT-ATTAAAT
1 AAAATATA-TA-AATATAAT-AATAATATAAAATATA-AAATAATATAAATATAAATAATTAAAT
6889 AATAA-TA-AAT-A-AAATAAT-
62 -ATAATTATAATAATAAATAATA
* * * * *
6907 TAATTATAATAAA-A-AATAA-AATAT-ATATATAAATATAATATAAAT-TAAAAAAAATATAAT
1 AAAATAT-ATAAATATAATAATAATATAAAATATAAA-ATAATATAAATAT-AAATAATTA-AAT
* * *
6967 ATAA-TA-AAAATTAAAAAATA
62 ATAATTATAATAATAAATAATA
* * * * * *
6987 ATAATATAATAAAAATAATTATATTATTAAAA-AT-AAATAA-ATAAATAAAAAAAATTATAATA
1 AAAATAT-ATAAATATAATAATAATA-TAAAATATAAAATAATATAAATATAAATAATTA-AATA
* *
7049 TAAATTAATATTTATATTATAA-AATG
63 T-AATT-ATA---ATAATA-AATAATA
* * *
7075 AATATATAATAAATATAATAAAATATATTATAAATATATAAAA-AATATTTAAATTTTTAAAAAA
1 AAAATAT-ATAAATATAAT--AATA-A-TATAAA-ATATAAAATAATA--TAAA--TATAAATAA
*
7139 TATAAATAATAATAATAATAAT-AATATATA
56 T-TAAAT-ATAATTATAATAATAAATA-ATA
* * * * *
7169 TAAAT-TAGATAATATAAATATATAATA-AAAAT-T--AATAA-ATAAAAATATATAAAT-AATA
1 AAAATATATA-AATAT-AATA-ATAATATAAAATATAAAATAATATAAATATAAATAATTAAATA
* * *
7227 TAA-TATTAAAAAAAAAT-TTA
63 TAATTA-TAATAATAAATAATA
* * * *
7247 ATAATATATAAAATAATTTATAAAAATTATAAAA-A-AATAATTAATATAAA-ATTAAAAAATTA
1 AAAATATAT-AAAT-A-TAATAATAA-TATAAAATATAA-AA-TAATATAAATA-TAAATAATTA
*
7309 AAT-TAAATTATAAT-AT-AGTAACT-
59 AATAT-AATTATAATAATAAATAA-TA
* * *
7332 ATAA-AT-TAAA-A-AA-AATAATATAAATATATAAAAAAATAT-AATAT-TATAATTATAA-A-
1 AAAATATATAAATATAATAATAATATAAA-ATATAAAATAATATAAATATAAATAATTA-AATAT
7388 AATTAGT-A-AATATAAT-ATA
64 AATTA-TAATAATA-AATAATA
* * * **
7407 ATATTATATAAA-A-AATAA-AA-A-AAAATATTATTTAATAATAAATATTAAAT-A-TAAAT-T
1 AAAATATATAAATATAATAATAATATAAAATATAAAATAAT-ATAAATA-TAAATAATTAAATAT
7464 AATTA-ATATAA-ATAATAATA
64 AATTATA-ATAATA-AATAATA
* * * * * *
7484 AAAAT-TAAAAAAATAATAATTATAAAAAATTATAATATAATAT-AATATAAATAATT-TATATA
1 AAAATATATAAATATAATAATAATATAAAA-TATAAAATAATATAAATATAAATAATTAAATATA
7546 A-TA-AATAATAAAATAAATA
65 ATTATAATAAT-AAAT-AATA
*** * * * * * *
7565 TTTATATTTAAATA-AATAAATTAAAAT-AATTTTAAAATATTATATATAATTTAAAAAATATAA
1 AAAATATATAAATATAAT-AA-TAATATAAAATATAAAATA--ATATA-AATATAAATAAT-TAA
* *
7628 AAATAAATATTTAAATAATAAAAATAATA
60 ATAT-AAT-TAT-AATAAT--AAATAATA
* *
7657 ATAATATATAAAAAATTATAATAAATAAATATTAAAATA-AAAATTATAT-AATAATAAA-ATAT
1 A-AA-ATAT-ATAAA-TATAAT-AAT-AATA-TAAAATATAAAATAATATAAAT-ATAAATA-AT
* *
7719 TTAATA-AA-TATTATTAATAAATTAATTA
57 TAAATATAATTA-TAATAATAAA-TAA-TA
* * *
7747 AAAATATATATATAATTAATAATAA-ATAAATATTATATATATAATAAATAAATA-ATATAATTA
1 AAAATATATAAAT-A-TAATAATAATATAAA-A-TATA-AAATAAT--ATAAATATAAATAATT-
* *
7810 AAAAAAAATT-TAATAATAAATAA-A
58 AAATATAATTATAATAATAAATAATA
* * * *
7834 ATTAA-AT-TAATTATATTATATAA-ATATAAAT-T-TAATAATAATAAATA-ATAATAATTTAA
1 A-AAATATATAAATATAATA-ATAATATA-AAATATAAAATAAT-ATAAATATA-AATAA-TTAA
* *
7893 ATA-AA-AAAAATTAATAAA-AATA
60 ATATAATTATAA-TAATAAATAATA
* ** *
7915 AAAA-ATATAAA-ATTAA-AA-AAT-TAAATTAT-ATGT-ATA-AAATATAAATTAAATATAATA
1 AAAATATATAAATA-TAATAATAATATAAAATATAAAATAATATAAATATAAA-TAATTA-AATA
*
7972 TATTTA-AAT-AT-AATAATA
63 TAATTATAATAATAAATAATA
* * * *
7990 ATAAAT-TATATAT-TAA-AAT-A-ATAAAATA-ATAATAATA-AATTAATAAATTATATAAATA
1 A-AAATATATAAATATAATAATAATATAAAATATAAAATAATATAAAT-ATAAATAAT-TAAATA
* * * * *
8048 AAATTATAAAAATTATTTATA
63 TAATTATAATAATAAATAATA
* * *
8069 TAAA-ATATAAATATAAT-AT-ATA-AAAATATAAAATAA-ATATAATAT-AATAA-TATTATTT
1 AAAATATATAAATATAATAATAATATAAAATATAAAATAATATA-AATATAAATAATTA-AATAT
8127 AA-TATATATAATAAATTAATTA
64 AATTATA-ATAATAAA-TAA-TA
** * * ** *
8149 TTAATTTAATAAATAATTAATATATTATTATATTATATAAAA-AAAATAATATTATATAA-AATT
1 AAAATAT-ATAAAT-A-TAATA-A-TAATATAAAATATAAAATAATATAA-A-TATA-AATAATT
8212 --ATATAATTA-ATATAATAAATAAT-
58 AAATATAATTATA-ATAATAAATAATA
* * * *
8235 ATAATATAATAAA-ATAA-AATAATATAGTAATAT-TAATAA-ATATATTATAAA-AA--AATAT
1 AAAATAT-ATAAATATAATAATAATATA-AAATATAAAATAATATA-AATATAAATAATTAA-AT
*
8293 TTAA-TATAA-AA-AAAT-ATA
62 ATAATTATAATAATAAATAATA
* * * *
8311 AAAAT-TATAAATA-ATTAA-AATATAAAATAATATAATAAT-TAAAAATAAAAAATTAAA-A-A
1 AAAATATATAAATATAATAATAATATAAAAT-ATAAAATAATATAAATATAAATAATTAAATATA
* * * *
8370 AATATAAAAAAAAATTATA
65 ATTATAATAATAAATAATA
* * * * *
8389 AATAA-A-ATAAAAATAATAAAAAAATTAAAAAATAAATTAATAATATTAAAAATAAA-AATATA
1 AA-AATATATAAATATAATAATAATA-TAAAATAT-AA--AATAATA-TAAATATAAATAAT-TA
* * *
8451 AATAT-ATAAATAA-AATATTATATTA
59 AATATAAT-TATAATAATA-AATAATA
* * * * ** * *
8476 AAAAAATTTAATTTTATAAT-ATTATATAAAATATATTATAA-AT-TA-ATAAATAATAAAATAA
1 AAAATATATAA--ATATAATAATAATATAAAATATAAAATAATATAAATATAAATAATTAAAT-A
* *
8537 TTATTTATAATAATATATAATA
63 -TAATTATAATAATAAATAATA
* * *
8559 AAAA-ATATAAATA-AATAA-AATTAAATAAATATAAAAT-ATA-ATAATAAAACAAAATATATA
1 AAAATATATAAATATAATAATAA-TATA-AAATATAAAATAATATA-AATATAA-ATAAT-TA-A
* *
8619 ATATAATAATGATTAA-AAAT-ATA
60 ATATAATTAT-AATAATAAATAATA
* * * *
8642 TAAA-ATA-AAATATAAAAATAATA-AAAAAATAATATAATATAAATA
1 AAAATATATAAATATAATAATAATATAAAATATAAAATAATATAAATA
8687 AATAGCAATT
Statistics
Matches: 5411, Mismatches: 921, Indels: 2135
0.64 0.11 0.25
Matches are distributed among these distances:
70 10 0.00
71 41 0.01
72 61 0.01
73 115 0.02
74 182 0.03
75 280 0.05
76 305 0.06
77 328 0.06
78 294 0.05
79 381 0.07
80 318 0.06
81 392 0.07
82 330 0.06
83 370 0.07
84 284 0.05
85 258 0.05
86 270 0.05
87 294 0.05
88 247 0.05
89 142 0.03
90 146 0.03
91 119 0.02
92 91 0.02
93 43 0.01
94 36 0.01
95 24 0.00
96 11 0.00
97 12 0.00
98 20 0.00
99 7 0.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.34
Consensus pattern (83 bp):
AAAATATATAAATATAATAATAATATAAAATATAAAATAATATAAATATAAATAATTAAATATAA
TTATAATAATAAATAATA
Found at i:1726 original size:14 final size:14
Alignment explanation
Indices: 1691--1728 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
1681 TTAAAAATTT
1691 TAATATAAATAAAA
1 TAATATAAATAAAA
*
1705 TAAAATAAATAATAA
1 TAATATAAATAA-AA
1720 T-ATATAAAT
1 TAATATAAAT
1729 TTTAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 18 0.86
15 3 0.14
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
TAATATAAATAAAA
Found at i:1734 original size:49 final size:50
Alignment explanation
Indices: 1604--1736 Score: 138
Period size: 49 Copynumber: 2.7 Consensus size: 50
1594 ATTATAAATT
1604 TTAAGAATAAAATAAATAAT--TATT-AA-TTTAAAATATTTTAATATATAA
1 TTAA-AATAAAATAAATAATAATATTAAATTTTAAAA-ATTTTAATATATAA
* * * *
1652 TTAAAATTATAT-AAT-ATAATTTTATAATATTAAAAATTTTAATATA-AA
1 TTAAAATAAAATAAATAATAATATTA-AATTTTAAAAATTTTAATATATAA
1700 -TAAAATAAAATAAATAATAATATATAAATTTTAAAAA
1 TTAAAATAAAATAAATAATAATAT-TAAATTTTAAAAA
1737 AATAATTTTT
Statistics
Matches: 69, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
45 2 0.03
46 3 0.04
47 18 0.26
48 9 0.13
49 29 0.42
50 8 0.12
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.41
Consensus pattern (50 bp):
TTAAAATAAAATAAATAATAATATTAAATTTTAAAAATTTTAATATATAA
Found at i:1778 original size:22 final size:22
Alignment explanation
Indices: 1737--1778 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
1727 ATTTTAAAAA
**
1737 AATAATTTTTCTTAAAAATATT
1 AATAATTTTTAATAAAAATATT
*
1759 AATAATTTTTAATAATAATA
1 AATAATTTTTAATAAAAATA
1779 ATATAAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
AATAATTTTTAATAAAAATATT
Found at i:1802 original size:26 final size:27
Alignment explanation
Indices: 1772--2941 Score: 78
Period size: 26 Copynumber: 42.4 Consensus size: 27
1762 AATTTTTAAT
* *
1772 AATAATAATATAAAAT-T-ATATTTATA
1 AATAATAA-ATAAAATATAAAAATTATA
1798 AATAA-AAATAAAATATAAAAATTATA
1 AATAATAAATAAAATATAAAAATTATA
* *
1824 AATAATTAAATTAATTAATAATATAATTA-A
1 AATAA-TAAATAAAAT-ATAA-A-AATTATA
* * * *
1854 AAAAATAATATATAATA-AATAATAATA
1 AATAATAA-ATAAAATATAAAAATTATA
*
1881 AAT-ATAAATATATAAT-TAATAATTA-A
1 AATAATAAATA-A-AATATAAAAATTATA
*
1907 AA-AAT-AATAAAA-ATTAAAA--ATA
1 AATAATAAATAAAATATAAAAATTATA
1929 AAT--TAAA-AAAATAAATAAAAA-TATA
1 AATAATAAATAAAAT--ATAAAAATTATA
* * * **
1954 ATTACTAAATAAAA-ATGATTATTA-A
1 AATAATAAATAAAATATAAAAATTATA
* * ** *
1979 AAAAA-AATTAAAATAATTATTAATTATT
1 AATAATAAATAAAAT-A-TAAAAATTATA
* *
2007 AAT-TTAAATTATTAAATAAATAAAAA-TAGA
1 AATAATAAA-TA--AAAT--ATAAAAATTATA
* *
2037 ATTAATATAA-AAAA-ATTAAAATTATA
1 AATAATA-AATAAAATATAAAAATTATA
* *
2063 TAA-AA-AAA-AATTATATAAAAATAATA
1 -AATAATAAATAA-AATATAAAAATTATA
** * *
2089 AATAATTTCATATAA-ATAAAAATAAGTA
1 AATAA-TAAATAAAATATAAAAATTA-TA
* * * *
2117 TATAAAAAATAAAAAATAAATA-TATA
1 AATAATAAATAAAATATAAAAATTATA
*
2143 AA-AA-AAATAAAAATAAATAAAAA-AAT-
1 AATAATAAAT-AAAAT--ATAAAAATTATA
* *
2169 AATAATTAATTTAAATAT-AAAATTA-A
1 AATAA-TAAATAAAATATAAAAATTATA
*
2195 ATATATATAAAATTATAA-ATAAAAA-TATAA
1 A-ATA-AT-AAA-TAAAATATAAAAATTAT-A
* *
2225 AATAATTTTATAAATTAAATTATAAAAA-AAT-
1 AATAA-----TAAA-TAAAATATAAAAATTATA
2256 AATAA-AAA-AAAATA-AAAAATTAATGA
1 AATAATAAATAAAATATAAAAATT-AT-A
*
2282 AATATTATTAAATAATAATAT-ATAA-TATA
1 AATA--A-TAAATAA-AATATAAAAATTATA
2311 TAATAATTAAATATAAAAGTTATAATAAATTATTA
1 -AATAA-T-AA-ATAAAA-T-ATAA-AAATTA-TA
*
2346 ATATAATAAA-ATAAATATATAAATTA-A
1 A-ATAATAAATA-AAATATAAAAATTATA
* *
2373 AATAATATAAAAAAATAATAATTAAATAAATA
1 AATAATA-AATAAAAT-ATAA--AAAT-TATA
* *
2405 ATTAATAAATTAAATATAAAAA--AT-
1 AATAATAAATAAAATATAAAAATTATA
*
2429 AAT-ATAAAT-AAATA-AATAA-TATA
1 AATAATAAATAAAATATAAAAATTATA
* * * *
2452 AATAATATATATAATTAAAAATAATAATA
1 AATAATAAATA-AAATATAAA-AATTATA
**
2481 AATAATAATATTATAAATATTATATTATATATA
1 AATAATAA-A-TA-AAATA-TA-AAAAT-TATA
* *
2514 AATATTAAA-AAAATA-AAATATTAT-
1 AATAATAAATAAAATATAAAAATTATA
* *
2538 ATTAAATTAATAAAA-A-AAAAATTA-A
1 AAT-AATAAATAAAATATAAAAATTATA
* *
2563 AATTAATATAAATTAAAA-ATAATAATTAAA
1 AA-T-A-ATAAA-TAAAATATAAAAATTATA
* *
2593 AATTATTAATATAATAA-AAAAAAATTA-A
1 AA-TAATAA-ATAA-AATATAAAAATTATA
2621 ATATTAAT-AATAATTAATAT-AAAATATATA
1 A-A-TAATAAATAA--AATATAAAAAT-TATA
* *
2651 TTATATATAAATAATAA-ATAAATATCATTATTT
1 -AATA-ATAAATAA-AATATAAA-A--ATTA-TA
*
2684 ATTAAT-AATAAATATATAATATAA-T-TA
1 AATAATAAATAAA-ATATAA-A-AATTATA
* *
2711 AATAAATTAAATAATTAA-AT-AAAATAAAA
1 AAT-AA-TAAATAA--AATATAAAAATTATA
* *
2740 ATATAATAAAT-AAATA-AAAAA-CATT
1 A-ATAATAAATAAAATATAAAAATTATA
*
2765 AATAATATAATAAAATATAATAAAATAATAAA
1 AATAATA-AATAAAATAT-A-AAAAT--TATA
*
2797 AATAATATAATAATAATATAAAAATAAT-
1 AATAATA-AATAA-AATATAAAAATTATA
*
2825 ATTAAT-AA-AAAATAATAAATAA--ATA
1 AATAATAAATAAAAT-ATAAA-AATTATA
* * *
2850 AATAAATTATTAAAA-ATAAAAATAATA
1 AAT-AATAAATAAAATATAAAAATTATA
* *
2877 AAAAATAAATTAATATAATAAAATATTAT-
1 AATAATAAA-TAAAAT-ATAAAA-ATTATA
* *
2906 TATAA-AAA-AAAAAAT-AAAATTATA
1 AATAATAAATAAAATATAAAAATTATA
2930 TAATAA-AAATAA
1 -AATAATAAATAA
2942 GTAATAAATA
Statistics
Matches: 843, Mismatches: 132, Indels: 338
0.64 0.10 0.26
Matches are distributed among these distances:
21 10 0.01
22 17 0.02
23 25 0.03
24 54 0.06
25 90 0.11
26 115 0.14
27 89 0.11
28 103 0.12
29 103 0.12
30 78 0.09
31 59 0.07
32 57 0.07
33 33 0.04
34 4 0.00
35 6 0.01
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.33
Consensus pattern (27 bp):
AATAATAAATAAAATATAAAAATTATA
Found at i:1858 original size:40 final size:38
Alignment explanation
Indices: 1798--8687 Score: 440
Period size: 38 Copynumber: 181.1 Consensus size: 38
1788 TATATTTATA
* * *
1798 AATAA-AAATA-AAATATAAAAATTATAAATAATTAAATT
1 AATAATAAATATAATTAAAAAAATAATAAATAA-TAAA-T
*
1836 AATTAAT-AATATAATTAAAAAAATAATATATAATAAAT
1 AA-TAATAAATATAATTAAAAAAATAATAAATAATAAAT
*
1874 AATAATAAATATAAATATATAATTAATAATTAAAAAATAATAAA-
1 AATAATAAATAT-AAT-TA-AA--AA-AA-TAATAAATAATAAAT
1918 AATTAA-AAATA-AATTAAAAAAATAAATAAA-AATATAATT
1 AA-TAATAAATATAATTAAAAAAAT-AATAAATAATA-AA-T
* * * *
1957 ACTAAATAAAAATGATTATTAAAAAAA-AATTAAAATAATTATT
1 AAT-AAT--AAAT-ATAATTAAAAAAATAA-T-AAATAATAAAT
* * * * *
2000 AATTATTAATTTAAATTATTAAATAAATAA-AAAT-AGAATT
1 AATAATAAATAT-AATTA--AAA-AAATAATAAATAATAAAT
* ** *
2040 AAT-ATAAA-AAAATTAAAATTAT-ATAAA-AAAAAAT
1 AATAATAAATATAATTAAAAAAATAATAAATAATAAAT
* * **
2074 TAT-ATAAAAATAA-TAAATAATTTCATATAAATAA-AAAT
1 AATAATAAATATAATTAAA-AAAAT-A-ATAAATAATAAAT
* *
2112 AAGTATATAAA-A-AA-T-AAAAAATAAATATATAA-AAAA
1 AA-TA-ATAAATATAATTAAAAAAAT-AATAAATAATAAAT
*
2148 AATAA-AAATA-AA-TAAAAAAATAATAATTAATTTAAAT
1 AATAATAAATATAATTAAAAAAATAATAAATAA--TAAAT
* *
2185 ATAAAATTAAATATATATAAAATTATAAATAA-AAAT-ATAAAAT
1 A-ATAA-TAAATATA-ATTAAA--A-AAATAATAAATAAT-AAAT
* * *
2228 AATTTTATAAAT-TAAATTATAAAAAAATAATAAAAAAAAATAAAA
1 AA--TAATAAATAT-AA-T-TAAAAAAATAAT---AAATAATAAAT
* * * *
2273 AATTAATGAAATATTATT-AAATAATAATATATAATATAT
1 AA-TAAT-AAATATAATTAAAAAAATAATAAATAATAAAT
*** * *
2312 AATAATTAAATAT-A--AAAGTTATAATAAATTATTAAT
1 AATAA-TAAATATAATTAAAAAAATAATAAATAATAAAT
* * * *
2348 -ATAATAAA-ATAAATATATAAATTA-AAATAAT--AT
1 AATAATAAATATAATTAAAAAAATAATAAATAATAAAT
* *
2381 AA-AA-AAATAATAATTAAATAAATAATTAATAAATTAAAT
1 AATAATAAAT-ATAATTAAAAAAATAATAAAT-AA-TAAAT
* *
2420 -ATAAAAAATA-ATA-TAAATAAATAA-ATAAT-ATAAAT
1 AATAATAAATATA-ATTAAAAAAATAATA-AATAATAAAT
2455 AAT-AT--ATATAATTAAAAATAATAATAAATAAT-AAT
1 AATAATAAATATAATTAAAAA-AATAATAAATAATAAAT
* * *
2490 -ATTATAAATATTATATTATATATAAAT-ATTAA-AA-AAAT
1 AATAATAAATA-TA-ATTA-A-AAAAATAATAAATAATAAAT
* **
2528 AA-AAT-ATTAT-ATTAAATTAATAA-AAA-AA-AAATT
1 AATAATAAATATAATTAAAAAAATAATAAATAATAAA-T
*
2561 AA-AATTAATATAAATT-AAAA-ATAAT-AAT--TAAA-
1 AATAATAAATAT-AATTAAAAAAATAATAAATAATAAAT
* * *
2593 AATTATTAATATAA-TAAAAAAA-AATTAAAT-ATTAAT
1 AATAATAAATATAATTAAAAAAATAA-TAAATAATAAAT
* * * * *
2629 AATAATTAATAT-A--AAATATATATTATAT-ATAAAT
1 AATAATAAATATAATTAAAAAAATAATAAATAATAAAT
* * **
2663 AATAAATAAATATCATTATTTATTAATAATAAAT-ATATAAT
1 AAT-AATAAATATAATTA--AAAAAATAATAAATAATA-AAT
* *
2704 -ATAATTAAATA-AATTAAATAATTAAATAAAATAA-AAAT
1 AATAA-TAAATATAATTAAAAAAAT-AAT-AAATAATAAAT
2742 -ATAATAAATA-AA-TAAAAAACATTAATAATATAATAAA-
1 AATAATAAATATAATTAAAAAA-A-TAATAA-ATAATAAAT
2779 ATATAATAAA-ATAA-T--AAAAATAATATAATAATAATAT
1 A-ATAATAAATATAATTAAAAAAATAATA-AATAATAA-AT
* *
2816 AAAAAT-AATATTAATAAAAAATAATAAATAAATAAATAAATT
1 AATAATAAATA-TAATTAAAAA-AAT-AATAAAT-AATAAA-T
* * * *
2858 ATTAA-AAATAAAAATAATAAAA-AATAAATTAATATAAT
1 AATAATAAATATAATTAAAAAAATAATAAA-TAATA-AAT
* * * * *
2896 AA-AAT-ATTATTATAAAAAAAAAAATAAAATTATATAAT
1 AATAATAAATATAATTAAAAAAATAAT-AAATAATA-AAT
* * * * **
2934 AAAAATAAGTAATAAATAAATAAAA-ATTAAAATCTTAAA-
1 AATAATAAAT-ATAATTAAA-AAAATAAT-AAATAATAAAT
* * * *
2973 AATAAATAATATTATATTTATAAAAAT-ATAATTAATAATT
1 AAT-AATAA-A-TATAATTAAAAAAATAATAAATAATAAAT
* *
3013 ATATAATAAAAATAAATTAAAATAAATTAATATTATTAATTTAAA-
1 A-ATAATAAATAT-AATTAAAA-AAA-TAATA--AATAA--TAAAT
* *
3058 AATATATATAATAATATATTAAATTATATAA-AAA-AATAAAAT
1 AATA-ATA-AAT-ATA-ATTAAA-AAAATAATAAATAAT-AAAT
* * * * * * *
3100 AAAAATATATAAAAAATAAAAATATATAATTCAA-AATTATT
1 AATAATAAAT-ATAATTAAAAA-A-ATAA-TAAATAATAAAT
* *
3141 AA-AATAAATATAATATAATATAATAATAAATAATATAATT
1 AATAATAAATATAAT-TAAAAAAATAATAAATAATA-AA-T
* *
3181 AA-AATTAAGA-ATAA--AAATTAAAATAA-AAAAAATATATT
1 AATAA-TAA-ATATAATTAAA--AAAATAATAAATAATA-AAT
* * *
3219 ATATAATAATTTTAATTAAAATATAAT-ATATAATTATAAA-
1 A-ATAATAAATATAATTAAAA-A-AATAATA-AATAATAAAT
* * *
3259 AATAA-AAATTAATAATT-AATAAATATTAAA-AAAAAAT
1 AATAATAAA-T-ATAATTAAAAAAATAATAAATAATAAAT
* * *
3296 AAT-AT-ATTAT-ATT-AAAAATTAA-AAA-AAAAAATT
1 AATAATAAATATAATTAAAAAAATAATAAATAATAAA-T
*
3329 AA-AATTAAA-ATAA--AAAAAAA-AAAAATATAATAAAT
1 AATAA-TAAATATAATTAAAAAAATAATAA-ATAATAAAT
* * * *
3364 ATAAAATTAAATATAATTTAAAAAATAAT-TAT-ATATAT
1 A-ATAA-TAAATATAATTAAAAAAATAATAAATAATAAAT
* **
3402 CAA-AATAATTATAAATT-TTAAAA-AAT-AA-AATAAAT
1 -AATAATAAATAT-AATTAAAAAAATAATAAATAATAAAT
* * *
3437 AA-AATTAATATTAA-TAAAAAAA-AATAAAATATTAATT
1 AATAATAAATA-TAATTAAAAAAATAAT-AAATAATAAAT
* *
3474 AAT-ATAATATAAAATTATTAAAAAATAA-AATTATATAAAAT
1 AATAATAA-ATATAATTA--AAAAAATAATAAATA-AT-AAAT
* * *
3515 AATCATTATATATATAAATATATTATAAATAATAAA-AATAATAT
1 AAT-A--ATAAATAT-AAT-TA-AAAAAATAATAAATAATAA-AT
* * *
3559 AATAAATAAAATATATATTATAAAAAAAATAAAATAAAAAAT
1 AAT-AAT-AAATATA-ATTAAAAAAATAAT-AAATAATAAAT
* ***
3601 AA-AATAATATATAATTTATAATTTTAATAAA-AA-AAAT
1 AATAATAA-ATATAA-TTAAAAAAATAATAAATAATAAAT
* * * * **
3638 AAT-ATATATTTAAATAAATAATATCAAATAAATTTTAAAT
1 AATAATAAATATAATTAAA-AAAAT--AATAAATAATAAAT
*
3678 -ATAAATAAATATAA-TAATAATAAATATATAAAT--TTAAT
1 AAT-AATAAATATAATTAA-AA-AAATA-ATAAATAATAAAT
* * ** * * *
3716 TAT-ATAAA-ATAATATTATTATATAAAAAATAA-ATAT
1 AATAATAAATATAAT-TAAAAAAATAATAAATAATAAAT
* *
3752 AAT-ATAAATAT-ATTAAAATATATATAAT-AATAAAAAAA
1 AATAATAAATATAATTAAAA-A-A-ATAATAAATAATAAAT
* * ** *
3790 AAAAAAAAATA-AATTACTAAATTATATATAAA-AATAAAC
1 AATAATAAATATAATTA--AAAAAATA-ATAAATAATAAAT
* * * *
3829 AAGTAATAATTATAAATAAAAATATAA-AAA-AATTATAT
1 AA-TAATAAATATAATTAAAAAAATAATAAATAA-TAAAT
* * * *
3867 AAATAAAAAATATAA-AAAAATAAATAATAATGTAATAATT
1 -AATAATAAATATAATTAAAA-AAATAATAA-ATAATAAAT
* * * * *
3907 AGT--TATATA-AAATATAAAAATAAT--AT-TTAAA-
1 AATAATAAATATAATTAAAAAAATAATAAATAATAAAT
* *
3938 AATAATAAAT-TAAATAATAAAAATAA-ATATAATAAAT
1 AATAATAAATATAATTAA-AAAAATAATAAATAATAAAT
* * *
3975 AAATTAAAAAATTTAATATAAAATAAA-AATAAATAA-AATT
1 -AA-TAATAAATATAAT-TAAAA-AAATAATAAATAATAAAT
* * *
4015 AA-ATATAAATA-AA-T-ATAAAATATTAATATAATTAAT
1 AATA-ATAAATATAATTAAAAAAATAATAA-ATAATAAAT
* * * * *
4051 TATAATAAAATATTAATTTAATATATAA-AATTAATTTAATATT
1 AATAAT-AAATA-TAATTAAAAAAATAATAAATAA--TAA-A-T
* *
4094 ATTTAA-AAATATAAAATAAAAAAAT-AT-AA-AATAAAT
1 A-ATAATAAATAT-AATTAAAAAAATAATAAATAATAAAT
** *
4130 ATATTTTAAAATATAA--AATAAAATATATATAAT-ATAAA-
1 A-ATAAT-AAATATAATTAAAAAAATA-ATA-AATAATAAAT
* * ** * *
4168 AA-AATAAAAAT-TTTAAAAATTTAATATATAGAATATTAT
1 AATAATAAATATAATTAAAAAAATAATA-A-ATAATA-AAT
*
4207 AA-AA-AAATATAA--AAAATAAATAA-AAATATAAAAAT
1 AATAATAAATATAATTAAAA-AAATAATAAATA-ATAAAT
*
4242 ATATATTAAA-AT-ATTAAATAAATATATATAAATAA-AAAT
1 A-ATAATAAATATAATTAAA-AAA-ATA-ATAAATAATAAAT
* * *
4281 AATAAATAATAATATAATTATAAATATAATAAATAA-ATAT
1 AAT-AAT-A-AATATAATTAAAAAAATAATAAATAATAAAT
** * * *
4321 -ATAATAAATTATAAACAAAAAATTTATATATAA-AAAT
1 AATAATAAA-TATAATTAAAAAAATAATAAATAATAAAT
* *
4358 AAT-ATAAATAAATATATATAAAAAAA-AATTAAAAAATAATT
1 AATAATAAAT--ATA-AT-TAAAAAAATAA-TAAATAATAAAT
* *
4399 ATATAA-AAATATAA-AAAAATAATATAATAAATAA-AATT
1 A-ATAATAAATATAATTAAAA-AA-ATAATAAATAATAAAT
** * ** *
4437 AA-AATCTTATAAAAAAAAAAAAATAATAATATATTAATAT
1 AATAAT-AAATATAATTAAAAAAATAATAA-ATAATAA-AT
*
4477 AATAAT-AATA-AATTAAATATAATAA-AAA-AATAATAT
1 AATAATAAATATAATTAAA-AAAATAATAAATAATAA-AT
* * * * *
4513 AATAA-AAATATTAA-T-ATAAAATTAT-ATTATTAATT
1 AATAATAAATA-TAATTAAAAAAATAATAAATAATAAAT
* * *
4548 AAT-ATAATTA-AATTATATAAA-AA-AAATAATTAAA-
1 AATAATAAATATAATTAAAAAAATAATAAATAA-TAAAT
* *
4582 AAT-ATAAATATAATAAAAAAAAATATTAAA-AATATTATAT
1 AATAATAAATATAAT-TAAAAAAATAATAAATAATA--A-AT
* * ** * *
4622 ATTAATATTATTATAATATAAATTAATTATAAATAAATATAT
1 AATAATA--AATATAAT-TAAAAAAATAATAAAT-AATAAAT
* * *
4664 AATATTAAAAAT-ATATAAATTAAATAATATAAT-ATAAA-
1 AATAATAAATATAAT-TAAA-AAAATAATA-AATAATAAAT
* *
4702 AATACATAAATAAAAAATTAAAAGAAA-AATAAAATTATTATAATAA
1 AATA-ATAAAT--ATAATTAAAA-AAATAAT-AAA-TA--ATAA-AT
* * * *
4748 AAAAATATTAATAATATTTAAAAAAATAATATAAAAAATTTAAT
1 AATAATA--AAT-ATAATTAAAAAAAT-A-ATAAATAA-TAAAT
* *
4792 AAATAA-AAATATATATTAAATTAAAAAAATTAAATATATATAT
1 -AATAATAAATATA-ATTAAA--AAAATAA-TAAATA-ATAAAT
4835 AATAATTAAA-ATAA-T-AAAAAATAA-AAATTAATAAA-
1 AATAA-TAAATATAATTAAAAAAATAATAAA-TAATAAAT
*
4870 AGATAAT-AATA-AATTAAAAAAATTATATAATAATATAA-
1 A-ATAATAAATATAATTAAAAAAATAATA-AATAATA-AAT
*
4908 ATATAA-AAATATATTATATAATAATAATAATTAAATTATATAAAT
1 A-ATAATAAATATA--AT-TAA-AAAAATAA-TAAA-TA-ATAAAT
* * * * *
4953 AAATATTATATATAATATAATAAAAT-ATATAT-AT-TAT
1 -AATAATAAATATAAT-TAAAAAAATAATAAATAATAAAT
* *
4990 AA-AATATAA-AT-ATTAAATATAATTAATAACATATATATAT
1 AATAATA-AATATAATTAAA-A-AAATAATAA-ATA-ATAAAT
* * * ** *
5030 TATTATAAATA-AA-TAAATATTTAATAAATAATATTAT
1 AATAATAAATATAATTAAAAAAATAATAAATAATA-AAT
* * *
5067 AA-AATAAATA-AATATATATAAATAATAAATATAAAAAT
1 AATAATAAATATAAT-TAAAAAAATAATAAATA-ATAAAT
* * * **
5105 AATAATAAA-A-AAATATAATAATAATAAATAA-AGTT
1 AATAATAAATATAATTAAAAAAATAATAAATAATAAAT
* * *
5140 AA-AA-AATTATAAAT-AAAAAATAAATATATAATAAAT
1 AATAATAAATATAATTAAAAAAAT-AATAAATAATAAAT
*
5176 AA-AATAAATAT-A-TAAAAAATCATAATAAAAAATAAAT
1 AATAATAAATATAATTAAAAAA--ATAATAAATAATAAAT
*
5213 AAT--T-AATAT-ATAAAAAAAATAATAAAATAA-AAAT
1 AATAATAAATATAATTAAAAAAATAAT-AAATAATAAAT
* *
5247 AA-AA-AAA-AAAATTAAAATAAAATAATAATTAATTAAAT
1 AATAATAAATATAATT-AAA-AAAATAATAAATAA-TAAAT
*
5285 -AT--TAAA-AT-A-TAAAATATATAAATAAATAA-AAAT
1 AATAATAAATATAATTAAAA-AAAT-AATAAATAATAAAT
* * *
5318 AATTATTTAATTATAA-TATAAAAAAT-ATAAA-AATATAT
1 AA-TA-ATAAATATAATTA-AAAAAATAATAAATAATAAAT
** * *
5356 -AT-AT-TTTATTA-TAAAAATAA-AATAAAT-ATATAT
1 AATAATAAATATAATTAAAAA-AATAATAAATAATAAAT
* ** *
5389 AAAAATAAATATAATATATTAAAATAAAATAATAATAAA-
1 AATAATAAATATAAT-TAAAAAAATAATA-AATAATAAAT
*
5428 AATATTATAAA-ATAATT--AATAAT-ATAAATAATAAAT
1 AATA--ATAAATATAATTAAAAAAATAATAAATAATAAAT
* * * **
5464 -ATCTATAAA-ATAAAATAAAAAATTAA-AAATAATTTAT
1 AAT-AATAAATAT-AATTAAAAAAATAATAAATAATAAAT
* * * *
5501 AA-AAAAAATA-AAATAATAAATTAATATAATAATAAAT
1 AATAATAAATATAATTAAAAAAATAATA-AATAATAAAT
* * * * *
5538 -TTAACATA-ATAA-TAAAAAATTATATATAAATTACAAAT
1 AATAATAAATATAATTAAAAAA--ATA-ATAAATAATAAAT
* * * *
5576 AAAATATAAATATAATAAAAATAAATAATATAAAAAT-ATT
1 AATA-ATAAATATAATTAAAA-AAATAATA-AATAATAAAT
* * * ** * *
5616 AAAAAAAAATTTAATTATAAATTATATTAAATAATAATTT
1 AATAATAAATATAATTA-AAAAAATAATAAATAATAA-AT
* * * * *
5656 AGA-AATAATATTATATATTATATATATAAAAAATAATTAA-
1 A-ATAATAA-A-TATA-ATTAAAAAAATAATAAATAATAAAT
*
5696 AATAAATAAATATAATTTAATATTAAAAT-ATAAATTAT-AAT
1 AAT-AATAAATATAA-TTAA-A--AAAATAATAAATAATAAAT
* *
5737 AAATATATAAATA-AA-TAGAATAAAATTAT-TATAATAAA-
1 -AATA-ATAAATATAATTA-AA-AAAATAATAAATAATAAAT
*
5775 AATAAATAAATAAAATTATAATAAAAT-A-AAATAAATAAAT
1 AAT-AATAAATATAATTA-AA-AAAATAATAAAT-AATAAAT
* *
5815 AAT-ATAAATA-AA-TAATAAAA-AATAAATTATAAA-
1 AATAATAAATATAATTAAAAAAATAATAAATAATAAAT
* * * * * *
5848 AAAAATATAA-A-AAATAAATATAATATTATATAAAAAAT
1 AATAATA-AATATAATTAAA-AAAATAATAAATAATAAAT
* *
5886 AATTAAATTAAA-AAAATT-AAAATATAA-AAATATATAAAT
1 AA-T-AA-TAAATATAATTAAAAAAATAATAAATA-ATAAAT
* * * * **
5925 AATATTATATTTAA-T-AATAAAT-ATTTATAATAAAT
1 AATAATAAATATAATTAAAAAAATAATAAATAATAAAT
*
5960 AATAA-AAATA-AAGTTAATTATAAAAT--TAAAT-ATAATTT
1 AATAATAAATATAA-TTAA--A-AAAATAATAAATAATAA-AT
* *
5998 AATAA-AAATATAATTAATTTTAAATATATTAATATTATTAAAAAAT
1 AATAATAAATATAATTAA----AAA-A-A-TAATA--AATAATAAAT
* *
6044 AATAATAAAAAT-ATTAAAATTAAT-ATAATATAATTAAAAT
1 AATAATAAATATAATTAAAA-AAATAATAA-ATAA-T-AAAT
* *
6084 AATAATAAA-AT-ATGT---AAAATATTAAAAAATAAAT
1 AATAATAAATATAAT-TAAAAAAATAATAAATAATAAAT
6118 AATAAATTTAAATATAA--AAAAAAATAA-AAATATTATAAAT
1 AAT-AA--TAAATATAATTAAAAAAATAATAAATA--ATAAAT
* * *
6158 AAT-ATATATATAAATT-TAATAATAAATAAATAATTAAATT
1 AATAATAAATAT-AATTAAAAAAAT-AATAAATAA-TAAA-T
6198 AA-ATATAAA-ATTAATT-AAAAAAT-ATAAA-AA-AAAT
1 AATA-ATAAATA-TAATTAAAAAAATAATAAATAATAAAT
* * *
6232 AATAAT--ATA-ATTTAAATAAATATTATAATAATAATTAT
1 AATAATAAATATAATTAAAAAAATAATA-AATAATAA--AT
* *
6270 AA-AATTAAATAAAAATTAATAATTATATTTATATATAA-AATAAAAT
1 AATAA-TAAAT-ATAATTAA-AA--A-A-ATA-ATA-AATAAT-AAAT
* * *
6316 AATAAT-AATTTAATT-AATAAATCAAT--ATATTAAAT
1 AATAATAAATATAATTAAAAAAAT-AATAAATAATAAAT
* *** * *
6351 AAAAATTTTTCAT-ATTAAATAATTAAT--ATACATAAAT
1 AATAATAAAT-ATAATTAAAAAAATAATAAATA-ATAAAT
* * * *
6388 -ATCATTAATA-ATATTATATAAAATAAT--ATTA-AAAT
1 AATAATAAATATA-ATTA-AAAAAATAATAAATAATAAAT
* *
6423 -ATAATATATTTAA--AAAATAAATAATTAAATAATAAA-
1 AATAATAAATATAATTAAAA-AAATAA-TAAATAATAAAT
*
6459 ATATAAAAAATATAA-TAAATTATAAAT-ATAAA-AATAAAT
1 A-ATAATAAATATAATTAAA--A-AAATAATAAATAATAAAT
** *
6498 -AT-A-AAATATAATTAATTAAA-AATAAATAA-ATAT
1 AATAATAAATATAATTAAAAAAATAATAAATAATAAAT
* * * *
6531 AATAATTAA-AT-ATT--AAAATTAATAATTAATTAAT
1 AATAATAAATATAATTAAAAAAATAATAAATAATAAAT
* * * *
6565 -AT-ATAATTA-AATTTAAATTAAATAATATAAT-TTTAAT
1 AATAATAAATATAA-TTAAA-AAAATAATA-AATAATAAAT
* * *
6602 AA-AATAATTATAATTAAAAAAATAATAGAAT-TTAATT
1 AATAATAAATATAATTAAAAAAATAATA-AATAATAAAT
*
6639 ATTAA-AAA-ATAA-TACAAATAATATATATAAAT-A-AAAT
1 AATAATAAATATAATTA-AAA-AA-ATA-ATAAATAATAAAT
* * * * * *
6676 -ATATTATATATTATATAAAAATATATATAAAAAAAAAAAAGT
1 AATAATAAATATAAT-TAAAAA-A-ATA-ATAAATAATAAA-T
6718 AATAAATAAATTATTAATT-AAAAAATAAT-AATAGATAAAAT
1 AAT-AATAAA-TA-TAATTAAAAAAATAATAAATA-AT-AAAT
* * *
6759 AA-AA-AAATTATAAATATAAAAAGAAT-AATAATATAAT
1 AATAATAAA-TATAATTAAAAAAATAATAAATAATA-AAT
* *
6796 ATTAATATA-ATAATATAAAATAAAT-ATAAATAA-AAAT
1 AATAATAAATATAAT-TAAAA-AAATAATAAATAATAAAT
* * * *
6833 -ATATTATTATATAA-T-AAATAAT-ATAAATATATATAT
1 AATAATA-AATATAATTAAAAAAATAATAAATA-ATAAAT
*
6869 AA-AA-AATATATATATT-AAATAATAATAAAT-A-AAAT
1 AATAATAA-ATATA-ATTAAAAAAATAATAAATAATAAAT
* * *
6904 AAT--TAATTATAA-TAAAAAATAAAATATATATATAAAT
1 AATAATAAATATAATTAAAAAA-ATAATAAATA-ATAAAT
6941 -ATAAT--ATA-AATTAAAAAAA-ATATAATATAATAAA-
1 AATAATAAATATAATTAAAAAAATA-ATAA-ATAATAAAT
* * *
6975 AATTAAAAAATAATAATATAATAAAAATAATTATATTATTAAA-
1 AA-TAATAAAT-ATAAT-TAA-AAAAATAA-TA-AATAATAAAT
* *
7018 AATAAATAAATA-AATAAAAAAAATTAT-AAT-ATAAAT
1 AAT-AATAAATATAATTAAAAAAATAATAAATAATAAAT
** * *
7054 --TAATATTTAT-ATT-ATAAAATGAATATATAATAAAT
1 AATAATAAATATAATTAAAAAAAT-AATAAATAATAAAT
* * *
7089 -ATAATAAA-ATATATTATAAATATATAAAAAATATTTAAATT
1 AATAATAAATATA-ATTA-AAA-AAATAATAAATA-ATAAA-T
** * *
7130 TTTAAAAAATATAAATAATAATAATAATAATAATATATATAAATT
1 AATAATAAATAT-AAT--TAA-AAAAATAATAA-ATA-ATAAA-T
7175 AGATAATATAA-AT-ATATAATAAAAATTAATAAATAA-AAAT
1 A-ATAATA-AATATAAT-TAA-AAAAA-TAATAAATAATAAAT
*
7215 ATATAA-ATAATATAATATTAAAAAAA-AAT--TTAAT-AAT
1 A-ATAATA-AATAT-A-ATTAAAAAAATAATAAATAATAAAT
* *
7252 -AT-ATAAA-ATAATTTATAAAAATTAT-AA-AA-AAAT
1 AATAATAAATATAA-TTAAAAAAATAATAAATAATAAAT
* * *
7285 AAT--TAATATAAAATTAAAAAATTAAATTAAATTAT-AAT
1 AATAATAA-ATATAATTAAAAAAAT-AA-TAAATAATAAAT
* *
7323 -ATAGTAACTATAAATTAAAAAAAATAATATAAATATATAAA-
1 AATAATAAATAT-AATT-AAAAAAAT-A-ATAAATA-ATAAAT
* * *
7364 AAAATATAATATTATAATTATAAAAATTAGTAAAT-AT-AAT
1 AATA-ATAA-A-TATAATTA-AAAAAATAATAAATAATAAAT
* * * **
7404 -ATAATATTATATAA--AAAATAAA-AAAAAATATTATTT
1 AATAATA-AATATAATTAAAA-AAATAATAAATAATAAAT
* * * *
7440 AATAATAAATATTAAAT-ATAAATTAATTAAT-ATAAAT
1 AATAATAAATA-TAATTAAAAAAATAATAAATAATAAAT
*
7477 AATAAT-AA-A-AATTAAAAAAATAATAATTATAAAAAAT
1 AATAATAAATATAATTAAAAAAATAATAA--ATAATAAAT
*
7514 TATAATATAATATAATATAAATAATTTATATAATAAATAAT-AA-
1 AATAATA-AATATAAT-TAAA-AA---A-ATAATAAATAATAAAT
** * * *
7557 AATAAATATTTATATTTAAATAAATAAATTAAAATAATTTTAA-
1 AAT-AATAAATATAATTAAAAAAAT-AA-T-AAATAA--TAAAT
* * *
7600 AATATTATATATAATTTAAAAAAT-ATAAA-AATAAAT
1 AATAATAAATATAATTAAAAAAATAATAAATAATAAAT
* * *
7636 -AT-TTAAATAATAA--AAATAATAATAATATATAAAAAAT
1 AATAATAAAT-ATAATTAAA-AA-AATAATAAATAATAAAT
* * *
7673 TATAATAAATAAATATTAAAATAAAAATTATATAATAATAAAAT
1 AATAATAAATATA-ATT--AA-AAAAATAATA-AATAAT-AAAT
* * * * *
7717 ATTTAATAAATATTATTAATAAATTAATTAAA-AATATAT
1 A-ATAATAAATATAATTAAAAAAATAA-TAAATAATAAAT
* * * * *
7756 ATATAATTAATAATAAAT-AAATATTATATATATAATAAAT
1 A-ATAATAAAT-ATAATTAAAAAAATA-ATAAATAATAAAT
*
7796 -A-AAT-AATATAATTAAAAAAA-AATTTAATAATAAAT
1 AATAATAAATATAATTAAAAAAATAA-TAAATAATAAAT
7831 AA-AATTAAAT-TAATTATATTATATAAAT-ATAAATTTAAT-AAT
1 AATAA-TAAATATAATTA-A--A-A-AAATAATAAA--TAATAAAT
*
7873 AATAA-ATAATAATAATTTAAATAAAA-AA-AATTAATAAA-
1 AATAATA-AAT-ATAA-TTAAA-AAAATAATAAATAATAAAT
* * **
7911 AATAAAAAATATAAAATT-AAAAAAT--TAAATTATATGT
1 AATAATAAATAT--AATTAAAAAAATAATAAATAATAAAT
*
7948 -AT-A-AAATATAAATTAAATATAATATATTTAAAT-AT-AAT
1 AATAATAAATAT-AATTAAA-A-AA-ATA-ATAAATAATAAAT
*
7986 AATAATAAATTATATATTAAAATAAT-A-AAATAAT-AAT
1 AATAATAAA-TATA-ATTAAAAAAATAATAAATAATAAAT
* * * *
8023 AATAAATTAATA-AATTATATAAAT-A-AAATTATAAA-
1 AAT-AATAAATATAATTAAAAAAATAATAAATAATAAAT
* ** * * * *
8058 AATTATTTATATAAAATATAAATATAATATATAA-AAAT
1 AATAATAAATAT-AATTAAAAAAATAATAAATAATAAAT
* * * * ** *
8096 ATAAAATAAATATAA-TATAATAATATTATTTAATATAT
1 A-ATAATAAATATAATTAAAAAAATAATAAATAATAAAT
** ** *
8134 -ATAATAAAT-TAATTATTAATTTAATAAATAATTAAT
1 AATAATAAATATAATTAAAAAAATAATAAATAATAAAT
* * * * *
8170 -AT-ATTATTAT-ATTATATAAAAAAAAT-AATATTATAT
1 AATAATAAATATAATTA-A-AAAAATAATAAATAATAAAT
* * *
8206 AA-AAT-TATATAATTAATATAATAAATAATATAATATAAT
1 AATAATAAATATAATTAAAAAAAT-AATAA-ATAATA-AAT
* * * *
8245 AA-AATAAA-ATAATATAGTAATATTAATAAAT-ATATTAT
1 AATAATAAATATAAT-TA-AAAAAATAATAAATAATA-AAT
* *
8283 AA-AA-AAATAT--TTAATATAA-AA-AAAT-ATAAA-
1 AATAATAAATATAATTAAAAAAATAATAAATAATAAAT
* *
8313 AATTAT-AA-ATAATTAAAATATAA-AATAATATAATAATT
1 AATAATAAATATAATTAAAA-A-AATAATAA-ATAATAAAT
* *
8351 AAAAATAAA-A-AATTAAAAAAAT-ATAAA-AAAAAAT
1 AATAATAAATATAATTAAAAAAATAATAAATAATAAAT
* * * *
8385 TATAAATAAAATAAAAATAATAAAAA-AATTAAAAAATAAAT
1 AAT-AAT-AAATATAATTAA-AAAAATAA-TAAATAATAAAT
*
8426 --TAAT-AATATTAA-AAATAAAAAT-ATAAATATATAAAT
1 AATAATAAATA-TAATTAA-AAAAATAATAAATA-ATAAAT
* * *
8462 AA-AAT-ATTAT-ATTAAAAAAATTTAATTTTATAATATTATAT
1 AATAATAAATATAATTAAAAAAA--TAA---TA-AATAATAAAT
* * * *
8503 AA-AATATATTATAAATT-AATAAATAATAAAATAATTATT
1 AATAATA-AATAT-AATTAAAAAAATAAT-AAATAATAAAT
*
8542 TATAATAATATATAA-T-AAAAAAT-ATAAATAAATAAA-
1 AATAATAA-ATATAATTAAAAAAATAATAAAT-AATAAAT
* * *
8578 ATTAAATAAATATAA--AATATAATAATAAA-ACA-AAAT
1 AAT-AATAAATATAATTAAAAAAATAATAAATA-ATAAAT
* *
8614 ATATAATATAATAATGATTAAAAATAT-AT-AA-AAT-AA-
1 A-ATAATA-AAT-ATAATTAAAAAAATAATAAATAATAAAT
*
8650 AAT-ATAAAAATAA-TAAAAAAATAATATAAT-ATAAAT
1 AATAATAAATATAATTAAAAAAATAATA-AATAATAAAT
8686 AA
1 AA
8688 ATAGCAATTT
Statistics
Matches: 5019, Mismatches: 883, Indels: 1902
0.64 0.11 0.24
Matches are distributed among these distances:
30 4 0.00
31 19 0.00
32 88 0.02
33 171 0.03
34 340 0.07
35 448 0.09
36 544 0.11
37 612 0.12
38 627 0.12
39 532 0.11
40 474 0.09
41 320 0.06
42 277 0.06
43 173 0.03
44 148 0.03
45 121 0.02
46 71 0.01
47 41 0.01
48 9 0.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.34
Consensus pattern (38 bp):
AATAATAAATATAATTAAAAAAATAATAAATAATAAAT
Found at i:1881 original size:53 final size:52
Alignment explanation
Indices: 1801--8687 Score: 420
Period size: 51 Copynumber: 133.4 Consensus size: 52
1791 ATTTATAAAT
* *
1801 AAAAATAAAATATAAAAATTATAAAT-AAT-TAAAT-TAATTAATAATATAATTAA
1 AAAAATAATATATAAAAATAATAAATAAATATAAATAT-A-TAATAA-ATAATT-A
*
1854 AAAAATAATATATAATAAATAAT-AATAAATATAAATATATAATTAATAATTA
1 AAAAATAATATATAA-AAATAATAAATAAATATAAATATATAATAAATAATTA
* * *
1906 AAAAATAATA-A-AAATTAAAAATAAATTAAA-A-AAATAAATAAAAATATAATTA
1 AAAAATAATATATAAA--AATAATAAA-TAAATATAAATATATAATAA-ATAATTA
* * * * * *
1958 CTAAATAAAAATGAT-TATTAAA-AAAAAATTAAA-ATAATTAT-TAATTATTAATT-
1 --AAA-AATAAT-ATATA-AAAATAATAAA-TAAATATAAATATATAATAAATAATTA
* * * * * * * * * *
2011 TAAATTATTAAATAAATAAAAATAGAATTAATATAAAAAAATTA-AAATTATATA
1 AAAAATAATATATAAA-AATAATA-AATAAATATAAATATATAATAAATAAT-TA
* * *
2065 AAAAAAAATTATATAAAAATAATAAATAATTTCATATAAATA-AAAATAAGT-ATATA
1 AAAAATAA-TATATAAAAATAATAAATAA----ATATAAATATATAATAAATAAT-TA
* * * * * * *
2121 AAAAATAAAAAATAAATAT-ATAAA-AAAAATAAAAATA-AATAAAAAAATA
1 AAAAATAATATATAAAAATAATAAATAAATATAAATATATAATAAATAATTA
* * * *
2170 ATAATTAAT-T-TAAATATAAAATTAAATATATATAAA-ATTATAAATAAA-AA-TA
1 AAAAATAATATATAAA-A-ATAA-TAAATAAATATAAATA-TAT-AATAAATAATTA
* * * * * * *
2222 TAAAATAATTTTATAAATTAAATTATAAAAAAATAATAAA-AAAAAATAAAAAATTA
1 AAAAATAA-TATAT-AA--AAATAATAAATAAAT-ATAAATATATAATAAATAATTA
* * * *
2278 ATGAAAT-AT-TAT-TAAATAAT-AAT--ATAT-AATATATAATAATTAAATA
1 A-AAAATAATATATAAAAATAATAAATAAATATAAATATATAATAAATAATTA
* * *
2324 TAAAAGTTATA-ATAAATTATTAATATAATAAA-ATAAATATATAAATTAAAATAATATAA
1 -AAAAATAATATATAAA--AATAATA-AATAAATATAAATATAT-AA-T-AAATAAT-T-A
*
2383 AAAAATAATA-ATTAAATAAATAATTAATAAAT-TAAATATA-AA-AAATAATATA
1 AAAAATAATATA-T-AA-AAATAATAAATAAATATAAATATATAATAAATAAT-TA
* *
2435 AATAAATAAATAATATAAATAATATATATAATTAAAAATAATAATAAATAAT-AAT-ATTA
1 AA-AAAT-AAT-ATATAAA-AATA-ATA-AA-TAAATAT-A-AATATATAATAAATAATTA
* * * * *
2494 TAAATATTATATTATATATAAATATTAAAAAAATA-AAATATTATATTAAATTAA-TA
1 -AAA-A--ATAATATATAAAAATAATAAATAAATATAAATA-TATAATAAA-TAATTA
* * *
2550 AAAAA-AAAAT-TAAAATTAAT--ATAAAT-TAAA-A-ATAATAATTAA--A
1 AAAAATAATATATAAAAATAATAAATAAATATAAATATATAATAAATAATTA
* * * * *
2593 AATTATTAATATAATAAAAA-AA-AATTAAATATTAATA-ATAATTAAT-A-TA
1 AA-AAATAATAT-ATAAAAATAATAAATAAATATAAATATATAATAAATAATTA
* * * * * *
2642 AAATATATATTATATATAAATAATAAATAAATATCATTAT-TTATTAATAA-TA
1 AAA-A-ATAATATATAAAAATAATAAATAAATATAAATATATAATAAATAATTA
* *
2694 AATATATAATATAATTAAATAA-ATTAAAT-AAT-TAAATA-A-AATAAA-AATATA
1 AA-AAATAATAT-A-TAAA-AATAATAAATAAATATAAATATATAATAAATAAT-TA
* * *
2745 ATAAATAA-ATAAAAAACATTAAT-AATATA-ATAAA-ATATAATAAAATAA-T-
1 AAAAATAATATATAAAA-A-TAATAAATAAATATAAATATATAAT-AAATAATTA
* *
2794 AAAAATAATATAATAATAATATAA-AAATAATATTAATAAA-AAATAATAAATAAATA
1 AAAAATAATAT-ATAA-AA-ATAATAAATAA-A-T-ATAAATATATAATAAATAATTA
* * *
2850 AATAAATTATTAAAAATAAAAATAATAAA-AAATA-AATTAATATAATAAAATATTATTA
1 AA-AAA-TA--ATATATAAAAATAATAAATAAATATAAAT-ATATAAT-AAATA--ATTA
* * * * *
2908 TAAAAA-AAAAAAT-AAAAT--TATAT-AATAAAAATA-AGTAATAAATAAATA
1 -AAAAATAATATATAAAAATAATAAATAAATATAAATATA-TAATAAATAATTA
* * * * * * *
2956 AAAATTAAAATCT-TAAA-AATAAAT-AATATTATATTTATAAAAATATAATT-
1 AAAAATAATATATAAAAATAATAAATAAATA-TAAATATATAATAA-ATAATTA
* *
3006 AATAATTATATAATAAAAATAAATTAAAATAAAT-T-AATATTATTAATTTAAA-AATATA
1 AAAAATAATAT-ATAAAAAT-AA-T-AAATAAATATAAATA-TA-TAA--TAAATAAT-TA
* * * * * * *
3064 TATAATAATATATTAAATTATATAAAAAAATA-AAATA-AAAATATATAA--A
1 AAAAATAATATATAAAAATA-ATAAATAAATATAAATATATAATAAATAATTA
* * * *
3113 AAATAAAAATATATAATTCAA-AATTATTAAA-ATAAATATA-ATATAATATAA-TA
1 AAA-AATAATATATAA--AAATAATAAATAAATATAAATATATA-ATAA-ATAATTA
* * * * * *
3166 ATAAATAATATAATTAAAATTAA-GAATAAAAATTAAA-ATAAAAAAAATATATTA
1 AAAAATAATAT-A-TAAAAATAATAAATAAATA-TAAATATATAATAAATA-ATTA
* * * * * * * *
3220 TATAATAATTTTAATTAAAATATAATATATAATTATAAAAATAAAAATTAATAATTA
1 AAAAATAA-TAT-A-TAAAA-ATAATAAATAAATATAAATAT-ATAATAAATAATTA
* * * * * * * * * *
3277 ATAAATATTAAAAAAAAATAATATAT-TATATTAAAAATTAAAAAAAAAAATT-
1 AAAAATAATATATAAAAATAATAAATAAATA-TAAATA-TATAATAAATAATTA
* * * * * * *
3329 AAAATTAAAATAAAAAAAAAAAAAATATA-ATAAATATAAAATTAAATATAATTTA
1 AAAAATAATATATAAAAATAATAAATAAATATAAATATATAA-T-AA-ATAA-TTA
* * * * * *
3384 AAAAATAAT-TATATATATCA-AAATAATTATAAAT-TTTAAAAAATAA--A
1 AAAAATAATATATAAAAATAATAAATAAATATAAATATATAATAAATAATTA
* * * * * *
3431 ATAAATAAAAT-TAATATTAATAAAAAAAAATAAA-ATATTAATTAATATAA-TA
1 AAAAATAATATATAAAAATAATAAATAAATATAAATATA-TAA-TAA-ATAATTA
* * * * * *
3483 TAAAATTAT-TA-AAAAATAA-AATTATATA-AAATAATCATTATATATATAAATA
1 AAAAATAATATATAAAAATAATAAATAAATATAAAT-AT-A-TA-ATAAATAATTA
* ** *
3535 TATTATAA-ATAATAAAAATAATATAATAAATA-AAATATAT-AT-TATAA--A
1 AAAAATAATAT-ATAAAAATAATA-AATAAATATAAATATATAATAAATAATTA
* * *
3583 AAAAATAAAATA-AAAAAT-A-AAAT-AATATATAATTTATAATTTTAATAA--A
1 AAAAATAATATATAAAAATAATAAATAAATATA-AATATATAA--TAAATAATTA
*** * **
3632 AAAAATAATATATATTTA-AATAAAT-AATATCAAATAAATTTTAAAT-A-TA
1 AAAAATAATATATAAAAATAATAAATAAATAT-AAATATATAATAAATAATTA
* * * * *
3681 AATAAAT-ATA-ATAATAATAAATATATAAATTTAATTATATAAAATAATATTATTA
1 AA-AAATAATATATAAAAAT-AATAAATAAATATAA--ATATATAATAA-ATAATTA
* * *
3736 TATAAAA-AATAAAT-ATAAT-ATAAATATAT-TAAA-ATAT-ATATAATAA-TA
1 -A-AAAATAATATATAAAAATAATAAATAAATATAAATATATAATA-AATAATTA
* * * * * * *
3784 AAAAA-AA-A-AAAAAAATAAATTACTAAAT-TATATATAAAAATAAACAAGT-
1 AAAAATAATATATAAAAAT-AATAAATAAATATAAATAT-ATAATAAATAATTA
* * * * * * * *
3833 AATAATTATAAATAAAAAT-ATAAAAAAAT-TATATAAATAAAAAAT-ATAA
1 AAAAATAATATATAAAAATAATAAATAAATATAAATATATAATAAATAATTA
** * * *
3882 AAAAATAA-ATA-ATAATGTAATAATTAGTTATATAAA-ATATAA-AAATAATATTT
1 AAAAATAATATATA-AAAATAATAAATA--AATATAAATATATAATAAAT-A-ATTA
* *
3935 AAAAATAATAAAT-TAAATAAT--A-AAA-AT-AA-ATATAATAAATAAATTA
1 AAAAATAATATATAAAAATAATAAATAAATATAAATATATAATAAAT-AATTA
*
3981 AAAAATTTAATATA-AAATAAAAATAAATAAA-ATTAAATATA-AATAAAT-A-TA
1 AAAAA--TAATATATAAA-AATAATAAATAAATA-TAAATATATAATAAATAATTA
* ** * *
4032 AAATATTAATATAATTAATTATAATAAAATATTAAT-TTAATATATAA-AATTAATT-
1 AAA-AATAATAT-A-TAAAAATAAT-AAATA--AATATAAATATATAATAAATAATTA
* * * *
4087 --TAATATTATTTAAAAAT-ATAAAATAAA-A-AAATATAAAATAAATATATTTTA
1 AAAAATAATATATAAAAATAAT-AAATAAATATAAATATATAATAAATA-A--TTA
* * * * *
4138 AAATATAA-A-AT-AAAAT-ATATAT-AATATAAAAAAATAA-AAAT-TTTA
1 AAAAATAATATATAAAAATAATAAATAAATATAAATATATAATAAATAATTA
* * * * *
4183 AAAATTTAATATATAGAATATTATAAAAAAATATAAA-AAATAAATAAA-AA-TA
1 AAAA-ATAATATATA-AAAATAATAAATAAATATAAATATAT-AATAAATAATTA
* * * *
4235 TAAAAAT-ATATATTAAAATATTAAATAAATATATATAAATAA-AAATAA-TA
1 -AAAAATAATATATAAAAATAATAAATAAATATAAATATATAATAAATAATTA
* * * *
4285 AATAATAATATAATTATAAATATAATAAATAAATATATAATAAATTATAAA-CA--A
1 AAAAATAATAT-A-TA-AAA-ATAATAAATAAATATA-AATATATAATAAATAATTA
* * * *
4339 AAAATTTATATATAAAAATAAT--ATAAATA-AATATATATAAAAAAAAATTA
1 AAAAATAATATATAAAAATAATAAATAAATATAA-ATATATAATAAATAATTA
4389 AAAAATAATTATATAAAAAT-ATAAA-AAA-AT--A-ATATAATAAATAAAATTA
1 AAAAATAA-TATATAAAAATAATAAATAAATATAAATATATAATAAAT--AATTA
** * * * * *
4438 AAATCTTATA-AAAAAAAAAAAATAATAATATATTAATATAATAAT-AATAAATT-
1 AAAAATAATATATAAAAATAATA-AATAA-ATATAAATAT-ATAATAAAT-AATTA
* * * *
4491 AAATATAATA-A-AAAAATAATATAATAAAAAT-ATTAATATAA-AATTATATTA
1 AAAAATAATATATAAAAATAATA-AATAAATATAAAT-ATATAATAAATA-ATTA
** * * * * * *
4542 TTAATTAATATAATTAAATTATATAAAAAAAATAATTAAAAATATAA-ATATAA-TA
1 AAAAATAATAT-ATAAAAATA-AT-AAATAAAT-A-TAAATATATAATAAATAATTA
* * * * *
4597 AAAAAAAATAT-TAAAAATATTATATATTAATATTATTATA-ATATAAATTAATTATA
1 AAAAATAATATATAAAAATA--ATAAATAAATATAAATATATA-ATAAA-TAA-T-TA
* * *
4653 AATAAATATATAATATTAAAAATATATAAATTAAATAATATAATATAAAAATACATAAATA
1 AA-AAATA-AT-ATA-TAAAAATA-ATAAA-TAAAT-ATA-AATAT-ATAATAAATAATTA
* * * *
4714 AAAAATTAA-A-AGAAAAATAA-AATTATTATAATAAAAAAATATTAAT-AATATTTAA
1 AAAAA-TAATATATAAAAATAATAA--A-TA-AATATAAATATA-TAATAAATAATT-A
* * *
4769 AAAAATAATATA-AAAAAT--TTAATAAATAAAAATATATATTAAATTAA--A
1 AAAAATAATATATAAAAATAATAAATAAATATAAATATATAATAAA-TAATTA
* * * * *
4817 AAAATTAA-ATATATATATAATAATTAAAATAATAAA-AAATAA-AAATTAA-TA
1 AAAAATAATATATAAAAATAATAAAT-AAAT-ATAAATATATAATAAA-TAATTA
* * *
4868 AAAGATAATA-AT-AAATTAA-AAA-AATTATATAATA-AT-ATAAAT-A-TA
1 AAAAATAATATATAAAAATAATAAATAAATATA-AATATATAATAAATAATTA
* * *
4913 AAAATATATTATATAATAATAATAATTAAAT-T--ATATA-AATAAAT-ATT-
1 AAAA-ATAATATATAAAAATAATAAATAAATATAAATATATAATAAATAATTA
* * * *
4960 ATATATAATATAATAAAATATATATATTATAAAATATAAATAT-TAA-ATATAATTA
1 AAAAATAATAT-ATAAAA-ATA-ATA-AAT-AAATATAAATATATAATAAATAATTA
* ** * *
5015 ATAACAT-ATATAT-ATTATTATAAAT-AA-ATAAATATTTAATAAATAATATTA
1 A-AAAATAATATATAAAAATAATAAATAAATATAAATATATAATAAAT-A-ATTA
* * * *
5066 TAAAATAAATAAATATATATAA-ATAATAAATATAAA-A-ATAAT-AATAA--A
1 AAAAAT-AATATATAAAAATAATA-AATAAATATAAATATATAATAAATAATTA
* *
5114 AAAATATAATA-ATAATAAATAAAGTTAAA-AAATTATAAATAAAAAATAAATATATAATAA
1 AAAA-ATAATATATAA-AAAT-AA--TAAATAAA-TATAAATATATAATAAATA-AT--T-A
* * *
5174 ATAAAATAAATATATAAAAAATCAT-AATAAAAAATAAATA-ATTAATATATAA--A
1 A-AAAAT-AATATAT-AAAAATAATAAAT-AAATATAAATATA-TAATAAATAATTA
* *
5227 AAAAATAATA-A-AATAAA-AATAAA-AAA-AAAAAT-TAAAATAAAATAA-TA
1 AAAAATAATATATAA-AAATAATAAATAAATATAAATATATAAT-AAATAATTA
* * * * *
5274 ATTAATTAA-ATATTAAAAT-ATAAA-ATATATAAATAAATAA-AAATAATTA
1 A-AAAATAATATATAAAAATAATAAATAAATATAAATATATAATAAATAATTA
** * * * *
5323 TTTAATTATAATATA-AAAAAT-ATAAA-AATATATATATTTTATTATAAA-AATAA
1 ---AAAAATAATATATAAAAATAATAAATAA-ATATA-AATATATAATAAATAATTA
* *
5376 AATAAAT-ATATATAAAAATAA-ATATAATATATTAAA-ATAAAAT-AATAA-T-
1 AA-AAATAATATATAAAAATAATAAATAA-ATA-TAAATATATAATAAATAATTA
* *
5425 AAAAATATTATA-AAATAATTAATAATATAAATAATAAATATCT-AT-AA-AA-TA
1 AAAAATAATATATAAA-AA-TAATAA-ATAAAT-ATAAATATATAATAAATAATTA
* ** * *
5476 AAATAA-AAAAT-TAAAAATAATTTATAAA-AAAAATAAAATAATAAATTAA-TA
1 AAA-AATAATATATAAAAATAATAAATAAATATAAAT-ATATAATAAA-TAATTA
* * * *
5527 TAATAATAA-ATTTAACATAATAATAAA-AAAT-TATATATA-AATTACA-AA-TA
1 -AAAAATAATATATAA-A-AATAATAAATAAATATAAATATATAA-TAAATAATTA
* * * *
5577 AAATATAA-ATATAATAAA-AATAAAT-AATATAAAAATATTAAAAAAAAATTTA
1 AAAAATAATATATAA-AAATAATAAATAAATATAAATATA-TAATAAATAA-TTA
* ** * * * *
5629 ATTATAAATTATAT-TAAATAATAATTTAGAAATA-ATATTATATATTATAT-ATATA
1 A--A-AAATAATATATAAA-AATAATAAATAAATATA-AATATATAATAAATAAT-TA
* *
5684 AAAAATAAT-TA-AAATA-AATAAATATAAT-TTAATAT-TAA-AATATAAATTA
1 AAAAATAATATATAAAAATAATAAATA-AATATAAATATATAATAA-AT-AATTA
* * * *
5733 TAATA-AATATATAAATA-AATAGAATAAA-AT-TAT-TATAATAAA-AA-TA
1 AAAAATAATATATAAAAATAATA-AATAAATATAAATATATAATAAATAATTA
* * *
5779 AATAAATAAAATTATAATAA-AATAAAATAAATAAATAATATA-AATAAATAA-TA
1 AA-AAATAATA-TATAAAAATAAT-AAATAAATATA-AATATATAATAAATAATTA
* * *
5832 AAAAATAAATTATAAAAAAAATATAAAAAATAAATATAATATTATATAAAAAATAATTA
1 AAAAAT-AA-TAT--ATAAAA-ATAATAAATAAATATAA-A-TATATAATAAATAATTA
* * **
5891 AATTAAA-AA-A-ATTAAAAT-ATAAA-AATATATAAATAATATTATATTTAA-TA
1 AA--AAATAATATATAAAAATAATAAATAA-ATATAAAT-ATATAATAAATAATTA
* * * *
5941 ATAAAT-ATTTATAATAAATAATAAAAATAAAGT-TAATTATAAAATTAAATATAATTTA
1 AAAAATAATATATAA-AAATAAT--AAATAAA-TATAAATATATAA-T-AA-ATAA-TTA
* ** ** * *
5999 ATAAA-AATATA-ATTAATTTTAAAT--ATATTAATATTATTAAAAAATAA-TA
1 AAAAATAATATATAAAAATAATAAATAAATATAAATA-TA-TAATAAATAATTA
* *
6048 ATAAA-AATAT-TAAAATTAATATAATATAAT-TAAA-ATAATAATAAA-ATATGT-
1 AAAAATAATATATAAAAATAATA-AATA-AATATAAATAT-ATAATAAATA-AT-TA
* *
6099 -AAAAT-AT-TA-AAAAATAA-ATAATAAATTTAAATATA-AA-AAA-AAAT-
1 AAAAATAATATATAAAAATAATA-AATAAATATAAATATATAATAAATAATTA
* *
6143 AAAAAT-AT-TATAAATAATATATATATAAAT-TTAATA-ATAAATAAATAATT-
1 AAAAATAATATATAAA-AATA-ATAAATAAATATAAATATAT-AATAAATAATTA
* * * *
6193 -AAATTAA-ATATAAAATTAATTAAA-AAATATAAAAAAAATAATAATATAATTTA
1 AAAAATAATATATAAAAATAA-TAAATAAATAT-AAATATATAATAA-ATAA-TTA
* * * * *
6246 AATAAATATTATAATAATAATTATAAAATTAAATA-AAA-AT-TAATAATTATATTT
1 AA-AAATAATAT-ATAAAAATAAT-AAA-TAAATATAAATATATAATAAATA-ATTA
* * * * * * * *
6300 ATATATAAAATA-AAATAATAATAATTTAAT-T-AATAAATCAATATATTAAATA
1 AAAAATAATATATAAA-AATAATAAATAAATATAAATATAT-AATA-AATAATTA
* ** * * * *
6352 AAAATTTTTCATAT-TAAATAATTAATATACATAAATATCATTAAT-AAT-ATTA
1 AAAAATAAT-ATATAAAAATAATAAATAAATATAAATAT-A-TAATAAATAATTA
* *
6404 TATAAAATAATAT-T-AAAAT-AT-AATATAT-TTAA-A-A-AATAAATAATTA
1 -A-AAAATAATATATAAAAATAATAAATAAATATAAATATATAATAAATAATTA
* * *
6450 AATAATAAAATAT-AAAA-AATATAATAAATTATAAATATAAAAATAAAT-A-TA
1 AAAAATAATATATAAAAATAATA-AATAAA-TATAAATAT-ATAATAAATAATTA
* *
6501 AAATATAAT-TA-ATTAAA-AATAAATAAATAT-AATA-AT--TAAAT-ATTA
1 AAAAATAATATATA-AAAATAATAAATAAATATAAATATATAATAAATAATTA
* * * * * *
6546 AAATTAATAAT-TAATTAATAT-ATAATTAAATTTAAATTAAATAATATAAT-TTTA
1 AAA--AATAATAT-ATAAAAATAATAAATAAATATAAA-TATATAATA-AATAATTA
* * *
6600 ATAAAATAATTATAATTAAAAA-AAT-AATAGAATTTAATTAT-TAAAAAATAA-T-
1 A-AAAATAA-TAT-A-TAAAAATAATAAATA-AATATAAATATATAATAAATAATTA
* * * *
6652 ACAAATAATATATATAAAT-A-AAATATATTATATATTATATAA-AAAT-ATATA
1 AAAAATAATATATAAAAATAATAAATA-AATATA-AATATATAATAAATAAT-TA
* * *
6703 TAAAA-AA-A-A-AAAAGTAATAAATAAATTATTAAT-TA-AA-AAATAA-TA
1 AAAAATAATATATAAAAATAATAAATAAA-TATAAATATATAATAAATAATTA
* * * * * *
6748 ATAGATAAAATAAAAAAATTATAAATATAA-AAAGAATA-ATAATATAAT-ATTA
1 AAAAATAATATATAAAAATAATAAATA-AATATA-AATATATAATA-AATAATTA
* * *
6800 ATATAATAATATAAAATAAAT-ATAAATAAAAATATATTATTATATAATAAATAA-T-
1 A-AAAATAATATATAA-AAATAATAAAT--AAATATA--AATATATAATAAATAATTA
* * *
6855 ATAAAT-ATATATATAAAA-AATATATATAT-TAAATA-ATAATAAATAA--A
1 AAAAATAATATATA-AAAATAATAAATAAATATAAATATATAATAAATAATTA
* * * *
6902 ATAATTAATTATAATAAAAAATAA-AATATATATATAAATATA-ATATAAATTAA-AA
1 AAAAATAA-TAT-AT-AAAAATAATAA-ATAAATATAAATATATA-ATAAA-TAATTA
* * *
6957 AAAATATAATATAATAAAAATTAAAAAAT-AATAATATAATA-AAAATAATTATATTA
1 AAAA-ATAATAT-ATAAAAA-TAATAAATAAAT-ATA-AATATATAATAAATA-ATTA
* *
7013 TTAAAAATAA-ATA-AATAAATAA-AAA-AAAT-TATAATATA-AATTAATATTTA
1 --AAAAATAATATATAA-AAATAATAAATAAATATA-AATATATAATAAATAATTA
* ** * *
7063 TATTATAA-A-ATGAATATATAATAAATATAATA-AAATATATTATAAAT-ATATA
1 AAAAATAATATAT-AA-AAATAATAAATA-AATATAAATATATAATAAATAAT-TA
* **
7115 AAAAAT-AT-T-T-AAATTTTTAAA-AAATATAAATA-ATAAT-AATAA-T-
1 AAAAATAATATATAAAAATAATAAATAAATATAAATATATAATAAATAATTA
* *
7158 ---AATAATATATATAAAT--TAGAT-AATATAAATATATAATAAA-AATTA
1 AAAAATAATATATAAAAATAATAAATAAATATAAATATATAATAAATAATTA
* * * * * *
7203 ATAAATAAAAATATATAAATAAT--AT-AATATTAAA-AAAAAATTTAATAATATA
1 AAAAAT-AATATATAAAAATAATAAATAAATA-TAAATATATAA-TAAATAAT-TA
* * * *
7255 TAAAATAATTTATAAAAATTATAAA-AAA-ATAATTA-AT-AT-AA-AATTA
1 AAAAATAATATATAAAAATAATAAATAAATATAAATATATAATAAATAATTA
* * * * *
7301 AAAAATTAA-AT-TAAATTATAATATAGTAACTATAAAT-TAAAAAAAATAA-T-
1 AAAAA-TAATATATAAA-AATAATA-AATAAATATAAATATATAATAAATAATTA
* * * *
7351 ATAAAT-ATATAAAAAAAT-ATAATATTATAATTATAAAAAT-TAGTAAAT-A-TA
1 AAAAATAATATATAAAAATAATAA-A-TA-AA-TATAAATATATAATAAATAATTA
* * * * *
7402 ATATAATATTATATAAAAAATAA-AAAAAAATAT-TATTTAATAATAAAT-ATTAA
1 A-AAAATAATATAT-AAAAATAATAAATAAATATAAATAT-ATAATAAATAATT-A
7455 ATATAAATTAATTAATATAAATAATAAT-AA-AAAT-TAAA-A-A-AAT-AATAATTA
1 A-A-AAA-TAA-T-ATATAAA-AATAATAAATAAATATAAATATATAATAAATAATTA
* ** *
7506 TAAAA-AAT-TATAATATAAT-ATAATATAAATA-ATTTATATAATAAATAATAA
1 AAAAATAATATATAA-A-AATAATAA-ATAAATATAAATATATAATAAATAATTA
* * * * *
7557 AATAAATATTTATATTTAAATAAATAAATTAAAATAATTTTAAA-ATATTATATATAATTTA
1 AA-AAATA---ATATAT-AA-AAAT-AA-T-AAATAAATATAAATATATAATAAATAA-TTA
* * *
7618 AAAAAT-ATA-AAAATAAATATTTAAAT-AATAAAAATA-ATAAT-AAT-ATATA
1 AAAAATAATATATAA-AAATA-ATAAATAAATATAAATATATAATAAATAAT-TA
* * * * *
7667 AAAAATTATA-ATAAATAAATATTAAAATAAAAAT-TATATAATAATAAAATATTTA
1 AAAAATAATATAT-AA-AAATAAT-AAATAAATATAAATAT-ATAAT-AAATAATTA
* * * *
7722 ATAAATATTAT-TAATAAATTAATTAA-AAATAT--ATATATAATTAATAA-TA
1 AAAAATAATATATAA-AAA-TAATAAATAAATATAAATATATAATAAATAATTA
* * * * *
7771 AATAAATATTATATATATAATAAATAAAT-AATATAATTA-AAAAAAAATTTAA-TA
1 AA-AAATAATATATA-AAAAT-AATAAATAAATATAAATATATAATAAA--TAATTA
* * *
7825 ATAAATAAAAT-TAAATTAATTATATTATATAAATATAAAT-T-TAAT-AATAA-TA
1 AAAAATAATATATAAA--AA-TA-A-TAAATAAATATAAATATATAATAAATAATTA
* * * * * * *
7877 AATAATAATAATTTAAATAA-AAAAAATTAATAAAAATAAAAAATATAA-AATTA
1 AAAAATAAT-ATATAAA-AATAATAAATAAATATAAATATATAATA-AATAATTA
*
7930 AAAAATTAAATTATATGTATAAAAT-ATAAATTAAATATAATATATTTAAATATAATAA-TA
1 AAAAA-T-AA-TATA--TA-AAAATAATAAA-TAAATATAA-ATATAT-AATA-AATAATTA
* * * * *
7990 ATAAATTATATATTAAAATAATAAA-ATAATA-ATAATAAATTAATAAATTATATA
1 AAAAATAATATATAAAAATAATAAATA-AATATA-AATATA-TAATAAATAAT-TA
* * *
8044 AATAA-AAT-TATAAAAATTATTTATATAAAATATAAATATAATATATAAA-AA-TA
1 AAAAATAATATATAAAAA-TA-ATAAAT-AAATATAAATAT-ATA-ATAAATAATTA
* * * *
8097 TAAAATAA-ATAT-AATATAAT-AATATTATTTAATATATATAATAAATTAATT-
1 AAAAATAATATATAAAAATAATAAATA-AATATAA-ATATATAATAAA-TAATTA
* * * * *
8148 ---ATTAAT-T-TAATAAATAATTAAT--ATAT-TAT-TATATTATATAA--A
1 AAAAATAATATATAA-AAATAATAAATAAATATAAATATATAATAAATAATTA
*
8190 AAAAATAATATTATATAAAATTATATAATTAATATAATAAATAATATAATATAATAA--A
1 AAAAATAATA-TATA-AAAA-TA-ATAAATAA-AT-ATAAAT-ATATAATA-AATAATTA
* * * **
8248 ATAAAATAATATAGTAATATTAATAAATATATTATAAA-A-A-AATATTTAA-TA
1 A-AAAATAATATA-TAAAAATAATAAATA-AATATAAATATATAATAAATAATTA
* * *
8299 TAAAA-AA-ATATAAAAATTATAAATAATTA-AAATATAAAATAATATAATAATTA
1 AAAAATAATATATAAAAATAATAAATAAATATAAATAT---ATAATA-AATAATTA
* * * * * * *
8352 AAAATAAAAAATTAAAAAAATATAAAAAAAAATTATAAATAAAATAA-AAATAATAA
1 AAAA-ATAATA-TATAAAAATA-ATAAATAAA-TATAAAT-ATATAATAAATAATTA
* * * * *
8408 AAAAATTAAAAAATAAATTAATAATATTAA-AAATAAAAATATA-AATATATAAATA
1 AAAAA-TAATATATAAA--AATAATA--AATAAATATAAATATATAATAAATAATTA
* * * * *
8463 AAATATTATAT-TAAAAA-AAT--TTAATTTTATAATAT-TATATAAAATATATT-
1 AAAAATAATATATAAAAATAATAAATAAATATA-AATATATA-AT-AAATA-ATTA
* * ** *
8513 ATAAAT--TA-AT--AAATAATAAAATAATTATTTATA-ATAATATATAA-TA
1 AAAAATAATATATAAAAATAAT-AAATAAATATAAATATATAATAAATAATTA
*
8559 AAAAAT-ATAAATAAATAA-AATTAAATAAATATAAA-ATATAAT-AATAA--A
1 AAAAATAATATATAAA-AATAA-TAAATAAATATAAATATATAATAAATAATTA
* * *
8607 ACAAAATATATAATATAATAATGATTAAA-AATATATAAAATAAAATATAA-AAATAATAA
1 A-AAAATA-AT-ATATAAAAAT-AATAAATAA-ATAT-AAAT---ATATAATAAATAATTA
*
8666 AAAAATAATATAATATAAATAA
1 AAAAATAATAT-ATAAAAATAA
8688 ATAGCAATTT
Statistics
Matches: 4944, Mismatches: 948, Indels: 1881
0.64 0.12 0.24
Matches are distributed among these distances:
40 3 0.00
41 2 0.00
42 14 0.00
43 18 0.00
44 48 0.01
45 93 0.02
46 152 0.03
47 264 0.05
48 316 0.06
49 480 0.10
50 537 0.11
51 565 0.11
52 474 0.10
53 428 0.09
54 395 0.08
55 338 0.07
56 270 0.05
57 198 0.04
58 134 0.03
59 69 0.01
60 74 0.01
61 47 0.01
62 10 0.00
63 9 0.00
64 5 0.00
65 1 0.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.34
Consensus pattern (52 bp):
AAAAATAATATATAAAAATAATAAATAAATATAAATATATAATAAATAATTA
Found at i:1885 original size:38 final size:35
Alignment explanation
Indices: 1768--6292 Score: 293
Period size: 34 Copynumber: 128.1 Consensus size: 35
1758 TAATAATTTT
* *
1768 TAATAATAATAATATAAAAT-TATATT-TATAAATAA
1 TAATAA-AATAATA-AAAATATAAATTAAATAAATAA
* *
1803 AAATAAAAT-ATAAAAATTATAAA-TAATTAAATTAA
1 TAATAAAATAATAAAAA-TATAAATTAAATAAA-TAA
* *
1838 TTAATAATATAATTAAAAAAAT-AATATATAATAAATAA
1 -TAATAAAATAA-TAAAAATATAAAT-TA-AATAAATAA
*
1876 TAAT-AAAT-ATAAATATAT-AATT-AAT-AAT--
1 TAATAAAATAATAAAAATATAAATTAAATAAATAA
1904 TAA-AAAATAATAAAAAT-T-AA--AAATAAAT--
1 TAATAAAATAATAAAAATATAAATTAAATAAATAA
* *
1932 TAAAAAAATAAATAAAAATAT-AATT-ACTAAATAA
1 TAATAAAAT-AATAAAAATATAAATTAAATAAATAA
* * * * * *
1966 AAAT-GATTATTAAAAA-A-AAATTAAAATAATTAT
1 TAATAAAATAATAAAAATATAAATT-AAATAAATAA
* * **
1999 TAAT-TATTAATTTAAAT-T--ATTAAATAAATAA
1 TAATAAAATAATAAAAATATAAATTAAATAAATAA
* * * *
2030 AAATAGAATTAATATAAA-A-AAATTAAAATTATATAA
1 TAATA-AAATAATAAAAATATAAATT-AAA-TAAATAA
* *
2066 -AAAAAAATTATATAAAAATAATAAATAATTTCATATAAATAA
1 TAATAAAA-TA-ATAAAAAT-AT--A-AA-TT-AAATAAATAA
* *
2108 AAAT-AAGTATATAAAAA-ATAAA--AAATAAATATA
1 TAATAAAATA-ATAAAAATATAAATTAAATAAATA-A
*
2141 TAA-AAAA-AAT-AAAA-ATAAA-TAAAAAAATAA
1 TAATAAAATAATAAAAATATAAATTAAATAAATAA
* * * *
2171 TAAT-TAAT-TTAAATATA-AAATTAAATATAT-A
1 TAATAAAATAATAAAAATATAAATTAAATAAATAA
* * * **
2202 TAA-AATTATAAATAAAAATATAAAATAATTTTAT-A
1 TAATAA-AAT-AATAAAAATATAAATTAAATAAATAA
* * * *
2237 -AATTAAATTATAAAAAAAT-AA-TAAA-AAAAAA
1 TAATAAAATAATAAAAATATAAATTAAATAAATAA
* *
2268 TAA-AAAATTAAT-GAAATAT-TATTAAAT-AATAA
1 TAATAAAA-TAATAAAAATATAAATTAAATAAATAA
*
2300 TATATAATATATAATAATTAAATATAAAAGTTATAATAAATTAT
1 TA-ATAA-A-ATAATAA--AAATAT-AAA-TTA-AATAAA-TAA
* *
2344 TAATATAATAAAATAAATATATAAATT--A-AAATAA
1 TAATA-AA-ATAATAAAAATATAAATTAAATAAATAA
* * *
2378 T-ATAAAAAAATAATAAT-TAAA-TAAATAATTAA
1 TAATAAAATAATAAAAATATAAATTAAATAAATAA
*
2410 TAAATTAAAT-ATAAAAA-AT-AATATAAATAAATAAA
1 T-AATAAAATAATAAAAATATAAAT-TAAATAAAT-AA
* *
2445 TAATATAAATAAT--ATATAT-AATTAAAAATAATAA
1 TAATA-AAATAATAAAAATATAAATTAAATA-AATAA
* * * * *
2479 TAAATAATAATATTATAAATATTATATTATATATA-AA
1 T-AATAA-AATAATAAAAATA-TAAATTAAATAAATAA
* * * *
2516 TATTAAAAAAAT-AAAATATTATATTAAATTAATAA
1 TAATAAAATAATAAAAATA-TAAATTAAATAAATAA
* * *
2551 AAAAAAAATTAA-AATTAATATAAATT-AA-AAATAA
1 TAATAAAA-TAATAA-AAATATAAATTAAATAAATAA
* ** *
2585 TAATTAAAAATTATTAATATAATA-AAAAAAAATTAAATAT
1 TAA-T-AAAA-TAATAA-A-AATATAAATTAAA-TAAATAA
*
2625 TAATAATAATTAATATAAAATATATATTATATATAAATAA
1 TAATAA-AA-TAATA-AAAATATAAATTA-A-ATAAATAA
* * ** *
2665 TAAATAAATATCAT-TATTTATTAA-T-AATAAATATA
1 T-AATAAA-ATAATAAAAATATAAATTAAATAAATA-A
* * *
2700 TAATATAATTAA-ATAAAT-TAAA-TAATTAAATAA
1 TAATA-AAATAATAAAAATATAAATTAAATAAATAA
* * *
2733 -AATAAAA-ATATAATAA-ATAAA-TAAA-AAACAT
1 TAATAAAATA-ATAAAAATATAAATTAAATAAATAA
* *
2764 TAATAATATAAT-AAAATAT-AATAAAAT-AATAA
1 TAATAAAATAATAAAAATATAAATTAAATAAATAA
* * *
2796 AAATAATATAATAATAATAT-AA--AAATAATATTAA
1 TAATAAAATAATAAAAATATAAATTAAATAA-A-TAA
* *
2830 TAA-AAAATAATAAATAA-ATAAA-TAAATTATTAA
1 TAATAAAATAATAAA-AATATAAATTAAATAAATAA
*
2863 AAATAAAAATAATAAAAA-ATAAATT-AATATAATAA
1 TAAT-AAAATAATAAAAATATAAATTAAATA-AATAA
** * * * * *
2898 -AATATTATTATAAAAAAAAAAATAAAATTATATAA
1 TAATAAAATAATAAAAATATAAATTAAA-TAAATAA
* *
2933 TAAAAATAAGTAATAAATAAATAAAAATTAAAATCTTAAA-AA
1 TAATAA-AA-TAAT-AA-AAATATAAATT-AAA---TAAATAA
* * * ** *
2975 TAA-ATAATATTATATTTATAAA--AATATAATTAA
1 TAATAAAATAATAAAAATATAAATTAA-ATAAATAA
* *
3008 TAATTATATAAT-AAAA-ATAAATTAAAATAAATTAA
1 TAATAAAATAATAAAAATATAAATT-AAATAAA-TAA
* * * *
3043 TATTATTAAT-TTAAAAATATATA-T-AAT-AAT-A
1 TAATA-AAATAATAAAAATATAAATTAAATAAATAA
* * * *
3074 T-ATTAAATTATATAAA-A-AAATAAAATAAA-AA
1 TAATAAAATAATAAAAATATAAATTAAATAAATAA
* *
3105 TATATAAAA-AATAAAAATATATAATTCAAAATTATTAA
1 TA-ATAAAATAATAAAAATATA-AATT--AAATAAATAA
* *
3143 -AATAAATATAAT-ATAATATAATAATAAAT-AAT-A
1 TAATAAA-ATAATAAAAATATAA-ATTAAATAAATAA
* *
3176 TAATTAAAAT--TAAGAATAAAAATTAAAATAAA-AA
1 TAA-TAAAATAATAAAAATATAAATT-AAATAAATAA
* * * * * * *
3210 AAATATATTATATAATAATTTTAATTAAA-ATATAA
1 TAATAAAATA-ATAAAAATATAAATTAAATAAATAA
* * * *
3245 T-ATATAATTATAAAAATAAAAATT-AATAATTAA
1 TAATAAAATAATAAAAATATAAATTAAATAAATAA
* * *
3278 TAAATATTAA-AA-AAAAATAATATATTATATTAAA-AA
1 T-AATA-AAATAATAAAAAT-ATAAATTA-AATAAATAA
*
3314 T--TAAAA-AA-AAAAAT-TAAAATTAAAATAAAAAA
1 TAATAAAATAATAAAAATAT-AAATT-AAATAAATAA
* * *
3346 AAAAAAAAT-ATAATAAATATAAAATTAAATATAAT-T
1 TAATAAAATAATAA-AAATAT-AAATTAAATA-AATAA
* * * **
3382 TAA-AAAATAATTATATATATCAAAATAATTATAAATTT
1 TAATAAAATAA-TAAAAATAT-AAATTAA--ATAAATAA
*
3420 TAA-AAAATAA-AATAAATA-AAATT-AAT-ATTAA
1 TAATAAAATAATAA-AAATATAAATTAAATAAATAA
* *
3451 TAA-AAAAAAAT-AAAATATTAATT-AAT--ATAA
1 TAATAAAATAATAAAAATATAAATTAAATAAATAA
* *
3481 T-ATAAAATTATTAAAAA-ATAAAATTATATAAAATAA
1 TAATAAAA-TAATAAAAATAT-AAATTAAAT-AAATAA
* * *
3517 TCATTATATATATAAATATATTATAAA-T-AATAAA-AA
1 TAATAAAATA-ATAAA-A-A-TATAAATTAAATAAATAA
* * * *
3553 TAATATAATAAATAAAATATATATTATAAAAAAAATAA
1 TAATAAAAT-AATAAAA-ATATA-AATTAAATAAATAA
* **
3591 -AATAAAA-AATAAAATAATATATAATT-TAT-AATTT
1 TAATAAAATAAT-AAA-AATATA-AATTAAATAAATAA
* *
3625 TAATAAAA-AA-AATAATATATATTTAAATAAATAA
1 TAATAAAATAATAAAAATATA-AATTAAATAAATAA
* **
3659 T-ATCAAATAAATTTTAAATATAAA-TAAATATAATAA
1 TAATAAAAT-AA-TAAAAATATAAATTAAATA-AATAA
* * *
3695 TAAT-AAAT-ATATAAAT-TTAATTATATAAAATAA
1 TAATAAAATAATAAAAATATAAATTAAAT-AAATAA
* **
3728 TATTATTAT-ATAAAAA-ATAAATATAATATAAAT-A
1 TAATAAAATAATAAAAATATAAAT-TAA-ATAAATAA
* *
3762 TATTAAAATATATATAATAATA-AAA--AAA-AAAAAA
1 TAATAAAATA-ATA-AA-AATATAAATTAAATAAATAA
* * * * *
3796 AAATAAATTACTAAATTATATATAA--AAATAAACAA
1 TAATAAAATAATAAA-AATATA-AATTAAATAAATAA
* * *
3831 GTAATAATTATAAATAAAAATATAAA-AAAATTATATAAA
1 -TAATAA-AAT-AATAAAAATATAAATTAAA-TAAAT-AA
* * *
3870 TAA-AAAAT-ATAAAAAAATAAATAATAATGTAATAA
1 TAATAAAATAATAAAAATATAAATTA-AAT-AAATAA
* *
3905 TTAGTTATATAAA-ATATAAAAATA-ATATTTAA-AAATAA
1 -TA---ATA-AAATA-ATAAAAATATAAATTAAATAAATAA
*
3943 TAAATTAAATAAT-AAAA-ATAAA-TATAATAAATAAA
1 T-AATAAAATAATAAAAATATAAATTA-AATAAAT-AA
* *
3978 TTAA-AAAATTTAATATAAAATA-AAAATAAATAAA-AT
1 -TAATAAAA--TAATA-AAAATATAAATTAAATAAATAA
* * *
4014 TAAATATAAATAAATATAAAATATTAA-TATAATTAATTA
1 T-AATA-AAAT-AATA-AAAATATAAATTA-AATAAATAA
* * * * *
4053 TAATAAAATATTAATTTAATAT--ATAAAATTAAT-T
1 TAATAAAATAATAA--AAATATAAATTAAATAAATAA
** * * *
4087 TAATATTAT-TTAAAAATATAAAATAAAAAAATATA
1 TAATAAAATAATAAAAATATAAATTAAATAAATA-A
* * * *
4122 AAATAAATATATTTTAAAATATAAAATAAAATATATATAA
1 TAATAAA-ATA-ATAAAAATAT-AAATTAAATA-A-ATAA
* * * *
4162 T-ATAAAAAAATAAAAATTTTAAAAATTTAATATAT-A
1 TAATAAAATAATAAAAA---TATAAATTAAATAAATAA
* **
4198 GAATATTATAA-AAAAATATAAA--AAATAAATAA
1 TAATAAAATAATAAAAATATAAATTAAATAAATAA
* * * *
4230 AAATATAAA-AATATATATTAAAATATTAAATAAAT-A
1 TAATA-AAATAATA-AAAATATAA-ATTAAATAAATAA
*
4266 T-AT-ATA-AATAAAAATAATAAA-T-AATAATATAA
1 TAATAAAATAATAAAAAT-ATAAATTAAATAA-ATAA
* * *
4298 TTAT-AAAT-ATAATAA-ATAAATATATAATAAATTA
1 TAATAAAATAATAAAAATATAAAT-TA-AATAAATAA
* ** *
4332 TAA-ACAAAAAATTTATATAT-AA--AAAT-AAT-A
1 TAATA-AAATAATAAAAATATAAATTAAATAAATAA
4362 TAAATAAATATATATAAAAA-A-AAATTAAA-AAATAA
1 T-AATAAA-ATA-ATAAAAATATAAATTAAATAAATAA
*
4397 TTATATAAAA-ATATAAAAAAAT-AA-TATAATAAATAA
1 -TA-ATAAAATA-ATAAAAATATAAATTA-AATAAATAA
** *
4433 -AATTAAAATCTTATAAA-A-AAA--AAA-AAATAA
1 TAA-TAAAATAATAAAAATATAAATTAAATAAATAA
* *
4463 TAATATATTAATATAATAATAATAAATTAAATATAATAAAA
1 TAATAAAATAATA-AA-AAT-ATAAATTAAATA-AAT--AA
* * * * *
4504 AAATAATATAATAAAAATATTAATATAAAATTATATTAT
1 TAATAAAATAATAAAAATA-TAA-ATTAAA-TA-AATAA
* * ** *
4543 TAATTAATATAATTAAATTATATAAAAAAAATAATTAA
1 TAA-TAAAATAA-TAAA-AATATAAATTAAATAAATAA
* *
4581 AAATATAAATATAATAAAAA-AAAATATTAAA-AATATTATA
1 TAATA-AAA--TAATAAAAATATAA-ATTAAATAA-A-TA-A
* * * * *
4621 TATTAATATTATTATAATATAAATTAATTATAAATAAA
1 TAATAAAATAATAAAAATATAAATTAA--ATAAAT-AA
* *
4659 TATATAATATTAA-AAATATATAAATTAAATAATATAA
1 TA-ATAA-AATAATAAAAATATAAATTAAATAA-ATAA
*
4696 T-ATAAAAATACATAAATAA-A-AAATTAAA-AGA-AA
1 TAAT-AAAATA-ATAAA-AATATAAATTAAATAAATAA
* *
4729 -AATAAAATTATTATAATAAA-A-AAATATTAAT-AATATT
1 TAATAAAA-TA--ATAA-AAATATAAAT-TAAATAAATA-A
* * *
4766 TAAAAAAATAATATAAAAAATTTAA-TAAATAAA-AA
1 TAATAAAATAATA-AAAATA-TAAATTAAATAAATAA
* *
4801 TATATATTAAATTAA-AAAAAT-TAAA-TATATATATAA
1 TA-ATA--AAA-TAATAAAAATATAAATTAAATAAATAA
* *
4837 TAATTAAAATAATAAAAAATAAAAATTAATAAAAGATAA
1 TAA-TAAAATAAT-AAAAATATAAATTAA-ATAA-ATAA
*
4876 TAATAAATTAA-AAAAATTATATAA-TAATATAAAT-A
1 TAATAAAATAATAAAAA-TATA-AATTAA-ATAAATAA
*
4911 TAA-AAATATATTATATAATAATA-ATAATTAAAT-TAT-A
1 TAATAAA-ATA--ATA-AA-AATATA-AATTAAATAAATAA
* * * *
4948 TAAATAAATATTATATATAATAT-AATAAAATATATATA
1 T-AATAAA-ATAATA-AAAATATAAATTAAATAAATA-A
* * *
4986 TTATAAAAT-ATAAATAT-TAAA-TATAATTAATAA
1 TAATAAAATAATAAAAATATAAATTA-AATAAATAA
* * * * * **
5019 CATATATATATTATTATAA-ATAAA-TAAATATTTAA
1 TA-ATA-AAATAATAAAAATATAAATTAAATAAATAA
* * * *
5054 TAAATAATATTATAAAATAAATAAATATATATAAATAA
1 T-AATAAAATAATAAAA-ATATAAAT-TAAATAAATAA
*
5092 TAAATATAAA-AATAATAATA-AAA--AAATATAATAA
1 T-AATA-AAATAATAAAAATATAAATTAAATA-AATAA
5126 TAAT-AAATAAAGTTAAAAAATTATAAA-TAAA-AAATAA
1 TAATAAAAT-AA--T-AAAAA-TATAAATTAAATAAATAA
* *
5163 -ATATATAATAA-ATAAAATA-AATATATAAA-AAATCA
1 TA-ATAAAATAATA-AAAATATAA-AT-TAAATAAATAA
5198 TAATAAAA-AATAAATAAT-TAATATATAAA-AAA-AA
1 TAATAAAATAATAAA-AATATAA-AT-TAAATAAATAA
* *
5232 TAATAAAATAAAAATAAAAAAAAAAATTAAAATAAAATAA
1 TAATAAAAT---AATAAAAATATAAATT-AAAT-AAATAA
* * * *
5272 TAATTAATTAAATATTAAAATATAAAATATATAAAT-A
1 TAATAAAAT-AATA--AAAATATAAATTAAATAAATAA
** *
5309 -AAT-AAA-AATAATTAT-TTAATTATAATATAA-AA
1 TAATAAAATAATAAAAATATAAATTA-AATA-AATAA
* * **
5341 -AATATAAA-AATATATATATTTTATTATAA-AAATAA
1 TAATA-AAATAATAAAAATA-TAAATTA-AATAAATAA
5376 -AAT-AAATATATATAAAA-ATAAATATAATATATTAA-AA
1 TAATAAAATA-ATA-AAAATATAAAT-TAA-ATA--AATAA
* * *
5413 TAA-AATAATAATAAAAATAT-TATAAAATAATTAA
1 TAATAA-AATAATAAAAATATAAATTAAATAAATAA
* * *
5447 TAATATAAATAATAAATATCTATAAAATAAAATAAAAAA
1 TAATA-AAATAATAAA-A-ATAT-AAATTAAATAAATAA
* *
5486 TTA-AAAATAATTTATAAAA-A-AAATAAAAT-AATAA
1 TAATAAAATAA--TA-AAAATATAAATTAAATAAATAA
* * * * *
5520 -ATTAATATAATAATAAATTTAACATAATAATAAAAAA
1 TAATAAAATAATAA-AAATATAA-ATTA-AATAAATAA
*
5557 TTATATATAAAT--TACAAATA-AAATATAAATATAATAA
1 -TA-ATA-AAATAATAAAAATATAAAT-TAAATA-AATAA
* *
5594 AAAT-AAATAATATAAAAATATTAAA--AAA-AAAT-T
1 TAATAAAAT-A-ATAAAAATA-TAAATTAAATAAATAA
* * * *
5627 TAATTATAAATTATATTAAATAATAATTTAGAAATAATATTA
1 TAA-TA-AAATAATA-AAAAT-ATAAATT--AAATAA-ATAA
* *
5669 TATATTATATATATAAAAA-AT-AATTAAAATAAATAA
1 TA-ATAAAATA-ATAAAAATATAAATT-AAATAAATAA
**
5705 -ATATAATTTAATATTAAAATATAAATTATAATAAATATA
1 TA-ATAAAATAATA--AAAATATAAATTA-AATAAATA-A
* * *
5744 TAAATAAATAGAATAAAATTATTATAATAAAAATAAAT-A
1 T-AATAAA-ATAATAAAAATA-TA-AAT-TAAATAAATAA
* *
5783 -AATAAAATTATAATAAA-ATAAAATAAATAAATAA
1 TAATAAAATAATAA-AAATATAAATTAAATAAATAA
* *
5817 TATAAATAAATAATAAAAA-ATAAATTATAA-AAAAAA
1 TA-ATA-AAATAATAAAAATATAAATTA-AATAAATAA
* *
5853 T-ATAAAA-AATAAATATAATATTATATAAA-AAATAA
1 TAATAAAATAATAAAAAT-ATA-AAT-TAAATAAATAA
* * * *
5888 TTAAATTAAAAAAATTAAAATATAAAAATATATAAATAA
1 -T-AA-TAAAATAATAAAAATAT-AAATTAAATAAATAA
* * *
5927 TATTATATTTAATAATAAATATTTATAA-TAAAT-AATAA
1 TA--ATA--AAATAATAAAAATATA-AATTAAATAAATAA
* * * *
5965 AAATAAAGTTAATTATAAAAT-TAAATATAATTTAATAA
1 TAATAAA-ATAA-TA-AAAATATAAAT-TAAATAAATAA
* * ** * *
6003 AAATATAATTAATTTTAAATAT--ATTAATATTATTAA
1 TAATA-AAATAA-TAAAAATATAAATTAA-ATAAATAA
6039 -AA-AATAATAATAAAAATATTAAAATTAATATAATATAA
1 TAATAA-AATAATAAAAATA-T-AAATTAA-ATAA-ATAA
*
6077 TTAA-AATAATAATAAAATATGTAAAATATTAAA-AAATAAA
1 -TAATAA-AATAATAAAA-A--TATAA-ATTAAATAAAT-AA
* * **
6117 TAAT-AAAT-TTAAATATA-AAAAAAAATAAA-AA
1 TAATAAAATAATAAAAATATAAATTAAATAAATAA
* * *
6148 TATTATAAATAATATATATATAAATTTAATAATAAATAAA
1 TAATA-AAATAATAAAAATATAAA-TT-A-AATAAAT-AA
*
6188 TAATTAAATTAAATATAAAAT-T-AATTAAA-AAAT-A
1 TAA-TAAAAT-AATA-AAAATATAAATTAAATAAATAA
* *
6222 TAA-AAAA-AATAATAATATAATTTAAATAAAT-A
1 TAATAAAATAATAAAAATATAAATTAAATAAATAA
* *
6254 TTATAATAATAATTATAAAAT-TAAA-TAAA-AATTAA
1 TAATAA-AATAA-TA-AAAATATAAATTAAATAAATAA
6289 TAAT
1 TAAT
6293 TATATTTATA
Statistics
Matches: 3280, Mismatches: 603, Indels: 1214
0.64 0.12 0.24
Matches are distributed among these distances:
27 3 0.00
28 18 0.01
29 22 0.01
30 86 0.03
31 171 0.05
32 235 0.07
33 307 0.09
34 447 0.14
35 428 0.13
36 375 0.11
37 351 0.11
38 300 0.09
39 204 0.06
40 157 0.05
41 101 0.03
42 44 0.01
43 26 0.01
44 5 0.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.33
Consensus pattern (35 bp):
TAATAAAATAATAAAAATATAAATTAAATAAATAA
Found at i:1931 original size:58 final size:58
Alignment explanation
Indices: 1867--3147 Score: 200
Period size: 58 Copynumber: 21.8 Consensus size: 58
1857 AATAATATAT
1867 AATAAATAATAATAAATATAAATATATAATTAATAATTAAAAAATAATAAAAATTAAA
1 AATAAATAATAATAAATATAAATATATAATTAATAATTAAAAAATAATAAAAATTAAA
* * * * *
1925 AATAAATTAA-AA-AAATAAATAAAAATATAATTACTAAAT-AAAAATGAT---TATTAAA
1 AATAAA-TAATAATAAAT--ATAAATATATAATTAATAATTAAAAAATAATAAAAATTAAA
* * * * ** *
1980 AAAAAATTAA-AATAATTATTAAT-TATTAATTTA-AATTATTAAATAAATAAAAA-TAGA
1 AATAAA-TAATAATAAATATAAATATA-TAATTAATAATTAAAAAAT-AATAAAAATTAAA
* ** * **
2037 ATTAATATAA-AA-AAAT-TAAAATTATATAAAAAAAAATTATATAAAAATAATAAATAATTTCA
1 AATAA-ATAATAATAAATAT-AAA-TATATAATTAATAA-T-TA-AAAAATAATAAA-AATTAAA
* * * ** * *
2099 TATAAATAAAAATAAGTATATAAA-AAATAAAAAATAAATATATAAAAAAAATAAAAATAAATA
1 AATAAATAATAATAA--ATATAAATATATAATTAAT-AAT-TA-AAAAATAATAAAAATTAA-A
* * * * *
2162 AAAAAATAATAATTAATTTAAATATAAAATTAAATATATATAAAATTATAAATAAAAA-TATAA
1 AATAAATAATAATAAATATAAATATATAATT-AATA-AT-TAAAA-AAT-AATAAAAATTA-AA
* * ** *
2225 AAT-AAT-TTTATAAAT-TAAAT-TATAAAAAAATAA-TAAAAAAAAATAAAAAATTAATGA
1 AATAAATAATAATAAATATAAATATAT-AATTAATAATTAAAAAATAAT-AAAAATTAA--A
* * * * **
2282 AATATTATTAAATAAT-AATATATAATATATAA-TAATTAAATATAAAAGTTATAATAAATTATT
1 AATA--AAT-AATAATAAATATA-AATATATAATTAA-TAATTA-AAAAATAATAA-AAATTAAA
*
2345 AATATAATAA-AATAAATATATAA-AT-TAA--AATAA-TATAAAAA-AATAATAATT--A
1 AATA-AATAATAATAAATATA-AATATATAATTAATAATTA-AAAAATAATAAAAATTAAA
* * *
2397 AATAAATAATTAATAAAT-TAAATATA-AA-AAATAATATAAATAAAT-A-AATAA-TATA
1 AATAAATAA-TAATAAATATAAATATATAATTAATAAT-TAAA-AAATAATAAAAATTAAA
* * * * * * *
2452 AATAATATATATAATTAAAAAT-AATA-ATAAATAATAATATTATAAAT-AT-TATATTATA
1 AATAA-ATA-ATAA-TAAATATAAATATATAATTAATAAT-TAAAAAATAATAAAAATTAAA
* * * *
2510 TATAAATATTAA-AAAAATAAA-ATATTATATT-A-AATTAATAAA-AA-AAAAATT-AA
1 AATAAATAATAATAAATATAAATATA-TA-ATTAATAATTAAAAAATAATAAAAATTAAA
* * *
2563 AAT---TAAT-ATAAAT-TAAAAATAATAATTAAAAATTATTAATATAATAAAAAAAAATTAAA
1 AATAAATAATAATAAATATAAATAT-ATAATTAATAATTA--AA-A-AAT-AATAAAAATTAAA
* * * * * * **
2622 TATTAATAATAATTAATATAAA-ATATATATT-AT-ATATAAATAATAAATAAATATCATT
1 AATAAATAATAATAAATATAAATATATA-ATTAATAAT-TAAAAAAT-AATAAAAATTAAA
* * * * *
2680 ATTTATTAATAATAAATATATA-ATATAATTAAATAAATTAAATAATTAA-ATAAAA-TAAA
1 AATAAATAATAATAAATATAAATATATAATT-AAT-AATTAAA-AAATAATA-AAAATTAAA
* * * * *
2739 AAT--ATAATAAATAAATA-AAAAACATTAA-TAATATAATAAAATATAATAAAATAATAAA
1 AATAAATAAT-AATAAATATAAATATA-TAATTAATA-ATTAAAAAATAATAAAA-ATTAAA
* *
2797 AATAATATAATAAT-AATATAAA-A-ATAA-TATTAA-TAAAAAATAATAAATAA--ATA
1 AATAA-ATAATAATAAATATAAATATATAATTAATAATTAAAAAATAATAAA-AATTAAA
* * ** * *
2850 AATAAATTATTAA-AAATAAAAATA-ATAAAAAATAAATTAATATAATAA-AATATTATTATAA
1 AATAAA-TAATAATAAATATAAATATATAATTAAT-AATTAA-AAAATAATAA-A-AATTA-AA
* * * * * * *
2911 AAAAAAAAATAA-AATTATATAATAAAAATAAGTAATAAATAAATAAA-AATTAAAATCTTAAA
1 AATAAATAATAATAA--ATATAA-ATATATAATTAATAATTAAA-AAATAA-TAAAA-ATTAAA
** * * * *
2973 AATAAATAATATTATATTTATAAAAATATAATTAATAATTATATAATAAAAATAAATT-AA
1 AATAAATAATA--ATAAATATAAATATATAATTAATAATTAAAAAATAATAA-AAATTAAA
* * * *
3033 AATAAATTAATATTATTAATTTAAAAATATATATAATAATATATTAAATTATATAA-AAAAA-TA
1 AATAAA-TAATA--A-TAA-ATATAAATATATA-ATTAATA-ATTAAA--AAATAATAAAAATTA
3096 AA
57 AA
* * * *
3098 ATAAAAATATATAAAAAATAAAAATATATAATTCAA-AATTATTAAAATAA
1 A-ATAAATA-ATAATAAATATAAATATATAATT-AATAATTA-AAAAATAA
3148 ATATAATATA
Statistics
Matches: 912, Mismatches: 161, Indels: 299
0.66 0.12 0.22
Matches are distributed among these distances:
49 8 0.01
50 11 0.01
51 13 0.01
52 11 0.01
53 41 0.04
54 51 0.06
55 67 0.07
56 47 0.05
57 82 0.09
58 112 0.12
59 54 0.06
60 58 0.06
61 71 0.08
62 96 0.11
63 105 0.12
64 40 0.04
65 31 0.03
66 10 0.01
67 4 0.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.33
Consensus pattern (58 bp):
AATAAATAATAATAAATATAAATATATAATTAATAATTAAAAAATAATAAAAATTAAA
Found at i:1944 original size:13 final size:12
Alignment explanation
Indices: 1795--1954 Score: 56
Period size: 13 Copynumber: 12.3 Consensus size: 12
1785 AATTATATTT
1795 ATAAATAAAAATA
1 ATAAATAAAAA-A
*
1808 A-AATATAAAAATT
1 ATAA-ATAAAAA-A
*
1821 ATAAATAATTAAA
1 ATAAATAA-AAAA
* * * *
1834 TTAATTAATAAT
1 ATAAATAAAAAA
*
1846 ATAATTAAAAAA
1 ATAAATAAAAAA
*
1858 ATAATATATAATAA
1 ATAA-ATA-AAAAA
*
1872 AT-AATAATAAAT
1 ATAAATAA-AAAA
*
1884 ATAAATATATAATTA
1 ATAAATA-A-AA-AA
*
1899 ATAATTAAAAAATA
1 ATAAAT-AAAAA-A
1913 ATAAA-AATTAAAA
1 ATAAATAA--AAAA
1926 ATAAATTAAAAAA
1 ATAAA-TAAAAAA
*
1939 ATAAATAAAAAT
1 ATAAATAAAAAA
1951 ATAA
1 ATAA
1955 TTACTAAATA
Statistics
Matches: 113, Mismatches: 19, Indels: 31
0.69 0.12 0.19
Matches are distributed among these distances:
11 1 0.01
12 37 0.33
13 42 0.37
14 24 0.21
15 8 0.07
16 1 0.01
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
ATAAATAAAAAA
Found at i:1966 original size:4 final size:4
Alignment explanation
Indices: 1821--1947 Score: 61
Period size: 4 Copynumber: 32.2 Consensus size: 4
1811 TATAAAAATT
* * * * *
1821 ATAA ATAA TTAA ATTA ATTA ATAA TATAA TTAA AAAA ATAA TATATA ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA -ATAA ATAA ATAA ATAA -ATA-A ATAA
* * *
1872 AT-A AT-A ATAA AT-- ATAA ATAT AT-A ATTA ATAA TTAA A-AA ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
* * *
1914 TAAAA ATTA A-AA ATAA ATTAA AAAA ATAA ATAA A
1 -ATAA ATAA ATAA ATAA A-TAA ATAA ATAA ATAA A
1948 AATATAATTA
Statistics
Matches: 93, Mismatches: 19, Indels: 22
0.69 0.14 0.16
Matches are distributed among these distances:
2 2 0.02
3 13 0.14
4 60 0.65
5 17 0.18
6 1 0.01
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (4 bp):
ATAA
Found at i:2047 original size:21 final size:20
Alignment explanation
Indices: 1798--8464 Score: 221
Period size: 20 Copynumber: 325.9 Consensus size: 20
1788 TATATTTATA
*
1798 AATAAAAATAAAATATAAA--
1 AATATAAATAAAA-ATAAATT
*
1817 AATTATAAATAATTAAATTAATT
1 AA-TATAAATAA--AAATAAATT
*
1840 AATAATATAATTAAAA-AAA-T
1 AAT-ATA-AATAAAAATAAATT
*
1860 AATATATAATAAATAAT-AATA
1 AATATA-AATAAA-AATAAATT
* *
1881 AATATAAATATATAATTAA-T
1 AATATAAATA-AAAATAAATT
1901 AAT-TAAA-AAATAATAAA--
1 AATATAAATAAA-AATAAATT
1918 AAT-TAAA-AATAAATTAAA--
1 AATATAAATAA-AAA-TAAATT
*
1936 AAAATAAATAAAAATATAATT
1 AATATAAATAAAAATA-AATT
* *
1957 -A-CTAAATAAAAATGATTATT
1 AATATAAATAAAAAT-A-AATT
* * *
1977 AAAAAAAAATTAAAATAATTATT
1 -AATATAAATAAAAATAA--ATT
* ** *
2000 AATTATTAATTTAAAT-TATT
1 AA-TATAAATAAAAATAAATT
2020 AA-ATAAATAAAAATAGAATT
1 AATATAAATAAAAATA-AATT
*
2040 AATATAAA-AAAATTAAAATT
1 AATATAAATAAAAAT-AAATT
2060 -ATAT--A-AAAAA-AAATT
1 AATATAAATAAAAATAAATT
* *
2075 ATATAAAAATAATAAATAATTT
1 A-ATATAAATAA-AAATAAATT
*
2097 CATATAAATAAAAATAAGTATAT
1 AATATAAATAAAAATAA--AT-T
2120 AA-A-AAATAAAAAATAAA-T
1 AATATAAAT-AAAAATAAATT
*
2138 -ATATAAA-AAAAATAAAAAT
1 AATATAAATAAAAAT-AAATT
*
2157 AA-ATAAAAAAATAAT-AATT
1 AATATAAATAAA-AATAAATT
*
2176 AATTTAAATATAAAATTAAA-T
1 AATATAAATA-AAAA-TAAATT
*
2197 ATATATAAAATTATAAATAAA--
1 A-ATAT-AAA-TAAAAATAAATT
**
2218 AATATAAAATAATTTTATAAATT
1 AATAT-AAATAA--AAATAAATT
*
2241 AAATTATAAAAAAATAATAAA--
1 -AA-TATAAATAAA-AATAAATT
* *
2262 AA-A-AAATAAAAAATTAATGA
1 AATATAAAT-AAAAATAAAT-T
* *
2282 AATATTATTAAATAATAATATAT
1 AATATAAATAAA-AATAA-AT-T
2305 AATATATAATAATTAAATATAA--
1 AATATA-AATAA--AAATA-AATT
* *
2327 AAGT-TATAATAAATTATTAATAT
1 AA-TATA-AATAAA-AATAAAT-T
2350 AATA-AAATAAATATATAAATT
1 AATATAAATAAA-A-ATAAATT
* *
2371 AAAATAATATAAAAA-AATAAT
1 AATATAA-ATAAAAATAA-ATT
* *
2392 AAT-TAAATAAATAATTAATA
1 AATATAAATAAA-AATAAATT
*
2412 AAT-TAAATATAAA-AAA-T
1 AATATAAATAAAAATAAATT
2429 AATATAAAT--AAATAAA-T
1 AATATAAATAAAAATAAATT
*
2446 AATATAAATAATATATATAATT
1 AATATAAATAA-AAATA-AATT
*
2468 -A-A-AAATAATAATAAA-T
1 AATATAAATAAAAATAAATT
* * *
2484 AATAATATTATAAATATTATATT
1 AAT-ATA-AATAAA-AATAAATT
2507 ATATATAAATATTAAAA-AAA-T
1 A-ATATAAATA--AAAATAAATT
* * * *
2528 AA-A-ATATTATATTAAATT
1 AATATAAATAAAAATAAATT
*
2546 AATA-AAAAAAAAATTAAAATT
1 AATATAAATAAAAA-T-AAATT
2567 AATATAAATTAAAAAT-AA-T
1 AATATAAA-TAAAAATAAATT
*
2586 -A-AT---TAAAAAT-TATT
1 AATATAAATAAAAATAAATT
*
2600 AATAT-AATAAAAAAAAATT
1 AATATAAATAAAAATAAATT
* *
2619 AA-AT-ATTAATAAT-AATT
1 AATATAAATAAAAATAAATT
* *
2636 AATAT--A-AAATATATATT
1 AATATAAATAAAAATAAATT
2653 ATATATAAATAATAAATAAATAT
1 A-ATATAAATAA-AAATAAAT-T
* * * *
2676 CATTATTTATTAATAATAAA-T
1 -AATA-TAAATAAAAATAAATT
2697 -ATATAATATAATTAAATAAATT
1 AATATAA-ATAA--AAATAAATT
*
2719 AAATAATTAAATAAAATAAAAATAT
1 -AAT-A-TAAATAAAA-ATAAAT-T
*
2744 AATAAATAAATAAAAA-ACATT
1 AAT--ATAAATAAAAATAAATT
2765 AATAATATAAT-AAAATATAA-T
1 AAT-ATA-AATAAAAATA-AATT
*
2786 AAAAT-AATAAAAAT-AATAT
1 AATATAAATAAAAATAAAT-T
2805 AATAATAATATAAAAATAATATT
1 AAT-ATAA-ATAAAAATAA-ATT
* *
2828 AATAAAAAATAATAAATAAATA
1 AAT-ATAAATAA-AAATAAATT
2850 AATA-AATTATTAAAAATAAA--
1 AATATAA--A-TAAAAATAAATT
*
2870 AATA-ATA-AAAAATAAATT
1 AATATAAATAAAAATAAATT
*
2888 AATAT-AAT-AAAATATTATT
1 AATATAAATAAAAATA-AATT
* *
2907 -ATAAAAAAAAAAATAAAATT
1 AATATAAATAAAAAT-AAATT
*
2927 -ATAT-AATAAAAAT-AAGT
1 AATATAAATAAAAATAAATT
*
2944 AATAAATAAATAAAAATTAA--
1 AAT--ATAAATAAAAATAAATT
*
2964 AATCTTAAA-AATAAATAATATT
1 AAT-ATAAATAA-AAATAA-ATT
**
2986 -ATATTTATAAAAATATAATTAAT
1 AATATAAATAAAAATA-AA-T--T
3009 AATTATATAATAAAAATAAATT
1 AA-TATA-AATAAAAATAAATT
* * * *
3031 AAAATAAATTAATAT-TATT
1 AATATAAATAAAAATAAATT
* *
3050 AATTTAAA-AATATATATAA-T
1 AATATAAATAA-AAATA-AATT
* **
3070 AATAT-ATTAAATTATATAAAAA
1 AATATAAATAAA--A-ATAAATT
*
3092 AATA-AAATAAAAATATA-T
1 AATATAAATAAAAATAAATT
*
3110 AA-A-AAATAAAAATATA-T
1 AATATAAATAAAAATAAATT
3127 AAT-TCAAAATTATTAAAATAAATAT
1 AATAT--AAA-TA--AAAATAAAT-T
*
3152 AATATAATATAATAATAAA-T
1 AATATAA-ATAAAAATAAATT
* * *
3172 AATAT-AATTAAAATTAA-G
1 AATATAAATAAAAATAAATT
* * *
3190 AATAAAAATTAAAATAAA-A
1 AATATAAATAAAAATAAATT
* * * *
3209 AAAATATATTATATAATAATTTT
1 AATATA-AATA-AAAATAA-ATT
*
3232 AAT-TAAAATATAATATATAATT
1 AATAT-AAATA-AAAATA-AATT
*
3254 -ATAAAAATAAAAATTAATAATT
1 AATATAAATAAAAA-T-A-AATT
*
3276 AATA-AATATTAAAAA-AAAAT
1 AATATAA-A-TAAAAATAAATT
* **
3296 AATATATTATATTAA-AAATT
1 AATATA-AATAAAAATAAATT
3316 AA-A-AAA-AAAAATTAAAATT
1 AATATAAATAAAAA-T-AAATT
* *
3335 AAAATAAA-AAAAA-AAA-A
1 AATATAAATAAAAATAAATT
*
3352 AATAT-AATAAATATAAAATT
1 AATATAAATAAAAAT-AAATT
*
3372 AAATATAATTTAAAAA-ATAATT
1 -AATATAA-ATAAAAATA-AATT
* *
3394 -ATATATATCAAAAT-AATT
1 AATATAAATAAAAATAAATT
* **
3412 -ATA-AATTTTAAA-AAA-T
1 AATATAAATAAAAATAAATT
* *
3428 AAAATAAATAAAATTAATATT
1 AATATAAATAAAAATAA-ATT
*
3449 AATA-AAA-AAAAATAAAAT
1 AATATAAATAAAAATAAATT
* * *
3467 ATTAATTAATATAATATAAAATT
1 AAT-ATAAATA-AAAAT-AAATT
* * *
3490 ATTAAAAAATAAAATTATATAAAAT
1 AAT-ATAAAT-AAA--A-ATAAATT
* * *
3515 AATCAT-TATATATATAAATAT
1 AAT-ATAAATAAAAATAAAT-T
* *
3536 ATTATAAATAATAA-AAA-T
1 AATATAAATAAAAATAAATT
3554 AATAT-AATAAATAA-AATATAT
1 AATATAAATAAA-AATAA-AT-T
* *
3575 ATTATAAA-AAAAATAAAAT
1 AATATAAATAAAAATAAATT
3594 AA-A-AAAT-AAAATAATATAT
1 AATATAAATAAAAATAA-AT-T
* * *
3613 AATTTATAATTTTAATAAAAAAAAT
1 AA--TATAA--ATAA-AAATAAATT
* **
3638 AATATATATTTAAATAAA-T
1 AATATAAATAAAAATAAATT
*
3657 AATATCAAAT--AAAT--TTT
1 AATAT-AAATAAAAATAAATT
*
3674 AAATATAAATAAATAT-AA-T
1 -AATATAAATAAAAATAAATT
*
3693 AATAATAAAT--ATATAAATTT
1 AAT-ATAAATAAAAATAAA-TT
*
3713 AAT-TATAT-AAAATAATATT
1 AATATAAATAAAAATAA-ATT
* *
3732 ATTATATA-AAAAATAAATAT
1 AATATAAATAAAAATAAAT-T
* * *
3752 AATATAAAT-ATATTAAAAT
1 AATATAAATAAAAATAAATT
3771 ATATATAATAATAAAAA-AAA--
1 A-ATAT-A-AATAAAAATAAATT
* * *
3791 AAAAAAAATAAATTACTAAATT
1 AATATAAATAAA--AATAAATT
3813 ATATATAAAAATAAACAAGT-AA-T
1 A-ATAT--AAATAAA-AA-TAAATT
*
3836 AATTATAAATAAAAATATAA-A
1 AA-TATAAATAAAAATA-AATT
* * * *
3857 AAAAT-TATATAAATAAA-A
1 AATATAAATAAAAATAAATT
3875 AATAT-AA-AAAAATAAA-T
1 AATATAAATAAAAATAAATT
** * * *
3892 AATA-ATGTAATAATTAGTT
1 AATATAAATAAAAATAAATT
*
3911 ATATAAAATATAAAAAT-AA-T
1 A-ATATAA-ATAAAAATAAATT
* *
3931 -ATTTAAA-AATAATAAATT
1 AATATAAATAAAAATAAATT
3949 AA-AT-AATAAAAATAAATAT
1 AATATAAATAAAAATAAAT-T
* *
3968 AATAAATAAATTAAAA-AATTT
1 AAT--ATAAATAAAAATAAATT
3989 AATATAAAATAAAAATAAA-T
1 AATAT-AAATAAAAATAAATT
* *
4009 AAAATTAAATATAAATAAA-T
1 AATA-TAAATAAAAATAAATT
**
4029 -ATA-AAATATTAATATAATT
1 AATATAAATAAAAATA-AATT
*
4048 AAT-TATAATAAAATATTAATTT
1 AATATA-AATAAAA-A-TAAATT
* *
4070 AATAT--ATAAAATTAATTT
1 AATATAAATAAAAATAAATT
** *
4088 AATATTATTTAAAAATATAAAAT
1 AATA-TAAAT-AAAA-ATAAATT
*
4111 AA-AAAAATATAAAATAAATAT
1 AATATAAATA-AAAATAAAT-T
* * *
4132 ATTTTAAAATATAAAATAAAAT
1 AATAT-AAATA-AAAATAAATT
4154 ATATATAATATAAAAAAATAAAAATT
1 A-ATATAA-AT--AAAAAT--AAATT
* * *
4180 -TTAAAAATTTAATATATAGAA-T
1 AATATAAA--TAA-AAATA-AATT
*
4202 ATTATAAA-AAAATATAAA--
1 AATATAAATAAAA-ATAAATT
*
4220 AA-ATAAATAAAAATATAA-A
1 AATATAAATAAAAATA-AATT
*
4239 AATATATATTAAAATATTAAATAAAT
1 AATATA-AATAAAA-A-TAAAT---T
*
4265 ATATATAAATAAAAAT-AATA
1 A-ATATAAATAAAAATAAATT
**
4285 AATAATAATATAATTATAAA-T
1 AAT-ATAA-ATAAAAATAAATT
* *
4306 -ATAATAAATAAATATATAATA
1 AAT-ATAAATAAAAATA-AATT
* *
4327 AATTATAAA-CAAAA-AATTT
1 AA-TATAAATAAAAATAAATT
*
4346 ATATATAAA-AATAATATAAATA
1 A-ATATAAATAA-AA-ATAAATT
* *
4368 AATATATATAAAAAAAAATT
1 AATATAAATAAAAATAAATT
*
4388 AA-A-AAATAATTATATAAA--
1 AATATAAATAA--AAATAAATT
* *
4406 AATATAAAAAAATAATATAATA
1 AATATAAATAAA-AATA-AATT
**
4428 AATA-AAATTAAAATCTTATAAAAA
1 AATATAAA-TAAAA----ATAAATT
* * * *
4452 AAAAAAAATAATAATATATT
1 AATATAAATAAAAATAAATT
*
4472 AATAT-AATAATAATAAATT
1 AATATAAATAAAAATAAATT
4491 AA-ATATAAT-AAAA-AAA-T
1 AATATA-AATAAAAATAAATT
4508 AATAT-AATAAAAAT--ATT
1 AATATAAATAAAAATAAATT
** *
4525 AATATAAAATTATATTATTAATT
1 AATAT-AAA-TA-AAAATAAATT
* *
4548 AATATAATTAAATTATATAAA-A
1 AATATAAATAAA--A-ATAAATT
* * *
4570 AAAATAATTAAAAAT--ATA
1 AATATAAATAAAAATAAATT
*
4588 AATAT-AATAAAAA-AAAAT
1 AATATAAATAAAAATAAATT
* * ** *
4606 ATTAAAAAT-ATTATATATT
1 AATATAAATAAAAATAAATT
* * *
4625 AATATTATTATAATATAAATT
1 AATATAAATA-AAAATAAATT
4646 AATTATAAATAAATATATAATATT
1 AA-TATAAATAAA-A-ATAA-ATT
*
4670 AA-A-AATATATAAATTAAA-T
1 AATATAA-ATA-AAAATAAATT
* *
4689 AATATAATATAAAAATACATA
1 AATATAA-ATAAAAATAAATT
* * *
4710 AATAAAAAATTAAAAGAAAAATAA
1 AAT-ATAAA-TAAAA-ATAAAT-T
4734 AATTATTATAATAAAAA-AATATT
1 AA-TA-TA-AATAAAAATAA-ATT
** *
4757 AATAATATTTAAAAAAATAATAT
1 AAT-ATAAATAAAAATA-AAT-T
*
4780 AA-A-AAATTTAATAAATAAAAAT
1 AATATAAA--TAA-AAAT-AAATT
*
4802 ATATATTAAATTAAAA-AAATT
1 A-ATA-TAAATAAAAATAAATT
* *
4823 AA-ATATATATATAAT-AATT
1 AATATAAATA-AAAATAAATT
*
4842 AAAAT-AATAAAAAATAAAAATT
1 AATATAAAT-AAAAAT--AAATT
* *
4864 AATAAAAGATAATAATAAATT
1 AATATAA-ATAAAAATAAATT
* * *
4885 AA-AAAAAT-TATAT-AA-T
1 AATATAAATAAAAATAAATT
*
4901 AATATAAATATAAAAATATATT
1 AATAT-AA-ATAAAAATAAATT
*
4923 -ATATAATAATAATAATTAAATT
1 AATAT-A-AATAA-AAATAAATT
* *
4945 -ATATAAATAAATATTATATAT
1 AATATAAATAAA-AATAAAT-T
4966 AATAT-AATAAAATATATATATT
1 AATATAAATAAAA-ATA-A-ATT
4988 -ATA-AAATATAAATATTAAATAT
1 AATATAAATA-AAA-A-TAAAT-T
*
5010 AAT-T-AATAACATATATATATT
1 AATATAAATAA-A-A-ATAAATT
* *
5031 ATTATAAATAAATAA-ATATTT
1 AATATAAATAAA-AATA-AATT
*
5052 AATAAATAATATTATAAAATAAATA
1 AAT--ATAA-A-TA-AAAATAAATT
*
5077 AATATATATAAATAATAAA-T
1 AATATAAATAAA-AATAAATT
* * **
5097 -ATAAAAATAATAATAAAAA
1 AATATAAATAAAAATAAATT
5116 AATATAATAATAATAAATAAAGTT
1 AATAT-A-AATAA-AAATAAA-TT
*
5140 AA-A-AAATTATAAATAAA--
1 AATATAAA-TAAAAATAAATT
*
5157 AA-ATAAATATATAATAAA-T
1 AATATAAATA-AAAATAAATT
*
5176 AAAATAAATATATAAA-AAATCAT
1 AATATAAATA-A-AAATAAAT--T
5199 AATA-AAA-AATAAAT-AATT
1 AATATAAATAA-AAATAAATT
* *
5217 AATATATAAAAAAAAT-AATAA
1 AATATA-AATAAAAATAAAT-T
* *
5238 AATAAAAATAAAAAAAAAAATT
1 AATATAAAT--AAAAATAAATT
* * *
5260 AAAATAAAATAATAATTAATT
1 AATAT-AAATAAAAATAAATT
*
5281 AAATATTAAAATATAAAATATA-T
1 -AATA-T-AAATA-AAAATAAATT
5304 AA-ATAAATAAAAAT-AATT
1 AATATAAATAAAAATAAATT
* * * *
5322 -ATTTAATTATAATATAAA-A
1 AATATAAATA-AAAATAAATT
* *
5341 AATATAAA-AATATATATATT
1 AATATAAATAA-AAATAAATT
* * *
5361 -TTAT-TATAAAAATAAAATA
1 AATATAAATAAAAAT-AAATT
*
5380 AATATATATAAAAATAAATAT
1 AATATAAATAAAAATAAAT-T
* *
5401 AATAT--ATTAAAATAAAAT
1 AATATAAATAAAAATAAATT
* *
5419 AATAATAAA-AATATTATAAAAT
1 AAT-ATAAATAA-A-AATAAATT
* *
5441 AAT-TAATAATATAAAT-AATA
1 AATAT-A-AATAAAAATAAATT
** *
5461 AATATCTAT-AAAATAAAAT
1 AATATAAATAAAAATAAATT
5480 AA-A-AAATTAAAAAT-AATT
1 AATATAAA-TAAAAATAAATT
*
5498 --TATAAA-AAAAATAAAAT
1 AATATAAATAAAAATAAATT
*
5515 AATAAATTAATATAATAATAAATTT
1 AAT--A-TAA-ATAAAAATAAA-TT
*
5540 AACAT-AATAATAAA-AAATT
1 AATATAAATAA-AAATAAATT
*
5559 ATATATAAATTACAAATAAAATAT
1 A-ATATAAA-TAAAAAT-AAAT-T
5583 AA-ATATAATAAAAATAAA-T
1 AATATA-AATAAAAATAAATT
*
5602 AATATAAAAATATTAAAAAAAAATTT
1 AATAT---AA-A-TAAAAATAAA-TT
* * *
5628 AATTATAAATTATATTAAA-T
1 AA-TATAAATAAAAATAAATT
** *
5648 AATA-ATTTAGAAATAATATT
1 AATATAAATAAAAATAA-ATT
*
5668 ATATATTATATATATAAAAAATAATT
1 A-ATA-TA-A-ATA-AAAATA-AATT
* * *
5694 AAAATAAATAAATATAATTT
1 AATATAAATAAAAATAAATT
* *
5714 AATATTAAAATATAAATTATAATAA
1 AATA-T-AAATA-AAAATA-AAT-T
5739 ATATATAAATAAATAGAATAAAATT
1 A-ATATAAAT-AA-A-AAT-AAATT
* *
5764 ATTAT-AATAAAAATAAATA
1 AATATAAATAAAAATAAATT
* * *
5783 AATA-AAATTATAATAAAAT
1 AATATAAATAAAAATAAATT
* *
5802 AAAATAAATAAATAATATAAAT
1 AATATAAATAAA-AATA-AATT
5824 AA-AT-AATAAAAAATAAATTAT
1 AATATAAAT-AAAAATAAA-T-T
* *
5845 AAAAAAAATATAAAAAATAAATAT
1 -AATATAA-AT-AAAAATAAAT-T
*
5869 AATATTATATAAAAA-ATAATT
1 AATA-TAAATAAAAATA-AATT
* *
5890 AA-ATTAAA-AAAATTAAAAT
1 AATA-TAAATAAAAATAAATT
*
5909 -ATAAAAATATATAAATAATATT
1 AATATAAATA-A-AAATAA-ATT
* **
5931 -ATATTTAATAATAAATATTTAT
1 AATA-TAAATAA-AAATAAAT-T
*
5953 AATAAATAATAAAAATAAAGTT
1 AATATA-AATAAAAATAAA-TT
*
5975 AAT-T--ATAAAATTAAATAT
1 AATATAAATAAAAATAAAT-T
*
5993 AAT-TTAATAAAAATATAATT
1 AATATAAATAAAAATA-AATT
* *
6013 AAT-T---T-TAAATATATT
1 AATATAAATAAAAATAAATT
* *
6028 AATATTATTAAAAA-ATAA-T
1 AATATAAATAAAAATA-AATT
* *
6047 AATAAAAATATTAAAATTAATAT
1 AATATAAATA--AAAATAAAT-T
*
6070 AATAT-AATTAAAAT-AA-T
1 AATATAAATAAAAATAAATT
6087 AATA-AAATATGTAAAAT--ATT
1 AATATAAATA---AAAATAAATT
6107 AA-A-AAATAAATAATAAATTT
1 AATATAAATAAA-AATAAA-TT
* *
6127 AAATATAAAAAAAAATAAAAAT
1 -AATATAAATAAAAAT-AAATT
*
6149 ATTATAAATAATATATATATAAATTT
1 AATATAAAT-A-A-A-A-ATAAA-TT
6175 AATAATAAATAAATAATTAAATT
1 AAT-ATAAATAAA-AA-TAAATT
* * *
6198 AAATATAAA-ATTAATTAAA-A
1 -AATATAAATA-AAAATAAATT
6218 AATATAAA-AAAAAT-AA-T
1 AATATAAATAAAAATAAATT
**
6235 AATAT-AATTTAAATAAA-T
1 AATATAAATAAAAATAAATT
* *
6253 ATTAT-AATAATAATTATAA--
1 AATATAAATAA-AAATA-AATT
6272 AAT-TAAATAAAAATTAATAATT
1 AATATAAATAAAAA-T-A-AATT
* * *
6294 ATATTTATATATAAAATAAAAT
1 A-ATATAAATA-AAAATAAATT
* * *
6316 AATAATAATTTAATTAATAAATCA
1 AAT-ATAA-ATAA-AAATAAAT-T
**
6340 ATATATTAAATAAAAAT-TTTT
1 A-ATA-TAAATAAAAATAAATT
* * *
6361 CATATTAAATAATTAATATACATA
1 AATA-TAAATAA--AA-ATAAATT
* * *
6385 AATATCATTAATAAT--ATT
1 AATATAAATAAAAATAAATT
* *
6403 -ATATAAAATAATATTAAAATAT
1 AATAT-AAATAAAAAT-AAAT-T
**
6425 AATATATTTAAAAAATAAA-T
1 AATATAAAT-AAAAATAAATT
**
6445 AAT-TAAATAATAAAATATAAAA
1 AATATAAAT-A-AAAATA-AATT
*
6467 AATAT-AATAAATTATAAATAT
1 AATATAAATAAA-AATAAAT-T
*
6488 AAAAATAAATATAAAATATAATT
1 -AATATAAATA-AAAATA-AATT
6511 AAT-TAAA-AATAAATAAATAT
1 AATATAAATAA-AAATAAAT-T
*
6531 AATAATTAAATATTAAAATTAA-T
1 AAT-A-TAAATA--AAAATAAATT
* *
6554 AAT-T-AATTAATATATAATT
1 AATATAAATAAAAATA-AATT
* *
6573 AAATTTAAAT-TAAAT-AATAT
1 -AATATAAATAAAAATAAAT-T
* * *
6593 AATTTTAAT-AAAATAATTAT
1 AATATAAATAAAAATAAAT-T
*
6613 AAT-TAAAAAAATAATAGAATTT
1 AATATAAATAAA-AATA-AA-TT
6635 AATTATTAAA-AAATAATACAAATAAT
1 AA-TA-TAAATAAA-AAT--AAAT--T
*
6661 ATATATAAAT-AAAATATATT
1 A-ATATAAATAAAAATAAATT
*
6681 ATATATTATATAAAAAT--A-T
1 A-ATA-TAAATAAAAATAAATT
* *
6700 -ATATAAA-AAAAAAAAAGT
1 AATATAAATAAAAATAAATT
* *
6718 -A-ATAAATAAATTATTAATT
1 AATATAAATAAA-AATAAATT
* *
6737 AA-A-AAATAATAATAGA-T
1 AATATAAATAAAAATAAATT
*
6754 AAAATAAA-AAAATTATAAATAT
1 AATATAAATAAAA--ATAAAT-T
*
6776 AA-AAAGAATAATAATATAATATT
1 AATATA-AATAA-AA-ATAA-ATT
* *
6799 AATAT-AAT-AATATAAAATA
1 AATATAAATAAAAAT-AAATT
*
6818 AATATAAATAAAAATATATT
1 AATATAAATAAAAATAAATT
*
6838 ATTATATAATAAATAATATAAATAT
1 AATATA-AAT-AA-AA-ATAAAT-T
*
6863 ATATATAAA-AAATATATATATT
1 A-ATATAAATAAA-A-ATAAATT
*
6885 AA-AT-AATAATAAATAAAAT
1 AATATAAATAA-AAATAAATT
* * *
6904 AAT-T-AATTATAATAAA-A
1 AATATAAATAAAAATAAATT
*
6921 AATA-AAATATATATATAAATAT
1 AATATAAATA-A-AAATAAAT-T
6943 AATATAAATTAAAAA-AAATAT
1 AATATAAA-TAAAAATAAAT-T
*
6964 AATAT-AATAAAAATTAAAAAAT
1 AATATAAATAAAAA-T--AAATT
6986 AATAATATAATAAAAAT-AATT
1 AAT-ATA-AATAAAAATAAATT
* *
7007 -ATATTATTAAAAATAAA-T
1 AATATAAATAAAAATAAATT
7025 AA-ATAAATAAAAA-AAATTAT
1 AATATAAATAAAAATAAA-T-T
** *
7045 AATATAAATTAATATTTATATT
1 AATATAAA-TAA-AAATAAATT
* * *
7067 -ATA-AAATGAATATATAATA
1 AATATAAATAAAAATA-AATT
* *
7086 AATAT-AATAAAATATATTATA
1 AATATAAATAAAA-ATA-AATT
7107 AATATATAA-AAAATATTTAAATT
1 AATATA-AATAAAA-A--TAAATT
* *
7130 --TTTAAA-AAATATAAA-T
1 AATATAAATAAAAATAAATT
*
7146 AATA-ATAATAATAAT-AA-T
1 AATATA-AATAAAAATAAATT
* * *
7164 ATATATAAAT-TAGATAATATA
1 A-ATATAAATAAAAATAA-ATT
*
7185 AATATATAATAAAAATTAA-T
1 AATATA-AATAAAAATAAATT
*
7205 AA-ATAAA-AATATATAAA-T
1 AATATAAATAA-AAATAAATT
*
7223 AATATAATATTAAAAAAAAATTT
1 AATATAA-A-TAAAAATAAA-TT
*
7246 AATA-ATATATAAAAT-AATT
1 AATATAAATA-AAAATAAATT
* * *
7265 TATAAAAATTATAAAAAAATAATT
1 AAT-ATAA--ATAAAAATA-AATT
*
7289 AATATAAA-ATTAAA-AAATT
1 AATATAAATA-AAAATAAATT
* * * *
7308 AA-ATTAAATTATAATATAGT
1 AATA-TAAATAAAAATAAATT
7328 AACTATAAATTAAAAA-AAA-T
1 AA-TATAAA-TAAAAATAAATT
*
7348 AATATAAATATATAAAAAAATAT
1 AATATAAATA-A-AAATAAAT-T
* *
7371 AATATTATAATTATAA-AAATT
1 AATA-TA-AATAAAAATAAATT
* *
7392 -A-GTAAATATAATATAATATT
1 AATATAAATA-AAAATAA-ATT
**
7412 -ATATAAA-AAATAA-AAAAA
1 AATATAAATAAA-AATAAATT
** *
7430 AATATTATTTAATAATAAA-T
1 AATA-TAAATAAAAATAAATT
* *
7450 -AT-TAAATATAAATTAATT
1 AATATAAATAAAAATAAATT
*
7468 AATATAAATAATAATAAA--
1 AATATAAATAAAAATAAATT
7486 AAT-T-AA-AAAAAT-AA-T
1 AATATAAATAAAAATAAATT
*
7501 AAT-TATAA-AAAATTATAATAT
1 AATATA-AATAAAAATA-AAT-T
*
7522 AATAT-AATATAAAT-AATT
1 AATATAAATAAAAATAAATT
* *
7540 TATAT-AATAAATAATAAAAT
1 AATATAAATAAA-AATAAATT
** * **
7560 AA-ATATTTATATTTAAA-T
1 AATATAAATAAAAATAAATT
* *
7578 AA-ATAAATTAAAATAATTTT
1 AATATAAATAAAAATAA-ATT
* * * * *
7598 AAAAT-ATTATATATAATTT
1 AATATAAATAAAAATAAATT
*
7617 AA-AAAATATAAAAATAAATATTT
1 AATATAA-ATAAAAAT-AA-A-TT
*
7640 AA-AT-AATAAAAATAATAAT
1 AATATAAATAAAAATAA-ATT
*
7659 AATATATAA-AAAATTATAA-T
1 AATATA-AATAAAAATA-AATT
7679 AA-ATAAATATTAAAATAAA--
1 AATATAAATA--AAAATAAATT
*
7698 AATTATATAATAATAAA-ATATTT
1 AA-TATA-AATAA-AAATA-AATT
**
7721 AATA-AATATTATTAATAAATT
1 AATATAA-A-TAAAAATAAATT
* *
7742 AAT-T-AA-AAATATATATAT
1 AATATAAATAAAAATAAAT-T
7760 AAT-T-AATAATAAATAAATAT
1 AATATAAATAA-AAATAAAT-T
* *
7780 TATATATATAATAAATAAA-T
1 AATATAAATAA-AAATAAATT
* *
7800 AATATAATTAAAAAAAAATTT
1 AATATAAATAAAAATAAA-TT
*
7821 AATAATAAATAAAATTAAATT
1 AAT-ATAAATAAAAATAAATT
*
7842 AATTATATTATATAAATATAAATTT
1 AA-TATA--A-ATAAAAATAAA-TT
7867 AATA-ATAATAAATAAT-AA-T
1 AATATA-AATAAA-AATAAATT
*
7886 AATTTAAATAAAAA-AAATT
1 AATATAAATAAAAATAAATT
* *
7905 AATAAAAATAAAAA-ATA-T
1 AATATAAATAAAAATAAATT
* * *
7923 AAAATTAA-AAAATTAAATT
1 AATATAAATAAAAATAAATT
**
7942 -ATATGTATAAAATATAAATT
1 AATATAAATAAAA-ATAAATT
* *
7962 AA-AT--AT-AATAT-ATTT
1 AATATAAATAAAAATAAATT
*
7977 AA-ATATAATAATAATAAATT
1 AATATA-AATAAAAATAAATT
* * *
7997 ATATATTAA-AATAATAAAAT
1 A-ATATAAATAAAAATAAATT
8017 AATA-ATAATAAATTAATAAATT
1 AATATA-AATAAA--AATAAATT
8039 -ATATAAATAAAATTATAAAAATT
1 AATATAAATAAAA--AT--AAATT
* *
8062 -ATTTATATAAAATATAAATAT
1 AATATAAATAAAA-ATAAAT-T
* *
8083 AATATATAA-AAATATAAAATA
1 AATATA-AATAAAAAT-AAATT
* *
8104 AATATAATATAATAATATTATTT
1 AATATAA-ATAA-AA-ATAAATT
*
8127 AATATATATAATAAATTAATTATT
1 AATATAAATAA-AAA-TAA--ATT
* *
8151 AATTTAATAAATAATTAATATATT
1 AA--T-ATAAATAA-AAATAAATT
*
8175 ATTATATTATATAAAAA-AAA-T
1 A--ATA-TAAATAAAAATAAATT
*
8196 AATATTATATAAAATTATATAATT
1 AATA-TAAATAAAA--ATA-AATT
8220 AATAT-AAT--AAAT-AATAT
1 AATATAAATAAAAATAAAT-T
*
8237 AATAT-AAT-AAAATAAAAT
1 AATATAAATAAAAATAAATT
**
8255 AATATAGTAATATTAATAAATAT
1 AATATA--AATAAAAATAAAT-T
* *
8278 ATTAT-AA-AAAAAT-ATTT
1 AATATAAATAAAAATAAATT
8295 AATATAAA-AAAATATAAAAATT
1 AATATAAATAAAA-AT--AAATT
* * *
8317 ATAAATAATTAAAATATAAAAT
1 A-ATATAAATAAAA-ATAAATT
8339 AATATAATAATTAAAAATAAAAAATT
1 AATAT-A-AA-TAAAAAT---AAATT
* * *
8365 AAAAAAATATAAAAAAAAATT
1 AATATAA-ATAAAAATAAATT
*
8386 ATAAATAAAATAAAAAT-AA-T
1 A-ATAT-AAATAAAAATAAATT
*
8406 AA-AAAAATTAAAAAATAAATT
1 AATATAAA-T-AAAAATAAATT
*
8427 AATA-ATATTAAAAATAAA--
1 AATATA-AATAAAAATAAATT
8445 AATATAAATATATAAATAAA
1 AATATAAATA-A-AAATAAA
8465 ATATTATATT
Statistics
Matches: 4853, Mismatches: 852, Indels: 1885
0.64 0.11 0.25
Matches are distributed among these distances:
13 8 0.00
14 3 0.00
15 33 0.01
16 66 0.01
17 316 0.07
18 499 0.10
19 710 0.15
20 842 0.17
21 689 0.14
22 637 0.13
23 513 0.11
24 274 0.06
25 147 0.03
26 84 0.02
27 32 0.01
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
AATATAAATAAAAATAAATT
Found at i:2050 original size:19 final size:19
Alignment explanation
Indices: 2017--2168 Score: 66
Period size: 19 Copynumber: 7.8 Consensus size: 19
2007 AATTTAAATT
* * *
2017 ATTAAATAAATAAAAATAGA
1 ATTATATAAA-AAAATTAAA
2037 ATTAATATAAAAAAATTAAA
1 ATT-ATATAAAAAAATTAAA
2057 ATTATAT--AAAAA--AAA
1 ATTATATAAAAAAATTAAA
*
2072 ATTATATAAAAATAATAAATA
1 ATTATATAAAAA-AATTAA-A
*
2093 ATTTCATATAAATAAAA--ATA
1 A-TT-ATATAAA-AAAATTAAA
* *
2113 AGTATAT-AAAAAATAAAAA
1 ATTATATAAAAAAAT-TAAA
*
2132 ATAAATATATAAAAAAAATAAA
1 AT---TATATAAAAAAATTAAA
* *
2154 AATAAATAAAAAAAT
1 ATTATATAAAAAAAT
2169 AATAATTAAT
Statistics
Matches: 103, Mismatches: 12, Indels: 35
0.69 0.08 0.23
Matches are distributed among these distances:
15 10 0.10
16 4 0.04
17 10 0.10
18 6 0.06
19 19 0.18
20 17 0.17
21 9 0.09
22 11 0.11
23 15 0.15
24 2 0.02
ACGTcount: A:0.71, C:0.01, G:0.01, T:0.27
Consensus pattern (19 bp):
ATTATATAAAAAAATTAAA
Found at i:2074 original size:15 final size:15
Alignment explanation
Indices: 2054--2083 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
2044 TAAAAAAATT
2054 AAAATTATATAAAAA
1 AAAATTATATAAAAA
2069 AAAATTATATAAAAA
1 AAAATTATATAAAAA
2084 TAATAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
AAAATTATATAAAAA
Found at i:2089 original size:24 final size:24
Alignment explanation
Indices: 2053--2268 Score: 58
Period size: 23 Copynumber: 8.8 Consensus size: 24
2043 ATAAAAAAAT
*
2053 TAAAATTATATAAAAAAAAATTATA
1 TAAAAATA-ATAAAAAAAAATTATA
*** *
2078 TAAAAATAATAAATAATTTCATATAAA
1 TAAAAATAATAAA-AA-AAAAT-TATA
* *
2105 TAAAAATAAGTATATAAAAA--ATA
1 TAAAAATAA-TAAAAAAAAATTATA
*
2128 -AAAAATAAATATATAAAAAA--A-A
1 TAAAAAT-AATA-AAAAAAAATTATA
*
2150 TAAAAATAAATAAAAAAATAATAAT-
1 TAAAAAT-AATAAAAAAA-AATTATA
**
2175 TAATTTAAAT-ATAAAATTAAA-TATA
1 TAA---AAATAATAAAAAAAAATTATA
* *
2200 TATAAAATTATAAATAAAAA-TATA
1 TA-AAAATAATAAAAAAAAATTATA
** **
2224 -AAATAATTTTATAAATTAAATTATA
1 TAAA-AATAATA-AAAAAAAATTATA
*
2249 AAAAAATAATAAAAAAAAAT
1 TAAAAATAATAAAAAAAAAT
2269 AAAAAATTAA
Statistics
Matches: 141, Mismatches: 29, Indels: 43
0.66 0.14 0.20
Matches are distributed among these distances:
22 16 0.11
23 34 0.24
24 31 0.22
25 26 0.18
26 14 0.10
27 13 0.09
28 7 0.05
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.30
Consensus pattern (24 bp):
TAAAAATAATAAAAAAAAATTATA
Found at i:2157 original size:30 final size:30
Alignment explanation
Indices: 2121--2496 Score: 109
Period size: 28 Copynumber: 12.8 Consensus size: 30
2111 TAAGTATATA
* *
2121 AAAAATAAAAAATAAATATATAAAAAAAAT
1 AAAAATAAAAAATAAATATATAATAAAATT
* * *
2151 AAAAATAAATAAAAAAATA-ATAATTAATTT
1 AAAAATAAA-AAATAAATATATAATAAAATT
* *
2181 AAATAT-AAAATTAAATATAT-ATAAAATT
1 AAAAATAAAAAATAAATATATAATAAAATT
* **
2209 ATAAAT-AAAAAT--ATA-A-AATAATTTT
1 AAAAATAAAAAATAAATATATAATAAAATT
* ** * *
2234 ATAAATTAAATTATAAAAAAATAATAAAA--
1 A-AAAATAAAAAATAAATATATAATAAAATT
* * **
2263 AAAAATAAAAAATTAAT-GA-AATATTATT
1 AAAAATAAAAAATAAATATATAATAAAATT
* * *
2291 AAATAATAATATATAATATATAATAATTAAATAT
1 AAA-AATAAAAAATAA-ATAT-ATAATAAAAT-T
* * *
2325 AAAAGTTATAATAAATTATTAATATAATAAAA-T
1 AAAA---ATAAAAAATAAAT-ATATAATAAAATT
* * *
2358 AAATATATAAATTAAA-ATA-ATATAAAA--
1 AAAAATAAAAAATAAATATATA-ATAAAATT
*
2385 AAATAATAATTAAATAAATA-ATTAAT-AAATT
1 AAA-AATAA-AAAATAAATATA-TAATAAAATT
*
2416 AAATATAAAAAAT-AATATA-AAT-AAA-T
1 AAAAATAAAAAATAAATATATAATAAAATT
* *
2442 AAATAAT-ATAAATAATATATATAATTAAAAAT
1 AAA-AATAAAAAATAA-ATATATAA-TAAAATT
* *
2474 AATAATAAATAAT-AATATTATAA
1 AAAAATAAAAAATAAATA-TATAA
2497 ATATTATATT
Statistics
Matches: 249, Mismatches: 58, Indels: 77
0.65 0.15 0.20
Matches are distributed among these distances:
25 8 0.03
26 20 0.08
27 18 0.07
28 57 0.23
29 33 0.13
30 42 0.17
31 29 0.12
32 8 0.03
33 10 0.04
34 4 0.02
35 9 0.04
36 11 0.04
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (30 bp):
AAAAATAAAAAATAAATATATAATAAAATT
Found at i:2573 original size:23 final size:23
Alignment explanation
Indices: 2542--2591 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
2532 TATTATATTA
*
2542 AATTAATA-AAAAAAAAATTAA-
1 AATTAATATAAAAAAAAAATAAT
**
2563 AATTAATATAAATTAAAAATAAT
1 AATTAATATAAAAAAAAAATAAT
2586 AATTAA
1 AATTAA
2592 AAATTATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 8 0.33
22 10 0.42
23 6 0.25
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (23 bp):
AATTAATATAAAAAAAAAATAAT
Found at i:2577 original size:16 final size:15
Alignment explanation
Indices: 2147--2586 Score: 95
Period size: 15 Copynumber: 29.9 Consensus size: 15
2137 TATATAAAAA
*
2147 AAATAAAAATAA-AT
1 AAATTAAAATAATAT
2161 AAA--AAAATAATAAT
1 AAATTAAAATAAT-AT
* *
2175 TAATTTAAAT-ATA-
1 AAATTAAAATAATAT
2188 AAATT-AAATATATAT
1 AAATTAAAATA-ATAT
2203 AAAATTATAAAT-A-A-
1 -AAATTA-AAATAATAT
2217 AAATATAAAATAATTTTAT
1 AAAT-TAAAATAA---TAT
2236 AAATT-AAAT--TAT
1 AAATTAAAATAATAT
2248 AAA--AAAATAATA-
1 AAATTAAAATAATAT
*
2260 AAA-AAAAATAA-A-
1 AAATTAAAATAATAT
*
2272 AAATTAATGA-AATAT
1 AAATTAA-AATAATAT
*
2287 -TATTAAATAATAATAT
1 AAATT-AA-AATAATAT
*
2303 ATAATATATAATAAT-T
1 A-AAT-TAAAATAATAT
*
2319 AAATATAAAAGTTATAAT
1 AAAT-TAAAA-TAAT-AT
2337 AAATTATTAATATAATA-
1 AAATTA--AA-ATAATAT
2354 AAA-T-AAAT-ATAT
1 AAATTAAAATAATAT
2366 AAATTAAAATAATAT
1 AAATTAAAATAATAT
2381 AAA--AAAATAATAATT
1 AAATTAAAATAAT-A-T
2396 AAA-T-AAATAATTAAT
1 AAATTAAAATAA-T-AT
2411 AAATTAAATATAA-A-
1 AAATTAAA-ATAATAT
*
2425 AAA-TAATATAA-AT
1 AAATTAAAATAATAT
2438 AAA-T-AAATAATAT
1 AAATTAAAATAATAT
*
2451 AAA-TAATAT-ATAT
1 AAATTAAAATAATAT
2464 -AATTAAAAATAATAAT
1 AAATT-AAAATAAT-AT
*
2480 AAA-TAATAATATTAT
1 AAATTAA-AATAATAT
** *
2495 AAA-TATTATATTAT
1 AAATTAAAATAATAT
*
2509 ATA-TAAATATTAA-A-
1 AAATTAAA-A-TAATAT
*
2523 AAAATAAAATATTATATT
1 AAATTAAAATA--ATA-T
* *
2541 AAATTAATAA-AAAAA
1 AAATTAA-AATAATAT
2556 AAATTAAAATTAATAT
1 AAATTAAAA-TAATAT
2572 AAATTAAAAATAATA
1 AAATT-AAAATAATA
2587 ATTAAAAATT
Statistics
Matches: 329, Mismatches: 29, Indels: 134
0.67 0.06 0.27
Matches are distributed among these distances:
11 7 0.02
12 41 0.12
13 56 0.17
14 50 0.15
15 62 0.19
16 51 0.16
17 23 0.07
18 26 0.08
19 12 0.04
20 1 0.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
AAATTAAAATAATAT
Found at i:2594 original size:36 final size:31
Alignment explanation
Indices: 2342--2644 Score: 100
Period size: 31 Copynumber: 9.5 Consensus size: 31
2332 ATAATAAATT
* *
2342 ATTAATATAAT-AAAATAAATATATAAATTAA
1 ATTAATATAATAAAAAAAAAT-TAAAAATTAA
* *
2373 AATAATATAA-AAAAATAATAATTAAATAAAT-A
1 ATTAATATAATAAAAA-AA-AATTAAA-AATTAA
* *
2405 ATTAATA-AATTAAATATAAAAAATAATATAAATAA
1 ATTAATATAA-TAAA-A-AAAAATTAA-A-AATTAA
* * *
2440 A-TAA-ATAAT-ATAAATAATATATATAATTAA
1 ATTAATATAATAAAAAAAAAT-TA-AAAATTAA
* *
2470 A--AATAATAATAAATAATAATATTATAAATATTAT
1 ATTAAT-ATAATAAA-AA-AAAATTA-AAA-ATTAA
* *
2504 ATTATATATAAATATTAAAAAAA-TAAAATATTAT
1 ATTA-ATAT-AATA-AAAAAAAATTAAAA-ATTAA
2538 ATTAA-ATTAATAAAAAAAAAATT-AAAATTAA
1 ATTAATA-TAAT-AAAAAAAAATTAAAAATTAA
* * *
2569 TATAAAT-TAA-AAATAATAATTAAAAATT--
1 -ATTAATATAATAAAAAAAAATTAAAAATTAA
*
2597 ATTAATATAATAAAAAAAAATTAAATATTAA
1 ATTAATATAATAAAAAAAAATTAAAAATTAA
* *
2628 TAATAAT-TAATATAAAA
1 -ATTAATATAATAAAAAA
2645 TATATATTAT
Statistics
Matches: 208, Mismatches: 29, Indels: 70
0.68 0.09 0.23
Matches are distributed among these distances:
27 5 0.02
28 3 0.01
29 26 0.12
30 16 0.08
31 39 0.19
32 37 0.18
33 27 0.13
34 35 0.17
35 5 0.02
36 6 0.03
37 8 0.04
38 1 0.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (31 bp):
ATTAATATAATAAAAAAAAATTAAAAATTAA
Found at i:2769 original size:45 final size:42
Alignment explanation
Indices: 2687--2924 Score: 151
Period size: 45 Copynumber: 5.2 Consensus size: 42
2677 ATTATTTATT
* * *
2687 AATAATAAATATATAATATAATTAAATAAATTAAATAATTAAATAA
1 AATAAAAAATA-ATAA-ATAAATAAAAAAATTAAA-AA-TAAATAA
*
2733 AATAAAAATATAATAAATAAATAAAAAACATTAATAATATAATAAA
1 AATAAAAA-ATAATAAATAAATAAAAAA-ATTAAAAATA-AAT-AA
* *
2779 ATATAATAAAATAATAAAAATAATATAATAATAATATAAAAAT-AATATT
1 A-ATAA-AAAATAAT--AAATAA-ATAA-AAAAAT-TAAAAATAAATA-A
2828 AATAAAAAATAATAAATAAATAAATAAATTATTAAAAATAAA-AA
1 AATAAAAAATAATAAATAAATAAA-AAA--ATTAAAAATAAATAA
* *
2872 TAATAAAAAATAAATTAATATAATAAAATATTATTATAAAA-AAA-AA
1 -AATAAAAAAT-AATAAATA-AATAAAA-A-AATTA-AAAATAAATAA
2918 AATAAAA
1 AATAAAA
2925 TTATATAATA
Statistics
Matches: 159, Mismatches: 11, Indels: 45
0.74 0.05 0.21
Matches are distributed among these distances:
43 1 0.01
44 8 0.05
45 46 0.29
46 40 0.25
47 31 0.19
48 8 0.05
49 10 0.06
50 6 0.04
51 9 0.06
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.29
Consensus pattern (42 bp):
AATAAAAAATAATAAATAAATAAAAAAATTAAAAATAAATAA
Found at i:3095 original size:22 final size:23
Alignment explanation
Indices: 3054--3120 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 23
3044 ATTATTAATT
* * *
3054 TAAAAATATATATAATAAT-ATA
1 TAAAAATATATAAAAAAATAAAA
* *
3076 TTAAATTATATAAAAAAATAAAA
1 TAAAAATATATAAAAAAATAAAA
3099 TAAAAATATAT-AAAAAATAAAA
1 TAAAAATATATAAAAAAATAAAA
3121 ATATATAATT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
22 26 0.70
23 11 0.30
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (23 bp):
TAAAAATATATAAAAAAATAAAA
Found at i:3130 original size:77 final size:79
Alignment explanation
Indices: 2997--3178 Score: 182
Period size: 77 Copynumber: 2.3 Consensus size: 79
2987 TATTTATAAA
* * * *
2997 AATATAAT-TAATAAT-TATATAATAAAAATAAATTAAAATAAATTAATATTATTAATTTAAAAA
1 AATATAATATAATAATAAATAAAATAAAAATAAATAAAAATAAA-TAATATTATTAATTCAAAAA
*
3060 TATATATAATAATATATT
65 TAT-TAAAATAA-ATA-T
* * *
3078 AA-ATTATATAA-AA-AAATAAAATAAAAATATATAAAAAATAAA-AATA-TA-TAATTCAAAAT
1 AATATAATATAATAATAAATAAAATAAAAATAAAT-AAAAATAAATAATATTATTAATTCAAAAA
3137 TATTAAAATAAATAT
65 TATTAAAATAAATAT
*
3152 AATATAATATAATAATAAATAATATAA
1 AATATAATATAATAATAAATAAAATAA
3179 TTAAAATTAA
Statistics
Matches: 85, Mismatches: 10, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
74 3 0.04
75 11 0.13
76 9 0.11
77 22 0.26
78 2 0.02
79 4 0.05
80 21 0.25
81 13 0.15
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (79 bp):
AATATAATATAATAATAAATAAAATAAAAATAAATAAAAATAAATAATATTATTAATTCAAAAAT
ATTAAAATAAATAT
Found at i:3155 original size:5 final size:5
Alignment explanation
Indices: 3143--3179 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
3133 AAATTATTAA
3143 AATA- AATAT AATAT AATAT AATAAT AA-AT AATAT AAT
1 AATAT AATAT AATAT AATAT AAT-AT AATAT AATAT AAT
3180 TAAAATTAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
4 8 0.27
5 18 0.60
6 4 0.13
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (5 bp):
AATAT
Found at i:3317 original size:30 final size:28
Alignment explanation
Indices: 3190--3374 Score: 105
Period size: 30 Copynumber: 6.5 Consensus size: 28
3180 TAAAATTAAG
*
3190 AATAAAAATTAAAATAAAAAAAATATATT
1 AATAAAAATTAAAA-AAAAATAATATATT
* * *
3219 ATATAATAATTTTAATTAAAATATAATATA-T
1 A-ATAA-AA-ATTAA-AAAAAAATAATATATT
* * *
3250 AATTATAAA--AATAAAAATTAATA-ATT
1 AA-TAAAAATTAAAAAAAAATAATATATT
*
3276 AATAAATATTAAAAAAAAATAATATATT
1 AATAAAAATTAAAAAAAAATAATATATT
*
3304 ATATTAAAAATTAAAAAAAAA-AAT-TA-A
1 A-A-TAAAAATTAAAAAAAAATAATATATT
* * * *
3331 AATTAAAATAAAAAAAAAAAAAATATAATA
1 AATAAAAAT-TAAAAAAAAATAATAT-ATT
3361 AATATAAAATTAAA
1 AATA-AAAATTAAA
3375 TATAATTTAA
Statistics
Matches: 121, Mismatches: 18, Indels: 33
0.70 0.10 0.19
Matches are distributed among these distances:
25 11 0.09
26 23 0.19
27 18 0.15
28 7 0.06
29 6 0.05
30 30 0.25
31 11 0.09
32 14 0.12
33 1 0.01
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (28 bp):
AATAAAAATTAAAAAAAAATAATATATT
Found at i:3352 original size:26 final size:26
Alignment explanation
Indices: 3316--3369 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
3306 ATTAAAAATT
*
3316 AAAAAAAAAAATTAAAATTAAA-ATAA
1 AAAAAAAAAAAATAAAA-TAAATATAA
*
3342 AAAAAAAAAAAATATAATAAATATAA
1 AAAAAAAAAAAATAAAATAAATATAA
3368 AA
1 AA
3370 TTAAATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (26 bp):
AAAAAAAAAAAATAAAATAAATATAA
Found at i:3496 original size:56 final size:55
Alignment explanation
Indices: 3236--3513 Score: 150
Period size: 54 Copynumber: 5.0 Consensus size: 55
3226 AATTTTAATT
* * *
3236 AAAATATAATATATAATT-ATAAAAATAAAA-ATTAATAATTAATAAATATTAAAAA
1 AAAATAAAATAT-TAATTAATAAAAATAAAATATTAA-AATTAATAATTAATAAAAA
* * **
3291 AAAATAATATATTATATT-A-AAAATTAAAA-AAAAAAATTAA-AATTAAAATAAAAA
1 AAAATAAAATATTA-ATTAATAAAAATAAAATATTAAAATTAATAATT--AATAAAAA
* * * **
3345 AAAAAAAAATA-TAATAAATATAAAATTAAATATAATTTAAAA--AATAATTATATATATC
1 AAAATAAAATATTAATTAATA-AAAA-TAAA-AT-A-TTAAAATTAATAATTA-ATAAAAA
* * * *
3403 AAAAT-AATTATAAATT-TTAAAAAATAAAATAAATAAAATTAAT-ATTAATAAAAA
1 AAAATAAAATATTAATTAAT-AAAAATAAAAT-ATTAAAATTAATAATTAATAAAAA
* *
3457 AAAATAAAATATTAATTAATATAATATAAAATTATTAAAAAATAA-AATTATATAAAA
1 AAAATAAAATATTAATTAATA-AAAATAAAA-TATT-AAAATTAATAATTA-ATAAAA
3514 TAATCATTAT
Statistics
Matches: 168, Mismatches: 31, Indels: 45
0.69 0.13 0.18
Matches are distributed among these distances:
52 5 0.03
53 9 0.05
54 45 0.27
55 35 0.21
56 22 0.13
57 23 0.14
58 20 0.12
59 5 0.03
60 4 0.02
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (55 bp):
AAAATAAAATATTAATTAATAAAAATAAAATATTAAAATTAATAATTAATAAAAA
Found at i:3579 original size:56 final size:56
Alignment explanation
Indices: 3426--5970 Score: 326
Period size: 53 Copynumber: 46.3 Consensus size: 56
3416 ATTTTAAAAA
* * * * *
3426 ATAAAATAAATAAAATTAATATTAATAAA-AAAAAATAAAATAT-TAATTAATATAAT
1 ATAAAAT-AATAAAAATAATA-TAATAAATAAAATATATATTATATAATAAATATAAT
* * * * *
3482 ATAAAATTATTAAAA-AATAAAATTATATAAAATA-ATCATTATATATATAAATATATT
1 ATAAAATAATAAAAATAATATAA-TAAATAAAATATAT-ATTATATA-ATAAATATAAT
* *
3539 AT-AAATAATAAAAATAATATAATAAATAAAATATATATTATA-AA-AAAAATAAA
1 ATAAAATAATAAAAATAATATAATAAATAAAATATATATTATATAATAAATATAAT
** * * *
3592 ATAAAA-AAT-AAAATAATAT-AT-AAT-TTATA-ATTTTA-ATAAAAAAAATAAT
1 ATAAAATAATAAAAATAATATAATAAATAAAATATATATTATATAATAAATATAAT
** * * * * *
3641 ATATATTTAA-ATAAATAATAT--CAAATAAATTTTA-AATATA-AATAAATATAAT
1 ATA-AAATAATAAAAATAATATAATAAATAAAATATATATTATATAATAAATATAAT
** *
3693 AATAATAAATATATAAATTTAAT-TATATAAA-ATAATAT-TATTATATAAAAAATAAATATAAT
1 -AT-A-AAATA-ATAAAAATAATATA-ATAAATAAAATATATATTATAT----AATAAATATAAT
* * * * * * * *
3755 ATAAATATATTAAAATATATATAATAATAAAAAAAAAAAAAAAATAAATTACTAAAT-T-AT
1 ATAAA-ATAATAAAA-ATA-AT-ATAAT-AAATAAAATATATATTATA-TAATAAATATAAT
* *
3815 ATATAAA-AATAAACAAGTAATAATTATAAATAAAAATATAAAAAAATTATATAAATAAA-A-AA
1 ATA-AAATAATAAA-AA-TAAT-ATAATAAAT-AAAATAT----ATATTATAT-AATAAATATAA
3877 T
56 T
* * * ** **
3878 ATAAAAAAATAAATAATAATGTAAT-AATTAGTTATATAAAATATAA-AAATA-ATAT
1 ATAAAATAATAAA-AATAATATAATAAATAAAATATATATTATATAATAAATATA-AT
* * * * * * *
3933 TTAAAAATAAT-AAATTAA-ATAATAAAAATAAATATAATAAATAAATTAAAAAATTTAAT
1 AT-AAAATAATAAAAATAATATAATAAATA-AAATAT-AT-ATTATA-TAATAAATATAAT
* * * * * *
3992 ATAAAATAAAAATAAATAA-A-ATTAAATATAAATAAATATAAAAT-ATTAATATAAT
1 ATAAAATAATAA-AAATAATATAATAAATA-AAATATATATTATATAATAAATATAAT
* * * * *
4047 -TAATTATAATAAAATATTAATTTAATATATAAAATTAATTTAATATTATTTAA-AAATATAAA
1 ATAA-AATAATAAAA-A-TAATATAATAAATAAAA-T-A--T-ATATTATATAATAAATATAAT
* ** * * *
4109 ATAAAAAAATATAAAATAA-AT-ATATTTTAAAATATA-A-AATAAAATATATATAAT
1 ATAAAATAATA-AAAATAATATAATA-AATAAAATATATATTATATAATAAATATAAT
* * ** ** * *
4163 ATAAAAAAATAAAAAT--TTTAA-AAATTTAATATATAGAATATTATAAA-AAAAT
1 ATAAAATAATAAAAATAATATAATAAATAAAATATATATTATATAATAAATATAAT
* * *
4215 ATAAAA-AAT--AAATAA-A-AATATA-AAAATATATATTAAAATATTAAATA-AAT
1 ATAAAATAATAAAAATAATATAATAAATAAAATATATATT-ATATAATAAATATAAT
* * * *
4265 AT-ATATAAATAAAAATAATAAATAATAATATAATTATAAATATAATA-AATAAATAT-AT
1 ATAAAAT-AATAAAAATAAT--ATAATAA-ATAA-AATATATATTATATAATAAATATAAT
* *
4323 AATAAATTATAA-ACAAAA-AAT-TTATATATAAAA-ATA-A-TATA-AATAAATATATAT
1 -ATAAA--ATAATA-AAAATAATATAATAAATAAAATATATATTATATAATAAATATA-AT
* * * * * *
4377 AAAAAAAAATTAAAAAATAATTATATAAAAATATAAA-A-AAATAATATAATAAATAAAAT
1 ATAAAATAA-T-AAAAATAA-TATA-ATAAATA-AAATATATATTATATAATAAATATAAT
* * * * * * *
4436 -TAAAATCTTATAAAAAAAAAAAAAT-AATAATATATTAATATAATAATAATAAATTAAATAT
1 ATAAAA--TAATAAAAATAATATAATAAATAAAATA-T-ATATTAT-ATAATAAA-TATA-AT
* * * *
4497 AATAAAAAAATAATATAATAAAAATATTAATATAAAAT-TATATTAT-TAATTAATATAAT
1 -ATAAAATAATAA-A-AAT-AATATAATAA-ATAAAATATATATTATATAATAAATATAAT
* * * * * * *
4556 -TAAATTATATAAAAA-AA-ATAATTAAA-AATATAAATATAATA-AAAAAAAATATT
1 ATAAAATA-ATAAAAATAATATAA-TAAATAAAATATATATTATATAATAAATATAAT
* * * * * * *
4609 A-AAAATATTATATATTAATAT--T-ATTATAATATAAATTA-ATTATAAATA-AAT
1 ATAAAATAATA-AAAATAATATAATAAATAAAATATATATTATATAATAAATATAAT
* * * * *
4660 ATATAATATTAAAAAT-ATATAAATTAAATAATATA-ATA-TA-AAAATACATA-AAT
1 ATAAAATAATAAAAATAATAT-AA-TAAATAAAATATATATTATATAATAAATATAAT
* * * * * *
4713 AAAAAATTAAAAGAAAAATAAAATTATTATAATAAAA-AAATATTA-ATAAT--ATTTAA-
1 ATAAAA-T--AATAAAAATAATA-TAATA-AATAAAATATATATTATATAATAAATATAAT
* * *
4769 A-AAAATAATATAAAA-AATTTAATAAATAAAAATATATATTAAATTAAAAAAATTAAATATAT
1 ATAAAATAATA-AAAATAATATAATAAAT-AAAATATATATTATA-T-AATAAA-T--ATA-AT
* * ** *
4831 ATATAATAATTAAAATAATA-AA-AAATAAAA-ATTAATAAAAGATAAT-AATA-AAT
1 ATAAAATAATAAAAATAATATAATAAATAAAATA-T-ATATTATATAATAAATATAAT
* * *
4884 -TAAAAAAATTATATAATAATATAA-ATATAAAA-ATATATTATATAAT-AATAATAAT
1 ATAAAATAA-TA-AAAATAATATAATAAATAAAATATATATTATATAATAAAT-ATAAT
* * * * * * * * *
4939 -T-AAATTATATAAATAA-ATATTATATATAATATA-ATAAAATATATATATTATAAA
1 ATAAAATAATAAAAATAATATAATAAATAAAATATATATTATATA-ATA-AATATAAT
* * *
4993 ATATAAATATTAAATATAAT-TAATAACAT-ATATATATTATTATA-AATAAATA-AAT
1 ATA-AAATAATAAAAATAATATAATAA-ATAAAATATA-TATTATATAATAAATATAAT
** * * * *
5048 ATTTAATAA-ATAATATTATAAAATAAAT-AAATATATA-TAAATAATAAATATAA-
1 ATAAAATAATA-AAAATAATATAATAAATAAAATATATATTATATAATAAATATAAT
* *
5101 A-AATAATAATAAAAA-AATATAAT-AATAATAA-ATAAAGTTA-A-AA-AATTATAA-
1 ATAA-AATAATAAAAATAATATAATAAATAA-AATATATA-TTATATAATAAATATAAT
*
5152 ATAAAA-AATAAA--T-ATATAATAAATAAAATA-A-A-TATATAAAAAATCATAAT
1 ATAAAATAATAAAAATAATATAATAAATAAAATATATATTATATAATAAAT-ATAAT
* * * * * * *
5202 AAAAAATAA-ATAATTAATAT-ATAAA-AAAA-ATA-ATAAAATAA-AAATAAAAA
1 ATAAAATAATAAAAATAATATAATAAATAAAATATATATTATATAATAAATATAAT
* * **
5252 AAAAAATTAAAATAAAATAATAATTAATTAAATATTAAA-ATATAAAATAT-ATAAATA-AAT
1 ATAAAA-TAATA-AAAATAAT-A-TAA-TAAATA--AAATATATATTATATAATAAATATAAT
* ** ** * * *
5312 A-AAAATAAT-TATTTAATTATAATATAA-AAAATATA-AAAATAT-ATATATTTTATT
1 ATAAAATAATAAAAATAA-TATAATA-AATAAAATATATATTATATAATA-AATATAAT
5366 ATAAAAATAA-AATAAATATATATAA-AAATAAATATAATATATTA-A-AATAAA-ATAAT
1 AT-AAAATAATAA-AAATA-ATATAATAAATAAA-AT-ATATATTATATAATAAATATAAT
* * * *
5422 AATAAAAATATTATAAAATAAT-TAAT-AATATAAATA-ATA-AATATCTATAAA-ATAAA
1 -AT-AAAATAATA-AAAATAATATAATAAATA-AAATATATATTATAT-AATAAATATAAT
*
5478 ATAAAA-AATTAAAAATAAT-TTATAAA-AAAA-ATA-A--A-ATAATAAAT-TAAT
1 ATAAAATAA-TAAAAATAATATAATAAATAAAATATATATTATATAATAAATATAAT
** * * * * * *
5526 AT--AATAATAAATTTAACATAAT-AATAAAAAATTATATATAAATTACAAATAAAAT
1 ATAAAATAATAAAAATAATATAATAAATAAAATA-TATAT-TATATAATAAATATAAT
* * *
5581 ATAAATATAATAAAAATAA-ATAAT--AT-AAA-A-ATATTA-AAAAAAAATTTAATT
1 ATAAA-ATAATAAAAATAATATAATAAATAAAATATATATTATATAATAAATATAA-T
* * * * *
5632 ATAAATTATATTAAATAATAAT-TTAGAAATAATATTATATATTATATATATAAAAAATAAT
1 ATAAA--ATAATAAA-AATAATATAATAAATAA-AATATATATTATATA-AT-AAATATAAT
* * * * *
5693 -TAAAATAAATAAATATAATTTAAT-ATTAAAATATA-AAT-TATAATAAATATATAA
1 ATAAAAT-AATAAAAATAATATAATAAATAAAATATATATTATATAATAAATATA-AT
* * * * * ** *
5747 ATAAATAGAATAAAATTATTATAATAAAAATAAATAAATAAAATTATAATAAAATAAAAT
1 ATAAA-ATAATAAAAATAATATAATAAATA-AAATATATATTA-TATAAT-AAATATAAT
* *
5807 AAATAAATAATATAAATAA-ATAAT-AA-AAAATA-A-A-T-TATAA-AAA-A-AAT
1 ATA-AAATAATAAAAATAATATAATAAATAAAATATATATTATATAATAAATATAAT
* * * * *
5854 ATAAAA-AATAAATATAATAT--TATATAAAAAATA-ATTA-A-ATTAAA-AAAAT
1 ATAAAATAATAAAAATAATATAATAAATAAAATATATATTATATAATAAATATAAT
* *
5903 -TAAAAT-AT--AAA-AATAT-ATAAATAATAT-TATATT-TAATAATAAATAT-TT
1 ATAAAATAATAAAAATAATATAATAAATAAAATATATATTAT-ATAATAAATATAAT
5951 ATAATAAATAATAAAAATAA
1 AT-A-AAATAATAAAAATAA
5971 AGTTAATTAT
Statistics
Matches: 1807, Mismatches: 365, Indels: 635
0.64 0.13 0.23
Matches are distributed among these distances:
44 1 0.00
45 19 0.01
46 34 0.02
47 22 0.01
48 51 0.03
49 52 0.03
50 59 0.03
51 99 0.05
52 173 0.10
53 191 0.11
54 150 0.08
55 141 0.08
56 131 0.07
57 148 0.08
58 120 0.07
59 107 0.06
60 103 0.06
61 61 0.03
62 63 0.03
63 59 0.03
64 11 0.01
65 5 0.00
66 7 0.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.33
Consensus pattern (56 bp):
ATAAAATAATAAAAATAATATAATAAATAAAATATATATTATATAATAAATATAAT
Found at i:3608 original size:127 final size:126
Alignment explanation
Indices: 3329--3621 Score: 319
Period size: 127 Copynumber: 2.3 Consensus size: 126
3319 AAAAAAAATT
* * * * * *
3329 AAAATTAAAATAAAAAAAAAAAAAATATAATAAATATAAAATTAAATATAATTTAAAAAATAATT
1 AAAAATAAAATAAAAAATAAAATAATATAA-AATTATAAAAATAAATATAATATAAAAAATAATT
* *
3394 ATATATATCAAAATAATTATAAATTTTAAAAAATAAAATAAATAAAATTAATATTAATAAAA
65 ATATATATCAAAATAATTATAAATATAAAAAAATAAAATAAATAAAATTAATATTAATAAAA
** * * * *
3456 AAAAATAAAATATTAATTAATATAATATAAAATTATTAAAAAATAAA-ATTATATAAAATAATCA
1 AAAAATAAAATAAAAAATAAAATAATATAAAATTA-T-AAAAATAAATATAATATAAAA-AATAA
*
3520 TTATATATAT--AAATATATTATAAATAATAAAAATAATATAATAAATAAAA-TATATATT-AT-
63 TTATATATATCAAAATA-ATTATAAAT-ATAAAAA-AATAAAATAAATAAAATTA-ATATTAATA
3580 AAA
124 AAA
*
3583 AAAAATAAAATAAAAAATAAAATAATATATAATTTATAA
1 AAAAATAAAATAAAAAATAAAATAATATA-AAATTATAA
3622 TTTTAATAAA
Statistics
Matches: 138, Mismatches: 20, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
126 11 0.08
127 71 0.51
128 36 0.26
129 20 0.14
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (126 bp):
AAAAATAAAATAAAAAATAAAATAATATAAAATTATAAAAATAAATATAATATAAAAAATAATTA
TATATATCAAAATAATTATAAATATAAAAAAATAAAATAAATAAAATTAATATTAATAAAA
Found at i:3688 original size:87 final size:92
Alignment explanation
Indices: 3474--3778 Score: 224
Period size: 87 Copynumber: 3.3 Consensus size: 92
3464 AATATTAATT
* * * * *
3474 AATATAATATAAA-ATTATTAAAAAATAAAATTATATAAAATAATCATTATATATATAAATAT-A
1 AATATAATATAAATA-TATT-AAATAT-AAA-TAAATAAAATAAT-AATAAATATATAAATTTAA
* * * * *
3537 TTATAAATAATAA-A-AATAATATAATAAATAA
61 TTAAAAAAAATAATATTATTATATAAAAAAT-A
* * * * *
3568 AATATATATTATAAAAAAAATAAA-ATAAA-AAATAAAATAAT-ATATAATTTATAATTTTAA-T
1 AATATA-A-TATAAATATATTAAATATAAATAAATAAAATAATAATA-AATATATAAATTTAATT
*
3629 AAAAAAAATAATATATATT-TA-AATAAAT-
63 AAAAAAAATAATAT-TATTATATAAAAAATA
* *
3657 AATATCAA-ATAAAT-T-TTAAATATAAATAAATATAATAATAATAAATATATAAATTTAATTAT
1 AATAT-AATATAAATATATTAAATATAAATAAATAAAATAATAATAAATATATAAATTTAATTAA
*
3719 ATAAAATAATATTATTATATAAAAAATA
65 AAAAAATAATATTATTATATAAAAAATA
*
3747 AATATAATATAAATATATTAAAATATATATAA
1 AATATAATATAAATATATT-AAATATAAATAA
3779 TAATAAAAAA
Statistics
Matches: 169, Mismatches: 22, Indels: 41
0.73 0.09 0.18
Matches are distributed among these distances:
85 4 0.02
86 5 0.03
87 33 0.20
88 18 0.11
89 16 0.09
90 31 0.18
91 21 0.12
92 4 0.02
93 16 0.09
94 8 0.05
95 4 0.02
96 8 0.05
97 1 0.01
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (92 bp):
AATATAATATAAATATATTAAATATAAATAAATAAAATAATAATAAATATATAAATTTAATTAAA
AAAAATAATATTATTATATAAAAAATA
Found at i:3698 original size:58 final size:61
Alignment explanation
Indices: 3635--3786 Score: 161
Period size: 62 Copynumber: 2.5 Consensus size: 61
3625 TAATAAAAAA
* *
3635 AATAATATATATTTAAATAAATAATATCAAATAA-ATT-TTAAAT-ATAAATAAATATAAT
1 AATAATATATATTTAAATAAATAATATAAAATAATATTATTAAATAAAAAATAAATATAAT
* * * * *
3693 AATAATAAATATATAAATTTAATTATATAAAATAATATTATTATATAAAAAATAAATATAAT
1 AATAATATATATTTAAA-TAAATAATATAAAATAATATTATTAAATAAAAAATAAATATAAT
*
3755 -ATAA-ATATATTAAAATATATATAATAATAAAA
1 AATAATATATATTTAAATA-A-ATAAT-ATAAAA
3787 AAAAAAAAAA
Statistics
Matches: 75, Mismatches: 12, Indels: 10
0.77 0.12 0.10
Matches are distributed among these distances:
58 15 0.20
59 15 0.20
60 12 0.16
61 13 0.17
62 20 0.27
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.38
Consensus pattern (61 bp):
AATAATATATATTTAAATAAATAATATAAAATAATATTATTAAATAAAAAATAAATATAAT
Found at i:4054 original size:23 final size:22
Alignment explanation
Indices: 3953--5600 Score: 110
Period size: 21 Copynumber: 74.8 Consensus size: 22
3943 TAAATTAAAT
* *
3953 AATAAAAATAAATATAATAAATA
1 AATATAAATAAATATAA-AATTA
* * *
3976 AAT-TAAA-AAATTTAATATAA
1 AATATAAATAAATATAAAATTA
*
3996 AATAAAAAT-AA-ATAAAATTA
1 AATATAAATAAATATAAAATTA
*
4016 AATATAAATAAATATAAAATATT
1 AATATAAATAAATATAAAAT-TA
* * *
4039 AATAT-AATTAAT-TATAATAA
1 AATATAAATAAATATAAAATTA
*
4059 AATATTAATTTAATATATAAAATT-
1 AATA-TAA-ATAA-ATATAAAATTA
* * *
4083 AAT-TTAATATTATTTAAAAATATA
1 AATATAAATA-AATAT-AAAAT-TA
*
4107 AA-ATAAAAAAATATAAAA-TA
1 AATATAAATAAATATAAAATTA
** *
4127 AATATATTTTAAAATATAAAATAA
1 AATATA-AAT-AAATATAAAATTA
*
4151 AATATATAT-AATATAAAA--A
1 AATATAAATAAATATAAAATTA
* **
4170 AATAAAAAT-TTTA-AAAATTTA
1 AATATAAATAAATATAAAA-TTA
*
4191 ATATATAGAAT-ATTATAAAA--A
1 A-ATATA-AATAAATATAAAATTA
4212 AATATAAA-AAATA-AATAA--A
1 AATATAAATAAATATAA-AATTA
*
4231 AATAT-AA-AAATAT-ATATTAA
1 AATATAAATAAATATAAAATT-A
*
4251 AATATTAAATAAATAT-ATA-TA
1 AATA-TAAATAAATATAAAATTA
*
4272 AATAAAAAT-AATA-AATAA-T-
1 AATATAAATAAATATAA-AATTA
*
4291 AATATAATTATAAATATAATAAATA
1 AATATAA--ATAAATATAA-AATTA
**
4316 AATATATAATAAATTATAAACAAAA
1 AATATA-AATAAA-TATAAA-ATTA
* * *
4341 AATTTATATATAAAAATAATA-T-
1 AA--TATAAATAAATATAAAATTA
* **
4363 AA-ATAAATATATATAAAAAAA
1 AATATAAATAAATATAAAATTA
* * *
4384 AAT-TAAA-AAATAATTATATAAA
1 AATATAAATAAAT-ATAAAAT-TA
* *
4406 AATATAAAAAAATAATATAA-TA
1 AATATAAATAAAT-ATAAAATTA
***
4428 AATA-AAATTAAA-ATCTTA-TA
1 AATATAAA-TAAATATAAAATTA
* * *
4448 AAAAAAAAAAAATAATAATATATT-
1 AATATAAATAAAT-ATAA-A-ATTA
4472 AATAT-AAT-AATA-ATAAATTA
1 AATATAAATAAATATA-AAATTA
*
4492 AATAT-AATAAA-A-AAATAATA
1 AATATAAATAAATATAAA-ATTA
*
4512 TAATAAAAATATTAATATAAAATTA
1 -AATATAAATA--AATATAAAATTA
* * *
4537 TATTATTAATTAATAT--AATTA
1 -AATATAAATAAATATAAAATTA
* * *
4558 AAT-TATATAAAAAAAATAATTAAA
1 AATATAAATAAATATAA-AATT--A
*
4582 AATATAAATATAATA-AAAA-AA
1 AATATAAATA-AATATAAAATTA
* *
4603 AATATTAA-AAATATTATATATT-
1 AATATAAATAAATA-TA-AAATTA
* *
4625 AATATTATTATAATAT-AAATTA
1 AATATAAATA-AATATAAAATTA
*
4647 ATTATAAATAAATATATAATATTA
1 AATATAAATAAATATA-AA-ATTA
* * *
4671 AAAATATATAAAT-TAAATAATA
1 AATATAAATAAATATAAA-ATTA
* *
4693 TAATAT-AA-AAATACATAAATAA
1 -AATATAAATAAATATA-AAATTA
* * *
4715 AAAATTAAAAGAAAAATAAAATTA
1 AATA-T-AAATAAATATAAAATTA
* *
4739 TTATAATAAAAAAATATTAATAATATTTA
1 -AAT-ATAAATAAATA-T-A-AA-A-TTA
*
4768 AA-A-AAATAATATAAAAAATT-
1 AATATAAATAA-ATATAAAATTA
* * *
4788 TA-ATAAATAAAAATATATATTA
1 AATATAAATAAATATA-AAATTA
*
4810 AAT-TAAAAAAAT-TAAATATATA
1 AATATAAATAAATATAAA-AT-TA
* * *
4832 TATAATAATTAAA-ATAATAA-AA
1 AAT-ATAAATAAATATAA-AATTA
* *
4854 AATAAAAATTAATA-AAAGA-T-
1 AATATAAATAAATATAAA-ATTA
*
4874 AATAATAAATTAA-A-AAAATTA
1 AAT-ATAAATAAATATAAAATTA
* *
4895 TATAATAATATAAATATAAAAATA
1 AAT-ATAA-ATAAATATAAAATTA
* *
4919 TATTATATAAT-AATA-ATAATTA
1 -AATATA-AATAAATATAAAATTA
* *
4941 AAT-TATATAAATA-AATATTA
1 AATATAAATAAATATAAAATTA
* *
4961 TATAT-AATATA-ATAAAA-TA
1 AATATAAATAAATATAAAATTA
* *
4980 TATATATTATAAAATATAAATATTA
1 AATATA-AAT-AAATATAAA-ATTA
*
5005 AATATAATTAATAACATATATATATT-
1 AATAT-A--AATAA-ATATA-AAATTA
* *
5031 ATTATAAATAAATA-AATATT-
1 AATATAAATAAATATAAAATTA
*
5051 TA-ATAAATAATATTATAAAA-T-
1 AATATAAATAA-A-TATAAAATTA
* *
5072 AA-ATAAATATATATAAATAATA
1 AATATAAATAAATATAAA-ATTA
*
5094 AATATAAAAATAATAATAAAA--A
1 AATATAAATA-AAT-ATAAAATTA
* *
5116 AATATAATAATAATAAATAAAGTTA
1 AATAT-A-AATAA-ATATAAAATTA
*
5141 AA-A-AATTATAAATA-AAAAATA
1 AATATAA--ATAAATATAAAATTA
5162 AATATATAAT-AA-ATAAAA-TA
1 AATATA-AATAAATATAAAATTA
* *
5182 AATATATAAAAAATCATAATAA-AA
1 AATATA-AATAAAT-ATAA-AATTA
* *
5206 AATAAATAATTAATATATAAAA-AA
1 AAT--ATAAATAA-ATATAAAATTA
*
5230 AATAATAAAATAAAAATAAAA--A
1 AAT-AT-AAATAAATATAAAATTA
*
5252 AA-A-AAATTAAA-ATAAAATAA
1 AATATAAA-TAAATATAAAATTA
*
5272 TAAT-TAATTAAATATTAAAATATAAA
1 -AATATAAATAAATA-TAAAAT-T--A
5298 ATATATAAATAAATA-AAAA-TA
1 A-ATATAAATAAATATAAAATTA
* *
5319 ATTATTTAATTATAATAT-AAA--A
1 A--ATATAAATA-AATATAAAATTA
**
5341 AATATAAA-AATATATATATTTTA
1 AATATAAATAA-ATATA-AAATTA
* *
5364 TTATAAAAATAAA-AT-AAATATA
1 -AATATAAATAAATATAAAAT-TA
* *
5386 TATAAAAATAAATATAATATATTA
1 AATATAAATAAATATAA-A-ATTA
*
5410 AA-ATAAA-ATAATAATAAAAAT-
1 AATATAAATA-AAT-ATAAAATTA
*
5431 ATTATAAA-ATAAT-TAATAATATA
1 AATATAAATA-AATATAA-AAT-TA
**
5454 AATAATAAATATCTATAAAA-TA
1 AAT-ATAAATAAATATAAAATTA
*
5476 AA-ATAAA-AAAT-TAAAAAT-
1 AATATAAATAAATATAAAATTA
* *
5494 AAT-T-TATAAA-A-AAAATAA
1 AATATAAATAAATATAAAATTA
*
5512 AATAATAAATTAATATAATAA-TA
1 AAT-ATAAATAAATATAA-AATTA
* *
5535 AATTTAACATAATAATAAAAAATTA
1 AATATAA-AT-A-AATATAAAATTA
*
5560 TATATAAATTACAA-ATAAAATATA
1 AATATAAA-TA-AATATAAAAT-TA
*
5584 AATAT-AATAAAAATAAA
1 AATATAAATAAATATAAA
5601 TAATATAAAA
Statistics
Matches: 1195, Mismatches: 211, Indels: 439
0.65 0.11 0.24
Matches are distributed among these distances:
17 6 0.01
18 38 0.03
19 98 0.08
20 147 0.12
21 209 0.17
22 191 0.16
23 163 0.14
24 169 0.14
25 109 0.09
26 33 0.03
27 26 0.02
28 3 0.00
29 3 0.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.33
Consensus pattern (22 bp):
AATATAAATAAATATAAAATTA
Found at i:4721 original size:71 final size:69
Alignment explanation
Indices: 3114--7862 Score: 191
Period size: 72 Copynumber: 68.8 Consensus size: 69
3104 ATATATAAAA
* *
3114 AATAAAAATAT-ATAATTCAAAAT-TATTAAAATAAATATAATATAATATAATAATAAATAATAT
1 AATAAAAATATAAT-ATTAAAAATATA-T-AAAT-AA-ATAATATAATATAAAAAT-AATAA-AT
3177 AATTAAAATTA-A
59 AA--AAAATTATA
* * * * * *
3189 GAATAAAAAT-TAAAATAAAAAAAATATATTATATAATAATTTTAAT-T-AAAAT-AT-AATATA
1 -AATAAAAATATAATATTAAAAATATATA-AATA-AATAA-TATAATATAAAAATAATAAATAAA
*
3249 TAATTATAAA
62 AAATTAT--A
* *
3259 AATAAAAAT-TAATAATTAATAAATATTAAAAAAAAATAATATATTATATTAAAAATTAA-AAA-
1 AATAAAAATATAAT-ATTAA-AAATA-TATAAATAAATAATATA--ATA-TAAAAA-TAATAAAT
3321 AAAAAATTA-A
59 AAAAAATTATA
* * ** * * * *
3331 AATTAAAATA-AAAAAAAAAAAAATAT-AATAAAT-ATAAAAT-TAAATATAATTTAAA-AAATA
1 AATAAAAATATAATATTAAAAATATATAAATAAATAATATAATATAAAAATAA--TAAATAAAAA
3391 ATTATA
64 ATTATA
* * *
3397 TATATCAAAATAATTATAAATTTTAAAAA-ATA-AAATAAATAAAATTAATATTAATAAA-AAAA
1 -A-AT--AAA-AA-TAT-AATATTAAAAATATATAAATAAATAATA-TAATA-TAA-AAATAATA
* *
3459 AATAAAATATTAATT
56 AATAAAAAATT-ATA
* * * * * *
3474 AATATAATATAAAATTATTAAAAA-ATA-AAAT---T-ATATAAAATAATCATTATATATATAAA
1 AATA-AAAATATAA-TATTAAAAATATATAAATAAATAATATAATATAA-AAATA-ATAAATAAA
*
3533 TATATTATA
62 -AAATTATA
* * * *
3542 AATAATAAAAATAATA-TAATAA-ATA-AAATATATATTATAA-A-AAAAAT-A-AAATAAAAAA
1 AATAA-AAATATAATATTAAAAATATATAAATAAATAATATAATATAAAAATAATAAATAAAAAA
3600 -TA-A
65 TTATA
* * * * * **
3603 AAT-AATATATAAT-TTATAATTTTAATAAAAAAAATAATAT-ATATTTAAATAAATAATATCAA
1 AATAAAAATATAATATTAAAAATAT-AT-AAATAAATAATATAATATAAAAAT-AATAA-AT-AA
*
3665 ATAAATTTTA
61 A-AAATTATA
* * * *
3675 AATATAAATA-AATA-TAATAATA-ATAAATATATAAATTTAATTATATAAAATAATATTATTAT
1 AATAAAAATATAATATTAAAAATATATAAATAAAT-AATATAA-TATA-AAAATAATA--A--AT
3737 ATAAAAA--ATA
59 A-AAAAATTATA
* * * * * **
3747 AAT-ATAATATAAATATATTAAAATATATATAAT-AATAA-A-AAAAAAAAAAAAATAAATTACT
1 AATAAAAATAT-AATAT-TAAAAATATATA-AATAAATAATATAATATAAAAATAATAAA-TAAA
3808 AAATTATA
62 AAATTATA
* * * * *
3816 TATAAAAATA-AACAAGTAATAAT-TATAAATAAA-AATATAA-A-AAAATTATATAAATAAAAA
1 AATAAAAATATAA-TATTAAAAATATATAAATAAATAATATAATATAAAAATA-ATAAATAAAAA
3876 A-TAT-
64 ATTATA
* ** * ** * * *
3880 AA-AAAAATA-AATAAT-AATGTA-ATAATTAGTTATATAAAATATAAAAATAAT-ATTTAAAAA
1 AATAAAAATATAATATTAAAAATATATAAATAAATA-ATATAATATAAAAATAATAAATAAAAAA
*
3940 TAATA
65 TTATA
* * * * *
3945 AATTAAATAATA-AAAATAAATATAATAAATAAATTAAAAAATTTAATAT-AAAATAA-AAATAA
1 AA-TAAA-AATATAATATTAA-A-AATATATAAA-TAAATAATATAATATAAAAATAATAAATAA
*
4007 ATAAAAT-TA
61 A-AAATTATA
* * *
4016 AATATAAATA-AATA-T-AAAATAT-TAATATAATTAATTATAATA-AAATATTAATTTAATATA
1 AATAAAAATATAATATTAAAAATATATAA-ATAAATAA-TATAATATAAA-AATAA--TAA-ATA
*
4076 TAAAA-T-T-
60 AAAAATTATA
** * * * * ** *
4083 AAT-TTAATATTAT-TTAAAAATATA-AAATAAAAAAATATAAAATAAATAT-AT-TTTAAAATA
1 AATAAAAATATAATATTAAAAATATATAAAT-AAATAATATAATATAAAAATAATAAATAAAAAA
4143 -TA-A
65 TTATA
* * * * *
4146 AAT-AAAATATATATAATATAAAAAAATAAAAATTTTAAA-AATTTAATATATAGAAT-AT-TAT
1 AATAAAAATATA-AT-AT-TAAAAATATATAAA---TAAATAATATAATATA-AAAATAATAAAT
*
4207 AAAAAAATATA
59 AAAAAATTATA
* * * *
4218 AAAAATAAATA-AAAATATAAAAATATAT--ATTAA-AATATTAA-ATAAATATATATAAAT-AA
1 AATAA-AAATATAATAT-TAAAAATATATAAATAAATAATA-TAATATAAAAATA-ATAAATAAA
*
4277 AAATAATA
62 AAATTATA
* * * *
4285 AATAATAATAT-A-ATT-ATAA-ATAT-AATAAATAA-AT-ATATAATAAATTATAAACAAAAAA
1 AATAAAAATATAATATTAAAAATATATAAATAAATAATATAATATAA-AAATAATAAATAAAAAA
4343 TT-TA
65 TTATA
* * * * * * *
4347 TATATAAAA-ATAATATAAATAAATATATATAAAAAAAAATTAAAAAATAATTATATAA-AAATA
1 AATA-AAAATATAATATTAA-AAATATATA-AATAAATAA-TATAATATAA--AAATAATAAATA
*
4410 TAAAAA-AATA
60 -AAAAATTATA
* * * *
4420 ATATAATAAATA-AA-ATT-AAAATCTTATAAA-AAA-AA-A-AAAATAATAATATATTAATATA
1 A-ATAA-AAATATAATATTAAAAAT-ATATAAATAAATAATATAATATAAAAATA-ATAAATA-A
* *
4478 ATAATAATA
61 AAAATTATA
* * * * * **
4487 AAT-TAAATATAATA-AAAAAATA-ATATAATAAA-AATATTAATATAAAATTATATTATTAATT
1 AATAAAAATATAATATTAAAAATATATA-AATAAATAATA-TAATATAAAAATA-ATAAATAAAA
4548 AA-TATA
63 AATTATA
* * * *
4554 ATTAAATTATATAA-A--AAAAATA-ATTAAA-AATATAAATATAATA-AAAAAAAAT-ATTAAA
1 AATAAA-AATATAATATTAAAAATATA-TAAATAA-AT-AATATAATATAAAAATAATAAATAAA
4612 AATATTATA
62 AA-ATTATA
* *
4621 TATTAATATTATTATAATA-TAAATTAAT-TATAAATAAAT-ATATAATATTAAAAATATATAAA
1 -AATAA-A--AATATAATATTAAA--AATATATAAATAAATAATATAATA-TAAAAATA-ATAAA
*
4683 TTAAATAA-TATA
58 -TAAAAAATTATA
* * * **
4695 ATATAAAAATACATAA-ATAAAAAAT-TA-AAAGAAA-AATA-AA-ATTATTATAATAAA-AAAA
1 A-ATAAAAAT--ATAATATTAAAAATATATAAATAAATAATATAATATAAAAATAATAAATAAAA
*
4753 TATTAATA
63 AATT-ATA
* * *
4761 ATATTTAAAAAAATAATA-TAAAAA-AT-TTAATAAATAA-A-AATAT----ATATTAAATTAAA
1 A-A--TAAAAATATAATATTAAAAATATATAAATAAATAATATAATATAAAAATAATAAA-TAAA
*
4817 AAAAT-TA
62 AAATTATA
* * * *
4824 AATATATATATAATAATT-AAAATA-ATAAA-AAATAAAAATTAATAAAAGATAATAATAAATTA
1 AATAAAAATATAAT-ATTAAAAATATATAAATAAAT-AATA-TAATATAA-A-AATAATAAA-T-
4886 AAAAAATTAT-
59 AAAAAATTATA
* * *
4896 -ATAATAATATAA-ATATAAAAATATAT-TATATAATAATAATAAT-T-AAATTATATAAATAAA
1 AATAAAAATATAATAT-TAAAAATATATAAATA-AATAAT-ATAATATAAAAATA-ATAAATAAA
*
4956 TATTATATATA
62 -A-AAT-TATA
* * * * * *
4967 ATATAATAAAATATATATATTATAAA-ATATAAAT-ATTAAATATAAT-TAATAA-CATATATAT
1 A-AT-A-AAAATATA-ATATTAAAAATATATAAATAAAT-AATATAATATAAAAATAATAAATAA
**
5028 ATTATTATA
61 AAAATTATA
* * *
5037 AATAAATAA-ATATTTAATAAATAATATTATAAAATAAATAA-AT-ATATATAAATAATAAATAT
1 AATAAA-AATATA-ATATTAAA-AATA-TAT-AAATAAATAATATAATATAAAAATAATAAATA-
*
5099 AAAAATAATA
60 AAAAATTATA
* * * * *
5109 ATAAAAAAATATAATAATAATAAATAAAGTTAAA-AAATTATA-AATA-AAAAATAAATATATAA
1 A-ATAAAAATATAATATTAA-AAATATA--TAAATAAATAATATAATATAAAAAT-AATAAATAA
*
5171 TAAA-TA-A
61 AAAATTATA
* * * * * * *
5178 AATAAATATATAAAAAATCATAATA-AAAAATAAATAAT-TAATATATAAA-AA-AAATAATAAA
1 AATAAAAATAT-AATATTAAAAATATATAAATAAATAATATAATATAAAAATAATAAATAA-AAA
*
5239 A-TAAA
64 ATTATA
* * * * *
5244 AATAAAAA-AAAAAATT--AAA-ATA-AAAT-AATAAT-TAAT-TAAATATTA-AAATATAAAAT
1 AATAAAAATATAATATTAAAAATATATAAATAAATAATATAATATAAAAATAATAAATAAAAAAT
5300 ATATA
66 -TATA
** * * ***
5305 AATAAATAA-A-AATAATTATTTAAT-TAT-AAT--ATAA-AAAATATAAAAAT-ATATATATTT
1 AATAAA-AATATAAT-ATTA-AAAATATATAAATAAATAATATAATATAAAAATAATAAATAAAA
*
5362 TATTATA
63 AATTATA
* * *
5369 AAAATAAAATA-AATATATATAAA-A-ATAAATATAAT-ATATTAAAAT-AAAATAAT-AATAAA
1 AATA-AAAATATAATAT-TAAAAATATATAAATA-AATAATA-TAATATAAAAATAATAAATAAA
5428 AATATTAT-
62 AA-ATTATA
* * * * * * * *
5436 AA-AATAAT-TAATAATATAAATA-ATAAATATCTATAAAATAAAATAAAAA-ATTAAA-AATAA
1 AATAAAAATATAATATTAAAAATATATAAATA--AATAATATAATATAAAAATAATAAATAAAAA
*
5496 TTTATA
64 ATTATA
* * * * *
5502 AA-AAAAATAAAATAATAAATTAATATA-ATAATAAATTTAACATAATAATAAAAA-ATTATAT-
1 AATAAAAATATAATATTAAA--AATATATA-AATAAA--TAATATAAT-ATAAAAATAATAAATA
* *
5563 ATAAATTACA
60 AAAAATTATA
* * * *
5573 AAT-AAAATATAAATATAATAAAAATAAATAATATAAA-AATATTAA-A-AAAAA-ATTTAATTA
1 AATAAAAATAT-AATAT--TAAAAATATATAA-ATAAATAATA-TAATATAAAAATAATAAATAA
*
5633 TAAATTAT-
61 AAAATTATA
* * * * * * *
5641 ATTAAATA-ATAAT-TTAGAAATA-AT-ATTATATATTAT-ATATATAAAA-AATAATTAAAATA
1 AATAAAAATATAATATTAAAAATATATAAATAAATAATATAATATA-AAAATAATAAATAAAA-A
5700 A--ATA
64 ATTATA
* * * *
5704 AAT-ATAATTTAATATT--AAA-ATATAAAT-TATAATA-AATATATAAATAAATAGAATAAAAT
1 AATAAAAATATAATATTAAAAATATATAAATAAATAATATAATATAAAAAT-AATA-AATAAAA-
*
5763 TATTAT-
63 AATTATA
* *
5769 AATAAAAATA-AATAAATAAAATTATAATAAAATAAAATAAATAAATAATATAAATAAATAATAA
1 AATAAAAATATAAT-ATTAAAAATAT-AT-AAAT-AAAT-AAT--ATAATAT-AA-AAATAATAA
5833 A-AAATAAATTATA
57 ATAAA-AAATTATA
* * *
5846 AA-AAAAATATAAAAAATAAATATAATATTATATAAAAAATAAT-TAA-ATTAAAAA-AATTAAA
1 AATAAAAATAT--AATATTAA-A-AATA-TATA-AATAAATAATATAATA-TAAAAATAA-T-AA
5907 ATATAAAAATATATA
57 ATA-AAAAAT-TATA
* * * * * * *
5922 AATAATATTATATTTAATAATAAATATTTATAATAAATAATA-AAAATAAAGTTAATTATAAAAT
1 AATAAAAATATA-ATATTAA-AAATATATA-AATAAATAATATAATATAAA---AATAAT-AAA-
5986 TAAATATAATT-T-
58 TAAA-A-AATTATA
* * *
5998 AATAAAAATAT-A-ATT---AAT-TTTAAATATATTAATATTAT-TAAAAAATAAT-AATAAAAA
1 AATAAAAATATAATATTAAAAATATATAAATA-AATAATATAATAT-AAAAATAATAAATAAAAA
6055 TATTA-A
64 -ATTATA
* * *
6061 AATTAATATAATAT-A-ATT-AAAATA-AT-AATAAAATATGTAAAATATTAAAA-AATAAATAA
1 AA-TAA-A-AATATAATATTAAAAATATATAAAT-AAATA-ATATAATATAAAAATAATAAATAA
*
6120 TAAATT-TA
61 AAAATTATA
*
6128 AATATAAAA-A-AA-AATAAAAATAT-T--ATAAATAATATATATATAAATTTAATAATAAATAA
1 AATA-AAAATATAATATTAAAAATATATAAATAAATAATATA-ATATAAA---AATAATAAATAA
*
6187 ATAATTA-A
61 AAAATTATA
* * * *
6195 ATTAAATATAAAATTAATTAAAAA-ATATAAA-AAA-AATAATAATAT---AAT-TTAAAT-AAA
1 AATAAAAATATAA-T-ATTAAAAATATATAAATAAATAAT-ATAATATAAAAATAATAAATAAAA
*
6252 TATTAT-
63 AATTATA
* * * * * * *
6258 AATAATAATTATAAAATTAAATAA-AAATTAAT-AATTATATTTATATATAAAATAAAATAATAA
1 AATAA-AAATATAATATTAAA-AATATATAAATAAATAATA-TAATATA-AAAATAATA-AATAA
* * *
6321 TAATTTAATT
61 AAAATT-ATA
* * * * * * *
6331 AATAAATCAATATATTAAATAAAAATTTTTCATATTAAATAAT-TAATATACATAAAT-ATCATT
1 AATAAA--AATATAAT-ATTAAAAATATAT-A-AATAAATAATATAATATA-A-AAATAATAAAT
*
6394 AATAATATTATA
59 AA-AAAATTATA
* * * *
6406 TAA-AATAATATTAA-AATATAATATATTTAAA-AAATAA-ATAAT-TAAATAATAA-AATATAA
1 -AATAAAAATA-TAATATTA-AAAATATATAAATAAATAATATAATATAAA-AATAATAA-ATAA
6465 AAAA-TAT-
61 AAAATTATA
* *
6472 AAT-AAATTATAA-ATATAAAAATAAATATAAA-ATATAAT-TAAT-TAAAAATAAATAAATATA
1 AATAAAAATATAATAT-TAAAAAT--ATATAAATAAATAATATAATATAAAAAT-AATAAATA-A
*
6532 ATAATTA-A
61 AAAATTATA
* * * * *
6540 ATATTAAAAT-TAATAATTAATTAATATATAATTAAATTTAA-ATTAA-ATAATATAAT-TTTAA
1 A-ATAAAAATATAAT-ATTAA-AAATATATAAATAAA--TAATA-TAATATAA-A-AATAATAAA
6601 TAAAATAATTATA
58 TAAAA-AATTATA
* * * * * *
6614 ATTAAAAAAATAATA-GAATTTAAT-TATTAAA-AAATAATACAA-AT-AATATATATAAATAAA
1 AATAAAAATATAATATTAA--AAATATA-TAAATAAATAATATAATATAAAAATA-ATAAATAAA
6674 ATATATTATA
62 A-A-ATTATA
* * *
6684 TATTATATAAAA-AT-ATATATAAAAA-A-A-AAA-AAGTAATA-AATA-AATTATTAATTAAA-
1 -A--ATA-AAAATATAATAT-TAAAAATATATAAATAAATAATATAATATAA-AAATAA-TAAAT
* *
6740 AAATAATAATA
59 AAAAAATTATA
* * * * * * * *
6751 GATAAAATA-AAAAAATTATAAATATAAAAAGAATAATAATATAATATTAATATAATAATATAAA
1 AATAAAA-ATATAATATTAAAAATATATAAA-TA-AATAATATAATATAAAAATAATAA-ATAAA
*
6815 ATAAATATA
62 A-AATTATA
* * * *
6824 AATAAAAATATATTATTATATAATAAATAATATAAAT-ATAT-ATATAAAAAATATATATATTAA
1 AATAAAAATATAATATTA-AAAATATATAA-ATAAATAATATAATAT-AAAAATA-ATA-AATAA
* *
6887 ATAATAATA
61 AAAATTATA
* *
6896 AAT-AAAATAATTAATTATAATAAAAA-ATA-AAATATAT-ATATAAATATAATATAA-ATTAAA
1 AATAAAAAT-A-TAA-TAT--TAAAAATATATAAATAAATAATAT-AATATAA-A-AATAATAAA
*
6956 -AAAAATATAATA
58 TAAAAA-ATTATA
* * *
6968 TAATAAAAAT-TAA-A--AAATAATAATATAATAAAAATAATTATATTAT-TAAA-AATAAATAA
1 -AATAAAAATATAATATTAAA-AAT-ATATAA-ATAAATAA-TATAATATAAAAATAATAAATAA
7027 ATAAA-TA-A
61 A-AAATTATA
* * * * * *
7035 AA-AAAATTATAATA-TAAATTAATATTTATAT-TATAAAATGAATAT-ATAATAAATATAATAA
1 AATAAAAATATAATATTAAA--AATATATAAATAAATAATAT-AATATAAAAAT-AATA-AATAA
7096 AATATATTATA
61 AA-A-ATTATA
* * * * *
7107 AATATATAAA-A-AATATT-TAAATTTTTAAA-AAATATAAATAATAATAATAATAATAATATAT
1 AATA-A-AAATATAATATTAAAAATATATAAATAAATA-ATATAAT-ATAAAAATAATAA-ATA-
* *
7168 ATAAATTAGA
60 AAAAATTATA
* * * *
7178 TAATATAAATAT-ATAATAAAAAT-TAATAAATAAA-AATATATAAATAATATAATATTAAA-AA
1 -AATAAAAATATAATATTAAAAATAT-ATAAATAAATAATATA-ATATAA-A-AATAATAAATAA
7239 AAAATTTAATA
61 AAAA-TT-ATA
* * * * *
7250 ATATATAAA-ATAATTTATAAAAAT-TATAAAAAAATAAT-TAATATAAAATTAAAAAATTAAAT
1 A-ATAAAAATATAATAT-TAAAAATATATAAATAAATAATATAATATAAAAATAATAAA-TAAA-
7312 TAAATTATA
62 -AAATTATA
* * * * * *
7321 ATATAGTAACTATAA-ATTAAAAA-AAATAATATAAAT-ATATAAAAAAATATAATATTATAATT
1 A-ATA-AAAATATAATATTAAAAATATATAA-ATAAATAATATAATATAA-A-AATA--ATAAAT
7383 ATAAAAATTAGTA
59 A-AAAAATTA-TA
* * * * *
7396 AAT-ATAATATAATATTATATAAA-AAATAAA-AAAAAATATTATTTAATAATAAATATTAAAT-
1 AATAAAAATATAATATTA-A-AAATATATAAATAAATAATA-TA-AT-ATAA-AAATAATAAATA
* *
7457 ATAAATTAATT
60 AAAAATT-ATA
* * * * *
7468 AAT-ATAA-ATAATAATAAAAAT-TA-AAA-AAATAATA-ATTATAAAAAATTATAATATAATAT
1 AATAAAAATATAATATTAAAAATATATAAATAAATAATATAATAT-AAAAATAATAA-ATAA-AA
7527 AA-TATA
63 AATTATA
** * * * **
7533 AAT-AATTTAT-ATAATAAATA-ATA-AAATAAAT-AT-TTATATTTAAATAAATAAATTAAAAT
1 AATAAAAATATAATATTAAAAATATATAAATAAATAATATAATATAAAAAT-AATAAA-TAAAA-
*
7592 AATTTTAA
63 AATTAT-A
* * * * *
7600 AATATTATATATAAT-TTAAAAAATATAAAAATAAATATTTAAATAATAAAAATAATAATAATAT
1 AATA-AAAATATAATATT-AAAAATATATAAATAAATA---ATATAATATAAA-AATAAT-A-A-
7664 ATAAAAAATTAT-
57 ATAAAAAATTATA
* * * * *
7676 AATAAATAAATATTAA-AATAAAAAT-TATATAAT-AATAAAAT-ATTTAATAAAT-ATTATTAA
1 AAT-AA-AAATA-TAATATTAAAAATATATA-AATAAATAATATAATATAA-AAATAATAAATAA
*
7736 TAAA-T-TA
61 AAAATTATA
* * * *
7743 ATTAAAAATAT-ATATATAATTAATA-ATAAATAAATATTAT-ATAT-ATAATAAATAAATAATA
1 AATAAAAATATAATAT-TAA-AAATATATAAATAAATAATATAATATAAAAAT-AATAAATAA-A
*
7804 TAATTA-A
62 AAATTATA
* * * * * * *
7811 AA-AAAAATTTAATAATAAATAAAAT-TAAATTAATTATATTATATAAATATAA
1 AATAAAAATATAATATTAAA-AATATATAAATAAATAATATAATATAAAAATAA
7863 ATTTAATAAT
Statistics
Matches: 3396, Mismatches: 636, Indels: 1290
0.64 0.12 0.24
Matches are distributed among these distances:
59 18 0.01
60 28 0.01
61 49 0.01
62 91 0.03
63 146 0.04
64 173 0.05
65 221 0.07
66 274 0.08
67 278 0.08
68 250 0.07
69 240 0.07
70 188 0.06
71 316 0.09
72 335 0.10
73 253 0.07
74 166 0.05
75 120 0.04
76 113 0.03
77 71 0.02
78 36 0.01
79 21 0.01
80 8 0.00
81 1 0.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.34
Consensus pattern (69 bp):
AATAAAAATATAATATTAAAAATATATAAATAAATAATATAATATAAAAATAATAAATAAAAAAT
TATA
Found at i:4936 original size:26 final size:26
Alignment explanation
Indices: 4872--5136 Score: 86
Period size: 28 Copynumber: 9.6 Consensus size: 26
4862 TTAATAAAAG
4872 ATAATAATAA-ATTAAAAA-A-ATTAT
1 ATAATAATAATA-TAAAAATATATTAT
4896 ATAATAATATAAATATAAAAATATATTAT
1 ATAAT-A-AT-AATATAAAAATATATTAT
* *
4925 ATAATAATAATAATTAAATTATATAAATAAAT
1 ATAATAATAAT-A-TAAA--A-ATATAT-TAT
*
4957 ATTATATATAATATAATAAA-ATATATAT
1 ATAATA-ATAATATAA-AAATATAT-TAT
* * *
4985 ATTATAA-AATATAAATAT-TA-AAT
1 ATAATAATAATATAAAAATATATTAT
* * *
5008 ATAATTAATAACATATATATATTATTAT
1 ATAA-TAATAATATAAAAATA-TATTAT
5036 A-AATAAATAAATATTTAATAAATAATATTAT
1 ATAAT-AAT-AATA--TAA-AAAT-ATATTAT
* *
5067 AAAATAAATAAATATATATAAATA-ATAAAT
1 ATAAT-AAT-AATATA-A-AAATATAT-TAT
* *
5097 ATAAAAATAATAATAAAAAAATA-TA-
1 ATAATAATAAT-ATAAAAATATATTAT
5122 ATAATAATAA-ATAAA
1 ATAATAATAATATAAA
5137 GTTAAAAAAT
Statistics
Matches: 190, Mismatches: 20, Indels: 63
0.70 0.07 0.23
Matches are distributed among these distances:
23 10 0.05
24 8 0.04
25 23 0.12
26 14 0.07
27 23 0.12
28 30 0.16
29 19 0.10
30 12 0.06
31 24 0.13
32 22 0.12
33 5 0.03
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.36
Consensus pattern (26 bp):
ATAATAATAATATAAAAATATATTAT
Found at i:5251 original size:136 final size:136
Alignment explanation
Indices: 5034--5624 Score: 370
Period size: 137 Copynumber: 4.3 Consensus size: 136
5024 ATATATTATT
* * * * * *
5034 ATAAATAAATAAATATTTAATAAATAATATTATAAAATAAATAAATATATATAAATAATAAAT-A
1 ATAAATAAATAAATATATAAAAAATAAAAATAAAAAATAAATAATTATATATAAA-AA-AAATAA
*
5098 TAAAAATAATAATAAAAAAATATAATAATAAT-AAATAA-AGTTAA-AAA-ATTATAAATAAAAA
64 T-AAAATAAAAATAAAAAAATATAATAA-AATAAAATAATA-TTAATAAATATTATAAATAAAAA
5159 ATAAATATATA
126 ATAAATATATA
* *
5170 ATAAATAAAATAAATATATAAAAAATCATAATAAAAAATAAATAATTAATATATAAAAAAAATAA
1 ATAAAT-AAATAAATATATAAAAAATAAAAATAAAAAATAAATAATT-ATATATAAAAAAAATAA
* *
5235 TAAAATAAAAATAAAAAAA-AAAATTAAAATAAAATAATAATTAATTAAATATTA-AAATATAAA
64 TAAAATAAAAATAAAAAAATATAA-TAAAATAAAATAAT-ATTAA-TAAATATTATAAATAAAAA
5298 AT--ATATA-A
126 ATAAATATATA
* * * *
5306 ATAAATAAAAATAATTATTTAATTATAATATAAAAAATATAAAAATATATATATTTTATTATAAA
1 ATAAAT--AAATAAATATATAA--A-AA-AT-AAAAATA-AAAAATAAATA-ATTATA-TAT-AA
* * * *
5371 AATAAAATAAATATATATAAAAATAAATATAATATATTAAAATAAAATAATAATAA-AAATATTA
55 AA-AAAAT-AATA-AAATAAAAATAAA-AAAATATAATAAAATAAAATAATATTAATAAATATTA
* *
5435 T--A-AAATAATTAATA-AT-
116 TAAATAAAAAATAAATATATA
* * * *
5451 ATAAAT-AATAAATATCTATAAAAT-AAAATAAAAAATTAAA-AATAATTTATAAAAAAAATAA-
1 ATAAATAAATAAATATATAAAAAATAAAAATAAAAAA-TAAATAATTATATATAAAAAAAATAAT
* * * * *
5512 AATAATAAATTAATATAATAATA-AATTTAACATAATAATAAAAAATTATATATAA-ATTACAAA
65 AA-AATAAA--AATAAAAAAATATAA--TAAAATAA-AAT--AATATTA-ATA-AATATTATAAA
*
5575 TAAAATATAAATATAATA
120 TAAAAAATAAATAT-ATA
* *
5593 A-AAATAAAT-AATATA-AAAATATTAAAA-AAAAA
1 ATAAATAAATAAATATATAAAAAATAAAAATAAAAA
5625 TTTAATTATA
Statistics
Matches: 364, Mismatches: 42, Indels: 94
0.73 0.08 0.19
Matches are distributed among these distances:
128 1 0.00
129 7 0.02
130 8 0.02
131 17 0.05
132 7 0.02
133 3 0.01
134 8 0.02
135 13 0.04
136 57 0.16
137 62 0.17
138 13 0.04
139 25 0.07
140 17 0.05
141 17 0.05
142 19 0.05
143 12 0.03
144 11 0.03
145 12 0.03
146 16 0.04
147 4 0.01
148 16 0.04
149 17 0.05
150 2 0.01
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (136 bp):
ATAAATAAATAAATATATAAAAAATAAAAATAAAAAATAAATAATTATATATAAAAAAAATAATA
AAATAAAAATAAAAAAATATAATAAAATAAAATAATATTAATAAATATTATAAATAAAAAATAAA
TATATA
Found at i:5297 original size:123 final size:123
Alignment explanation
Indices: 5084--5316 Score: 262
Period size: 125 Copynumber: 1.9 Consensus size: 123
5074 ATAAATATAT
* * * * * *
5084 ATAAATAATAAATATAAAAATAATAATAAAAAAATATAATAATAATAAATAAAGTTAAAAAATTA
1 ATAAATAATAAATATAAAAAAAATAATAAAAAAAAATAATAAAAAAAAATAAAGATAAAAAATAA
*
5149 TAAATAAAAAATAAATATATAAT-AAATAAAATAAATATATAAAAAATCATAATAAAAA
66 TAAATAAAAAATAAATATATAATAAAAT-AAATAAATAAATAAAAAATCATAATAAAAA
5207 ATAAATAATTAATATATAAAAAAAATAATAAAATAAAAATAA-AAAAAAAAATTAAA-ATAAAAT
1 ATAAATAA-TAA-ATATAAAAAAAATAATAAAA-AAAAATAATAAAAAAAAA-TAAAGATAAAA-
* * * * *
5270 AATAATTAATTAAATATTAA-A-AT-ATAAAATATATAAATAAATAAAAA
61 AATAATAAATAAAAAATAAATATATAATAAAATAAATAAATAAATAAAAA
5317 TAATTATTTA
Statistics
Matches: 92, Mismatches: 12, Indels: 12
0.79 0.10 0.10
Matches are distributed among these distances:
123 25 0.27
124 9 0.10
125 32 0.35
126 26 0.28
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.27
Consensus pattern (123 bp):
ATAAATAATAAATATAAAAAAAATAATAAAAAAAAATAATAAAAAAAAATAAAGATAAAAAATAA
TAAATAAAAAATAAATATATAATAAAATAAATAAATAAATAAAAAATCATAATAAAAA
Found at i:5829 original size:180 final size:181
Alignment explanation
Indices: 5498--5832 Score: 395
Period size: 180 Copynumber: 1.9 Consensus size: 181
5488 AAAAATAATT
* *
5498 TATAAAAAAAATAAAATAATAAATTAATATAATAATAAATTTAACATAATAATAAAAAATTATAT
1 TATAAAAAAAATAAAATAATAAATTAATATAATAATAAATATAACATAATAATAAAAAATTATAA
*
5563 ATAAATTACAAATAAAATATAAATATAATAAAAATAAATAATATAAAAATATTAAAAAAAAATTT
66 ATAAATTACAAATAAAATATAAATATAATAAAAATAAATAATATAAAAATATTAAAAAAAAATAT
*
5628 AATTATAAATTATATTAAATAATAATTTAGAAATAATATTATATATTATATA
131 AA-TATAAATTATAATAAATAATAATTTAGAAATAATATTATATATTATATA
* * * *
5680 TATAAAAAATAATTAAAATAAATAAATATAATTTAATATTAAAATATAA-ATTATAAT-AAATA-
1 TATAAAAAA-AA-TAAAAT-AATAAAT-TAATATAATAAT-AAATATAACATAATAATAAAAAAT
* * *
5742 TATAAATAAA-TA-GAATAAAAT-T-ATTATAATAAAAATAAATAA-ATAAAATTA-TAATAAAA
61 TATAAATAAATTACAAATAAAATATAAATATAATAAAAATAAATAATATAAAAATATTAA-AAAA
5801 TAAA-ATAA-ATAAATAATATAAATAAATAATAA
125 -AAATATAATATAAAT--TAT-AATAAATAATAA
5833 AAAATAAATT
Statistics
Matches: 132, Mismatches: 11, Indels: 22
0.80 0.07 0.13
Matches are distributed among these distances:
177 6 0.05
178 3 0.02
179 18 0.14
180 33 0.25
181 1 0.01
182 17 0.13
183 4 0.03
184 15 0.11
185 11 0.08
186 17 0.13
187 7 0.05
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (181 bp):
TATAAAAAAAATAAAATAATAAATTAATATAATAATAAATATAACATAATAATAAAAAATTATAA
ATAAATTACAAATAAAATATAAATATAATAAAAATAAATAATATAAAAATATTAAAAAAAAATAT
AATATAAATTATAATAAATAATAATTTAGAAATAATATTATATATTATATA
Found at i:5947 original size:61 final size:55
Alignment explanation
Indices: 5694--5947 Score: 172
Period size: 56 Copynumber: 4.6 Consensus size: 55
5684 AAAAATAATT
* * * * * * *
5694 AAAATAAATA-AATATAATTTAATATTAAA-ATATAAATTATAATAAATATATAA
1 AAAATAAATATAATATTATATAATAATAAATAAATAAATTAAAAAAAAAATATAA
** * *
5747 ATAAATAGAATA-AA-ATTATTATAATAA-AAATAAATAAA-TAAAATTATAATAAAA
1 A-AAATA-AATATAATATTA-TATAATAATAAATAAATAAATTAAAAAAAAAATATAA
* *
5801 TAAAATAAATA-AATAATATAAATAAATAATAAA-AAATAAATTATAAAAAAAATATAA
1 -AAAATAAATATAAT-AT-TATAT-AATAATAAATAAATAAATTAAAAAAAAAATATAA
*
5858 AAAATAAATATAATATTATAT-A-AA-AAATAATTAAATTAAAAAAATTAAAATATAA
1 AAAATAAATATAATATTATATAATAATAAATAAATAAATT-AAAAAA--AAAATATAA
5913 AAATATATAA-ATAATATTATATTTAATAATAAATA
1 AAA-ATA-AATATAATATTATA--TAATAATAAATA
5948 TTTATAATAA
Statistics
Matches: 160, Mismatches: 18, Indels: 38
0.74 0.08 0.18
Matches are distributed among these distances:
51 3 0.02
52 10 0.06
53 13 0.08
54 27 0.17
55 39 0.24
56 40 0.25
57 19 0.12
58 1 0.01
59 1 0.01
60 2 0.01
61 5 0.03
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (55 bp):
AAAATAAATATAATATTATATAATAATAAATAAATAAATTAAAAAAAAAATATAA
Found at i:5954 original size:84 final size:80
Alignment explanation
Indices: 5854--6500 Score: 189
Period size: 83 Copynumber: 8.2 Consensus size: 80
5844 TAAAAAAAAT
* *
5854 ATAAAAAATAAATATAATATTATATAAAAAATAATTAAATTAAAAAAATTAAAATATAAAAATAT
1 ATAATAAATATATATAATATTATATAAAAAATAA-T-AATTAAAAAAATTAAAATAT-AAAATAT
5919 ATAAATAATATTATATTTA
63 ATAAATAATATTA-ATTTA
* * * **
5938 ATAATAAATATTTATAATA-AATA-ATAAAAATAAAGTTAATT-ATAAAATT-AAATATAATTTA
1 ATAATAAATATATATAATATTATATA-AAAAAT-AA--TAATTAAAAAAATTAAAATATAAAATA
5999 -ATAAA-AATA-TAA-TTA
62 TATAAATAATATTAATTTA
** *
6014 ATTTTAAATATAT-TAATATTAT-TAAAAAATAATAA-TAAAAATATTAAAAT-T--AATATA-A
1 ATAATAAATATATATAATATTATATAAAAAATAATAATTAAAAAAATTAAAATATAAAATATATA
* **
6072 TAT-A-ATTAAAATA
66 AATAATATTAATTTA
* * * **
6085 ATAATAAAATATGTAAAATATTA-AAAAATAAATAATAAATTTAAATATAAAAAAAAATA-AAAA
1 ATAAT-AAATATATATAATATTATATAAA-AAATAAT-AA-TTAAA-A-AAATTAAAATATAAAA
6148 TATTATAAATAATATATATATAAATTTA
60 TA-TAT--A-AATA-ATAT-T-AATTTA
* * * * *
6176 ATAATAAATAAATAATTAA-ATTAAATATAAAAT--TAATTAAAAAATATAAAAAAAATAATAAT
1 ATAATAAATATAT-A-TAATATTATATAAAAAATAATAATTAAAAAA-AT-TAAAATATAA-AAT
6238 ATAATTTAAATAA-A-T-ATTATA
61 AT-A--TAAATAATATTAATT-TA
* * * * *
6259 ATAAT-AAT-TATA-AA-ATTAAATAAAAATTAATAATT----ATATTTATATAT-AAA-ATA-A
1 ATAATAAATATATATAATATTATATAAAAAATAATAATTAAAAAAATTAAAATATAAAATATATA
*
6313 AATAATAATAATTTA
66 AATAATATTAATTTA
* * * ** * * *
6328 ATTAATAAAT-CA-AT-ATATTAAATAAAAATTTTTCATATT-AAATAATTAATATACATAAATA
1 A-TAATAAATATATATAATATTATATAAAAAATAAT-A-ATTAAAAAAATTAAAATATA-AAATA
* *
6389 TCATTAATAATATT-ATATA
62 T-ATAAATAATATTAATTTA
* * * *
6408 A-AATAATATTAAAATATAATA-TATTTAAAAAATAAATAATT-AAATAA-TAAAATATAAAAAA
1 ATAATAA-A-T-ATATATAATATTATATAAAAAAT-AATAATTAAAAAAATTAAAATATAAAATA
* *
6469 TAT-AATAAATTATAAATATA
62 TATAAAT-AA-TATTAATTTA
*
6489 AAAATAAATATA
1 ATAATAAATATA
6501 AAATATAATT
Statistics
Matches: 425, Mismatches: 64, Indels: 153
0.66 0.10 0.24
Matches are distributed among these distances:
67 6 0.01
68 1 0.00
69 5 0.01
70 18 0.04
71 28 0.07
72 20 0.05
73 18 0.04
74 13 0.03
75 15 0.04
76 25 0.06
77 5 0.01
78 28 0.07
79 20 0.05
80 27 0.06
81 32 0.08
82 30 0.07
83 35 0.08
84 27 0.06
85 5 0.01
86 5 0.01
87 12 0.03
88 10 0.02
89 9 0.02
90 7 0.02
91 19 0.04
92 5 0.01
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (80 bp):
ATAATAAATATATATAATATTATATAAAAAATAATAATTAAAAAAATTAAAATATAAAATATATA
AATAATATTAATTTA
Found at i:6056 original size:9 final size:9
Alignment explanation
Indices: 6044--6161 Score: 55
Period size: 9 Copynumber: 12.8 Consensus size: 9
6034 ATTAAAAAAT
6044 AATAATAAA
1 AATAATAAA
*
6053 AATATTAAA
1 AATAATAAA
*
6062 ATTAATATAA
1 AATAATA-AA
* *
6072 TATAATTAA
1 AATAATAAA
6081 AATAATAATA
1 AATAATAA-A
*
6091 AA-ATATGTAA
1 AATA-AT-AAA
*
6101 AATATTAAAA
1 AATAAT-AAA
6111 AATAAATAATA
1 AAT-AATAA-A
*
6122 AAT-TTAAA
1 AATAATAAA
*
6130 TATAA-AAA
1 AATAATAAA
6138 AA-AATAAA
1 AATAATAAA
* *
6146 AATATTATA
1 AATAATAAA
6155 AATAATA
1 AATAATA
6162 TATATATAAA
Statistics
Matches: 79, Mismatches: 20, Indels: 20
0.66 0.17 0.17
Matches are distributed among these distances:
7 2 0.03
8 12 0.15
9 35 0.44
10 22 0.28
11 8 0.10
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (9 bp):
AATAATAAA
Found at i:6302 original size:32 final size:31
Alignment explanation
Indices: 6233--6337 Score: 99
Period size: 31 Copynumber: 3.4 Consensus size: 31
6223 AAAAAAAATA
* * *
6233 ATAA-TATAATTTAAATAAATATT-ATAATA
1 ATAATTATAAATTAAATAAAAATTAATAATT
6262 ATAATTATAAAATTAAATAAAAATTAATAATT
1 ATAATTAT-AAATTAAATAAAAATTAATAATT
* * * *
6294 ATATTTATATATAAAATAAAATAATAATAATT
1 ATAATTATAAATTAAATAAAA-ATTAATAATT
6326 -TAATTAATAAAT
1 ATAATT-ATAAAT
6338 CAATATATTA
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
29 4 0.06
30 3 0.05
31 29 0.47
32 26 0.42
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (31 bp):
ATAATTATAAATTAAATAAAAATTAATAATT
Found at i:6408 original size:23 final size:23
Alignment explanation
Indices: 6374--6430 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
6364 ATTAAATAAT
*
6374 TAATA-TACATAAAT-ATCATTAA
1 TAATATTATATAAATAAT-ATTAA
6396 TAATATTATATAAAATAATATTAA
1 TAATATTATAT-AAATAATATTAA
*
6420 -AATATAATATA
1 TAATATTATATA
6431 TTTAAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
22 6 0.20
23 13 0.43
24 9 0.30
25 2 0.07
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.39
Consensus pattern (23 bp):
TAATATTATATAAATAATATTAA
Found at i:6705 original size:91 final size:87
Alignment explanation
Indices: 6613--6948 Score: 235
Period size: 89 Copynumber: 3.7 Consensus size: 87
6603 AAATAATTAT
6613 AATTAAAAAAATAATAGAATTTAATTATTAA-AAAATAATACAAATAATATATATAAATAAAATA
1 AATTAAAAAAATAATA-AATTTAATTA-TAATAAAA-AATA-AAATAATATATATAAATAAAATA
6677 TATTATATATTATATAAAAATATATATA
62 TATTATATA-TATA-AAAAATATATATA
** * * *
6705 AAAAAAAAAAAGTAATAAA-TAAATTATTAATTAAAAAAT--AATAATAGATA-AAATAAAA-AA
1 AATTAAAAAAA-TAATAAATTTAATTA-TAA-TAAAAAATAAAATAATATATATAAATAAAATAT
*
6765 ATTATAAATATAAAAAGAATAATAATATA
63 ATTATATATAT-AAAA-AAT-AT-ATATA
* * ** * * * * *
6794 ATATTAATATAATAATATAAAATAAATATAA-ATAAAAATATATTATTATATAATAAATAATATA
1 A-ATTAAAAAAATAATA-AATTTAATTATAATA-AAAAATAAAATAATATAT-ATAAATAAAATA
*
6858 -AATATATATATAAAAAATATATAT-
62 TATTATATATATAAAAAATATATATA
*
6882 -ATTAAATAATAATAAATAAAATAATTAATTATAATAAAAAATAAAAT-ATATATATAAATATAA
1 AATTAAA-AA-AAT-AAT-AAAT--TTAATTATAATAAAAAATAAAATAATATATATAAATAAAA
6945 TATA
60 TATA
6949 AATTAAAAAA
Statistics
Matches: 191, Mismatches: 29, Indels: 50
0.71 0.11 0.19
Matches are distributed among these distances:
86 11 0.06
87 13 0.07
88 14 0.07
89 46 0.24
90 20 0.10
91 41 0.21
92 20 0.10
93 25 0.13
94 1 0.01
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.33
Consensus pattern (87 bp):
AATTAAAAAAATAATAAATTTAATTATAATAAAAAATAAAATAATATATATAAATAAAATATATT
ATATATATAAAAAATATATATA
Found at i:6761 original size:67 final size:69
Alignment explanation
Indices: 6642--8657 Score: 219
Period size: 68 Copynumber: 29.7 Consensus size: 69
6632 TTTAATTATT
* * * * *
6642 AAAAAATAATACAAATAATA-T-ATATAAATAAAATATATTATATATTATATAAAAATATATATA
1 AAAAAATAATA-ATATAATATTAATAT-AATAAAATAAAATAAATA-TAAATAAAAATATATATA
6705 AA-A-AA
63 AATATAA
* *
6710 AAAAAAGTAATAA-ATAAATTATTAAT-TAA-AAAATAATAATAGATA-AAATAAAAAAAT-TAT
1 AAAAAA-TAATAATAT-AA-TATTAATATAATAAAATAA-AATAAATATAAATAAAAATATATAT
6770 AAATATAA
62 AAATATAA
* * *
6778 AAAGAATAATAATATAATATTAATATAATAATATAAAATAAATATAAATAAAAATATAT-T-ATT
1 AAAAAATAATAATATAATATTAATATAATAAAATAAAATAAATATAAATAAAAATATATATAAAT
*
6841 ATAT
66 ATAA
* *
6845 AATAAATAAT-ATA-AATA-TATATATAA-AAAATATATATATTAAATA-ATAATAAATAAAATA
1 AAAAAATAATAATATAATATTA-ATATAATAAAATA-A-A-A-TAAATATA-AATAAA-AATATA
*
6905 -ATTAATTATAA
59 TA-TAAATATAA
* * *
6916 TAAAAAATAA-AATATATATATAAATATAATATAAATTAAAAAAAATATAATATAATAAAAAT-T
1 -AAAAAATAATAATATA-ATATTAATATAATA-AAA-TAAAATAAATATAA-ATAA-AAATATAT
*
6979 A-AAAAATAA
60 ATAAATATAA
* * * * * *
6988 TAATATAATAAAAATAATTATATTATTA-AAAATAAAT-AAATAAATA-AAA-AAAATTATAATA
1 -AA-AAAATAATAAT-ATAATATTAATATAATA-AAATAAAATAAATATAAATAAAAATAT-ATA
7049 TAAAT-TAA
61 TAAATATAA
** * * * * * *
7057 TATTTATATTATAAAATGAATATATAATA-AATATAATAAAATATATTATAAATATATAAAAAAT
1 -A-AAAAATAATAATAT-AATAT-TAATATAATAAAATAAAATA-AATAT-AA-ATA-AAAATAT
* * **
7121 ATTTAAATTTTT
58 ATATAAATATAA
* * * *
7133 AAAAAAT-ATAA-ATAATAATAATAATAATAATATATATAAATTAGATA-ATATAAATATATAAT
1 AAAAAATAATAATATAATATTAAT-ATAATAA-A-ATA-AAA-TAAATATAAATAAAAATAT-AT
*
7195 AAAAATTAATAA
60 ATAAA-T-ATAA
* * * *
7207 ATAAAAATATATAA-ATAATA-TAATATTAA-AAAA-AAATTTAATA-ATATATAAAATAATTTA
1 A-AAAAATA-ATAATATAATATTAATA-TAATAAAATAAAATAAATATAAATA-AAAAT-ATATA
* *
7267 TAAAAATTA
61 TAAATATAA
* * * * *
7276 TAAAAA-AATAAT-TAATA-TAAAATTAA-AAAATTAAATTAAAT-TATAAT-ATAGTA-ACTAT
1 AAAAAATAATAATATAATATTAATA-TAATAAAA-TAAAATAAATATA-AATAAAAATATA-TAT
7334 AAAT-TAA
62 AAATATAA
* * * ** * *
7341 AAAAAATAAT-ATA-AATATATAAAAAAATATAATATTATAATTATAAAAATTAGTAAATATA-A
1 AAAAAATAATAATATAATAT-TAATATAATAAAATAAAATAA--ATATAAA-TA-AAAATATATA
7403 TATAATATTATA
61 TA-AATA-TA-A
* * * * * * *
7415 TAAAAA-ATAAAAAAAAATATT-ATTTAAT--AATAAATATTAAATATAAAT-TAATTA-ATATA
1 AAAAAATA-ATAATATAATATTAATATAATAAAATAAA-A-TAAATATAAATAAAAATATATATA
7474 AATAATAA
63 AAT-ATAA
* * * *
7482 TAAAAATTAA-AA-A-AATAATAATTATAA-AAAATTATAATATAATATAATATAAATAATTTAT
1 -AAAAAATAATAATATAATATTAA-TATAATAAAA-TAAAATA-AATATAA-ATAAA-AATATAT
7543 AT-AATA-AA
60 ATAAATATAA
* * * *
7551 TAATAAAAT-A-AATATTTATATT--TA-AAT-AAATAAATTAAA-ATAATTTTAAAATATTATA
1 -AA-AAAATAATAATA-TAATATTAATATAATAAAATAAAATAAATATAA-ATAAAAATA-TATA
*
7609 TATAATTTAA
61 TA-AATATAA
* * * *
7619 AAAATATAAAAATA-AATATTTAA-ATAATAAAAATAATAATAATATATAAA-AAATTATAATAA
1 AAAAAATAATAATATAATA-TTAATATAAT-AAAATAA-AATAA-ATATAAATAAA-AAT-ATAT
7681 ATAAATATTAA
60 ATAAATA-TAA
* * * * *
7692 AATAAA-AATTATATAATAATAAAATATTTAATAAATATTATTAATAAAT-TAATTAAAAATATA
1 AAAAAATAATAATATAAT-AT-TAATA--TAATAAA-A-TA-AAATAAATATAAATAAAAATATA
7755 TATATAAT-TAA
59 TATA-AATATAA
* * * * *
7766 TAATAAATAAATATTAT-ATATATAATA-AAT-AAATAATAT-AAT-TAAAAAAAAATTTA-AT-
1 -AAAAAAT-AATAATATAATAT-TAATATAATAAAATAAAATAAATATAAATAAAAATATATATA
7824 AATA-AA
63 AATATAA
* * ** * *
7830 TAAAATTAAATTAAT-T-ATATT-ATATAAATATAAATTTAAT-AATAATAAATAATAATA-ATT
1 AAAAAAT-AA-TAATATAATATTAATAT-AATA-AAATAAAATAAAT-ATAAATAAAAATATATA
7890 TAAATA-AA
61 TAAATATAA
* * * * * * *
7898 AAAAATTAATAA-A-AATA-AAAAAT-ATAAAATTAAA-AAAT-TAAAT-TATATGTATA-AAAT
1 AAAAAATAATAATATAATATTAATATAATAAAATAAAATAAATATAAATAAAAATATATATAAAT
7955 ATAA
66 ATAA
** * *
7959 ATTAAAT-ATAATAT-AT-TTAA-AT-AT--AATAATAATAAATTATATATTAAAATA-ATA-AA
1 AAAAAATAATAATATAATATTAATATAATAAAATAA-AATAAA-TATAAATAAAAATATATATAA
8015 ATAATAA
64 AT-ATAA
* * * * * * * * * *
8022 TAATAAATTAATAA-ATTATATAAATAAAATTATA-AAAAT-TATTTATAT-AAAATATAAATAT
1 -AA-AAAATAATAATATAATATTAATATAATAAAATAAAATAAATATAAATAAAAATATATATA-
8083 AATATATA
63 AATATA-A
* * * **
8091 AAAATATAA-AATA-AATA-TAATATAATAATATTATTTAATATATATAATAAATTAAT-TAT-T
1 AAAAAATAATAATATAATATTAATATAATAAAATAAAATAA-ATATA-AATAAA--AATATATAT
*
8151 -AAT-T-T
62 AAATATAA
* * *
8156 AATAAATAATTAATATATTATT-ATATTATATAAAA-AAAAT-AATAT-TATATAAAAT-TATAT
1 AAAAAATAA-TAATATAATATTAATA-TA-ATAAAATAAAATAAATATAAATA-AAAATATATAT
8216 -AAT-T--
62 AAATATAA
* ** *
8220 --AATATAATAA-ATAATA-TAATATAATAAAATAAAAT-AATATAGTAATATTAATAAATAT-A
1 AAAAAATAATAATATAATATTAATATAATAAAATAAAATAAATATA--AATAAAAATATATATAA
*
8279 TTAT-A
64 ATATAA
* ** * *
8284 AAAAAATATTTAATATAA-AAAAATATAA-AAATTATAAATAATTA-AAATATAAAATA-ATAT-
1 AAAAAATA-ATAATATAATATTAATATAATAAAATA-AAATAAATATAAATA-AAAATATATATA
8344 AATAATTAA
63 AAT-A-TAA
* ** *
8353 AAATAA-AA-AAT-TAA-AAAAATATAA-AAAA-AAATTATAAATA-AAATAAAAATA-ATAAAA
1 AAAAAATAATAATATAATATTAATATAATAAAATAAA--ATAAATATAAATAAAAATATATATAA
* *
8410 AAAT-T
64 ATATAA
*
8415 AAAAAATAA-ATTAATAATATTAA-A-AATAAAAATATAAAT--ATATAAAT-AAAATAT-TAT-
1 AAAAAATAATAAT-ATAATATTAATATAAT-AAAATA-AAATAAATATAAATAAAAATATATATA
8472 -AT-TAA
63 AATATAA
* ** * ** *
8477 AAAAATTTAATTTTATAATATT-ATATAA-AATATATTATAAAT-T-AATAAATAATA-AAATAA
1 AAAAA-ATAATAATATAATATTAATATAATAAAATAAAATAAATATAAATAAA-AATATATATAA
* *
8537 TTATTTA
64 ATA-TAA
* * *
8544 TAATAATATATAATA-AA-A--AATATAA-ATAAATAAAATTAA-ATAAATATAAAATATA-AT-
1 AAAAAATA-ATAATATAATATTAATATAATA-AAATAAAATAAATATAAATA-AAAATATATATA
8601 AATA-AA
63 AATATAA
* * * *
8607 ACAAAATATATAATATAATAATGAT-TAAAAATATATAAAATAAAATATAAA
1 AAAAAATA-ATAATATAATATTAATATAATAA-A-ATAAAAT-AAATATAAA
8658 AATAATAAAA
Statistics
Matches: 1432, Mismatches: 255, Indels: 520
0.65 0.12 0.24
Matches are distributed among these distances:
58 10 0.01
59 15 0.01
60 26 0.02
61 34 0.02
62 46 0.03
63 73 0.05
64 65 0.05
65 133 0.09
66 144 0.10
67 167 0.12
68 172 0.12
69 105 0.07
70 59 0.04
71 63 0.04
72 77 0.05
73 53 0.04
74 66 0.05
75 52 0.04
76 37 0.03
77 28 0.02
78 7 0.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.35
Consensus pattern (69 bp):
AAAAAATAATAATATAATATTAATATAATAAAATAAAATAAATATAAATAAAAATATATATAAAT
ATAA
Found at i:6833 original size:108 final size:107
Alignment explanation
Indices: 6644--7040 Score: 301
Period size: 108 Copynumber: 3.7 Consensus size: 107
6634 TAATTATTAA
* * * *
6644 AAAATAATACAAATAATATATATAAATAAAAT-ATATTAT-ATATTATATAAAAATATATATAAA
1 AAAATAA-AAAAATAATAAATATAAA-AAAATAATAATATAATATTA-AT-ATAATA-ATATAAA
* *
6707 A-AAA-AAAAAGTAATAAATAAATTATTAATTAAAAAATAATAATAGAT
61 ATAAATATAAA-TAA-AAATAAATTATTAATTAAAAAATAATAATAAAT
*
6754 AAAATAAAAAAATTATAAATATAAAAAGAATAATAATATAATATTAATATAATAATATAAAATAA
1 AAAATAAAAAAATAATAAATATAAAAA-AATAATAATATAATATTAATATAATAATATAAAATAA
* *
6819 ATATAAATAAAAATATATTATT-ATATAATAAATAAT-ATAAAT
65 ATATAAATAAAAATAAATTATTAAT-TAAAAAATAATAATAAAT
* * * * * *
6861 ATATATATAAAAAAT-ATATATATTAAATAATAATAAATAAAATAATTAAT-T-ATAATAAAAAA
1 A-AAATA-AAAAAATAATAAATATAAAAAAATAAT-AATATAAT-ATTAATATAATAATATAAAA
* * * *
6923 TAAAATATATATATAAATATAA-TATAAATTAAAAAAAATATAATATAAT
62 T-AAATATAAATAAAAATA-AATTATTAATTAAAAAATA-ATAATA-AAT
* *
6972 AAAAATTAAAAAATAAT-AATATAATAAAAATAAT--TATATTATTAA-A-AATAA-AT-AAATA
1 -AAAATAAAAAAATAATAAATATAA-AAAAATAATAATATAATATTAATATAATAATATAAAATA
7030 AATA-AAA-AAAA
64 AATATAAATAAAA
7041 TTATAATATA
Statistics
Matches: 235, Mismatches: 31, Indels: 50
0.74 0.10 0.16
Matches are distributed among these distances:
102 3 0.01
103 2 0.01
104 5 0.02
105 4 0.02
106 1 0.00
107 34 0.14
108 82 0.35
109 47 0.20
110 34 0.14
111 22 0.09
112 1 0.00
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (107 bp):
AAAATAAAAAAATAATAAATATAAAAAAATAATAATATAATATTAATATAATAATATAAAATAAA
TATAAATAAAAATAAATTATTAATTAAAAAATAATAATAAAT
Found at i:7086 original size:56 final size:56
Alignment explanation
Indices: 6964--7115 Score: 150
Period size: 56 Copynumber: 2.7 Consensus size: 56
6954 AAAAAAATAT
* * * *
6964 AATATAATAAAAATTAAAAAATAATAATATAATAAAAATAATTATATTATTAAAAATA
1 AATATAATAAATA-AAAAAAATTATAATATAA-ATAAATAATTATATTATTAAAAATA
* *
7022 AATA-AATAAATAAAAAAAATTATAATATAAATTAATATTTATATTA-T-AAAATGA
1 AATATAATAAATAAAAAAAATTATAATATAAATAAATAATTATATTATTAAAAAT-A
* * *
7076 ATATATAATAAATATAATAAAA-TATATTATAAATATATAA
1 A-ATATAATAAATA-AAAAAAATTATAATATAAATAAATAA
7116 AAAATATTTA
Statistics
Matches: 79, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
53 5 0.06
54 3 0.04
55 16 0.20
56 38 0.48
57 13 0.16
58 4 0.05
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (56 bp):
AATATAATAAATAAAAAAAATTATAATATAAATAAATAATTATATTATTAAAAATA
Found at i:7210 original size:17 final size:16
Alignment explanation
Indices: 1237--8687 Score: 486
Period size: 16 Copynumber: 459.4 Consensus size: 16
1227 ATAAAATTAT
*
1237 AAAATAAT-TATAATA
1 AAAATAATAAATAATA
*
1252 AAAATAATTATATAATTA
1 AAAATAA-TAAATAA-TA
*
1270 ATAATATATAATTATAA-A
1 AAAATA-ATAA--ATAATA
1288 AAAATAATAAATGAAATA
1 AAAATAATAAAT--AATA
*
1306 AAAATAATATA-AATA
1 AAAATAATAAATAATA
*
1321 AAATTATATAAATAAT-
1 AAAATA-ATAAATAATA
*
1337 AAAATAATATA-AAT-
1 AAAATAATAAATAATA
* *
1351 ATAATTATAAA-AATA
1 AAAATAATAAATAATA
*
1366 AAAATTAAATAAAT-TTA
1 AAAA-T-AATAAATAATA
* *
1383 AATATAAT-AATAAAA
1 AAAATAATAAATAATA
*
1398 AAAATAATAAAAAATA
1 AAAATAATAAATAATA
* *
1414 TATATAA-AAATAA-A
1 AAAATAATAAATAATA
1428 TAAAATAAATAAAT-ATA
1 -AAAAT-AATAAATAATA
*
1445 AAAATATATAAAT-ATT
1 AAAATA-ATAAATAATA
*
1461 ATAATAATATAA-AATA
1 AAAATAATA-AATAATA
* *
1477 TAAAAGAATATA-AATA
1 -AAAATAATAAATAATA
*
1493 TAAATAATTAAAGT-ATA
1 AAAATAA-TAAA-TAATA
1510 ATATAATAATAAATAATA
1 A-A-AATAATAAATAATA
*
1528 AAAA-AATTAAAAAATTA
1 AAAATAA-TAAATAA-TA
* ** *
1545 TATTTGATAAATAAATA
1 AAAATAATAAAT-AATA
*
1562 TAAATTAAT-AATAA-A
1 -AAAATAATAAATAATA
1577 AAAA-AATATAA-AAT-
1 AAAATAATA-AATAATA
* * **
1591 TAAATTATAAATTTTA
1 AAAATAATAAATAATA
*
1607 AGAAT-A-AAAT-A-A
1 AAAATAATAAATAATA
* * * *
1619 ATAATTATTAAT-TTA
1 AAAATAATAAATAATA
* *
1634 AAATATTTTAATATATAATT
1 AAA-A---TAATAAATAATA
*
1654 AAAAT--TATATAAT-
1 AAAATAATAAATAATA
* ** *
1667 ATAATTTTATAATATTA
1 AAAATAATA-AATAATA
**
1684 AAAATTTTAATATAAATA
1 AAAATAATAA-AT-AATA
*
1702 AAATAAAATAAATAAT-
1 AAA-ATAATAAATAATA
*
1718 AATAT-ATAAATTTTAA-A
1 AAAATAATAAA---TAATA
*** **
1735 AAAATAATTTTTCTTA
1 AAAATAATAAATAATA
* *
1751 AAAAT-ATTAATAATTT
1 AAAATAATAAATAA-TA
**
1767 TTAATAAT-AATAATA
1 AAAATAATAAATAATA
**
1782 TAAAATTATATTTATAAATA
1 -AAAA-TA-ATAAAT-AATA
1802 AAAAT-A-AAAT-ATA
1 AAAATAATAAATAATA
* *
1815 AAAATTATAAATAATT
1 AAAATAATAAATAATA
* *
1831 AAATTAATTAATAATA
1 AAAATAATAAATAATA
* *
1847 TAATTAA-AAA-AATA
1 AAAATAATAAATAATA
*
1861 ATATATAATAAATAATA
1 A-AAATAATAAATAATA
1878 ATAAAT-ATAAAT-ATA
1 A-AAATAATAAATAATA
* * *
1893 TAATTAAT-AATTA-A
1 AAAATAATAAATAATA
1907 AAAATAATAAA-AAT-
1 AAAATAATAAATAATA
*
1921 TAAA-AATAAAT--TA
1 AAAATAATAAATAATA
1934 AAAA-AATAAATAA-A
1 AAAATAATAAATAATA
* * *
1948 AATATAATTACTAAATA
1 AAAATAATAAAT-AATA
* * *
1965 AAAATGATTATTAA-A
1 AAAATAATAAATAATA
*
1980 AAAA-AATTAA-AATA
1 AAAATAATAAATAATA
* * * * *
1994 ATTATTAATTATTAATTT
1 A-AAATAATAAATAA-TA
* *
2012 AAATTATTAAATAAATA
1 AAAATAATAAAT-AATA
2029 AAAATAGAATTAATATAA-A
1 AAAAT--AA-TAA-ATAATA
*
2048 AAAATTAA-AATTATATA
1 AAAA-TAATAAATA-ATA
*
2065 AAAA-AA-AATTATATA
1 AAAATAATAAATA-ATA
2080 AAAATAATAAATAAT-
1 AAAATAATAAATAATA
***
2095 TTCAT-ATAAATAA-A
1 AAAATAATAAATAATA
*
2109 AATAAGTATATAAAAAAT-
1 AA-AA-TA-ATAAATAATA
2127 AAAA-AATAAATATATA
1 AAAATAATAAATA-ATA
*
2143 AAAAAAATAAA-AATA
1 AAAATAATAAATAATA
2158 AATAA-AA-AAATAATA
1 AA-AATAATAAATAATA
* *
2173 ATTAAT-TTAAAT-AT-
1 A-AAATAATAAATAATA
2187 AAAAT--TAAATATATA
1 AAAATAATAAATA-ATA
*
2202 TAAAATTATAAATAA-A
1 -AAAATAATAAATAATA
* * **
2218 AATATAAAATAATTTTA
1 AAAATAATA-AATAATA
* *
2235 TAAAT--TAAATTATA
1 AAAATAATAAATAATA
*
2249 AAAA-AAT-AATAAAAA
1 AAAATAATAAAT-AATA
*
2264 AAAATAAAAAATTAATGA
1 AAAATAATAAA-TAAT-A
* *
2282 AATATTATTAAATAATA
1 AA-AATAATAAATAATA
* *
2299 ATATATAATATATAATA
1 A-AAATAATAAATAATA
*
2316 ATTAAAT-ATAAAAGTTATA
1 A--AAATAAT-AAA-TAATA
* *
2335 ATAAATTATTAAT-ATA
1 A-AAATAATAAATAATA
*
2351 ATAA-AATAAATATATA
1 AAAATAATAAATA-ATA
2367 AATTAA-AATAATATAA-A
1 AA--AATAATAA-ATAATA
*
2384 AAAATAATAATTAAATA
1 AAAATAATAAAT-AATA
2401 AATAATTAATAAAT--TA
1 AA-AA-TAATAAATAATA
* *
2417 AATATAAAAAATAATA
1 AAAATAATAAATAATA
*
2433 TAAATAAATAAATAATA
1 AAAAT-AATAAATAATA
*
2450 TAAATAATATATATAATTA
1 AAAATAATA-A-ATAA-TA
2469 AAAATAAT-AATAAATA
1 AAAATAATAAAT-AATA
* *
2485 ATAATATTATAAATATTA
1 A-AA-ATAATAAATAATA
** *
2503 TATTATATATAAATATTA
1 -AAAATA-ATAAATAATA
2521 AAAA-AAT-AA-AAT-
1 AAAATAATAAATAATA
** *
2533 ATTATATTAAATTAATA
1 AAAATAATAAA-TAATA
2550 AAAA-AA-AAAT--TA
1 AAAATAATAAATAATA
* *
2562 AAATTAATATAA-ATTA
1 AAAATAATA-AATAATA
2578 AAAATAAT-AAT--TA
1 AAAATAATAAATAATA
*
2591 AAAATTATTAATATAATA
1 AAAA-TAATAA-ATAATA
*
2609 AAAA-AA-AATTAAATA
1 AAAATAATAAAT-AATA
** *
2624 TTAATAATAATTAATA
1 AAAATAATAAATAATA
*
2640 TAAAAT-ATATATTATATA
1 -AAAATAATA-AATA-ATA
*
2658 TAAATAATAAATAAATA
1 AAAATAATAAAT-AATA
** * * * *
2675 TCATTATTTATTAATA
1 AAAATAATAAATAATA
2691 ATAAATATATAATATAATTA
1 A-AAATA-ATAA-ATAA-TA
*
2711 AATAA-ATTAAATAATTA
1 AA-AATAATAAATAA-TA
2728 AATAA-AATAAA-AAT-
1 AA-AATAATAAATAATA
*
2742 ATAATAAATAAATAA-A
1 AAAAT-AATAAATAATA
2758 AAACATTAATAATATAATA
1 AAA-A-TAATAA-ATAATA
2777 AAATATAATAAAATAATA
1 AAA-ATAAT-AAATAATA
2795 AAAATAATATAATAAT-
1 AAAATAATA-AATAATA
*
2811 AATATAA-AAATAATA
1 AAAATAATAAATAATA
** *
2826 TTAATAAAAAATAATAA
1 AAAATAATAAATAAT-A
*
2843 ATAAATAAATAAATTATTA
1 A-AAAT-AATAAA-TAATA
2862 AAAATAA-AAATAATAA
1 AAAATAATAAATAAT-A
2878 AAAATAAATTAATATAATA
1 AAAAT-AA-TAA-ATAATA
*
2897 AAATATTATTATAAA-AAAA
1 AAA-A-TA--ATAAATAATA
*
2916 AAAATAA-AATTATATA
1 AAAATAATAAATA-ATA
*
2932 ATAAA-AATAAGTAATA
1 A-AAATAATAAATAATA
* *
2948 AATA-AATAAA-AATT
1 AAAATAATAAATAATA
**
2962 AAAATCTTAAA-AATA
1 AAAATAATAAATAATA
* * *
2977 AATAATATTATATTTATA
1 AA-AATAATA-AATAATA
*
2995 AAAAT-ATAATTAATA
1 AAAATAATAAATAATA
*
3010 ATTATATAATAAA-AATA
1 A--AAATAATAAATAATA
3027 AATTAA-AATAAAT--T-
1 AA--AATAATAAATAATA
* * * *
3041 AATATTATTAAT-TTA
1 AAAATAATAAATAATA
*
3056 AAAAT-ATATATAAT-
1 AAAATAATAAATAATA
* *
3070 AATATATTAAATTATATA
1 AAAATAATAAA-TA-ATA
3088 AAAA-AAT-AA-AATA
1 AAAATAATAAATAATA
*
3101 AAAATATATAAAAAATA
1 AAAATA-ATAAATAATA
*
3118 AAAAT-AT--ATAATTC
1 AAAATAATAAATAA-TA
* *
3132 AAAATTATTAA-AATA
1 AAAATAATAAATAATA
*
3147 AATATAAT--ATAAT-
1 AAAATAATAAATAATA
*
3160 ATAATAATAAATAATA
1 AAAATAATAAATAATA
* *
3176 TAATTAA-AATTAAGAATA
1 -AA--AATAATAAATAATA
* *
3194 AAAATTA-AAATAAAA
1 AAAATAATAAATAATA
*
3209 AAAATATATTATATAATA
1 AAAATA-A-TAAATAATA
*** *
3227 ATTTTAATTAA-AAT-
1 AAAATAATAAATAATA
* *
3241 ATAAT-ATATAATTATA
1 AAAATAATA-AATAATA
3257 AAAATAA-AAAT--TA
1 AAAATAATAAATAATA
* *
3270 ATAATTAATAAATATTA
1 A-AAATAATAAATAATA
* *
3287 AAAA-AAAATAATATATT
1 AAAATAATA-AATA-ATA
* * *
3304 ATATTAA-AAATTAAAA
1 AAAATAATAAA-TAATA
* * *
3320 AAAAAAATTAA-AATT
1 AAAATAATAAATAATA
* * *
3335 AAAATAAAAAAAAAAA
1 AAAATAATAAATAATA
3351 AAATATAATAAAT-ATA
1 AAA-ATAATAAATAATA
* * *
3367 AAATTAA-ATATAATTT
1 AAAATAATAAATAA-TA
*
3383 AAAA-AAT-AATTATA
1 AAAATAATAAATAATA
* * *
3397 TATATCA-AAATAATTA
1 AAAATAATAAATAA-TA
* ** *
3413 TAAATTTTAAAAAAT-
1 AAAATAATAAATAATA
3428 AAAATAAATAAAATTAATA
1 AAAAT-AAT-AAA-TAATA
** * *
3447 TTAATAAAAAAAAATA
1 AAAATAATAAATAATA
3463 AAATATTAATTAATATAATA
1 AAA-A-TAA-TAA-ATAATA
* *
3483 TAAAATTATTAAAAAAT-
1 -AAAA-TAATAAATAATA
*
3500 AAAATTATATAA-AATA
1 AAAATAATA-AATAATA
** * *
3516 ATCATTATATAT-ATA
1 AAAATAATAAATAATA
*
3531 AATATATTATAAATAATA
1 AA-A-ATAATAAATAATA
3549 AAAATAATATAATAA-A
1 AAAATAATA-AATAATA
* *
3565 TAAAATATATATTATAAAA
1 -AAAATA-ATA-AATAATA
*
3584 AAAATAAAATAAAAAAT-
1 AAAAT--AATAAATAATA
* *
3601 AAAATAATATATAATTT
1 AAAATAATAAATAA-TA
* * * *
3618 ATAAT-TTTAATAAAA
1 AAAATAATAAATAATA
* *
3633 AAAATAATATAT-ATT
1 AAAATAATAAATAATA
*
3648 TAAATAAATAATATCAA-A
1 AAAAT-AATAA-AT-AATA
* **
3666 TAAATTTTAAAT-ATA
1 AAAATAATAAATAATA
*
3681 AATA-AATATAATAATA
1 AAAATAATA-AATAATA
*
3697 ATAAATATATAAAT-TTA
1 A-AAATA-ATAAATAATA
**
3714 ATTAT-ATAAAATAATA
1 AAAATAAT-AAATAATA
** * *
3730 TTATTATATAAAAAATA
1 AAAATA-ATAAATAATA
* *
3747 AATATAATATAAATATATT
1 AAAAT-A-ATAAATA-ATA
3766 AAAATATATATAATAATA
1 AAAATA-ATA-AATAATA
* *
3784 AAAA-AA-AAAAAAAA
1 AAAATAATAAATAATA
*
3798 ATAAATTACTAAATTATATA
1 A-AAA-TAATAAA-TA-ATA
* *
3818 TAAA-AATAAACAAGTA
1 AAAATAATAAATAA-TA
* *
3834 ATAATTATAAATAA-A
1 AAAATAATAAATAATA
* * *
3849 AATATAAAAAAATTATA
1 AAAAT-AATAAATAATA
* *
3866 TAAATAAAAAAT-ATA
1 AAAATAATAAATAATA
3881 AAAA-AATAAATAATA
1 AAAATAATAAATAATA
* * * *
3896 ATGTAATAATTAGTTATA
1 A--AAATAATAAATAATA
3914 TAAAAT-ATAAA-AATA
1 -AAAATAATAAATAATA
**
3929 ATATTTAA-AAATAATAA
1 A-AAATAATAAATAAT-A
3946 ATTAAATAATAAA-AATA
1 A--AAATAATAAATAATA
*
3963 AATATAATAAATAAATTAA
1 AAAATAATAAAT-AA-T-A
3982 AAAATTTAATATAA-AATA
1 AAAA--TAATA-AATAATA
*
4000 AAAATAAATAAA-ATTA
1 AAAAT-AATAAATAATA
*
4016 AATATAAATAAAT-AT-
1 AAAAT-AATAAATAATA
*
4031 AAAATATTAATATAATTA
1 AAAATAATAA-ATAA-TA
** *
4049 ATTATAATAAAATATTA
1 AAAATAAT-AAATAATA
*
4066 ATTTAATATATAAAATTAATTTA
1 A--AAATA-AT-AAA-TAA--TA
* * *
4089 ATATTATTTAAA-AATA
1 AAAATA-ATAAATAATA
4105 TAAAATAA-AAA-AATA
1 -AAAATAATAAATAATA
* * *
4120 TAAAATAA-ATATATTTT
1 -AAAATAATAAATA-ATA
4137 AAAAT-AT-AA-AATA
1 AAAATAATAAATAATA
4150 AAATATATATAATATAA-A
1 AAA-ATA-ATAA-ATAATA
**
4168 AAAATAA-AAATTTTA
1 AAAATAATAAATAATA
*
4183 AAAAT--TTAATATATA
1 AAAATAATAAATA-ATA
* * *
4198 GAATATTATAAAAAAATA
1 -AAAATAAT-AAATAATA
4216 TAAAA-AATAAATAA-A
1 -AAAATAATAAATAATA
* *
4231 AATATAAAAATATATATTA
1 AAAATAATAA-ATA-A-TA
4250 AAATATTAAATAAATATATA
1 AAA-A-T-AATAAATA-ATA
*
4270 TAAATAA-AAATAATA
1 AAAATAATAAATAATA
*
4285 AATAATAATATAATTATA
1 AA-AATAATA-AATAATA
*
4303 AATATAATAAATAA-A
1 AAAATAATAAATAATA
* * *
4318 TATATAATAAATTATAA
1 AAAATAATAAATAAT-A
* **
4335 ACAAAAAATTTATATATA
1 A-AAATAATAAATA-ATA
*
4353 AAAATAATATA-AATA
1 AAAATAATAAATAATA
*
4368 AATATATATAAA-AA-A
1 AAAATA-ATAAATAATA
* *
4383 AAATTAAAAAATAAT-
1 AAAATAATAAATAATA
* * *
4398 TATATAA-AAATATAAA
1 AAAATAATAAATA-ATA
4414 AAAATAATATAATAAATA
1 AAAATAATA-AAT-AATA
* * *
4432 AAATTAA-AATCTTATAA
1 AAAATAATAA-ATAAT-A
* *
4449 AAAAAAAAAAATAATA
1 AAAATAATAAATAATA
*
4465 ATATATTAATATAATAATA
1 A-A-AATAATA-AATAATA
*
4484 ATAAATTAA-ATATAATA
1 A-AAA-TAATAAATAATA
4501 AAAA-AATAATATAATA
1 AAAATAATAA-ATAATA
*
4517 AAAAT-ATTAAT-ATA
1 AAAATAATAAATAATA
* * * *
4531 AAATTATATTATTAATT
1 AAAATA-ATAAATAATA
* *
4548 AATATAATTAAATTATA
1 AAAATAA-TAAATAATA
*
4565 TAAA-AA-AAATAATTA
1 AAAATAATAAATAA-TA
4580 AAAAT-ATAAAT-ATA
1 AAAATAATAAATAATA
* *
4594 ATAAA-AAAAAATATTA
1 A-AAATAATAAATAATA
* * *
4610 AAAATATTATAT-ATT
1 AAAATAATAAATAATA
* * *
4625 AATATTAT-TATAATA
1 AAAATAATAAATAATA
* *
4640 TAAATTAAT-TATAA-A
1 -AAAATAATAAATAATA
* *
4655 TAAAT-ATATAATATTA
1 AAAATAATA-AATAATA
4671 AAAATATATAAAT--T-
1 AAAATA-ATAAATAATA
4685 -AAATAATATAAT-ATA
1 AAAATAATA-AATAATA
4700 AAAATACATAAATAA-A
1 AAAATA-ATAAATAATA
* * *
4716 AAATTAAAAGAAAAATA
1 AAAATAATA-AATAATA
* *
4733 AAATTATTATAATAA-A
1 AAAATAATA-AATAATA
*
4749 AAAAT-ATTAATAATA
1 AAAATAATAAATAATA
*
4764 TTTAAAAAAATAATATAA-A
1 ---AAAATAATAA-ATAATA
*
4783 AAATTTAATAAATAA-A
1 AAA-ATAATAAATAATA
*
4799 AATATATATTAAAT--TA
1 AA-A-ATAATAAATAATA
4815 AAAA-AATTAAATATATA
1 AAAATAA-TAAATA-ATA
*
4832 TATAATAATTAAAATAATAA
1 -AAAATAA-T-AAATAAT-A
4852 AAAATAA-AAATTAATA
1 AAAATAATAAA-TAATA
4868 AAAGATAAT-AATAAATTA
1 AAA-ATAATAAAT-AA-TA
*
4886 AAAA-AAT-TAT-ATA
1 AAAATAATAAATAATA
*
4899 ATAAT-ATAAAT-ATA
1 AAAATAATAAATAATA
*
4913 AAAATATATTATATAATA
1 AAAATA-A-TAAATAATA
*
4931 ATAATAATTAAAT--TA
1 AAAATAA-TAAATAATA
* * *
4946 TATA-AATAAATATTA
1 AAAATAATAAATAATA
* *
4961 TATATAAT--ATAAT-
1 AAAATAATAAATAATA
* *
4974 AAAAT-ATATATATTA
1 AAAATAATAAATAATA
*
4989 TAAAAT-ATAAATATTA
1 -AAAATAATAAATAATA
* * *
5005 AATATAATTAATAACA
1 AAAATAATAAATAATA
* * * *
5021 TATAT-AT-ATTATTA
1 AAAATAATAAATAATA
* *
5035 TAAATAAATAAATATTTA
1 AAAAT-AATAAATA-ATA
*
5053 ATAAATAAT--ATTAT-
1 A-AAATAATAAATAATA
5067 AAAATAAATAAATATATA
1 AAAAT-AATAAATA-ATA
*
5085 TAAATAATAAAT-ATA
1 AAAATAATAAATAATA
5100 AAAATAAT-AATAA-A
1 AAAATAATAAATAATA
5114 AAAAT-AT-AATAATA
1 AAAATAATAAATAATA
* *
5128 ATAAAT-A-AAGTTA-A
1 A-AAATAATAAATAATA
*
5142 AAAATTATAAAT-A-A
1 AAAATAATAAATAATA
*
5156 AAAATAAATATATAATA
1 AAAAT-AATAAATAATA
5173 AATAA-AATAAAT-ATA
1 AA-AATAATAAATAATA
*
5188 TAAAA-AAT-CATAATAA
1 -AAAATAATAAATAAT-A
*
5204 AAAATAAATAATTAATA
1 AAAAT-AATAAATAATA
5221 TATAAA-AA-AAATAAT-
1 -A-AAATAATAAATAATA
*
5236 AAAATAA-AAATAAAA
1 AAAATAATAAATAATA
* *
5251 AAAAAAATTAA-AAT-
1 AAAATAATAAATAATA
*
5265 AAAATAATAATTAAT-
1 AAAATAATAAATAATA
* *
5280 TAAAT-ATTAA-AATA
1 AAAATAATAAATAATA
5294 TAAAATATATAAATAAATA
1 -AAAATA-ATAAAT-AATA
**
5313 AAAATAATTATTTAATTA
1 AAAATAA-TAAATAA-TA
* *
5331 TAATATAAAAAAT-ATA
1 -AAAATAATAAATAATA
*
5347 AAAATATATATATTTTATTATA
1 AAAATA-ATA-A----ATAATA
5369 AAAATAAAATAAATATATA
1 AAAAT--AATAAATA-ATA
*
5388 TAAA-AATAAAT-AT-
1 AAAATAATAAATAATA
* *
5401 AATATATTAAAATAA-A
1 AAAATAAT-AAATAATA
* *
5417 ATAATAATAAAAATATTA
1 AAAATAAT--AAATAATA
*
5435 TAAAATAATTAATAATA
1 -AAAATAATAAATAATA
*
5452 TAAATAATAAATATCTATA
1 AAAATAATAAATA---ATA
* *
5471 AAATAAAATAAAAAATTA
1 AAA-ATAATAAATAA-TA
** *
5489 AAAATAATTTATAAAA
1 AAAATAATAAATAATA
5505 AAAAT-A-AAATAAT-
1 AAAATAATAAATAATA
*
5518 AAATTAATATAATAATA
1 AAAATAATA-AATAATA
** *
5535 AATTTAACATAATAATAA
1 AAAATAATA-AATAAT-A
* *
5553 AAAATTATATATAAATTA
1 AAAATAATAAAT-AA-TA
*
5571 CAAAT-A-AAAT-ATA
1 AAAATAATAAATAATA
*
5584 AATATAATAAA-AATA
1 AAAATAATAAATAATA
* *
5599 AATAATATAAAAATATTAA
1 AA-AATA-ATAAATAAT-A
* * *
5618 AAAAAAATTTAATTATA
1 AAAATAA-TAAATAATA
* *
5635 AATTATATTAAATAAT-
1 AA-AATAATAAATAATA
* * *
5651 -AATTTAGAAATAATA
1 AAAATAATAAATAATA
* * * *
5666 TTATATATTATATATATAA
1 -AAAATAATAAATA-AT-A
5685 AAAATAATTAAAATAAATA
1 AAAATAA-T-AAAT-AATA
* * *
5704 AATATAATTTAAT-ATT
1 AAAATAA-TAAATAATA
*
5720 AAAAT-ATAAATTATA
1 AAAATAATAAATAATA
5735 ATAAATATATAAATAAATA
1 A-AAATA-ATAAAT-AATA
*
5754 GAATAA-AATTATTATAATA
1 -AA-AATAA-TA-AATAATA
5773 AAAATAAATAAATAA-A
1 AAAAT-AATAAATAATA
**
5789 ATTATAAT-AA-AAT-
1 AAAATAATAAATAATA
5802 AAAATAAATAAATAAT-
1 AAAAT-AATAAATAATA
*
5818 -ATA-AATAAATAAT-
1 AAAATAATAAATAATA
*
5831 AAAA-AATAAATTATAA
1 AAAATAATAAATAAT-A
* *
5847 AAAAAATATAAAAAATA
1 AAAATA-ATAAATAATA
* *
5864 AATATAAT-ATTATATAA
1 AAAATAATAAATA-AT-A
5881 AAAATAATTAAATTAA-A
1 AAAATAA-TAAA-TAATA
*
5898 AAAATTA-AAAT-ATA
1 AAAATAATAAATAATA
5912 AAAATATATAAATAAT-
1 AAAATA-ATAAATAATA
** * *
5928 ATTATATTTAATAATA
1 AAAATAATAAATAATA
5944 AATATTTATAATAAATAATA
1 AA-A---ATAATAAATAATA
* *
5964 AAAATAAAGTTAATTATA
1 AAAAT-AA-TAAATAATA
*
5982 AAATTAAATATAATTTAATA
1 AAAAT-AATA-AA--TAATA
*
6002 AAAAT-ATAATTAATTTTA
1 AAAATAATAAATAA---TA
* * * *
6020 AATATATTAATATTATT
1 AAAATAATAA-ATAATA
6037 AAAA-AAT-AATAATA
1 AAAATAATAAATAATA
*
6051 AAAATATTAAAATTAATA
1 AAAATAAT-AAA-TAATA
*
6069 TAATATAATTAAAATAATAA
1 -AAAATAA-T-AAATAAT-A
* *
6089 TAAAATATGTAAA-ATATT
1 -AAAATA-ATAAATA-ATA
6107 AAAA-AATAAATAATA
1 AAAATAATAAATAATA
**
6122 AATTTAAATATAA-AA-A
1 AAAAT-AATA-AATAATA
*
6138 AAAATAA-AAATATTA
1 AAAATAATAAATAATA
* *
6153 TAAATAATATATATATA
1 AAAATAATAAATA-ATA
**
6170 AATTTAAT-AATAA-A
1 AAAATAATAAATAATA
*
6184 TAAATAATTAAAT--TA
1 AAAATAA-TAAATAATA
* * *
6199 AATATAA-AATTAATT
1 AAAATAATAAATAATA
*
6214 AAAA-AAT--ATAAAA
1 AAAATAATAAATAATA
*
6227 AAAATAATAATATAATT
1 AAAATAATAA-ATAATA
* *
6244 TAAATAAATATTATAATA
1 AAAAT-AATA-AATAATA
* *
6262 ATAATTATAAAATTAAATA
1 AAAATAAT-AAA-T-AATA
*
6281 AAAATTAAT-AATTATA
1 AAAA-TAATAAATAATA
***
6297 TTTATATATAAAATAA-A
1 AAAATA-AT-AAATAATA
* *
6314 ATAATAATAATTTAATTA
1 AAAATAATAA-ATAA-TA
*
6332 ATAAATCAATATATTAAATA
1 A-AAAT-AATA-AAT-AATA
** **
6352 AAAATTTTTCAT-AT-
1 AAAATAATAAATAATA
* *
6366 TAAATAATTAAT-ATA
1 AAAATAATAAATAATA
* *
6381 CATAAAT-ATCATTAATA
1 -A-AAATAATAAATAATA
* *
6398 ATATTATATAAAATAATA
1 AAAATA-AT-AAATAATA
* *
6416 TTAAAAT-ATAATATATTT
1 --AAAATAATAA-ATAATA
6434 AAAA-AATAAATAATTA
1 AAAATAATAAATAA-TA
6450 AATAATAA-AATATAA-A
1 AA-AATAATAA-ATAATA
*
6466 AAATATAATAAATTATA
1 AAA-ATAATAAATAATA
*
6483 AATATAA-AAATAAATA
1 AAAATAATAAAT-AATA
*
6499 TAAAAT-ATAATTAATTA
1 -AAAATAATAAATAA-TA
6516 AAAATAAATAAAT-ATA
1 AAAAT-AATAAATAATA
* *
6532 ATAAT--TAAATATTA
1 AAAATAATAAATAATA
* *
6546 AAATTAATAATTAATTA
1 AAAATAATAAATAA-TA
*
6563 ATATATAATTAAATTTAAATTA
1 A-AAATAA-TAAA--T-AA-TA
*
6585 AATAAT-ATAATTTTAAT-
1 AA-AATAATAA--ATAATA
6602 AAAATAATTATAATTAA-A
1 AAAATAA-TA-AA-TAATA
*
6620 AAAATAATAGAAT-TTA
1 AAAATAATA-AATAATA
* * *
6636 ATTATTAAAAAATAATA
1 A-AAATAATAAATAATA
*
6653 CAAATAATATATATAAATA
1 AAAATAATA-A-AT-AATA
*
6672 AAATATATTATATATTATATAA
1 AAA-ATA--ATA-AATA-AT-A
* *
6694 AAATATATATAAAAAAAA
1 AAA-ATA-ATAAATAATA
6712 AAAAGTAATAAATAA-A
1 AAAA-TAATAAATAATA
** * *
6728 TTATTAATTAAAAAATA
1 AAAATAA-TAAATAATA
*
6745 ATAATAGATAAAATAA-A
1 AAAATA-AT-AAATAATA
*
6762 AAAATTATAAAT-ATA
1 AAAATAATAAATAATA
*
6777 AAAAGAAT-AATAATA
1 AAAATAATAAATAATA
*
6792 TAATATTAATATAATAATA
1 -AA-AATAATA-AATAATA
*
6811 TAAAATAA-ATATAAATA
1 -AAAATAATAAAT-AATA
* *
6828 AAAATATATTATTATATA
1 AAAATA-ATAAATA-ATA
*
6846 ATAAATAATATA-AATA
1 A-AAATAATAAATAATA
* * *
6862 TATAT-ATAAAAAATA
1 AAAATAATAAATAATA
* * *
6877 TATATATTAAATAATA
1 AAAATAATAAATAATA
6893 ATAAAT-A-AAATAATTA
1 A-AAATAATAAATAA-TA
** *
6909 ATTATAATAAAAAAT-
1 AAAATAATAAATAATA
*
6924 AAAAT-ATATAT-ATA
1 AAAATAATAAATAATA
* *
6938 AATATAATATAA-ATTA
1 AAAATAATA-AATAATA
*
6954 AAAA-AA-ATATAAT-
1 AAAATAATAAATAATA
* *
6967 ATAATAA-AAATTA-A
1 AAAATAATAAATAATA
6981 AAAATAATAATATAATA
1 AAAATAATAA-ATAATA
* *
6998 AAAATAATTATATTATTA
1 AAAATAA-TA-AATAATA
7016 AAAATAAATAAATAAATA
1 AAAAT-AATAAAT-AATA
* *
7034 AAAAAAAT-TATAATA
1 AAAATAATAAATAATA
* * *
7049 TAAATTAATATTTATATTA
1 -AAAATAATA--AATAATA
*
7068 TAAAATGAATATATAATA
1 -AAAAT-AATAAATAATA
*
7086 AATATAAT-AA-AAT-
1 AAAATAATAAATAATA
* *
7099 -ATATTATAAATATATAA
1 AAAATAATAAATA-AT-A
* **
7116 AAAATATTTAAATTTTTA
1 AAAATA-ATAAA-TAATA
7134 AAAA-ATATAAATAATA
1 AAAATA-ATAAATAATA
*
7150 ATAATAAT-AATAATA
1 AAAATAATAAATAATA
* * *
7165 TATATAAATTAGATAATA
1 AAAAT-AA-TAAATAATA
*
7183 TAAAT-AT--ATAATA
1 AAAATAATAAATAATA
7196 AAAATTAATAAATAA-A
1 AAAA-TAATAAATAATA
*
7212 AATAT-ATAAATAAT-
1 AAAATAATAAATAATA
* *
7226 ATAATATTAAA-AA-A
1 AAAATAATAAATAATA
*
7240 AAATTTAAT-AAT-ATA
1 AAA-ATAATAAATAATA
*
7255 TAAAATAAT---TTATA
1 -AAAATAATAAATAATA
7269 AAAAT--T--ATAA-A
1 AAAATAATAAATAATA
*
7280 AAAATAATTAAT-ATA
1 AAAATAATAAATAATA
* *
7295 AAATTAAAAAATTAAATTA
1 AAAATAATAAA-T-AA-TA
* *
7314 AATTATAATATAGTAACTA
1 AA-AATAATA-AATAA-TA
*
7333 TAAAT--TAAA-AA-A
1 AAAATAATAAATAATA
7345 AATAAT-ATAAATATATA
1 AA-AATAATAAATA-ATA
7362 AAAA-AATATAATATTATA
1 AAAATAATA-AATA--ATA
** *
7380 ATTATAA-AAATTAGTA
1 AAAATAATAAA-TAATA
*
7396 AATATAATATAATATTATA
1 AAAATAATA-AATA--ATA
7415 TAAAA-AAT-AA-AA-A
1 -AAAATAATAAATAATA
* **
7428 AAAATATTATTTAATA
1 AAAATAATAAATAATA
*
7444 ATAAATATTAAAT-AT-
1 A-AAATAATAAATAATA
* *
7459 AAATTAATTAAT-ATA
1 AAAATAATAAATAATA
7474 AATAATAATAAA-AATTA
1 AA-AATAATAAATAA-TA
*
7491 AAAA-AATAATAATTATAA
1 AAAATAAT-A-AATAAT-A
*
7509 AAAATTATAATATAAT-
1 AAAATAATAA-ATAATA
* *
7525 ATAAT-ATAAATAATT
1 AAAATAATAAATAATA
* *
7540 TATATAATAAATAAT-
1 AAAATAATAAATAATA
** *
7555 AAAATAAATATTTATATT
1 AAAAT-AATAAATA-ATA
*
7573 TAAATAAATAAATTAA-A
1 AAAAT-AATAAA-TAATA
* ** *
7590 ATAATTTTAAAATATTA
1 AAAATAAT-AAATAATA
* * *
7607 TATATAATTTAAAAAATA
1 AAAATAA--TAAATAATA
* *
7625 TAAA-AATAAAT-ATT
1 AAAATAATAAATAATA
*
7639 TAAATAATAAA-AATA
1 AAAATAATAAATAATA
* *
7654 ATAATAATATAT-A-A
1 AAAATAATAAATAATA
*
7668 AAAATTAT-AATAA-A
1 AAAATAATAAATAATA
* *
7682 TAAAT-ATTAA-AATA
1 AAAATAATAAATAATA
*
7696 AAAATTATATAATAAT-
1 AAAATAATA-AATAATA
* *
7712 AAAATATTTAATAAATA
1 AAAATAATAAAT-AATA
** *
7729 TTATTAATAAATTAATTA
1 AAAATAATAAA-TAA-TA
*
7747 AAAATATATATATAATTA
1 AAAATA-ATAAATAA-TA
*
7765 ATAATAAATAAATATTATA
1 AAAAT-AATAAATA--ATA
* *
7784 TATATAATAAATAA-A
1 AAAATAATAAATAATA
* *
7799 TAATATAATTAAA-AAAA
1 -AAAATAA-TAAATAATA
7816 AATTTAATAATAAATAA-A
1 AA---AATAATAAATAATA
* *
7834 ATTAAATTAATTATATTATA
1 A--AAA-TAA-TAAATAATA
* *
7854 TAAAT-ATAAAT-TTA
1 AAAATAATAAATAATA
*
7868 ATAATAATAAATAATA
1 AAAATAATAAATAATA
* * *
7884 ATAAT-TTAAATAAAA
1 AAAATAATAAATAATA
7899 AAAATTAATAAA-AATA
1 AAAA-TAATAAATAATA
*
7915 AAAA-ATATAAA-ATTA
1 AAAATA-ATAAATAATA
*
7930 AAAA-ATTAAATTATATGTA
1 AAAATAATAAA-TA-A--TA
7949 TAAAAT-ATAAAT--TA
1 -AAAATAATAAATAATA
* * *
7963 AATATAATATAT-TTA
1 AAAATAATAAATAATA
*
7978 AATATAAT-AATAATA
1 AAAATAATAAATAATA
*
7993 AATTATATATTAAAATAAT-
1 AA--A-ATAAT-AAATAATA
8012 AAAATAAT-AATAAT-
1 AAAATAATAAATAATA
* *
8026 AAATTAATAAATTATA
1 AAAATAATAAATAATA
* *
8042 TAAAT-A-AAATTATA
1 AAAATAATAAATAATA
* **
8056 AAAATTATTTAT-ATA
1 AAAATAATAAATAATA
8071 AAATATAAATATAATATATA
1 AAA-AT-AATA-AATA-ATA
8091 AAAAT-AT-AA-AATA
1 AAAATAATAAATAATA
*
8104 AATATAATATAATAATA
1 AAAATAATA-AATAATA
* **
8121 TTATTTAATATATATAATA
1 -AAAATAATA-A-ATAATA
* * *
8140 AATTAATTATTAAT-TTA
1 AA--AATAATAAATAATA
* *
8157 ATAAATAATTAATATATT
1 A-AAATAATAAATA-ATA
** * * *
8175 ATTATATTATATAAAA
1 AAAATAATAAATAATA
*
8191 AAAATAAT--ATTATA
1 AAAATAATAAATAATA
* *
8205 TAAAAT--TATATAATT
1 -AAAATAATAAATAATA
*
8220 AATATAATAAATAATA
1 AAAATAATAAATAATA
*
8236 TAATATAAT-AA-AAT-
1 -AAAATAATAAATAATA
*
8250 AAAATAATATAGTAATA
1 AAAATAATA-AATAATA
** * *
8267 TTAATAAATATATTATA
1 AAAAT-AATAAATAATA
**
8284 AAAA-AATATTTAATA
1 AAAATAATAAATAATA
* *
8299 TAAAAAAATATAAAAATTA
1 -AAAATAATA-AATAA-TA
* *
8318 TAAATAATTAA-AATA
1 AAAATAATAAATAATA
8333 TAAAATAATATAATAATTA
1 -AAAATAATA-AATAA-TA
*
8352 AAAATAA-AAA-ATTA
1 AAAATAATAAATAATA
8366 AAAA-AATATAA-AA-A
1 AAAATAATA-AATAATA
*
8380 AAAATTATAAATAAAATA
1 AAAATAATAAAT--AATA
* *
8398 AAAATAATAAAAAAATT
1 AAAATAAT-AAATAATA
8415 AAAA-AATAAAT--TA
1 AAAATAATAAATAATA
* *
8428 ATAATATTAAA-AATA
1 AAAATAATAAATAATA
8443 AAAAT-ATAAATATATA
1 AAAATAATAAATA-ATA
* *
8459 AATAA-AATATTATATTA
1 AA-AATAATA-AATAATA
* *
8476 AAAA-AATTTAATTTTATA
1 AAAATAA--TAA-ATAATA
* *
8494 ATATTATATAAAATATATTA
1 AAAATA-AT-AAATA-A-TA
*
8514 TAAATTAATAAATAAT-
1 -AAAATAATAAATAATA
* *
8530 AAAATAAT---TATTT
1 AAAATAATAAATAATA
* *
8543 ATAATAATATATAATA
1 AAAATAATAAATAATA
8559 AAAA-ATATAAATAAATA
1 AAAATA-ATAAAT-AATA
*
8576 AAATTAAATAAAT-AT-
1 AAAAT-AATAAATAATA
8591 AAAAT-AT-AATAATA
1 AAAATAATAAATAATA
* *
8605 AAACAAAATATATAAT-
1 AAA-ATAATAAATAATA
* *
8621 ATAATAAT-GAT--TA
1 AAAATAATAAATAATA
8634 AAAAT-ATATAA-AATA
1 AAAATAATA-AATAATA
8649 AAATATAA-AAATAATA
1 AAA-ATAATAAATAATA
8665 AAAA-AATAATATAATA
1 AAAATAATAA-ATAATA
*
8681 TAAATAA
1 AAAATAA
8688 ATAGCAATTT
Statistics
Matches: 5354, Mismatches: 1132, Indels: 1898
0.64 0.14 0.23
Matches are distributed among these distances:
11 7 0.00
12 47 0.01
13 249 0.05
14 614 0.11
15 931 0.17
16 1078 0.20
17 952 0.18
18 786 0.15
19 399 0.07
20 197 0.04
21 50 0.01
22 37 0.01
23 6 0.00
24 1 0.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AAAATAATAAATAATA
Found at i:7464 original size:146 final size:143
Alignment explanation
Indices: 7132--8121 Score: 377
Period size: 146 Copynumber: 6.7 Consensus size: 143
7122 TTTAAATTTT
* * *
7132 TAAAAAATATAAATAATAATAATAAT-AATAATATATATAAATTAGATAATATA-AATATATAA-
1 TAAAAAA-ATAATTAAT-ATAATAATAAATATTAAATATAAATTA-ATAATATATAATATA-AAT
* * *
7194 TAAAAATTAATAAATAAAAATATATAAATAATATAATATTA-AA-A-AAAAATTTAATAATATAT
62 TAAAAA-AAATAAATAAATATATA-AAAAAATATAATATTATAATATAAAAA-TTAATAATATAT
*
7256 AAAATAATTTATAAAAATTA
124 AAAATAATTTATAAAAATAA
*
7276 TAAAAAAATAATTAATATAA-AATTAAAAAATTAAAT-TAAATT-ATAATATAGTAACTATAAAT
1 TAAAAAAATAATTAATATAATAA-T-AAATATTAAATATAAATTAATAATATA-TAA-TATAAAT
*
7338 TAAAAAAAATAATATAAATATATAAAAAAATATAATATTATAATTATAAAAATTAGTAA-ATATA
62 TAAAAAAAATAA-ATAAATATATAAAAAAATATAATATTATAA-TATAAAAATTAATAATATATA
*
7402 ATATAATATTATATAAAA-AA
125 AAATAAT-TTATA-AAAATAA
* *
7422 TAAAAAAA-AATATTATTTAATAATAAATATTAAATATAAATTAATTAATATAAATAATAATAAA
1 TAAAAAAATAAT-TAATATAATAATAAATATTAAATATAAATTAA-TAATAT--ATAAT-AT--A
*
7486 AATT-AAAAAAAT-AAT-AAT-TATAAAAAATTATAATATAATATAATATAAATAATTTATATAA
59 AATTAAAAAAAATAAATAAATATATAAAAAAATATAATAT--TATAATATAAA-AA-TTA-ATAA
*
7547 TAAATAATAAAATAAATATTTATATTTAAATAAA
119 T--AT-ATAAAAT--A-ATTTATA--AAAAT-AA
* * *
7581 TAAATTAAAATAATTTTAAAATATTATATATAAT-TTAAAAAATATAAA--AATAAATATTTAA-
1 TAAA--AAAATAA--TTAATATAATA-ATA-AATATT---AAATATAAATTAAT-AATATATAAT
* * *
7642 AT-AA-TAAAAATAAT-AAT-AATATATAAAAAATTATAATAAATAAATATTAAAATAAAAATTA
56 ATAAATTAAAAAAAATAAATAAATATATAAAAAA--AT-AT-AAT-ATTA-TAATATAAAAATTA
* *
7703 TATAATA-ATAAAAT-ATTTAATAAATATTAT
115 -ATAATATATAAAATAATTT-ATAAA-AATAA
* * * * *
7733 TAATAAATTAATTAA-A-AATATATATATAATT-AATAATAAATAAATATTATAT-ATAT-AA-T
1 TAAAAAAATAATTAATATAATA-ATAAAT-ATTAAAT-ATAAATTAATAATATATAATATAAATT
* * * * *
7792 -AAATAAAT-AATATAAT-TAAAAAAAAATTTAATAATA-AATAAAATTAAATTAATTATATTAT
63 AAAAAAAATAAATA-AATATATAAAAAAATATAATATTATAATATAA--AAATTAA-TA-A-TAT
* *
7853 ATAAATATAAATT-TAATAATAA
122 ATAAA-ATAATTTATAAAAATAA
*
7875 TAAATAATAATAATTTAA-ATAA-AA-AAA-ATT-AATA-AAAATAA-AA-A-AT-ATA-AAATT
1 TAAA-AA-AATAA-TTAATATAATAATAAATATTAAATATAAATTAATAATATATAATATAAATT
* * * * * *
7929 -AAAAAATTAAAT-TATATGT-ATAAAATATAA-ATTA-AATATAATATATTTA-AATATAATAA
63 AAAAAAAATAAATAAATATATAAAAAAATATAATATTATAATATAA-AAATTAATAATAT-ATAA
7988 TAATAAATTATATATTAAAATAA
126 -AAT-AATT-TATA--AAAATAA
* * *
8011 TAAAATAATAA-TAATA-AATTAATAAATTATATAAATA-AAATT-ATAAAAATTATTTATATAA
1 TAAAAAAATAATTAATATAA-TAATAAA-TAT-TAAATATAAATTAAT-AATA-TA-TAATAT-A
* * * * *
8072 AATATAAATATAATATATAAAAATATAAAATAAATATAATATAATAATAT
59 AAT-TAAAAAAAATAAATAAATATATAAAA-AAATATAATATTATAATAT
8122 TATTTAATAT
Statistics
Matches: 656, Mismatches: 75, Indels: 220
0.69 0.08 0.23
Matches are distributed among these distances:
130 3 0.00
131 7 0.01
132 10 0.02
133 2 0.00
134 15 0.02
135 13 0.02
136 28 0.04
137 11 0.02
138 11 0.02
139 14 0.02
140 15 0.02
141 21 0.03
142 14 0.02
143 56 0.09
144 59 0.09
145 56 0.09
146 66 0.10
147 28 0.04
148 21 0.03
149 17 0.03
150 22 0.03
151 7 0.01
152 13 0.02
153 11 0.02
154 14 0.02
156 6 0.01
157 14 0.02
158 15 0.02
159 16 0.02
161 16 0.02
162 8 0.01
163 20 0.03
164 8 0.01
165 10 0.02
167 9 0.01
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (143 bp):
TAAAAAAATAATTAATATAATAATAAATATTAAATATAAATTAATAATATATAATATAAATTAAA
AAAAATAAATAAATATATAAAAAAATATAATATTATAATATAAAAATTAATAATATATAAAATAA
TTTATAAAAATAA
Found at i:7555 original size:84 final size:84
Alignment explanation
Indices: 7467--8398 Score: 213
Period size: 84 Copynumber: 10.7 Consensus size: 84
7457 ATAAATTAAT
7467 TAATATAAATAATAATAAAAATTAAAAAAATAATAATTATAAAAAATTATAATATAATATAATAT
1 TAATATAAATAATAATAAAAATTAAAAAAATAATAATTATAAAAAATTATAATATAATATAATAT
7532 AAATAATTTATATAATAAA
66 AAATAATTTATATAATAAA
* * * * * * *
7551 TAATA-AAATAAATATTTATATTTAAATAAAT-A-AATTA-AAATAATT-T--TA-AA-ATATTA
1 TAATATAAAT-AATAATAAAAATTAAAAAAATAATAATTATAAAAAATTATAATATAATATAATA
* * *
7607 TATATAATTTAAAAAATATAA
65 TAAATAATTTATATAATA-AA
*
7628 -AA-ATAAAT-AT-TTAAATAA-TAAAAATAATAATAATATATAAAAAATTATAATAAATAAATA
1 TAATATAAATAATAATAAA-AATTAAAAA-AATAATAAT-TATAAAAAATTATAAT--AT-AATA
*
7688 TTAAAATAAA-AATTATATAATAATAAAA
60 -TAATATAAATAATT-TAT-ATAAT-AAA
* *
7716 TATTTAATAAATATTATTAATAAATTAATTAAAAATATATATATAATTAATAATAAA-TA-AATA
1 TA-AT-ATAAATA--A-TAATAAA--AATTAAAAA-A-ATA-ATAATT-ATAAAAAATTATAATA
* * *
7779 TTATATATATAATAAATAAATAATATAATTAAAA
55 TAATATA-AT-ATAAATAATTTATATAA-T-AAA
* * * ** * *
7813 AAAAATTTAATAATAA-ATAAAATTAAATTAATTATATTATATAAATATAAATT-TAATAATAAT
1 TAATA-TAAATAATAATA-AAAATTAAAAAAATAATAAT-TAT-AA-A-AAATTATAAT-ATAAT
* *
7876 A-AATA-ATAATAATTTAAATAAAAAAAA
59 ATAATATA-AATAATTT--ATATAATAAA
* * * * * *
7903 TTAATAAAAATAAAAAATATAAAATTAAAAAATTAAATTATATGTATAAAA-TATAA-AT--TA-
1 -TAATATAAAT-AATAATA-AAAATTAAAAAAAT-AATAAT-TATAAAAAATTATAATATAATAT
7963 AATAT-AATATATTTAAATATAAT-AA
61 AATATAAATA-ATTT--ATATAATAAA
* * * * * * * *
7988 TAATA-AATTATATATTAAAATAATAAAATAATAATAATAAATTAATAAATTATATAAATAAAAT
1 TAATATAAATA-ATAATAAAA-ATTAAAAAAATAATAAT-TA-TAAAAAATTATA-ATATAATAT
* * *
8052 TATAAAAATTATTTATAT-A-AAA
61 AATATAAATAATTTATATAATAAA
*
8074 T-ATA-AATATAATATATAAAAATATAAAATAAAT-ATAA-TATAATAATATTATTTAATAT-AT
1 TAATATAA-ATAATA-ATAAAAAT-TAAAA-AAATAATAATTATAA-AAAATTA--TAATATAAT
* *
8134 ATAATA-AATTAATTATTAATTTAATAAA
59 ATAATATAAATAA-T-TT-ATATAATAAA
* * * * *
8162 TAAT-TAATATATTATTATATTATATAAAAAAAATAAT-ATTATATAAAATTAT-ATAATTAATA
1 TAATATAA-ATA--ATAATA-AAAATTAAAAAAATAATAATTATAAAAAATTATAAT-A-TAATA
* *
8224 TAATAAATAATATAATATAATAAAATAAAA
60 TAAT--ATAA-ATAAT-TTATATAAT-AAA
* * * *
8254 TAATATAGTAATATTAATAAATATATTATAAAAA-AATATTTAATATAAAA--A-AATATAA-A-
1 TAATATA--AATAATAATAAA-A-ATTAAAAAAATAATAATT-ATAAAAAATTATAATATAATAT
* *
8313 AATTATAAATAATTAAAAT-ATAAAA
61 AA-TATAAATAATTTATATAAT-AAA
* *
8338 TAATATAATAATTAAAAATAAAAAATTAAAAAAAT-ATAA--A-AAAAAATTATAA-ATAAAATA
1 TAATAT-A-AA-TAATAAT-AAAAATTAAAAAAATAATAATTATAAAAAATTATAATATAATATA
8398 A
62 A
8399 AAATAATAAA
Statistics
Matches: 626, Mismatches: 108, Indels: 228
0.65 0.11 0.24
Matches are distributed among these distances:
73 8 0.01
74 6 0.01
75 2 0.00
76 29 0.05
77 6 0.01
78 9 0.01
79 1 0.00
80 6 0.01
81 9 0.01
82 20 0.03
83 36 0.06
84 72 0.12
85 34 0.05
86 59 0.09
87 22 0.04
88 22 0.04
89 44 0.07
90 39 0.06
91 33 0.05
92 53 0.08
93 31 0.05
94 12 0.02
95 5 0.01
96 14 0.02
97 19 0.03
98 6 0.01
99 11 0.02
100 6 0.01
101 12 0.02
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (84 bp):
TAATATAAATAATAATAAAAATTAAAAAAATAATAATTATAAAAAATTATAATATAATATAATAT
AAATAATTTATATAATAAA
Found at i:8143 original size:113 final size:109
Alignment explanation
Indices: 7953--8349 Score: 320
Period size: 113 Copynumber: 3.5 Consensus size: 109
7943 TATGTATAAA
** ** * * * *
7953 ATATAAATTAAATATAATATATTTAAATATAATAATAATAAATTATATATTAAAATAATAAAATA
1 ATATAAAAAAAATATAATATATAAAAATATAA-AATAA-AAATAATATAATAATATAATATAATA
8018 ATAATAATAAATTAATAAATTATATAAATAAAATTATAAAAATTATTT
64 AT-ATAATAAATTAATAAATTATATAAAT-AAATTATAAAAATTATTT
* * *
8066 ATATAAAATATAAATATAATATATAAAAATATAAAATAAATATAATATAATAATATTATTTAATA
1 ATATAAAA-A-AAATATAATATATAAAAATATAAAATAAAAATAATATAATAATATAATATAATA
**
8131 TATATAATAAATTAATTATTAATT-TAATAAAT-AATTAATATATTATTATATT
64 -ATATAATAAATTAA-TA--AATTAT-ATAAATAAATT-ATA-AAAATTAT-TT
* * * * *
8183 ATATAAAAAAAATAATATTATATAAAATTATATAATTAATATAATA-AATAATATAATATAATAA
1 ATATAAAAAAAAT-ATAATATATAAAAATATAAAATAAAAATAATATAATAATATAATATAATAA
* * * * *
8247 AATAAAATAATATAGTAATATTA-ATAAATATATTATAAAAAAATATTT
65 TATAATA-AAT-TAATAA-ATTATATAAATAAATTAT-AAAAATTATTT
*
8295 A-ATATAAAAAAATATAAAAATTATAAATAAT-TAAAATATAAAATAATATAATAAT
1 ATATA-AAAAAAATAT-AATA-TATAAA-AATATAAAATA-AAAATAATATAATAAT
8350 TAAAAATAAA
Statistics
Matches: 229, Mismatches: 32, Indels: 44
0.75 0.10 0.14
Matches are distributed among these distances:
111 5 0.02
112 13 0.06
113 63 0.28
114 36 0.16
115 55 0.24
116 47 0.21
117 10 0.04
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.38
Consensus pattern (109 bp):
ATATAAAAAAAATATAATATATAAAAATATAAAATAAAAATAATATAATAATATAATATAATAAT
ATAATAAATTAATAAATTATATAAATAAATTATAAAAATTATTT
Found at i:8172 original size:89 final size:87
Alignment explanation
Indices: 7717--8172 Score: 216
Period size: 89 Copynumber: 5.2 Consensus size: 87
7707 ATAATAAAAT
* *
7717 ATTTAATAAATATTATTAATA-AAT-TAATTAAAAATATATATATAATTAATAATA-AATAA-AT
1 ATTTAATAAATA--ATTAATATAATAT-A-TAAAAATATA-AAATAAAT-ATAATATAATAATAT
* *
7778 A-TTATATATATAATAAATAAATAATATA
60 ATTTATATATATAATAAATTAATTAT-TA
* * * * * * *
7806 A-TTAAAAAAAAATTTA-ATAATAAAT-AAAAT-TAAATTAATTATATTATATAA-ATATAAATT
1 ATTTAATAAATAATTAATATAATATATAAAAATATAAAATAA--ATATAATATAATA-ATATATT
*
7866 TA-ATA-ATAATAAA-TAA-TAATA
63 TATATATATAATAAATTAATTATTA
* * *
7887 ATTTAAATAAAAAAAATTAATA-AAAATA-AAAAATATAAAATTAAA-A-AAT-TAA-ATTATAT
1 ATTT-AAT--AAATAATTAATATAATATATAAAAATATAAAA-TAAATATAATATAATAATATAT
* * *
7946 GTATA-AAAT-ATAAATTAAATATAATA
62 TTATATATATAATAAATT-AAT-TATTA
7972 TATTTAAATATAATAA-TAATA-AATTATATATTAAAATAATAAAAT-AATAATAATA-AATTAA
1 -ATTT-AATA-AATAATTAATATAA-TATATA--AAAAT-ATAAAATAAAT-ATAATATAA-TAA
* * * **
8033 TA-AATTATATAAATAA-AATTATAAAAATT-
57 TATATTTATATATATAATAAAT-TAATTATTA
*
8062 ATTTATATAAA-ATATAAATATAATATATAAAAATATAAAATAAATATAATATAATAATATTATT
1 ATTTA-ATAAATA-ATTAATATAATATATAAAAATATAAAATAAATATAATATAATAATA-TATT
8126 TAATATATATAATAAATTAATTATTA
63 T-ATATATATAATAAATTAATTATTA
8152 ATTTAATAAATAATTAATATA
1 ATTTAATAAATAATTAATATA
8173 TTATTATATT
Statistics
Matches: 280, Mismatches: 37, Indels: 100
0.67 0.09 0.24
Matches are distributed among these distances:
81 15 0.05
82 15 0.05
83 16 0.06
84 26 0.09
85 38 0.14
86 43 0.15
87 16 0.06
88 21 0.08
89 53 0.19
90 16 0.06
91 7 0.03
92 12 0.04
93 2 0.01
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (87 bp):
ATTTAATAAATAATTAATATAATATATAAAAATATAAAATAAATATAATATAATAATATATTTAT
ATATATAATAAATTAATTATTA
Found at i:8188 original size:24 final size:25
Alignment explanation
Indices: 8105--8244 Score: 81
Period size: 27 Copynumber: 5.3 Consensus size: 25
8095 TATAAAATAA
8105 ATATAATATAATAATATTATTTAATA-T
1 ATATAAT-TAAT-ATATTA-TTAATATT
*
8132 ATATAATAAAT-TAATTATTAAT-TT
1 ATATAATTAATAT-ATTATTAATATT
8156 AATAAATAATTAATATATTATT-ATATT
1 -AT--ATAATTAATATATTATTAATATT
** *
8183 ATATAAAAAAAATAATATTATATAAAATT
1 ATAT--AATTAAT-ATATTAT-TAATATT
* * *
8212 ATATAATTAATATAATAAATAATATA
1 ATATAATTAATAT-ATTATTAATATT
8238 ATATAAT
1 ATATAAT
8245 AAAATAAAAT
Statistics
Matches: 89, Mismatches: 11, Indels: 27
0.70 0.09 0.21
Matches are distributed among these distances:
24 9 0.10
25 6 0.07
26 26 0.29
27 38 0.43
28 2 0.02
29 8 0.09
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
ATATAATTAATATATTATTAATATT
Found at i:8330 original size:24 final size:23
Alignment explanation
Indices: 8270--8472 Score: 109
Period size: 23 Copynumber: 9.1 Consensus size: 23
8260 AGTAATATTA
*
8270 ATAAATATATTATAAAA-AAATATT
1 ATAAATA-ATTA-AAAATAAAAATT
*
8294 -TAATATAA-AAAAATATAAAAATT
1 ATAA-ATAATTAAAA-ATAAAAATT
*
8317 ATAAATAATT-AAAATATAAAATA
1 ATAAATAATTAAAAATA-AAAATT
8340 ATATAATAATTAAAAATAAAAAATT
1 ATA-AATAATTAAAAAT-AAAAATT
*
8365 A-AAA-AAATATAAAA-AAAAATT
1 ATAAATAATTA-AAAATAAAAATT
*
8386 AT--A-AA-T-AAAATAAAAATA
1 ATAAATAATTAAAAATAAAAATT
* *
8404 ATAAAAAAATTAAAAA-ATAAATT
1 AT-AAATAATTAAAAATAAAAATT
8427 A-ATAAT-ATTAAAAATAAAAA-T
1 ATA-AATAATTAAAAATAAAAATT
*
8448 ATAAAT-A-TATAAATAAAATATT
1 ATAAATAATTAAAAATAAAA-ATT
8470 ATA
1 ATA
8473 TTAAAAAAAT
Statistics
Matches: 144, Mismatches: 12, Indels: 48
0.71 0.06 0.24
Matches are distributed among these distances:
17 4 0.03
18 8 0.06
19 1 0.01
20 13 0.09
21 28 0.19
22 22 0.15
23 38 0.26
24 18 0.12
25 11 0.08
26 1 0.01
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (23 bp):
ATAAATAATTAAAAATAAAAATT
Found at i:8431 original size:107 final size:108
Alignment explanation
Indices: 8207--8487 Score: 242
Period size: 107 Copynumber: 2.6 Consensus size: 108
8197 ATATTATATA
* * **
8207 AAATTATATAATTAATATA-ATAAATAATATAATATAATAAAATAAAATAATATAGTAATATTAA
1 AAATTA-ATAATTAAAATATA-AAATAATATAATATAATAAAATAAAATAATAAAAAAATATTAA
* * **
8271 TAAATATATTATAAAAAAATATTTAATATAAAAAAATATAAAAAT
64 TAAAAAAATTATAAAAAAATATAAAATATAAAAAAATATAAAAAT
* * *
8316 -TATAAATAATTAAAATATAAAATAATATAATA-ATTAAAAATAAAA-AATTAAAAAAATA-TAA
1 AAATTAATAATTAAAATATAAAATAATATAATATAAT-AAAATAAAATAA-TAAAAAAATATTAA
8377 -AAAAAAATTATAAATAAAATA-AAAATAATAAAAAAAT-TAAAAAAT
64 TAAAAAAATTATAAA-AAAATATAAAAT-ATAAAAAAATAT-AAAAAT
* ** *
8422 AAATTAATAATATTAAAA-ATAAAA-ATATAAATATATAAATAAAATATTATATTAAAAAAAT-T
1 AAATTAAT-A-ATTAAAATATAAAATA-ATATA-ATAT-AATAAAATAAAATAATAAAAAAATAT
8484 TAAT
61 TAAT
8488 TTTATAATAT
Statistics
Matches: 138, Mismatches: 18, Indels: 30
0.74 0.10 0.16
Matches are distributed among these distances:
105 16 0.12
106 29 0.21
107 46 0.33
108 15 0.11
109 10 0.07
110 19 0.14
111 3 0.02
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (108 bp):
AAATTAATAATTAAAATATAAAATAATATAATATAATAAAATAAAATAATAAAAAAATATTAATA
AAAAAATTATAAAAAAATATAAAATATAAAAAAATATAAAAAT
Found at i:8654 original size:32 final size:34
Alignment explanation
Indices: 8545--8675 Score: 76
Period size: 33 Copynumber: 3.9 Consensus size: 34
8535 AATTATTTAT
* * * *
8545 AATAATATATAATAAAAAATATAAATAA-ATAAA
1 AATAATATAAAATAAAATATAAAAATAATAAAAA
* * *
8578 ATTAA-ATAAATATAAAATATAATAATAA-AACAA
1 AATAATATAAA-ATAAAATATAAAAATAATAAAAA
* *
8611 AAT-ATATAATATAATAATGATTAAAAATATATAAAAT
1 AATAATATAAAATAA-AAT-A-TAAAAATA-ATAAAAA
* *
8648 AA-AATATAAAA-ATAATAAAAAAATAATA
1 AATAATATAAAATAAAATATAAAAATAATA
8676 TAATATAAAT
Statistics
Matches: 75, Mismatches: 15, Indels: 17
0.70 0.14 0.16
Matches are distributed among these distances:
32 12 0.16
33 37 0.49
34 2 0.03
35 10 0.13
36 2 0.03
37 12 0.16
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.28
Consensus pattern (34 bp):
AATAATATAAAATAAAATATAAAAATAATAAAAA
Found at i:11778 original size:19 final size:19
Alignment explanation
Indices: 11751--11795 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
11741 ATCTGAAATC
*
11751 AAAAACAAAGATTAAGATT
1 AAAAGCAAAGATTAAGATT
11770 AAAAGCAAAGATTAAGATT
1 AAAAGCAAAGATTAAGATT
11789 -AAAGCAA
1 AAAAGCAA
11796 TCTGAATTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 7 0.28
19 18 0.72
ACGTcount: A:0.62, C:0.07, G:0.13, T:0.18
Consensus pattern (19 bp):
AAAAGCAAAGATTAAGATT
Found at i:13141 original size:19 final size:19
Alignment explanation
Indices: 13117--13157 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
13107 CATCAGATCC
13117 GGTCATAACGTCTAGGCCA
1 GGTCATAACGTCTAGGCCA
13136 GGTCATAACGTCTAGGCCA
1 GGTCATAACGTCTAGGCCA
13155 GGT
1 GGT
13158 TTGGGGTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.22
Consensus pattern (19 bp):
GGTCATAACGTCTAGGCCA
Found at i:20153 original size:12 final size:12
Alignment explanation
Indices: 20138--20163 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
20128 ATCATCTTCT
20138 TCATCAGATTCA
1 TCATCAGATTCA
20150 TCATCAGATTCA
1 TCATCAGATTCA
20162 TC
1 TC
20164 CCTCGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (12 bp):
TCATCAGATTCA
Found at i:22265 original size:26 final size:23
Alignment explanation
Indices: 22239--22284 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
22229 CTTTTTTATT
*
22239 ATTATCAAATGAATTTTCTTAAC
1 ATTATCAAATAAATTTTCTTAAC
22262 ATTATCAAATAAATTTTCTTAAC
1 ATTATCAAATAAATTTTCTTAAC
22285 CAAATACTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.41, C:0.13, G:0.02, T:0.43
Consensus pattern (23 bp):
ATTATCAAATAAATTTTCTTAAC
Found at i:23034 original size:22 final size:22
Alignment explanation
Indices: 23006--23048 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
22996 AAATGTAGCA
* *
23006 GAGGACTGCCGACGACGATGCC
1 GAGGACTACCGAAGACGATGCC
*
23028 GAGGACTACCGAAGGCGATGC
1 GAGGACTACCGAAGACGATGC
23049 AGCAGACGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.28, G:0.37, T:0.09
Consensus pattern (22 bp):
GAGGACTACCGAAGACGATGCC
Found at i:23149 original size:14 final size:14
Alignment explanation
Indices: 23130--23174 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
23120 AACAACCCAA
23130 GATATATGCATATT
1 GATATATGCATATT
23144 GATATATG--TA-T
1 GATATATGCATATT
23155 -ATATATGCATATT
1 GATATATGCATATT
23168 GATATAT
1 GATATAT
23175 ATATACATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
10 7 0.26
11 1 0.04
12 4 0.15
13 1 0.04
14 14 0.52
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (14 bp):
GATATATGCATATT
Found at i:23161 original size:24 final size:24
Alignment explanation
Indices: 23131--23179 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
23121 ACAACCCAAG
*
23131 ATATATGCATATTGATATATGTAT
1 ATATATGCATATTGATATATATAT
23155 ATATATGCATATTGATATATATAT
1 ATATATGCATATTGATATATATAT
23179 A
1 A
23180 CATTACAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (24 bp):
ATATATGCATATTGATATATATAT
Found at i:26753 original size:18 final size:17
Alignment explanation
Indices: 26701--26751 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
26691 GACAAATGGG
26701 TTTGATTTGGGGGAAAT
1 TTTGATTTGGGGGAAAT
* * **
26718 TTAGGGTTTAAGGGAAAT
1 TT-TGATTTGGGGGAAAT
26736 TTTGATTTGGGGGAAA
1 TTTGATTTGGGGGAAA
26752 ATAAGGGGTT
Statistics
Matches: 25, Mismatches: 8, Indels: 2
0.71 0.23 0.06
Matches are distributed among these distances:
17 12 0.48
18 13 0.52
ACGTcount: A:0.27, C:0.00, G:0.35, T:0.37
Consensus pattern (17 bp):
TTTGATTTGGGGGAAAT
Found at i:28072 original size:38 final size:36
Alignment explanation
Indices: 27997--28076 Score: 108
Period size: 38 Copynumber: 2.2 Consensus size: 36
27987 CCCAGCCCAT
* *
27997 ACCATAAACTTAACATACTATACCATTGAACCTTAA
1 ACCATAAACTTAAAATACTATACCATTGAACCCTAA
28033 ACCATAAACTTAAAATA-TATTCTACCATTGAACCCTAA
1 ACCATAAACTTAAAATACTA---TACCATTGAACCCTAA
28071 ACCATA
1 ACCATA
28077 GGCCTTAAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
35 2 0.05
36 16 0.41
38 21 0.54
ACGTcount: A:0.45, C:0.25, G:0.03, T:0.28
Consensus pattern (36 bp):
ACCATAAACTTAAAATACTATACCATTGAACCCTAA
Found at i:28231 original size:7 final size:7
Alignment explanation
Indices: 28214--28312 Score: 54
Period size: 7 Copynumber: 13.7 Consensus size: 7
28204 TATATTATTT
28214 TTTAGGGG
1 TTTA-GGG
28222 TTTAGGG
1 TTTAGGG
*
28229 TTTTAGAG
1 -TTTAGGG
*
28237 TTTATGG
1 TTTAGGG
* *
28244 ATTAGTG
1 TTTAGGG
28251 TTTAGGG
1 TTTAGGG
***
28258 TTTATAT
1 TTTAGGG
***
28265 TTTAAAA
1 TTTAGGG
28272 TTTAGGG
1 TTTAGGG
28279 TTTAGGG
1 TTTAGGG
**
28286 TTTAATG
1 TTTAGGG
*
28293 TTTAGGA
1 TTTAGGG
28300 TTTAAGGG
1 TTT-AGGG
28308 TTTAG
1 TTTAG
28313 AGAAAGCCAT
Statistics
Matches: 67, Mismatches: 22, Indels: 5
0.71 0.23 0.05
Matches are distributed among these distances:
7 51 0.76
8 16 0.24
ACGTcount: A:0.23, C:0.00, G:0.29, T:0.47
Consensus pattern (7 bp):
TTTAGGG
Found at i:28679 original size:41 final size:41
Alignment explanation
Indices: 28634--28749 Score: 146
Period size: 40 Copynumber: 2.9 Consensus size: 41
28624 TACTGCTCAG
*
28634 TTTTTAGTGGCATTTTA-CATAAAAATGCCGCTATTCATCAA
1 TTTTTAGTGGCATTTTAGC-TAAAAACGCCGCTATTCATCAA
* * *
28675 TTTTT-GCGGCGTTTTAGCTAAAAACGCCGCTATTGATCAA
1 TTTTTAGTGGCATTTTAGCTAAAAACGCCGCTATTCATCAA
* * *
28715 TTTTTAGTGGCGTTTCAGCCAAAAACGCCGCTATT
1 TTTTTAGTGGCATTTTAGCTAAAAACGCCGCTATT
28750 GTTCAGTTTT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
40 34 0.52
41 32 0.48
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (41 bp):
TTTTTAGTGGCATTTTAGCTAAAAACGCCGCTATTCATCAA
Found at i:28750 original size:41 final size:40
Alignment explanation
Indices: 28654--28760 Score: 142
Period size: 41 Copynumber: 2.6 Consensus size: 40
28644 CATTTTACAT
* * * *
28654 AAAAATGCCGCTATTCATCAATTTTTGCGGCGTTTTAGCT
1 AAAAACGCCGCTATTGATCAATTTTTGCGGCGTTTCAGCC
*
28694 AAAAACGCCGCTATTGATCAATTTTTAGTGGCGTTTCAGCC
1 AAAAACGCCGCTATTGATCAATTTTT-GCGGCGTTTCAGCC
* *
28735 AAAAACGCCGCTATTGTTCAGTTTTT
1 AAAAACGCCGCTATTGATCAATTTTT
28761 TGCAAACGCC
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
40 24 0.41
41 35 0.59
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (40 bp):
AAAAACGCCGCTATTGATCAATTTTTGCGGCGTTTCAGCC
Found at i:29735 original size:20 final size:20
Alignment explanation
Indices: 29696--29768 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
29686 TGTTGTTTTA
*
29696 AATTGATTCTTTGCTTATTTG
1 AATTGATTCTTT-ATTATTTG
*
29717 AATTGATTGTTTATTATTTG
1 AATTGATTCTTTATTATTTG
* * * * *
29737 GATCGATTCATTATTGTTTA
1 AATTGATTCTTTATTATTTG
29757 AATTGATTCTTT
1 AATTGATTCTTT
29769 GTTGGTTAAC
Statistics
Matches: 41, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
20 30 0.73
21 11 0.27
ACGTcount: A:0.23, C:0.07, G:0.14, T:0.56
Consensus pattern (20 bp):
AATTGATTCTTTATTATTTG
Found at i:32167 original size:15 final size:15
Alignment explanation
Indices: 32143--32208 Score: 53
Period size: 15 Copynumber: 4.4 Consensus size: 15
32133 TATAACAAAA
*
32143 TTCAACACTTAATTT
1 TTCAATACTTAATTT
*
32158 TTCAATACTTATTTT
1 TTCAATACTTAATTT
* *
32173 TTCAAGA-TATACTTT
1 TTCAATACT-TAATTT
* * *
32188 TTCAGTAGTTAAATT
1 TTCAATACTTAATTT
32203 TTCAAT
1 TTCAAT
32209 TTGTCAAATA
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
14 1 0.03
15 38 0.95
16 1 0.03
ACGTcount: A:0.32, C:0.14, G:0.05, T:0.50
Consensus pattern (15 bp):
TTCAATACTTAATTT
Found at i:32744 original size:20 final size:22
Alignment explanation
Indices: 32702--32744 Score: 54
Period size: 20 Copynumber: 2.0 Consensus size: 22
32692 CCTCTCACAA
*
32702 TCTCTCTAAATTCTTTCTAAAT
1 TCTCTCTAAATTCTCTCTAAAT
*
32724 TCTCTC-AAATT-TCTCTCAAT
1 TCTCTCTAAATTCTCTCTAAAT
32744 T
1 T
32745 TTTTGTCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 8 0.42
21 5 0.26
22 6 0.32
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.49
Consensus pattern (22 bp):
TCTCTCTAAATTCTCTCTAAAT
Found at i:32753 original size:22 final size:23
Alignment explanation
Indices: 32728--32770 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
32718 CTAAATTCTC
32728 TCAAA-TT-TCTCTCAATTTTTTG
1 TCAAAGTTGTCTCT-AATTTTTTG
32750 TCAAAGTTGTCTCTAATTTTT
1 TCAAAGTTGTCTCTAATTTTT
32771 GCAAAAAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 9 0.47
24 5 0.26
ACGTcount: A:0.23, C:0.16, G:0.07, T:0.53
Consensus pattern (23 bp):
TCAAAGTTGTCTCTAATTTTTTG
Found at i:32820 original size:19 final size:19
Alignment explanation
Indices: 32784--32821 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
32774 AAAAAGCTGT
**
32784 GTTTTATTTTTTTGAATTA
1 GTTTTATTTTTTAAAATTA
32803 GTTTTATTTTTTAAAATTA
1 GTTTTATTTTTTAAAATTA
32822 CAAAAATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.66
Consensus pattern (19 bp):
GTTTTATTTTTTAAAATTA
Found at i:33922 original size:7 final size:7
Alignment explanation
Indices: 33911--33942 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
33901 AGTCGTTTCG
*
33911 TATTTAG
1 TATTTAT
33918 TATTTAT
1 TATTTAT
33925 TATTTAT
1 TATTTAT
33932 TATTTAT
1 TATTTAT
33939 TATT
1 TATT
33943 ACCTATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (7 bp):
TATTTAT
Found at i:34584 original size:18 final size:18
Alignment explanation
Indices: 34561--34602 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
34551 GCCAGGTGCA
*
34561 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
*
34579 TATCCTAACCCTTTTATG
1 TATCCTAACCCTTATATG
*
34597 TTTCCT
1 TATCCT
34603 TTACCCAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.29, G:0.07, T:0.45
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:37797 original size:126 final size:125
Alignment explanation
Indices: 37565--37998 Score: 724
Period size: 126 Copynumber: 3.5 Consensus size: 125
37555 AGTCTAAGGC
37565 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCCGTAATTTTGCTGAC
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCCGTAATTTTGCTGAC
* *
37630 AGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGATCAGAAACATCTTTTCAAAATTA
66 AGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
* * *
37690 TTTTATCAGATACTACAGTAGCAAAAGAGCATCCACGTGGAAGCTTTTTTCTGTAATTTTGCTGA
1 TTTT-TCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCCGTAATTTTGCTGA
* * *
37755 CAATGCATCTTTCTTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
65 CAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
* * * *
37816 TTTTATCAAATACTACTGTAGCAAAAGAGTGTCCACGTGGGAGCTTTTTTCCATAATTTTGCTGA
1 TTTT-TCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCCGTAATTTTGCTGA
*
37881 CAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAACTTA
65 CAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
*
37942 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATT
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCCGTAATT
37999 AATAGTTAAT
Statistics
Matches: 286, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
125 54 0.19
126 232 0.81
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (125 bp):
TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCCGTAATTTTGCTGAC
AGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
Found at i:38138 original size:18 final size:16
Alignment explanation
Indices: 38121--38152 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
38111 TTTTCCTTAA
38121 AAAACACTAAAACCTT
1 AAAACACTAAAACCTT
*
38137 AAACCACTAAAACCTT
1 AAAACACTAAAACCTT
38153 GATCCTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAACACTAAAACCTT
Found at i:38243 original size:158 final size:158
Alignment explanation
Indices: 38019--38961 Score: 775
Period size: 158 Copynumber: 6.1 Consensus size: 158
38009 TTAATTAATA
* *
38019 AACCCTAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAAT
1 AACCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAAT
* *
38084 TAACCCTCAACTCTAATTAAATTAATTTTTTCCTTAAAAAACACTAAAACCTTAAACCACTAAAA
66 TAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAA
* * *
38149 CCTTGATCCTAAAACAATAAAAAACCTT
131 CCCTAATCCTAAAACAATAAAAAACCCT
*
38177 AACCTT-AAAAACCCTAAATCCTAATTTAATTGATTTTTTTTATTTTCATAGTTAATTTAATTAA
1 AACCTTAAAAAACCCTAAATCCTAATTTAATTGA-TTTTTTTAATTTCATAGTTAATTTAATTAA
* * * *
38241 TTAACCCTCAACTCTAATTAAATAAATTCTTCCCTTAAAAAA-ACTAAAACCCTAAACTATTAAA
65 TTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAA
* *
38305 ACCTTGATCCTAAAACAATAAAAAAACCCT
130 ACCCTAATCCTAAAACAAT-AAAAAACCCT
* * *
38335 AACCTTAAAAAACTCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAAT
1 AACCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAAT
* *
38400 TAACCTTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCT-AATC-CTAAAA
66 TAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAA
* **
38463 --C-AAT-CAAAAACCCTAACCTTAAAA----
131 CCCTAATCCTAAAACAATAA----AAAACCCT
* ** * ** * * * * *
38487 AACCTT---AAACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCT
1 AACCTTAAAAAACCCTAA-AT-CCTAATTTAATTGATTT--T-TTTAATTTCA-TAGTTAA--TT
* * ** * * * ** ** **** *
38549 CAACTCGAATTAA-ATTAAATTTTCCCTTAAAGAACACTAAAACCC-T--AAACCACTAAAACCC
58 TAA-T-TAATTAACCCTCAACTCT-AATTAAATTA-A-TTTTTCCCTTAAAAAACACTAAAACCC
* * * **
38610 T-AATC-CT--AACAC-AAT-CAAAAACCCTAACCTTAAAA----
118 TAAACCACTAAAACCCTAATCCTAAAACAATAA----AAAACCCT
*
38645 AACCCT----AA------ATCCTAATTTAATTGA-TTTTTTAATTTCATAGTTAATTTAATTAAT
1 AACCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAAT
* *
38699 TAACCCTCAACTCTAATTAAATTAAATTTTCCCTTAAAGAACACTAAAACCCTAAACCACTAAAA
66 TAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAA
*
38764 CCCTAATCCTAAAACAATCAAAAACCCT
131 CCCTAATCCTAAAACAATAAAAAACCCT
38792 AACCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAAT
1 AACCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAAT
* ***
38857 TAACCCTCAACTCTAATTAAATTAATTTTTACCTT-AAAAACACTAAAACCCTAAA-TTTTAAAA
66 TAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACT-AAA
*
38920 ACCCTAA-CCTTAAAATAATAAAAAACCCT
130 ACCCTAATCC-TAAAACAATAAAAAACCCT
*
38949 AACCCTACAAAAA
1 AACCTTA-AAAAA
38962 GGACAAAACG
Statistics
Matches: 636, Mismatches: 98, Indels: 102
0.76 0.12 0.12
Matches are distributed among these distances:
138 3 0.00
139 2 0.00
140 12 0.02
141 20 0.03
142 6 0.01
143 6 0.01
144 6 0.01
145 12 0.02
146 4 0.01
147 13 0.02
148 2 0.00
149 16 0.03
150 1 0.00
151 13 0.02
152 8 0.01
153 8 0.01
154 9 0.01
155 6 0.01
156 9 0.01
157 142 0.22
158 284 0.45
159 48 0.08
160 2 0.00
161 4 0.01
ACGTcount: A:0.44, C:0.21, G:0.02, T:0.34
Consensus pattern (158 bp):
AACCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAAT
TAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAA
CCCTAATCCTAAAACAATAAAAAACCCT
Found at i:38448 original size:143 final size:142
Alignment explanation
Indices: 38301--38753 Score: 536
Period size: 142 Copynumber: 3.1 Consensus size: 142
38291 CCTAAACTAT
* *
38301 TAAAACCTTGATCCTAAAACAATAAAAAAACCCTAACCTTAAAAAA-CTCTAAACCCTAATTTAA
1 TAAAACCCTAATCCTAAAACAAT-AAAAAACCCTAACCTTAAAAAACCT-TAAACCCTAATTTAA
* * * *
38365 TTGATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCTTCAACTCTAATTAAATTAATTTTT
64 TTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCGAATTAAATTAAATTTT
38430 CCCTTAAAAAACAC
129 CCCTTAAAAAACAC
*
38444 TAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCTTAAACCCTAATTTAATT
1 TAAAACCCTAATCCTAAAACAATAAAAAACCCTAACCTTAAAAAACCTTAAACCCTAATTTAATT
38509 GATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCGAATTAAATTAAATTTTCC
66 GATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCGAATTAAATTAAATTTTCC
*
38574 CTTAAAGAACAC
131 CTTAAAAAACAC
* ** ** * * *
38586 TAAAACCCTAAACCACTAAAACCCTAATCCTAACAC-AATC-AAAAACCCTAACCTTAAAAAACC
1 TAAAACCCT-AATC-CTAAAACAATAA--AAAACCCTAACCTTAAAA----AACCTT---AAACC
*
38649 CTAAATCCTAATTTAATTGA-TTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCT
55 CTA-------ATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCG
*
38713 AATTAAATTAAATTTTCCCTTAAAGAACAC
113 AATTAAATTAAATTTTCCCTTAAAAAACAC
38743 TAAAACCCTAA
1 TAAAACCCTAA
38754 ACCACTAAAA
Statistics
Matches: 273, Mismatches: 18, Indels: 25
0.86 0.06 0.08
Matches are distributed among these distances:
142 119 0.44
143 26 0.10
144 13 0.05
145 3 0.01
146 4 0.01
148 6 0.02
151 8 0.03
156 2 0.01
157 82 0.30
158 10 0.04
ACGTcount: A:0.43, C:0.21, G:0.02, T:0.34
Consensus pattern (142 bp):
TAAAACCCTAATCCTAAAACAATAAAAAACCCTAACCTTAAAAAACCTTAAACCCTAATTTAATT
GATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCGAATTAAATTAAATTTTCC
CTTAAAAAACAC
Found at i:38500 original size:23 final size:24
Alignment explanation
Indices: 38431--38502 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
38421 TTAATTTTTC
38431 CCTTAAAAAACACTAAAACCCTAAT
1 CCTTAAAAAAC-CTAAAACCCTAAT
* *
38456 CC-TAAAACAATCAAAAACCCTAA-
1 CCTTAAAA-AACCTAAAACCCTAAT
*
38479 CCTTAAAAAACCTTAAACCCTAAT
1 CCTTAAAAAACCTAAAACCCTAAT
38503 TTAATTGATT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
23 14 0.36
24 21 0.54
25 4 0.10
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.19
Consensus pattern (24 bp):
CCTTAAAAAACCTAAAACCCTAAT
Found at i:39321 original size:23 final size:23
Alignment explanation
Indices: 39253--39323 Score: 74
Period size: 23 Copynumber: 3.0 Consensus size: 23
39243 TTAATTTTTC
39253 CCTTAAAAAACACTAAACCCTAAT
1 CCTTAAAAAAC-CTAAACCCTAAT
**
39277 CC-TAAAACAATCAAAAACCCTAA-
1 CCTTAAAA-AA-CCTAAACCCTAAT
39300 CCTTAAAAAACCTTAAACCCTAAT
1 CCTTAAAAAACC-TAAACCCTAAT
39324 TTAATTGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
22 1 0.03
23 18 0.47
24 18 0.47
25 1 0.03
ACGTcount: A:0.51, C:0.30, G:0.00, T:0.20
Consensus pattern (23 bp):
CCTTAAAAAACCTAAACCCTAAT
Found at i:39399 original size:664 final size:665
Alignment explanation
Indices: 38599--39893 Score: 2434
Period size: 664 Copynumber: 1.9 Consensus size: 665
38589 AACCCTAAAC
* *
38599 CACTAAAACCCTAATCCTAACACAATCAAAAACCCTAACCTTAAAAAACCCTAAATCCTAATTTA
1 CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAACCCTAATTTA
38664 ATTGATTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTTT
66 ATTGATTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTTT
38729 CCCTTAAAGAACACTAAAACCCTAAACCACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAA
131 CCCTTAAAGAACACTAAAACCCTAAACCACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAA
38794 CCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTA
196 CCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTA
38859 ACCCTCAACTCTAATTAAATTAATTTTTACCTT-AAAAACACTAAAACCCTAAATTTTAAAAACC
261 ACCCTCAACTCTAATTAAATTAATTTTTACCTTAAAAAACACTAAAACCCTAAATTTTAAAAACC
*
38923 CTAACCTTAAAATAATAAAAAACCCTAACCCT-ACAAAAAGGACAAAACGCTCCCCCAGGGAAGC
326 CTAACCTTAAAATAATAAAAAACCCTAACCCTAAAAAAAAGGACAAAACGCTCCCCCAGGGAAGC
* *
38987 GTTTTGCTGACACGTACCCTGACTTCGCACTGACGTGGACATGCTTTCGAGAAAAATGGTCCTTT
391 GTTTTGCTGACACGTACCCTGACTTCGCACTGACGTGGACACGCTTTCGAGAAAAATGATCCTTT
*
39052 CCTGTAAATAATAAAAAAATCAGACCATTTCAGTAAATAACGAAATAAAATGGCTTTTTTAATAA
456 CCTGTAAATAATAAAAAAATCAGACCATTTCAGTAAATAACGAAATAAAATGACTTTTTTAATAA
39117 ATTGGCCAAAGATGTGCGCAAAAAAAAAATAGAGAAAAACAAAGTAGCGCACATTAGCTCCCACC
521 ATTGGCCAAAGATGTGCGC-AAAAAAAAATAGAGAAAAACAAAGTAGCGCACATTAGCTCCCACC
*
39182 GGTGGCAAACACCAATATTTAATTAACTAATATAATATTTAAAACTTCAACTCTAATTAAATTAA
585 AGTGGCAAACACCAATATTTAATTAACTAATATAATATTTAAAACTTCAACTCTAATTAAATTAA
39247 TTTTTCCCTTAAAAAA
650 TTTTTCCCTTAAAAAA
*
39263 CACT-AAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCTTAAACCCTAATTTA
1 CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAACCCTAATTTA
*
39327 ATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAATCCTCAACTCTAATTAAATTAAATTT
66 ATTGA-TTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTT
*
39392 TCCCTTAAAGAACACTAAAACCCTAAACCACTAAAACCCTAATCCTAAAATAATCAAAAACCCTA
130 TCCCTTAAAGAACACTAAAACCCTAAACCACTAAAACCCTAATCCTAAAACAATCAAAAACCCTA
39457 ACCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATT
195 ACCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATT
*
39522 AACCCTCAACTCTAATTAAATTAATTTTTACCTTAAAAAACACTAAAACCTTAAATTTTAAAAAC
260 AACCCTCAACTCTAATTAAATTAATTTTTACCTTAAAAAACACTAAAACCCTAAATTTTAAAAAC
39587 CCTAACCTTAAAATAATAAAAAACCCTAACCCTAAAAAAAAGGACAAAACGCTCCCCCAGGGAAG
325 CCTAACCTTAAAATAATAAAAAACCCTAACCCTAAAAAAAAGGACAAAACGCTCCCCCAGGGAAG
39652 CGTTTTGCTGACACGTACCCTGACTTCGCACTGACGTGGACACGCTTTCGAGAAAAATGATCCTT
390 CGTTTTGCTGACACGTACCCTGACTTCGCACTGACGTGGACACGCTTTCGAGAAAAATGATCCTT
*
39717 TCCTGTAAATAATAAAAAAGTCAGACCATTTCAGTAAATAACGAAATAAAATGACTTTTTTAATA
455 TCCTGTAAATAATAAAAAAATCAGACCATTTCAGTAAATAACGAAATAAAATGACTTTTTTAATA
*
39782 AATTGGCCAAAGATGTGCGCAAAAAAAAATAGAGAAAAACAAAGTAGCGCACATTAGCTCCTACC
520 AATTGGCCAAAGATGTGCGCAAAAAAAAATAGAGAAAAACAAAGTAGCGCACATTAGCTCCCACC
39847 AGTGGCAAACACCAATATTTAATTAACTAATATAATATTTAAAACTT
585 AGTGGCAAACACCAATATTTAATTAACTAATATAATATTTAAAACTT
39894 GAATTTGACA
Statistics
Matches: 615, Mismatches: 13, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
663 62 0.10
664 225 0.37
665 152 0.25
666 176 0.29
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (665 bp):
CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAACCCTAATTTA
ATTGATTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTTT
CCCTTAAAGAACACTAAAACCCTAAACCACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAA
CCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTA
ACCCTCAACTCTAATTAAATTAATTTTTACCTTAAAAAACACTAAAACCCTAAATTTTAAAAACC
CTAACCTTAAAATAATAAAAAACCCTAACCCTAAAAAAAAGGACAAAACGCTCCCCCAGGGAAGC
GTTTTGCTGACACGTACCCTGACTTCGCACTGACGTGGACACGCTTTCGAGAAAAATGATCCTTT
CCTGTAAATAATAAAAAAATCAGACCATTTCAGTAAATAACGAAATAAAATGACTTTTTTAATAA
ATTGGCCAAAGATGTGCGCAAAAAAAAATAGAGAAAAACAAAGTAGCGCACATTAGCTCCCACCA
GTGGCAAACACCAATATTTAATTAACTAATATAATATTTAAAACTTCAACTCTAATTAAATTAAT
TTTTCCCTTAAAAAA
Found at i:39434 original size:158 final size:157
Alignment explanation
Indices: 39260--39625 Score: 574
Period size: 158 Copynumber: 2.3 Consensus size: 157
39250 TTCCCTTAAA
* *
39260 AAACACT-AAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCTTAAACCCTAAT
1 AAACACTAAAACCCTAATCCTAAAATAATCAAAAACCCTAACCTTAAAAAACCCTAAACCCTAAT
*
39324 TTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAATCCTCAACTCTAATTAAATTAAA
66 TTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAA
* *
39389 TTTTCCCTTAAAGAACACTAAAACCCT
131 TTTTACCTTAAAAAACACTAAAACCCT
*
39416 AAACCACTAAAACCCTAATCCTAAAATAATCAAAAACCCTAACCTTAAAAAACCCTAAATCCTAA
1 AAA-CACTAAAACCCTAATCCTAAAATAATCAAAAACCCTAACCTTAAAAAACCCTAAACCCTAA
39481 TTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAA
65 TTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAA
* *
39546 TTTTTACCTTAAAAAACACTAAAACCTT
130 ATTTTACCTTAAAAAACACTAAAACCCT
*** * *
39574 AAATTTTAAAAACCCTAA-CCTTAAAATAATAAAAAACCCTAACCCTAAAAAA
1 AAACACT-AAAACCCTAATCC-TAAAATAATCAAAAACCCTAACCTTAAAAAA
39626 AAGGACAAAA
Statistics
Matches: 193, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
156 3 0.02
157 7 0.04
158 183 0.95
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (157 bp):
AAACACTAAAACCCTAATCCTAAAATAATCAAAAACCCTAACCTTAAAAAACCCTAAACCCTAAT
TTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAA
TTTTACCTTAAAAAACACTAAAACCCT
Found at i:46362 original size:46 final size:46
Alignment explanation
Indices: 46296--46387 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
46286 ATATTAATGT
46296 TGTTTAAATCAAACTTGCATGGTTTATAAAGATTCAATAATAATTA
1 TGTTTAAATCAAACTTGCATGGTTTATAAAGATTCAATAATAATTA
* *
46342 TGTTTAAATTAAACTTGCATGGTTTATGAAGATTCAATAATAATTA
1 TGTTTAAATCAAACTTGCATGGTTTATAAAGATTCAATAATAATTA
46388 CAAATCATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (46 bp):
TGTTTAAATCAAACTTGCATGGTTTATAAAGATTCAATAATAATTA
Found at i:51013 original size:39 final size:40
Alignment explanation
Indices: 50912--51135 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
50902 TTGAATGATG
* *
50912 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
50951 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
50992 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
51031 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
51070 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
51109 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
51136 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
39 75 0.46
40 76 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:51158 original size:79 final size:78
Alignment explanation
Indices: 50965--51135 Score: 238
Period size: 78 Copynumber: 2.2 Consensus size: 78
50955 GGACTAAGAT
* *
50965 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAGATACTAA-TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
51029 ATTCCGGGCTAAGC
65 ATACCGGGCTAAGC
* *
51043 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGTGCGAGATACT-AATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
51107 ATAACCGGGCTATGTC
65 AT-ACCGGGCTAAG-C
51123 CCGAAGGCATTTG
1 CCGAAGGCATTTG
51136 AACGAGTAGC
Statistics
Matches: 83, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
78 35 0.42
79 34 0.41
80 14 0.17
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAA
TACCGGGCTAAGC
Found at i:51166 original size:79 final size:79
Alignment explanation
Indices: 50965--51168 Score: 218
Period size: 79 Copynumber: 2.6 Consensus size: 79
50955 GGACTAAGAT
** * * * * *
50965 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAGATACTA
*
51029 ATTCCGGGCTAAGC
66 ATACCGGGCTAAGC
** * *
51043 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAGATACTA
*
51107 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* *
51123 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
51169 TACGTGATTT
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 34 0.31
79 49 0.45
80 25 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:55684 original size:40 final size:39
Alignment explanation
Indices: 55482--55704 Score: 258
Period size: 40 Copynumber: 5.7 Consensus size: 39
55472 TTGAATGATG
* * *
55482 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
* *
55522 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
55561 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
55600 TTCCGGGCT-AG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
* *
55639 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
55679 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
55705 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
38 33 0.20
39 41 0.25
40 80 0.49
41 8 0.05
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:63554 original size:40 final size:39
Alignment explanation
Indices: 63433--63601 Score: 218
Period size: 39 Copynumber: 4.3 Consensus size: 39
63423 CGGATAAGAT
*
63433 CCGAAGGC-TTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGC
*
63471 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGC
* * *
63510 CCGAAGGCATTTGTGCGAGTTTACTAAATCCGGGTTAAGT
1 CCGAAGGCATTTGTGCGAG-ATACTAAATCCGGGCTAAGC
* * *
63550 CCGAAGGCAATTGTGCGAGTTACTATAA-CCGGGCTATG-
1 CCGAAGGCATTTGTGCGAGATACTA-AATCCGGGCTAAGC
63588 CCGAAGGCCATTTG
1 CCGAAGG-CATTTG
63602 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
38 15 0.13
39 68 0.57
40 36 0.30
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGC
Found at i:63555 original size:79 final size:77
Alignment explanation
Indices: 63433--63601 Score: 216
Period size: 79 Copynumber: 2.2 Consensus size: 77
63423 CGGATAAGAT
* *
63433 CCGAAGGC-TTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA-
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGATACTAT
*
63496 ATTCCGGGCTAAG
66 A-ACCGGGCTAAG
* * * *
63509 CCCGAAGGCATTTGTGCGAGTTTACTAAATCCGGGTTAAGTCCGAAGGCAATTGTGCGAGTTACT
1 -CCGAAGGCATTTGTGCGAG-ATACTAAATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGATACT
*
63574 ATAACCGGGCTATG
64 ATAACCGGGCTAAG
63588 CCGAAGGCCATTTG
1 CCGAAGG-CATTTG
63602 AACGAGTAGC
Statistics
Matches: 80, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
77 8 0.10
78 17 0.21
79 54 0.68
80 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGATACTAT
AACCGGGCTAAG
Done.